Query         gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 529
No_of_seqs    228 out of 1609
Neff          8.5 
Searched_HMMs 33803
Date          Wed Jun  1 14:01:29 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780791.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3f2b_A DNA-directed DNA polym  97.7 0.00034 9.9E-09   57.1   9.1   80   32-111    17-101 (110)
  2 >1gm5_A RECG; helicase, replic  96.9  0.0012 3.5E-08   52.2   4.2   78   34-111     8-87  (89)
  3 >2hpi_A DNA polymerase III alp  96.7  0.0065 1.9E-07   45.6   7.1   76   33-111    20-98  (105)
  4 >3kf6_A Protein STN1; OB fold,  96.5   0.048 1.4E-06   37.8  10.3  104    6-113    11-128 (159)
  5 >2pi2_A Replication protein A   96.4   0.094 2.8E-06   35.2  11.0  116   11-130    45-170 (270)
  6 >1e1o_A Lysyl-tRNA synthetase;  96.3   0.062 1.8E-06   36.8   9.7   96   14-112     5-109 (121)
  7 >3kdf_D Replication protein A   96.3    0.15 4.5E-06   33.3  12.3  113   12-128     6-128 (132)
  8 >2kbn_A Conserved protein; nuc  96.1   0.089 2.6E-06   35.4   9.7   75   31-111    14-94  (109)
  9 >3e9h_A Lysyl-tRNA synthetase;  95.8   0.084 2.5E-06   35.6   8.5   95   15-112    35-137 (145)
 10 >1n9w_A Aspartyl-tRNA syntheta  95.6    0.23 6.8E-06   31.7  10.3   71   33-112    14-86  (104)
 11 >3bju_A Lysyl-tRNA synthetase;  95.5    0.17   5E-06   32.9   9.2   98   13-112     4-110 (127)
 12 >2fp4_B Succinyl-COA ligase [G  95.2    0.24 7.1E-06   31.6   9.2  135  131-274     4-145 (152)
 13 >3i7f_A Aspartyl-tRNA syntheta  95.2    0.25 7.4E-06   31.4   9.2   77   33-112    63-151 (161)
 14 >1oj7_A Hypothetical oxidoredu  95.1    0.15 4.3E-06   33.5   7.9   73  140-224    20-95  (175)
 15 >2nu8_B SCS-beta, succinyl-COA  95.1    0.36 1.1E-05   30.1   9.9  133  130-274     2-144 (151)
 16 >1b8a_A Protein (aspartyl-tRNA  95.1    0.28 8.3E-06   31.0   9.3   77   33-112    17-99  (108)
 17 >1v1q_A Primosomal replication  95.0    0.38 1.1E-05   29.8  10.6   79   33-112    20-118 (134)
 18 >1txy_A Primosomal replication  95.0    0.16 4.8E-06   33.1   7.9   79   34-113     4-102 (104)
 19 >3eiv_A Single-stranded DNA-bi  94.9    0.18 5.3E-06   32.7   7.8   79   32-111     4-109 (199)
 20 >2fxq_A Single-strand binding   94.8    0.32 9.4E-06   30.5   9.0   80   31-111     4-107 (264)
 21 >1ujn_A Dehydroquinate synthas  94.7    0.15 4.4E-06   33.4   7.1   96  133-245    16-115 (160)
 22 >1wyd_A Hypothetical aspartyl-  94.5    0.34   1E-05   30.2   8.6   78   33-112    17-96  (104)
 23 >1c0a_A Aspartyl tRNA syntheta  94.5    0.33 9.9E-06   30.3   8.4   78   33-112    16-103 (111)
 24 >1eov_A ASPRS, aspartyl-tRNA s  94.5    0.19 5.7E-06   32.4   7.2   77   33-112    37-128 (136)
 25 >1o2d_A Alcohol dehydrogenase,  94.3    0.29 8.4E-06   30.9   7.8   76  144-237    40-118 (188)
 26 >1x54_A Asparaginyl-tRNA synth  94.1    0.27 7.9E-06   31.2   7.3   82   29-112    12-99  (108)
 27 >3dm3_A Replication factor A;   94.1    0.47 1.4E-05   29.0   8.4   73   34-111    16-97  (105)
 28 >2vw9_A Single-stranded DNA bi  94.0    0.32 9.4E-06   30.5   7.4   79   33-112     3-106 (134)
 29 >3e0e_A Replication protein A;  93.9    0.64 1.9E-05   27.8   9.0   72   34-110    13-92  (97)
 30 >1xjv_A Protection of telomere  93.9    0.65 1.9E-05   27.7  11.3   54   51-106    38-93  (145)
 31 >3fhw_A Primosomal replication  93.8    0.45 1.3E-05   29.1   7.9   76   34-111     3-96  (115)
 32 >2h2w_A Homoserine O-succinylt  93.8     0.5 1.5E-05   28.8   8.1  117  124-244    24-151 (312)
 33 >1x3e_A Single-strand binding   93.7    0.35   1E-05   30.2   7.2   79   32-111     4-109 (165)
 34 >3ce9_A Glycerol dehydrogenase  93.7    0.29 8.7E-06   30.8   6.9   87  145-251    34-128 (162)
 35 >1z9f_A Single-strand binding   93.7    0.37 1.1E-05   29.9   7.3   81   31-112    15-120 (153)
 36 >3bfj_A 1,3-propanediol oxidor  93.6    0.57 1.7E-05   28.2   8.1   71  144-224    32-107 (185)
 37 >1vlj_A NADH-dependent butanol  92.4    0.35   1E-05   30.1   5.7   77  144-238    42-122 (193)
 38 >3lft_A Uncharacterized protei  92.4       1   3E-05   26.0   8.2   85  144-247    15-103 (118)
 39 >1se8_A Single-strand binding   92.1     1.1 3.2E-05   25.7   8.5   82   31-113     4-111 (301)
 40 >1jq5_A Glycerol dehydrogenase  92.0    0.71 2.1E-05   27.4   6.8   93  140-251    26-126 (163)
 41 >3jzd_A Iron-containing alcoho  91.7     0.9 2.7E-05   26.4   7.1   82  144-245    35-118 (161)
 42 >1xah_A Sadhqs, 3-dehydroquina  91.1    0.91 2.7E-05   26.4   6.6   91  144-245    30-121 (165)
 43 >1o1y_A Conserved hypothetical  90.8    0.71 2.1E-05   27.4   5.8   88  139-244     6-97  (239)
 44 >3koj_A Uncharacterized protei  90.7    0.49 1.5E-05   28.8   4.9   77   32-109    11-107 (108)
 45 >3hl0_A Maleylacetate reductas  90.7     1.4 4.1E-05   24.8   7.2   83  143-245    32-116 (159)
 46 >2ej5_A Enoyl-COA hydratase su  90.5    0.61 1.8E-05   28.0   5.2   81  182-269    27-125 (199)
 47 >3isa_A Putative enoyl-COA hyd  89.6    0.88 2.6E-05   26.5   5.5   76  186-269    35-129 (254)
 48 >3clh_A 3-dehydroquinate synth  89.6   0.043 1.3E-06   38.2  -1.2  104  142-252    23-128 (160)
 49 >1qvc_A Single stranded DNA bi  89.4     1.8 5.2E-05   23.9   7.3   80   31-111     4-109 (145)
 50 >3kjx_A Transcriptional regula  89.4     1.2 3.6E-05   25.2   6.1  111  145-275     8-122 (140)
 51 >2fbm_A Y chromosome chromodom  89.3       1   3E-05   26.1   5.6   78  184-269    50-150 (291)
 52 >1jb7_A Telomere-binding prote  89.1     1.8 5.5E-05   23.7  10.0   72   34-107    51-140 (180)
 53 >2h3h_A Sugar ABC transporter,  89.0     1.9 5.5E-05   23.6   9.0   87  146-249     2-91  (147)
 54 >1ynx_A Replication factor-A p  89.0     1.1 3.4E-05   25.6   5.7   74   33-106    15-101 (114)
 55 >3k8a_A Putative primosomal re  89.0     1.9 5.6E-05   23.6   8.9   75   33-111     8-101 (103)
 56 >1of8_A Phospho-2-dehydro-3-de  88.9     1.9 5.6E-05   23.6  10.0   43  208-250   241-283 (370)
 57 >1sg6_A Pentafunctional AROM p  88.7       2 5.8E-05   23.5   9.0   94  143-245    34-136 (181)
 58 >1eqq_A Single stranded DNA bi  88.1    0.74 2.2E-05   27.2   4.2   79   31-110     5-109 (178)
 59 >1u0t_A Inorganic polyphosphat  87.9       2 5.8E-05   23.4   6.3  107  144-259     3-122 (149)
 60 >1l0w_A Aspartyl-tRNA syntheta  87.9     2.2 6.4E-05   23.1   8.7   78   33-112    17-101 (113)
 61 >3h02_A Naphthoate synthase; I  87.7     2.1 6.2E-05   23.2   6.3   79  185-269    54-153 (265)
 62 >1jmc_A Protein (replication p  87.3     1.4 4.1E-05   24.8   5.3   73   33-105    19-104 (127)
 63 >3ju1_A Enoyl-COA hydratase/is  87.3     1.4 4.2E-05   24.7   5.3   80  182-269    66-173 (407)
 64 >3h0u_A Putative enoyl-COA hyd  87.3     1.3 3.8E-05   25.0   5.1   78  185-268    34-133 (289)
 65 >3iv7_A Alcohol dehydrogenase   87.2     2.3 6.9E-05   22.8   6.8   72  145-238    37-109 (160)
 66 >2gru_A 2-deoxy-scyllo-inosose  87.1     2.4   7E-05   22.7  11.2   94  141-245    29-125 (173)
 67 >2ppy_A Enoyl-COA hydratase; b  87.1     2.3 6.9E-05   22.8   6.3   78  186-269    36-132 (207)
 68 >3hp0_A Putative polyketide bi  87.1     1.8 5.4E-05   23.7   5.7   79  183-269    32-131 (267)
 69 >1jye_A Lactose operon repress  87.0     2.4 7.1E-05   22.7   7.4  124  118-259    33-164 (219)
 70 >1ta9_A Glycerol dehydrogenase  86.9    0.76 2.3E-05   27.1   3.7   89  143-251    89-185 (219)
 71 >3ebe_A Protein MCM10 homolog;  86.8    0.57 1.7E-05   28.3   3.0   75   34-110    58-138 (149)
 72 >2pbp_A Enoyl-COA hydratase su  86.5     2.5 7.4E-05   22.5   6.2   80  183-269    30-126 (200)
 73 >2zxr_A Single-stranded DNA sp  86.4     2.6 7.6E-05   22.4   9.3   87   15-112    60-157 (160)
 74 >2k50_A Replication factor A r  86.3     2.6 7.6E-05   22.4   7.7   52   53-107    45-98  (115)
 75 >1sg4_A 3,2-trans-enoyl-COA is  86.2     2.3 6.8E-05   22.8   5.9   80  183-269    29-128 (260)
 76 >2vdj_A Homoserine O-succinylt  86.1     1.4 4.2E-05   24.7   4.8  118  124-244    12-139 (301)
 77 >3l83_A Glutamine amido transf  85.9     2.6 7.7E-05   22.3   6.0   81  146-244     4-86  (250)
 78 >1rrm_A Lactaldehyde reductase  85.8     2.7 8.1E-05   22.2   6.1   71  145-225    31-104 (183)
 79 >1uiy_A Enoyl-COA hydratase; l  85.7     2.7 8.1E-05   22.1   6.4   79  185-269    26-125 (198)
 80 >2w3p_A Benzoyl-COA-dihydrodio  85.6     2.8 8.2E-05   22.1   6.5   75  184-263    57-154 (293)
 81 >1q7r_A Predicted amidotransfe  84.7       3 8.9E-05   21.8   6.2   96  124-245     2-99  (219)
 82 >2f6q_A Peroxisomal 3,2-trans-  84.6       3 8.9E-05   21.8   5.9   81  182-269    50-152 (280)
 83 >2k75_A Uncharacterized protei  84.2     3.1 9.3E-05   21.6   8.9   66   32-106    13-85  (106)
 84 >1vco_A CTP synthetase; tetram  83.7     3.3 9.7E-05   21.5   8.8   87  155-244     3-108 (270)
 85 >3gjz_A Microcin immunity prot  83.5     3.3 9.8E-05   21.4   8.3   89  141-235     6-106 (142)
 86 >3e61_A Putative transcription  83.4     3.3 9.9E-05   21.4   8.6   80  146-246     9-92  (120)
 87 >2a7k_A CARB; crotonase, antib  83.2     3.4  0.0001   21.3   6.2   80  185-270    27-126 (250)
 88 >1zl0_A Hypothetical protein P  83.1     3.4  0.0001   21.3   8.0   83  146-234    18-106 (118)
 89 >1o7i_A SSB, SSO2364, single s  83.0     3.4  0.0001   21.3   9.4   68   33-106    13-88  (119)
 90 >1wdk_A Fatty oxidation comple  82.9     3.5  0.0001   21.2   6.2   80  183-269    33-134 (284)
 91 >1hzd_A AUH, AU-binding protei  82.6     3.4  0.0001   21.3   5.5   78  185-269    39-136 (213)
 92 >3he2_A Enoyl-COA hydratase EC  82.2     2.4 7.1E-05   22.7   4.6   81  182-269    45-138 (226)
 93 >2iex_A Dihydroxynapthoic acid  82.1     3.7 0.00011   21.0   6.5   81  183-269    37-137 (211)
 94 >3g64_A Putative enoyl-COA hyd  82.0     3.7 0.00011   21.0   5.5   83  182-270    41-145 (236)
 95 >1ef8_A Methylmalonyl COA deca  82.0     2.5 7.4E-05   22.5   4.6   77  187-269    33-127 (221)
 96 >3lgj_A Single-stranded DNA-bi  81.9     2.9 8.5E-05   22.0   4.9   80   31-111    22-128 (169)
 97 >3ull_A DNA binding protein; D  81.6     3.8 0.00011   20.8   7.7   82   31-113    13-126 (132)
 98 >1mj3_A Enoyl-COA hydratase, m  81.6     1.8 5.3E-05   23.8   3.7   81  182-269    31-128 (238)
 99 >3l3s_A Enoyl-COA hydratase/is  81.2     3.9 0.00012   20.7   5.7   82  182-269    30-135 (209)
100 >1qzg_A Protection of telomere  81.1       4 0.00012   20.7   9.7   70   34-105    44-125 (187)
101 >2eq5_A 228AA long hypothetica  80.5     1.8 5.4E-05   23.7   3.5   85  144-246    10-103 (127)
102 >2q5c_A NTRC family transcript  80.1     4.2 0.00013   20.5   6.7   77  144-250     3-81  (106)
103 >3fdu_A Putative enoyl-COA hyd  79.8     4.3 0.00013   20.4   6.1   77  186-269    33-130 (266)
104 >3en2_A Probable primosomal re  79.5     4.4 0.00013   20.3   8.3   69   32-102     2-90  (101)
105 >1kq3_A Glycerol dehydrogenase  79.5    0.74 2.2E-05   27.2   1.2   91  140-251    17-115 (150)
106 >1j6q_A Cytochrome C maturatio  79.3     4.3 0.00013   20.4   5.1   88   12-108    10-102 (136)
107 >1wz8_A Enoyl-COA hydratase; l  79.3     4.5 0.00013   20.3   5.7   79  185-269    37-135 (244)
108 >2vk2_A YTFQ, ABC transporter   78.7     4.6 0.00014   20.1   9.2   97  145-259     2-102 (134)
109 >1v4v_A UDP-N-acetylglucosamin  78.5     4.7 0.00014   20.1   8.8   82  177-271    63-159 (204)
110 >1lcy_A HTRA2 serine protease;  78.5     3.1 9.3E-05   21.6   4.1   44  460-503    23-67  (86)
111 >1h05_A 3-dehydroquinate dehyd  78.0     4.8 0.00014   20.0   9.2   81  146-245     3-99  (146)
112 >3h5o_A Transcriptional regula  77.9     4.8 0.00014   19.9   7.4  120  118-257    34-161 (207)
113 >3h81_A Enoyl-COA hydratase EC  77.9     4.7 0.00014   20.1   4.9   81  182-269    49-146 (278)
114 >3jy6_A Transcriptional regula  77.6     4.9 0.00015   19.9   9.3   93  145-259     7-103 (159)
115 >3da8_A Probable 5'-phosphorib  77.4       5 0.00015   19.8   6.9   36  140-175     7-42  (215)
116 >1dci_A Dienoyl-COA isomerase;  77.3       5 0.00015   19.8   6.2   81  182-269    28-138 (249)
117 >3brs_A Periplasmic binding pr  77.2     3.8 0.00011   20.8   4.3   94  144-253     6-103 (156)
118 >3kqf_A Enoyl-COA hydratase/is  76.6     5.2 0.00015   19.7   5.6   80  183-269    34-133 (207)
119 >1qpz_A PURA, protein (purine   76.2     5.3 0.00016   19.6   9.7   85  146-249     2-90  (151)
120 >1no5_A Hypothetical protein H  76.0       4 0.00012   20.7   4.1   79  158-259    13-94  (114)
121 >3lke_A Enoyl-COA hydratase; n  75.9     5.4 0.00016   19.5   6.2   78  185-269    31-132 (263)
122 >1dbq_A Purine repressor; tran  75.7     5.4 0.00016   19.5   9.4   88  145-251     7-98  (157)
123 >1pjh_A Enoyl-COA isomerase; E  75.4     5.5 0.00016   19.4   6.6   40  230-269   102-143 (280)
124 >1q52_A MENB; lyase, structura  75.4     5.5 0.00016   19.4   6.7   41  229-269   136-178 (290)
125 >2uuu_A Alkyldihydroxyacetonep  75.3       5 0.00015   19.8   4.5   52  154-220    42-95  (117)
126 >3bpt_A 3-hydroxyisobutyryl-CO  74.9     5.7 0.00017   19.3   6.1   77  182-269    30-133 (363)
127 >2vx2_A Enoyl-COA hydratase do  74.8     5.1 0.00015   19.7   4.4   41  229-269   115-157 (230)
128 >3g23_A Peptidase U61, LD-carb  74.6     5.8 0.00017   19.3   7.2  103  146-259     4-113 (167)
129 >2csu_A 457AA long hypothetica  74.5     5.8 0.00017   19.2   8.7  121  130-256     3-147 (183)
130 >2j5g_A ALR4455 protein; enzym  74.3     5.8 0.00017   19.2   6.0   83  181-269    47-148 (263)
131 >1ky9_A Protease DO, DEGP, HTR  73.8     4.2 0.00012   20.5   3.7   44  461-504    64-109 (128)
132 >1te0_A Protease DEGS; two dom  73.0     3.9 0.00011   20.8   3.4   43  461-503    24-67  (103)
133 >3i47_A Enoyl COA hydratase/is  71.7     6.6  0.0002   18.7   6.3   81  183-269    29-130 (221)
134 >2an1_A Putative kinase; struc  71.7     4.4 0.00013   20.3   3.4   92  143-253     3-101 (138)
135 >2iks_A DNA-binding transcript  71.6     6.6  0.0002   18.7   7.5   95  145-259    20-118 (163)
136 >3l49_A ABC sugar (ribose) tra  69.9     7.1 0.00021   18.4   9.2   88  144-249     4-95  (150)
137 >3dzc_A UDP-N-acetylglucosamin  69.6     7.2 0.00021   18.4   8.8   82  177-271    83-179 (211)
138 >1wjj_A Hypothetical protein F  69.2     7.3 0.00022   18.3   9.1   49   52-106    63-112 (145)
139 >2c4w_A 3-dehydroquinate dehyd  69.0     7.4 0.00022   18.3   8.7   82  146-245    10-109 (176)
140 >3cqy_A Anhydro-N-acetylmurami  68.8     7.5 0.00022   18.3   6.3   86  121-245    78-175 (180)
141 >3bf0_A Protease 4; bacterial,  68.6     7.3 0.00022   18.3   4.0   82  182-269    25-108 (223)
142 >1nzy_A Dehalogenase, 4-chloro  68.6     7.5 0.00022   18.2   6.2   79  185-269    30-131 (243)
143 >3hin_A Putative 3-hydroxybuty  68.1     5.2 0.00015   19.7   3.2   42  228-269    94-137 (210)
144 >3l6u_A ABC-type sugar transpo  68.0     7.7 0.00023   18.1   9.2   85  144-246     7-95  (155)
145 >2ioy_A Periplasmic sugar-bind  67.8     7.8 0.00023   18.1   8.0   98  146-261     2-103 (150)
146 >1zr6_A Glucooligosaccharide o  67.8     2.7 8.1E-05   22.1   1.7   58  148-220    17-76  (95)
147 >2hmc_A AGR_L_411P, dihydrodip  67.7     7.8 0.00023   18.1   4.6   71  182-262    41-114 (235)
148 >2rgy_A Transcriptional regula  67.6     7.9 0.00023   18.1   8.8   91  145-253     8-102 (132)
149 >2q35_A CURF; crotonase, lyase  67.5     7.1 0.00021   18.5   3.8   76  187-269    32-121 (243)
150 >3d8u_A PURR transcriptional r  67.1       8 0.00024   18.0   7.1  103  146-269     4-110 (154)
151 >1jfl_A Aspartate racemase; al  66.9     8.1 0.00024   18.0   6.8   86  146-247     2-104 (118)
152 >2f48_A Diphosphate--fructose-  66.8     8.1 0.00024   18.0   7.6  109  142-268    69-215 (283)
153 >2bon_A Lipid kinase; DAG kina  66.2     8.3 0.00025   17.8   7.1  104  142-271    26-138 (165)
154 >3bpp_A 1510-N membrane protea  66.1     5.4 0.00016   19.5   3.0   80  183-270    20-102 (210)
155 >3gkb_A Putative enoyl-COA hyd  66.1     8.3 0.00025   17.8   5.8   78  185-269    35-137 (227)
156 >1szo_A 6-oxocamphor hydrolase  66.1     8.3 0.00025   17.8   6.2   78  185-269    43-139 (257)
157 >2dri_A D-ribose-binding prote  65.8     8.4 0.00025   17.8   7.7   90  146-253     2-95  (139)
158 >3fdx_A Putative filament prot  65.7     8.4 0.00025   17.8   5.2   54  179-245    87-141 (143)
159 >3ixl_A Amdase, arylmalonate d  65.4     4.7 0.00014   20.1   2.5   96  145-247     6-105 (145)
160 >2j5i_A P-hydroxycinnamoyl COA  65.3       5 0.00015   19.8   2.7   79  184-269    35-137 (211)
161 >1mjh_A Protein (ATP-binding d  65.2     8.5 0.00025   17.8   3.8   49  185-245   107-156 (162)
162 >3dzd_A Transcriptional regula  65.2     8.6 0.00025   17.7   6.4   82  146-252     1-86  (128)
163 >1ueh_A Undecaprenyl pyrophosp  65.1     8.6 0.00026   17.7  10.6   15  139-153    12-26  (253)
164 >2ae2_A Protein (tropinone red  64.9     8.7 0.00026   17.7   8.2   92  122-236    24-115 (260)
165 >2rjo_A Twin-arginine transloc  64.7     8.8 0.00026   17.6   8.9   91  145-251     5-99  (152)
166 >1js1_X Transcarbamylase; alph  64.5     8.8 0.00026   17.6   7.5  120  132-260    22-157 (204)
167 >1a04_A Nitrate/nitrite respon  64.2     8.7 0.00026   17.7   3.7   83  145-253     5-94  (128)
168 >2uyg_A 3-dehydroquinate dehyd  64.2     8.9 0.00026   17.6   7.5   69  159-245    26-97  (149)
169 >8abp_A L-arabinose-binding pr  64.1       9 0.00027   17.5   9.5   97  145-260     2-102 (138)
170 >3d02_A Putative LACI-type tra  63.9       9 0.00027   17.5   9.7  100  145-261     4-107 (154)
171 >2gtr_A CDY-like, chromodomain  63.7     9.1 0.00027   17.5   5.8   80  183-269    31-132 (245)
172 >1pfk_A Phosphofructokinase; t  63.6     9.1 0.00027   17.5   8.4  103  144-270     1-139 (185)
173 >1hsk_A UDP-N-acetylenolpyruvo  63.0     6.3 0.00019   18.9   2.8   34  173-221    50-83  (121)
174 >2w3p_A Benzoyl-COA-dihydrodio  62.7     9.4 0.00028   17.3   5.2   82  182-269    59-162 (263)
175 >3fn2_A Putative sensor histid  62.5     6.9 0.00021   18.5   3.0   33  459-492     1-33  (59)
176 >2rff_A Putative nucleotidyltr  62.2     9.6 0.00028   17.3   3.9   39  165-221    26-65  (111)
177 >1to3_A Putative aldolase YIHT  62.2     9.6 0.00028   17.3   9.3   95  159-261   141-242 (304)
178 >1xi3_A Thiamine phosphate pyr  62.0     9.7 0.00029   17.3   5.3   81  182-273   113-205 (215)
179 >3gow_A PAAG, probable enoyl-C  61.8     9.8 0.00029   17.2   6.2   82  182-269    24-122 (254)
180 >2pl1_A Transcriptional regula  61.6     9.8 0.00029   17.2   6.5   82  147-253     2-87  (121)
181 >1yo3_A Dynein light chain 1;   61.6     9.8 0.00029   17.2   3.8   52   16-71     47-101 (102)
182 >3fg9_A Protein of universal s  61.6     9.8 0.00029   17.2   5.6   57  176-245    84-141 (143)
183 >3eod_A Protein HNR; response   61.5     9.8 0.00029   17.2   8.8   88  142-256     4-95  (130)
184 >1uqr_A 3-dehydroquinate dehyd  61.2      10 0.00029   17.1   6.7   81  146-245     2-98  (154)
185 >1e8g_A Vanillyl-alcohol oxida  60.9     5.8 0.00017   19.2   2.3   33  173-220    72-104 (126)
186 >1gg4_A UDP-N-acetylmuramoylal  60.9      10  0.0003   17.1   6.2   85  184-275    22-106 (140)
187 >3js8_A Cholesterol oxidase; c  60.6      10  0.0003   17.1   3.5   35  176-219    28-62  (87)
188 >1yg6_A ATP-dependent CLP prot  60.2      10  0.0003   17.0   7.1   81  179-268    32-114 (193)
189 >3gv0_A Transcriptional regula  60.1      10 0.00031   17.0   8.1   93  146-259     9-107 (156)
190 >2b4a_A BH3024; 10175646, stru  59.8      10 0.00031   17.0   7.9   89  140-254    10-104 (138)
191 >3d54_D Phosphoribosylformylgl  59.4      11 0.00031   16.9   7.3   75  146-244     3-83  (193)
192 >2fep_A Catabolite control pro  58.9      11 0.00032   16.8   8.9   84  144-247    15-102 (156)
193 >1gpm_A GMP synthetase, XMP am  58.7      11 0.00032   16.8   3.5   81  142-245     4-84  (204)
194 >3egc_A Putative ribose operon  58.6      11 0.00032   16.8   8.0   93  146-259     9-105 (159)
195 >1mvo_A PHOP response regulato  58.5      11 0.00032   16.8   9.3  100  144-268     2-106 (136)
196 >3bbn_B Ribosomal protein S2;   58.4     7.8 0.00023   18.1   2.6   44  207-259   156-199 (231)
197 >2zsk_A PH1733, 226AA long hyp  58.2      11 0.00033   16.7   6.6   89  146-250     2-106 (115)
198 >1wot_A Putative minimal nucle  57.9     4.4 0.00013   20.3   1.3   80  157-259    10-91  (98)
199 >1vc4_A Indole-3-glycerol phos  57.9      11 0.00033   16.7   3.9  113  144-274   128-252 (254)
200 >2f6i_A ATP-dependent CLP prot  57.8      11 0.00033   16.7   7.2  111  143-268    13-126 (215)
201 >1gtz_A 3-dehydroquinate dehyd  57.7      11 0.00033   16.7   7.6   83  143-244     4-103 (156)
202 >3bid_A UPF0339 protein NMB108  57.6     9.6 0.00028   17.3   3.0   18   48-65      8-25  (64)
203 >2exr_A Cytokinin dehydrogenas  57.4      11 0.00031   16.9   3.2   34  173-220    63-96  (115)
204 >2nv0_A Glutamine amidotransfe  57.3      11 0.00034   16.6   6.1   74  146-245     2-77  (196)
205 >2ef0_A Ornithine carbamoyltra  56.6      12 0.00034   16.5  11.3  120  121-259    21-143 (182)
206 >2gm3_A Unknown protein; AT3G0  56.3      12 0.00035   16.5   5.2   50  185-246   111-161 (175)
207 >1jvn_A Glutamine, bifunctiona  56.2      12 0.00035   16.5   5.0   76  146-244     5-83  (218)
208 >1kgs_A DRRD, DNA binding resp  56.0      12 0.00035   16.5   3.3   74  155-253    10-87  (124)
209 >2b99_A Riboflavin synthase; l  54.9      12 0.00036   16.3  10.1   93  146-253     3-105 (156)
210 >1zxx_A 6-phosphofructokinase;  54.7      12 0.00036   16.3   8.4  102  145-270     1-138 (182)
211 >3pfk_A Phosphofructokinase; t  54.7      12 0.00037   16.3   7.8  102  145-270     1-140 (186)
212 >1vgv_A UDP-N-acetylglucosamin  54.4      12 0.00037   16.3   7.4   83  176-271    57-154 (213)
213 >3kf8_A Protein STN1; OB fold;  54.2      13 0.00037   16.3  10.1  121    7-127     2-159 (179)
214 >2oyc_A PLP phosphatase, pyrid  53.9      13 0.00037   16.2   4.4   71  146-227    54-132 (166)
215 >2qv7_A Diacylglycerol kinase   53.6      13 0.00038   16.2   7.3  113  138-274    17-137 (140)
216 >1nnx_A Protein YGIW; structur  53.5      13 0.00038   16.2   7.6   69   33-110    38-106 (109)
217 >3clk_A Transcription regulato  53.4      13 0.00038   16.1   6.6   82  145-245     8-93  (159)
218 >1gqo_A Dehydroquinase, dhqase  53.3      13 0.00038   16.1   7.7   81  146-245     1-97  (143)
219 >2gkg_A Response regulator hom  53.3      13 0.00038   16.1   8.0   84  143-251     3-91  (127)
220 >3d3q_A TRNA delta(2)-isopente  53.2      13 0.00038   16.1   3.9   34  144-177     5-38  (182)
221 >2jfq_A Glutamate racemase; ce  53.2      13 0.00038   16.1   7.4  104  142-260    19-128 (174)
222 >1zq6_A Otcase, ornithine carb  53.1      13 0.00038   16.1   5.1  107  143-259    56-177 (222)
223 >3idf_A USP-like protein; univ  53.0      13 0.00039   16.1   3.3   35  208-245   101-136 (138)
224 >2ytx_A Cold shock domain-cont  52.9     8.6 0.00025   17.7   2.1   47  456-502    24-79  (97)
225 >3h5t_A Transcriptional regula  52.2      13  0.0004   16.0   5.7   93  145-259     8-109 (160)
226 >2csu_A 457AA long hypothetica  52.2      10 0.00031   17.0   2.4   88  142-249     5-97  (126)
227 >3hp4_A GDSL-esterase; psychro  51.2      14 0.00041   15.9   8.1   68  144-219     1-77  (185)
228 >2p7n_A Pathogenicity island 1  51.2      14 0.00041   15.9   5.4  113  176-299   231-364 (407)
229 >3c3k_A Alanine racemase; stru  50.6      14 0.00042   15.8   8.8   93  145-259     8-104 (154)
230 >2p0y_A Hypothetical protein L  50.6      14 0.00042   15.8   7.1  131  113-261   110-247 (341)
231 >3fij_A LIN1909 protein; 11172  50.5      14 0.00042   15.8   5.1   43  208-250    61-119 (254)
232 >1wvf_A 4-cresol dehydrogenase  50.2      11 0.00033   16.7   2.3   34  173-221    58-91  (112)
233 >2k7i_A UPF0339 protein ATU023  49.9     7.2 0.00021   18.4   1.3   17   48-64     30-46  (83)
234 >1ka9_H Imidazole glycerol pho  49.7      14 0.00043   15.7   5.0   74  146-245     3-80  (200)
235 >2bvf_A 6-hydroxy-D-nicotine o  49.3      15 0.00043   15.7   3.0   57  149-220    14-72  (252)
236 >3gbv_A Putative LACI-family t  49.1      15 0.00043   15.6   7.6   86  145-248     8-102 (167)
237 >3k8x_A Acetyl-COA carboxylase  49.0      15 0.00044   15.6   6.4   29  184-219    91-119 (255)
238 >1gud_A ALBP, D-allose-binding  48.9      15 0.00044   15.6   7.5  102  146-264     2-108 (153)
239 >3dbi_A Sugar-binding transcri  48.6      15 0.00044   15.6   9.1  123  119-261    34-163 (185)
240 >2ywd_A Glutamine amidotransfe  48.1      15 0.00045   15.5   3.9   74  146-245     3-79  (191)
241 >1pk6_C C1Q, complement C1Q su  47.6      15 0.00046   15.5   4.2   59   42-101    40-118 (129)
242 >2k49_A UPF0339 protein SO_388  47.6      13 0.00039   16.0   2.4   16   49-64     11-26  (118)
243 >1f0x_A DLDH, D-lactate dehydr  47.1      16 0.00046   15.4   3.4   33  173-220    47-79  (103)
244 >2ppv_A Uncharacterized protei  47.0      16 0.00046   15.4   4.6  123  117-260   106-235 (332)
245 >3brc_A Conserved protein of u  46.8      16 0.00047   15.4   4.5   63  146-217     1-65  (120)
246 >2d59_A Hypothetical protein P  46.7      16 0.00047   15.3   3.0   98  143-260    20-121 (144)
247 >3gt7_A Sensor protein; struct  46.4      16 0.00047   15.3  10.0   94  141-259     3-100 (154)
248 >3jvd_A Transcriptional regula  45.8      16 0.00048   15.2   4.6   86  118-215    36-126 (205)
249 >1rkq_A Hypothetical protein Y  45.7      16 0.00048   15.2   3.3  134  100-262     4-150 (176)
250 >1u0l_A Probable GTPase ENGC;   45.5      16 0.00049   15.2   6.3   49   35-88      9-57  (73)
251 >2vqe_I 30S ribosomal protein   45.3      13 0.00039   16.0   2.1   35  182-222    38-72  (128)
252 >1amf_A Molybdate transport pr  45.2      17 0.00049   15.2   3.7   45  123-167    62-110 (126)
253 >1s8n_A Putative antiterminato  45.1      17 0.00049   15.2   7.6   87  142-252    10-97  (143)
254 >1kny_A Kntase, kanamycin nucl  45.0      17 0.00049   15.1   2.9   49  156-222    13-64  (126)
255 >3cfy_A Putative LUXO represso  44.9      17  0.0005   15.1   6.5   80  145-251     4-87  (137)
256 >3i1m_I 30S ribosomal protein   44.7      14 0.00041   15.8   2.1   17  206-222    58-74  (130)
257 >2rdm_A Response regulator rec  44.6      17  0.0005   15.1   8.4   90  145-260     5-99  (132)
258 >1gpw_B Amidotransferase HISH;  44.6      17  0.0005   15.1   3.9   39  206-244    40-81  (201)
259 >1vma_A Cell division protein   44.5      17  0.0005   15.1   6.6   13  209-221   251-268 (306)
260 >3gjz_A Microcin immunity prot  44.4      17  0.0005   15.1   5.7   65  186-253   101-168 (194)
261 >3bbn_I Ribosomal protein S9;   44.3      12 0.00036   16.4   1.8   16  207-222   126-141 (197)
262 >2dgd_A 223AA long hypothetica  44.3      17  0.0005   15.1   8.8   88  145-245     1-94  (95)
263 >2j6b_A AFV3-109; sulfolobus,   43.0      18 0.00052   14.9   3.1   24  228-253    26-49  (109)
264 >2j85_A STIV B116; viral prote  42.4      10  0.0003   17.1   1.1   11  240-250    42-52  (122)
265 >3brq_A HTH-type transcription  42.3      18 0.00054   14.8   9.7   97  143-259    17-119 (144)
266 >2uva_G Fatty acid synthase be  42.2      18 0.00054   14.8   5.2   41  209-249   160-207 (383)
267 >2fyi_A HTH-type transcription  42.0      18 0.00054   14.8   5.2   58  142-215    12-70  (132)
268 >3fw9_A Reticuline oxidase; BI  42.0      18 0.00054   14.8   2.6  107  149-270    15-180 (258)
269 >1sr3_A APO-CCME; OB fold, bet  42.0      18 0.00054   14.8   9.8   88   12-108     6-97  (136)
270 >3i1m_B 30S ribosomal protein   42.0      18 0.00052   14.9   2.3   43  208-259   112-154 (196)
271 >3exa_A TRNA delta(2)-isopente  41.9      18 0.00054   14.8   4.2   32  146-177     3-34  (240)
272 >2dnf_A Doublecortin domain-co  41.8      13  0.0004   16.0   1.7   40  449-488    46-86  (108)
273 >1aj0_A DHPS, dihydropteroate   41.6      15 0.00046   15.4   2.0  116   82-246    11-139 (282)
274 >3ff6_A Acetyl-COA carboxylase  41.5      19 0.00055   14.7   4.8   25  209-238   168-192 (262)
275 >3gh1_A Predicted nucleotide-b  41.4      19 0.00055   14.7   4.1   46  209-261   166-222 (380)
276 >2ab0_A YAJL; DJ-1/THIJ superf  41.1      19 0.00056   14.7   4.6   93  144-246     1-105 (205)
277 >1t70_A Phosphatase; crystal,   41.0      19 0.00056   14.7   6.4   77  159-253    18-94  (255)
278 >3ksm_A ABC-type sugar transpo  40.6      19 0.00056   14.6   7.7   89  147-251     2-94  (140)
279 >2zkq_i 40S ribosomal protein   40.3      16 0.00046   15.4   1.8   32  206-238    63-94  (146)
280 >1meo_A Phosophoribosylglycina  40.3      19 0.00057   14.6   6.7   31  146-176     1-32  (209)
281 >1iuk_A Hypothetical protein T  40.2      19 0.00057   14.6   2.4   96  143-260    11-114 (140)
282 >2w5e_A Putative serine protea  40.0      19 0.00057   14.6   4.8   42  461-502    21-62  (80)
283 >3beo_A UDP-N-acetylglucosamin  39.9      19 0.00058   14.5   6.3   42  230-271    99-141 (164)
284 >2c92_A 6,7-dimethyl-8-ribityl  39.4      20 0.00059   14.5  10.1   91  143-248    15-117 (160)
285 >2k8e_A UPF0339 protein YEGP;   39.3      20 0.00059   14.5   2.3   80   49-135    27-125 (130)
286 >1on3_A Methylmalonyl-COA carb  39.0      20 0.00059   14.4   6.2   98  172-276    54-162 (229)
287 >3bic_A Methylmalonyl-COA muta  38.9      20 0.00059   14.4   9.2  111  146-275    22-140 (179)
288 >1tdj_A Biosynthetic threonine  38.8      14 0.00042   15.8   1.4   65  165-247    39-113 (236)
289 >2vqe_B 30S ribosomal protein   38.4      20  0.0006   14.4   2.8   66  207-296   157-222 (256)
290 >1zjj_A Hypothetical protein P  38.4      20  0.0006   14.4   4.3   72  146-228    34-111 (131)
291 >2gek_A Phosphatidylinositol m  37.7      21 0.00062   14.3   8.2   85  174-265    13-113 (169)
292 >3d6n_B Aspartate carbamoyltra  37.6      21 0.00062   14.3   8.4   90  138-247    27-120 (144)
293 >1k68_A Phytochrome response r  37.6      21 0.00062   14.3   4.3   90  146-253     3-100 (140)
294 >1vhq_A Enhancing lycopene bio  37.6      21 0.00062   14.3   4.5  101  144-245     5-138 (232)
295 >2k5n_A Putative cold-shock pr  37.5      21 0.00062   14.3   4.3   46  459-504    13-65  (74)
296 >1n8f_A DAHP synthetase; (beta  37.4      21 0.00062   14.2   9.8   44  205-252   223-271 (350)
297 >2jba_A Phosphate regulon tran  37.4      21 0.00062   14.2   6.9   86  145-255     2-91  (127)
298 >3h75_A Periplasmic sugar-bind  37.3      21 0.00063   14.2   7.5   97  146-259     4-109 (208)
299 >1t3i_A Probable cysteine desu  37.2      21 0.00063   14.2   5.7   92  145-249    29-120 (168)
300 >3lao_A Enoyl-COA hydratase/is  36.8      11 0.00033   16.7   0.6   79  184-269    38-136 (258)
301 >2nn6_G Exosome complex exonuc  36.8      21 0.00063   14.2   2.8   76   35-116     7-85  (87)
302 >2ekp_A 2-deoxy-D-gluconate 3-  36.6      22 0.00064   14.1   9.4   82  146-236     2-98  (239)
303 >1yg2_A Gene activator APHA; v  36.2      20 0.00059   14.5   1.8   54  112-169    36-89  (89)
304 >2fn9_A Ribose ABC transporter  35.8      22 0.00066   14.0   9.6   85  146-248     3-91  (150)
305 >2h0a_A TTHA0807, transcriptio  35.6      22 0.00066   14.0   4.0   92  147-259     1-99  (142)
306 >1l1j_A Heat shock protease HT  35.3      20 0.00059   14.5   1.7   14   79-92    127-140 (239)
307 >3ezl_A Acetoacetyl-COA reduct  35.3      22 0.00066   14.0   5.1   69  161-237    52-120 (256)
308 >3gvc_A Oxidoreductase, probab  35.2      23 0.00067   14.0   8.7   90  139-237    22-132 (277)
309 >2qf3_A Protease DEGS; peripla  35.2      23 0.00067   14.0   3.0   12   81-92    137-148 (243)
310 >2z08_A Universal stress prote  35.0      23 0.00067   13.9   6.6   55  179-245    80-135 (137)
311 >1uzm_A 3-oxoacyl-[acyl-carrie  34.7      23 0.00068   13.9   9.5   88  140-236     9-109 (247)
312 >3c3m_A Response regulator rec  34.6      23 0.00068   13.9   7.1   83  146-253     4-90  (108)
313 >1pk6_B C1Q, complement C1Q su  34.6      23 0.00068   13.9   6.1   59   42-101    40-121 (132)
314 >1x3l_A Hypothetical protein P  34.5      14 0.00043   15.7   0.9   31  182-221    82-113 (244)
315 >2hig_A 6-phospho-1-fructokina  34.5      23 0.00068   13.9   6.8  102  143-255    68-205 (249)
316 >2i4r_A V-type ATP synthase su  34.5      23 0.00068   13.9   3.6   80  144-249     8-88  (102)
317 >3fyf_A Protein BVU-3222; stru  34.4      23 0.00069   13.9   4.6   20   87-106   131-150 (176)
318 >3bbl_A Regulatory protein of   34.2      23 0.00069   13.9   5.4   30   62-91     63-95  (287)
319 >3lou_A Formyltetrahydrofolate  34.1      23 0.00069   13.8   7.2   65  145-219     2-89  (199)
320 >3jyv_I 40S ribosomal protein   34.0      23 0.00067   13.9   1.8   30  205-239    54-83  (138)
321 >3k4h_A Putative transcription  33.9      23 0.00069   13.8   9.0   87  145-252     8-103 (160)
322 >2fvy_A D-galactose-binding pe  33.9      24  0.0007   13.8  10.2  100  146-264     3-108 (164)
323 >1y7o_A ATP-dependent CLP prot  33.8      24  0.0007   13.8   5.8   78  183-270    13-93  (176)
324 >2k6l_A Putative uncharacteriz  33.7      18 0.00053   14.8   1.3   25  215-239    24-48  (51)
325 >2ho4_A Haloacid dehalogenase-  33.5      24  0.0007   13.8   4.5   83  120-227    28-117 (140)
326 >2jli_A YSCU, YOP proteins tra  33.2      22 0.00066   14.0   1.7   34  224-262    85-118 (123)
327 >2dum_A Hypothetical protein P  33.1      24 0.00071   13.7   5.8   52  186-250   105-158 (170)
328 >2zwm_A Transcriptional regula  33.0      24 0.00071   13.7   7.2   84  145-253     2-86  (130)
329 >3hcw_A Maltose operon transcr  33.0      24 0.00072   13.7   8.9   95  145-260     7-110 (163)
330 >1qdl_B Protein (anthranilate   32.9      24 0.00072   13.7   8.4   80  146-244     2-81  (195)
331 >2cby_A ATP-dependent CLP prot  32.5      25 0.00073   13.6   8.9  109  150-271     8-118 (208)
332 >3hz6_A Xylulokinase; xylulose  32.5      25 0.00073   13.6   5.4   41  189-241   149-189 (270)
333 >2ze6_A Isopentenyl transferas  32.4      25 0.00073   13.6   2.4   29  147-175     2-30  (125)
334 >3l07_A Bifunctional protein f  32.3      25 0.00073   13.6   4.9   79  144-238    25-109 (134)
335 >1c0m_A Protein (integrase); H  32.3      25 0.00073   13.6   2.2   16  458-473    23-39  (67)
336 >1xny_A Pccase, propionyl-COA   32.1      25 0.00074   13.6   3.8   93  171-270    55-163 (252)
337 >1zl0_A Hypothetical protein P  32.0      25 0.00074   13.6   6.3   77  173-254    95-174 (193)
338 >3f9i_A 3-oxoacyl-[acyl-carrie  31.9      25 0.00074   13.6   7.4   88  136-232     4-108 (249)
339 >1m1n_A Nitrogenase molybdenum  31.7      23 0.00068   13.9   1.6   33  145-177    89-125 (157)
340 >3b6y_A Gamma-interferon-induc  31.5      25 0.00075   13.5   7.0   52   36-90     10-61  (90)
341 >1a4i_A Methylenetetrahydrofol  31.4      25 0.00075   13.5   4.9   79  143-237    26-111 (144)
342 >1jkx_A GART;, phosphoribosylg  31.3      26 0.00076   13.5   6.2   29  147-175     2-31  (212)
343 >2yuj_A Ubiquitin fusion degra  31.2      26 0.00076   13.5   2.5   48  448-506    14-61  (75)
344 >2zkq_b 40S ribosomal protein   31.1      26 0.00076   13.5   2.1   44  207-259   117-160 (295)
345 >3foz_A TRNA delta(2)-isopente  31.0      26 0.00076   13.4   4.1   35  143-177     7-41  (232)
346 >3ixl_A Amdase, arylmalonate d  31.0      26 0.00076   13.4  10.2   89  145-246     1-95  (95)
347 >1usg_A Leucine-specific bindi  30.7      26 0.00077   13.4   5.3   87  145-249    17-107 (150)
348 >3eaf_A ABC transporter, subst  30.3      26 0.00078   13.4   9.3  107  144-266    19-133 (181)
349 >2oq0_A Gamma-interferon-induc  30.1      27 0.00079   13.3   7.0   38   50-90     28-65  (92)
350 >3k9c_A Transcriptional regula  30.0      27 0.00079   13.3   7.0   91  146-259    13-106 (159)
351 >1b0a_A Protein (fold bifuncti  29.9      27 0.00079   13.3   2.6   88  131-251    33-122 (149)
352 >3cnh_A Hydrolase family prote  29.8      27  0.0008   13.3   3.5   52  146-198    32-85  (130)
353 >3kp1_A D-ornithine aminomutas  29.6      27  0.0008   13.3   5.4   92  168-274    47-142 (179)
354 >1w6u_A 2,4-dienoyl-COA reduct  29.6      27  0.0008   13.3   7.4   79  151-237    36-114 (262)
355 >2i0f_A 6,7-dimethyl-8-ribityl  29.4      27 0.00081   13.2  11.6  103  141-252     8-122 (157)
356 >3c8c_A Methyl-accepting chemo  29.3      27 0.00081   13.2   3.1   36  441-479    43-78  (141)
357 >3g1w_A Sugar ABC transporter;  28.8      28 0.00082   13.2   8.8   97  144-261    18-124 (134)
358 >2a9v_A GMP synthase; NP_39440  28.8      28 0.00082   13.2   5.7   84  139-245     7-90  (212)
359 >3crm_A TRNA delta(2)-isopente  28.8      28 0.00082   13.2   4.1   32  145-176     4-35  (239)
360 >1ylq_A Putative nucleotidyltr  28.8      28 0.00082   13.2   2.9   48  158-222     3-51  (96)
361 >3cnb_A DNA-binding response r  28.8      28 0.00082   13.2   6.1   90  144-258     7-102 (143)
362 >1kz1_A 6,7-dimethyl-8-ribityl  28.8      28 0.00082   13.2   9.7  110  143-267    15-137 (159)
363 >1tg6_A Putative ATP-dependent  28.6      28 0.00083   13.1   8.8   98  158-270    71-172 (277)
364 >2o2z_A Hypothetical protein;   28.4      28 0.00083   13.1   6.0  106  139-260   124-236 (323)
365 >1yb1_A 17-beta-hydroxysteroid  28.3      28 0.00084   13.1   8.1   86  137-230    22-130 (257)
366 >2hqr_A Putative transcription  28.1      29 0.00084   13.1   4.6   75  155-256     8-84  (99)
367 >1yio_A Response regulatory pr  27.9      29 0.00085   13.0   7.3   83  145-252     4-90  (143)
368 >2vc6_A MOSA, dihydrodipicolin  27.9      29 0.00085   13.0   4.1   41  154-194   109-150 (236)
369 >3e3m_A Transcriptional regula  27.9      29 0.00085   13.0   9.2  109  119-247    43-156 (221)
370 >3lop_A Substrate binding peri  27.8      29 0.00085   13.0   3.8   98  143-258    17-118 (162)
371 >3fan_A Non-structural protein  27.8      21 0.00063   14.2   0.8   25  468-492    39-63  (164)
372 >1dz3_A Stage 0 sporulation pr  27.6      29 0.00086   13.0   3.4   47  189-250    36-89  (109)
373 >3bi8_A Dihydrodipicolinate sy  27.6      29 0.00086   13.0   6.6   78  153-249   109-189 (291)
374 >2j9r_A Thymidine kinase; TK1,  27.5      29 0.00086   13.0   6.7  101  143-253    25-140 (167)
375 >3b9e_A Chitinase A; TIM-barre  27.5      29 0.00086   13.0   5.2   50   63-113    43-100 (125)
376 >3l07_A Bifunctional protein f  27.5      29 0.00086   13.0   2.4   83  138-253    42-126 (151)
377 >1vr5_A Oligopeptide ABC trans  27.4      29 0.00086   13.0   5.3  136  120-271    81-222 (247)
378 >3a8t_A Adenylate isopentenylt  27.3      29 0.00087   13.0   4.1   34  143-176    37-70  (228)
379 >3eqz_A Response regulator; st  27.2      22 0.00067   14.0   0.9   79  147-253     5-89  (135)
380 >3bch_A 40S ribosomal protein   27.1      30 0.00087   12.9   2.7   44  207-259   150-193 (253)
381 >2r5f_A Transcriptional regula  26.8      30 0.00088   12.9   3.9   60  160-224    10-73  (264)
382 >1ja9_A 4HNR, 1,3,6,8-tetrahyd  26.7      30 0.00089   12.9   7.0   80  150-237    49-128 (274)
383 >3kke_A LACI family transcript  26.7      30 0.00089   12.9   8.2   84  146-250    16-103 (166)
384 >2fds_A Orotidine-monophosphat  26.4      17 0.00051   15.0   0.2   26  162-187   269-295 (352)
385 >2q7x_A UPF0052 protein SP_156  26.4      30  0.0009   12.8   3.9   99  147-260     6-126 (210)
386 >2ipi_A Aclacinomycin oxidored  26.0      30 0.00087   12.9   1.3   15  254-268   172-186 (278)
387 >1pg5_A Aspartate carbamoyltra  26.0      31 0.00091   12.8  10.4  107  132-259    24-138 (176)
388 >1p2f_A Response regulator; DR  26.0      31 0.00091   12.8   3.4   83  146-256     3-89  (146)
389 >2bzr_A Propionyl-COA carboxyl  26.0      31 0.00091   12.8   5.9   92  171-269    53-156 (235)
390 >3bf0_A Protease 4; bacterial,  25.9      31 0.00091   12.8   2.5   91  177-274    62-155 (208)
391 >1vi6_A 30S ribosomal protein   25.8      31 0.00091   12.7   2.6  103  148-259    44-157 (208)
392 >2fl8_A Baseplate structural p  25.8      31 0.00092   12.7   3.5   18   54-71     73-90  (173)
393 >2bty_A Acetylglutamate kinase  25.8      31 0.00092   12.7   3.1   30  224-253   145-174 (282)
394 >3a10_A Response regulator; ph  25.7      31 0.00092   12.7   9.1   92  145-261     1-96  (116)
395 >2ywj_A Glutamine amidotransfe  25.6      31 0.00092   12.7   3.3   39  206-245    35-73  (186)
396 >1mio_A Nitrogenase molybdenum  25.5      31 0.00093   12.7   2.3   54  144-197    66-124 (132)
397 >1p6q_A CHEY2; chemotaxis, sig  25.5      31 0.00093   12.7   6.9   87  145-256     6-97  (129)
398 >2qu7_A Putative transcription  25.4      31 0.00093   12.7   6.7   91  146-259     9-102 (152)
399 >2fr1_A Erythromycin synthase,  25.4      31 0.00093   12.7   3.9   26  146-171    35-60  (184)
400 >2b8n_A Glycerate kinase, puta  25.3      14 0.00041   15.9  -0.5   41  183-232    75-127 (227)
401 >2duw_A Putative COA-binding p  25.2      32 0.00094   12.7   2.2  100  140-261     8-115 (145)
402 >2zvf_A Alanyl-tRNA synthetase  25.2      32 0.00094   12.7   9.4   32  144-175    46-77  (145)
403 >1uf0_A Serine/threonine-prote  25.0      32 0.00094   12.6   1.8   37  450-486    47-84  (116)
404 >2bbr_A Viral CAsp8 and FADD-l  24.9      14 0.00043   15.7  -0.5   20  148-167    39-58  (88)
405 >2qo3_A Eryaii erythromycin po  24.6      32 0.00096   12.6   3.2   58  158-228    38-99  (120)
406 >2o20_A Catabolite control pro  24.5      32 0.00096   12.6   9.8  108  118-245    35-147 (202)
407 >2d0b_A RNAse HIII, ribonuclea  24.3      33 0.00097   12.5   1.9   20  172-191    41-63  (82)
408 >1q0q_A 1-deoxy-D-xylulose 5-p  24.2      33 0.00097   12.5   5.9   89  143-247     7-109 (133)
409 >1zgz_A Torcad operon transcri  24.2      33 0.00097   12.5   9.3   85  144-253     1-86  (122)
410 >1vl8_A Gluconate 5-dehydrogen  24.2      33 0.00097   12.5   7.4   80  150-237    49-128 (267)
411 >3gg8_A Pyruvate kinase; malar  24.2      33 0.00097   12.5   5.8  128  104-246    63-216 (277)
412 >1srr_A SPO0F, sporulation res  24.2      33 0.00097   12.5   9.3   87  145-258     3-93  (124)
413 >3loq_A Universal stress prote  24.1      33 0.00097   12.5   4.5   34  209-245   252-287 (294)
414 >2eq5_A 228AA long hypothetica  24.1      33 0.00098   12.5   4.2   83  144-244    11-100 (101)
415 >2f9i_B Acetyl-coenzyme A carb  24.0      33 0.00098   12.5   5.5   92  172-270    62-166 (224)
416 >1qwj_A Cytidine monophospho-N  24.0      33 0.00098   12.5   1.4   29  222-250   103-134 (206)
417 >1vjr_A 4-nitrophenylphosphata  24.0      33 0.00098   12.5   5.7   83  120-227    38-126 (145)
418 >1geg_A Acetoin reductase; SDR  24.0      33 0.00098   12.5   8.3   91  122-236    17-107 (256)
419 >2yx1_A Hypothetical protein M  23.9      33 0.00098   12.5   1.8   21  120-140    12-32  (70)
420 >2k6p_A Uncharacterized protei  23.9      33 0.00098   12.5   1.4   41  457-500    22-62  (92)
421 >1wr8_A Phosphoglycolate phosp  23.9      33 0.00098   12.5   7.7  131  101-267     3-143 (162)
422 >3fxq_A LYSR type regulator of  23.8      33 0.00098   12.5   4.8   32  147-178     4-36  (214)
423 >2e8b_A Probable molybdopterin  23.8      33 0.00098   12.5   4.5   16  182-197    80-95  (201)
424 >2j9i_A Glutamate-ammonia liga  23.8      33 0.00099   12.5   1.8   26   36-61     24-50  (168)
425 >3g1w_A Sugar ABC transporter;  23.8      33 0.00099   12.5   9.6   84  145-246     4-92  (171)
426 >1wek_A Hypothetical protein T  23.7      33 0.00099   12.4   2.1   29  231-259    44-72  (201)
427 >2vpi_A GMP synthase; guanine   23.7      33 0.00099   12.4   1.9   81  141-244    20-100 (218)
428 >1jx6_A LUXP protein; protein-  23.7      33 0.00099   12.4   4.5   95  144-259    18-120 (133)
429 >2qyw_A Vesicle transport thro  23.5      34   0.001   12.4   9.6   14  279-292    18-31  (102)
430 >3cfu_A Uncharacterized lipopr  23.4      17 0.00051   15.0  -0.3   72   34-107    48-126 (159)
431 >3i09_A Periplasmic branched-c  23.4      34   0.001   12.4   8.2  108  144-269     3-128 (184)
432 >2fr1_A Erythromycin synthase,  23.3      34   0.001   12.4   9.3   55  172-235    95-149 (266)
433 >2zay_A Response regulator rec  23.3      34   0.001   12.4   4.6   85  144-253     7-95  (147)
434 >2i2x_B MTAC, methyltransferas  23.2      34   0.001   12.4  10.7  114  142-274     2-120 (140)
435 >3grf_A Ornithine carbamoyltra  23.2      34   0.001   12.4   9.2  103  136-259    34-143 (193)
436 >1z56_A Ligase interacting fac  23.1      34   0.001   12.3   4.0   33  420-452   201-233 (246)
437 >1ys7_A Transcriptional regula  22.9      34   0.001   12.3   8.9   83  146-253     8-94  (131)
438 >1pzn_A RAD51, DNA repair and   22.9      26 0.00078   13.4   0.6   40  215-263    53-92  (95)
439 >2i0k_A Oxidoreductase; MIX al  22.8      35   0.001   12.3   3.0   11  122-132   118-128 (220)
440 >2hi0_A Putative phosphoglycol  22.8      35   0.001   12.3  12.2  122  120-274    27-149 (152)
441 >2qvg_A Two component response  22.7      35   0.001   12.3   4.8   98  141-257     3-108 (143)
442 >3hbx_A GAD 1, glutamate decar  22.7      35   0.001   12.3   7.4   66  119-186    26-92  (178)
443 >1pix_A Glutaconyl-COA decarbo  22.7      35   0.001   12.3   5.8   98  171-275    45-157 (243)
444 >1nha_A TFIIF-alpha, transcrip  22.6      34   0.001   12.4   1.1   10   50-59     73-82  (82)
445 >2hw2_A Rifampin ADP-ribosyl t  22.5      16 0.00047   15.3  -0.6   33   35-72     25-57  (111)
446 >2obx_A DMRL synthase 1, 6,7-d  22.4      35   0.001   12.2   9.1   95  143-250     9-117 (157)
447 >3k9f_C DNA topoisomerase 4 su  22.4      35   0.001   12.2   2.0   27  214-240     5-32  (43)
448 >2b39_A C3; thioester, immune   22.2      35   0.001   12.2   2.8   70   35-106    22-102 (142)
449 >1al3_A Cys regulon transcript  22.2      36  0.0011   12.2   3.0   93  146-261    95-189 (227)
450 >1yzf_A Lipase/acylhydrolase;   22.1      36  0.0011   12.2   4.7   66  146-219     2-78  (195)
451 >2j58_A WZA, outer membrane li  22.1      36  0.0011   12.2   3.3   31   15-45     53-83  (84)
452 >3dv8_A Transcriptional regula  22.1      34   0.001   12.3   1.0   43  259-301    92-134 (146)
453 >3ga2_A Endonuclease V; alpha-  22.0      36  0.0011   12.2   2.6   34  241-274   159-198 (219)
454 >2rfg_A Dihydrodipicolinate sy  22.0      36  0.0011   12.2   6.7   84  153-259   108-194 (243)
455 >3ezx_A MMCP 1, monomethylamin  22.0      36  0.0011   12.2   5.9  112  144-274     6-126 (130)
456 >2z1n_A Dehydrogenase; reducta  21.9      36  0.0011   12.2   7.4   79  150-236    35-113 (260)
457 >2hsg_A Glucose-resistance amy  21.8      36  0.0011   12.2   7.3   96  146-262     3-102 (124)
458 >3cs3_A Sugar-binding transcri  21.7      36  0.0011   12.1   8.2   87  145-259     8-98  (147)
459 >2zsj_A Threonine synthase; PL  21.6      36  0.0011   12.1   3.6   83  179-279    58-148 (220)
460 >2f9y_B Acetyl-coenzyme A carb  21.6      36  0.0011   12.1   6.1  133  130-269     7-168 (249)
461 >3g85_A Transcriptional regula  21.6      36  0.0011   12.1   3.5   93  145-258    11-108 (155)
462 >3hs3_A Ribose operon represso  21.6      36  0.0011   12.1   7.0   77  146-246    11-91  (151)
463 >3c1m_A Probable aspartokinase  21.6      36  0.0011   12.1   2.9   14  210-223    33-46  (304)
464 >1rvv_A Riboflavin synthase; t  21.3      37  0.0011   12.1  11.0  102  139-253     6-121 (154)
465 >3gg8_A Pyruvate kinase; malar  21.3      37  0.0011   12.1   3.8   46  457-504    14-70  (96)
466 >1zyo_A Serine protease; beta-  21.2      37  0.0011   12.1   2.1   11   81-91    107-117 (191)
467 >1v8z_A Tryptophan synthase be  21.0      37  0.0011   12.0   3.2   35  181-222    88-123 (265)
468 >1duv_G Octase-1, ornithine tr  21.0      37  0.0011   12.0   7.5   99  140-260    38-143 (183)
469 >1zh2_A KDP operon transcripti  20.9      37  0.0011   12.0   7.9   83  146-255     2-87  (121)
470 >1mio_B Nitrogenase molybdenum  20.8      38  0.0011   12.0   1.7   44  187-238    46-89  (108)
471 >1h7e_A 3-deoxy-manno-octuloso  20.8      38  0.0011   12.0   1.3   16  146-161    43-58  (245)
472 >1tdz_A Formamidopyrimidine-DN  20.8      38  0.0011   12.0   1.4   42  226-271     4-54  (136)
473 >2w19_A 3-deoxy-D-arabino-hept  20.7      38  0.0011   12.0   5.4   85  185-290   321-406 (472)
474 >1tjy_A Sugar transport protei  20.6      38  0.0011   12.0   9.6   85  145-246     3-91  (165)
475 >1dxh_A Ornithine carbamoyltra  20.6      38  0.0011   12.0  10.9  125  107-259    14-143 (181)
476 >2qq6_A Mandelate racemase/muc  20.6      38  0.0011   12.0   4.5   12  209-220    96-107 (269)
477 >1jdp_A NPR-C, atrial natriure  20.5      38  0.0011   11.9   9.2   96  143-254     7-122 (209)
478 >2d00_A V-type ATP synthase su  20.4      38  0.0011   11.9   4.5   78  144-247     2-79  (79)
479 >2iss_D Glutamine amidotransfe  20.3      38  0.0011   11.9   7.1   80  140-245    15-96  (208)
480 >2i6u_A Otcase, ornithine carb  20.1      39  0.0011   11.9  11.2  103  135-259    28-137 (178)
481 >1dcf_A ETR1 protein; beta-alp  20.1      39  0.0011   11.9   7.1   88  144-257     6-100 (136)
482 >1ofu_A FTSZ, cell division pr  20.1      39  0.0011   11.9   7.3   66  144-215    98-164 (320)
483 >3g51_A Ribosomal protein S6 k  20.0      35   0.001   12.2   0.7   36  228-267    39-74  (83)
484 >1b9m_A Protein (mode); DNA-bi  20.0      39  0.0011   11.9   2.4   30  265-294    35-64  (112)

No 1  
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:1-110)
Probab=97.71  E-value=0.00034  Score=57.07  Aligned_cols=80  Identities=16%  Similarity=0.102  Sum_probs=66.1

Q ss_pred             CCCEEEEEEECCCCCC-CCCCEEE--EEEECCCCEEEEEEECCC--CCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEE
Q ss_conf             1718999997054356-8886279--998748947999997352--1058668145988999999667528843799999
Q gi|254780791|r   32 LSHVCVRGEISGYRGI-HSSGHAY--FSLKDNHSRIDAIIWKGT--LNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIE  106 (529)
Q Consensus        32 ~~~~~v~gEis~~~~~-~~sGH~Y--f~lkd~~a~i~~~~~~~~--~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~  106 (529)
                      -..|++.|.|++.+.. .++|+-|  |+|-|..+.|.|++|...  +....-.+++|.-|++.|+++++.-.|.+++.+.
T Consensus        17 ~~~v~i~G~V~~~~~~~tK~G~~~~~~~l~D~tg~ie~~~F~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~~l~v~   96 (110)
T 3f2b_A           17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVRDLVIIAN   96 (110)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEE
T ss_conf             67699999998778787058988999999827886899995587432889850679968999998851577774278721


Q ss_pred             EEEEC
Q ss_conf             71016
Q gi|254780791|r  107 SLIPS  111 (529)
Q Consensus       107 ~i~~~  111 (529)
                      .|.+.
T Consensus        97 ~i~~i  101 (110)
T 3f2b_A           97 DLNEI  101 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEC
T ss_conf             23654


No 2  
>>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:160-248)
Probab=96.89  E-value=0.0012  Score=52.23  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             CEEEEEEECCCCCCC-CCCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEC
Q ss_conf             189999970543568-8862-79998748947999997352105866814598899999966752884379999971016
Q gi|254780791|r   34 HVCVRGEISGYRGIH-SSGH-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPS  111 (529)
Q Consensus        34 ~~~v~gEis~~~~~~-~sGH-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~  111 (529)
                      .+-|.|+|.+.+..+ ++|- +.++|.|..+.|.|++|...+......++.|..+++.|+|..-.-+|++|++..+++..
T Consensus         8 ~v~i~g~V~~~~~~~~~~~~~~~~~l~D~tg~i~~v~F~~~~~~~~~~l~~g~~~~v~Gkv~~~~~~g~~~i~~p~~~~~   87 (89)
T 1gm5_A            8 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPK   87 (89)
T ss_dssp             CCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEEEEECSCCTTSSCCEEEEEEECS
T ss_pred             EEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEECCEEECC
T ss_conf             79999999997555579971189999989868999997987999765035999899999998768788699629877435


No 3  
>>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:1024-1128)
Probab=96.74  E-value=0.0065  Score=45.57  Aligned_cols=76  Identities=14%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             CCEEEEEEECCCCCC-CCCCEE--EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Q ss_conf             718999997054356-888627--99987489479999973521058668145988999999667528843799999710
Q gi|254780791|r   33 SHVCVRGEISGYRGI-HSSGHA--YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLI  109 (529)
Q Consensus        33 ~~~~v~gEis~~~~~-~~sGH~--Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~  109 (529)
                      ..+++.|-|++++.. .++|..  +|+|-|..+.+.|++|...+....-.++.|.-|++.|+++ |  +++++|.++.+.
T Consensus        20 ~~v~i~G~v~~~~~~~tk~G~~~a~~~leD~tg~~e~~~F~~~~~~~~~~l~~~~~v~i~g~v~-~--~~~~~l~v~~i~   96 (105)
T 2hpi_A           20 PKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVE-K--GEELRVLAQAVW   96 (105)
T ss_dssp             CEEEEEEEECCC------------CEEEEETTEEEEEC-------------CTTCEEEEEEEEC--------CEEEEEEE
T ss_pred             CEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEE-E--CCCEEEEEEECC
T ss_conf             7899999998999701789997999999989987899984799999988851498799999999-7--895289996636


Q ss_pred             EC
Q ss_conf             16
Q gi|254780791|r  110 PS  111 (529)
Q Consensus       110 ~~  111 (529)
                      +-
T Consensus        97 ~l   98 (105)
T 2hpi_A           97 TL   98 (105)
T ss_dssp             EH
T ss_pred             CH
T ss_conf             59


No 4  
>>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} (A:)
Probab=96.52  E-value=0.048  Score=37.84  Aligned_cols=104  Identities=17%  Similarity=0.162  Sum_probs=76.2

Q ss_pred             CCCCCCCC-CCCHHHHHHHHHH------HH--HH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCC-EEEEEEECCCCC
Q ss_conf             88888898-6229999999999------97--40-01718999997054356888627999874894-799999735210
Q gi|254780791|r    6 QKNSLDHP-EYSVSELSYHLKH------IV--ES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHS-RIDAIIWKGTLN   74 (529)
Q Consensus         6 ~~~~~~~~-~~svs~l~~~i~~------~l--~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a-~i~~~~~~~~~~   74 (529)
                      .+|..+.. |.++++|......      .+  .+ .+..|+|.|-|.+++.  ..+.+-|+|-|..+ -|.|++|.....
T Consensus        11 ~~p~~~~~~pv~i~~l~~~~~~~~~~~~~~~~~~~~i~~V~ivG~V~~~~~--~~~~~~~~IdD~TG~~i~~~~~~~~~~   88 (159)
T 3kf6_A           11 QFPTLSRWNPMFISDVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDI--YEGKHVLTVDDCSGMVLRVVFIIQDDF   88 (159)
T ss_dssp             -----CCCCBCCHHHHTTCBCCCC---CCEEETTEEECEEEEEEEEEEEEE--ETTEEEEEEECSSSCEEEEEEEGGGCH
T ss_pred             CCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEEEEEEEEE--ECCEEEEEEECCCCCCEEEEEECCCCC
T ss_conf             185210044023464877764878666479999998899999999998999--545599999889999179999876774


Q ss_pred             CC---CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCC
Q ss_conf             58---6681459889999996675288437999997101680
Q gi|254780791|r   75 KI---EFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGS  113 (529)
Q Consensus        75 ~~---~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~  113 (529)
                      .-   .-..+.|+-|.|.|++..|  +|.-|+.+..|.+.+.
T Consensus        89 ~~~~~~~~i~~G~~V~V~G~i~~~--~~~~~i~~~~i~~v~d  128 (159)
T 3kf6_A           89 SMSKRAISMSPGNVVCVFGKINSF--RSEVELIAQSFEELRD  128 (159)
T ss_dssp             HHHHHHTTCCTTCEEEEEEEEECS--SSSCEEEEEEEEEECS
T ss_pred             CCCCCCCCCCCCCEEEEEEEEEEC--CCEEEEEEEEEEEECC
T ss_conf             334435568999599999999662--9888999999999099


No 5  
>>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} (A:)
Probab=96.35  E-value=0.094  Score=35.23  Aligned_cols=116  Identities=15%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             CCCCCCHHHHHHHHHH----HHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCE-EEEEEECCCCCC--CCCCCCC
Q ss_conf             8986229999999999----9740-017189999970543568886279998748947-999997352105--8668145
Q gi|254780791|r   11 DHPEYSVSELSYHLKH----IVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSR-IDAIIWKGTLNK--IEFLPEE   82 (529)
Q Consensus        11 ~~~~~svs~l~~~i~~----~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~-i~~~~~~~~~~~--~~~~~~~   82 (529)
                      +.=|.||++|...-..    .+.+ .+..|+|+|=|.++..  .++.+-|+|-|..+. |.|.+|......  ..-..++
T Consensus        45 ~l~PvtIk~i~~a~~~~~~~~i~g~~v~~V~ivG~V~~i~~--~~~~~~~~idDgTG~~i~v~~~~~~~~~~~~~~~i~~  122 (270)
T 2pi2_A           45 HIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK--APTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP  122 (270)
T ss_dssp             CCEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE--CSSEEEEEEECSSSSCEEEEEECC-------CCCCCT
T ss_pred             CEEEEEHHHHHHCCCCCCCEEECCEEEEEEEEEEEEEEEEE--CCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf             46537899986270679976999999899999999968986--5866899997799984799997179986444651447


Q ss_pred             CCEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHHH-HHHHHHHHHHHHH
Q ss_conf             988999999667528843799999710168-00799-9999999976540
Q gi|254780791|r   83 GIEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTLL-TALEKRKKKLLEE  130 (529)
Q Consensus        83 G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~-~~~e~lk~~L~~e  130 (529)
                      |+-|.|.|++..|  +|.-++.+..|.|.. ..++. -.+|-+...|..+
T Consensus       123 g~yVrV~G~lk~f--~~~~~i~~~~I~~V~d~Nei~~H~levi~~~l~~~  170 (270)
T 2pi2_A          123 ETYVKVAGHLRSF--QNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLS  170 (270)
T ss_dssp             TCEEEEEEEEEEE--TTEEEEEEEEEEECSCTHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEECCC--CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             9889999997323--98578999999990685378899999999999752


No 6  
>>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} (A:38-158)
Probab=96.28  E-value=0.062  Score=36.84  Aligned_cols=96  Identities=15%  Similarity=0.065  Sum_probs=74.0

Q ss_pred             CCCHHHHHHHHHHHHHH--CC--CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC-----CCCCCCCC
Q ss_conf             62299999999999740--01--71899999705435688862799987489479999973521058-----66814598
Q gi|254780791|r   14 EYSVSELSYHLKHIVES--NL--SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI-----EFLPEEGI   84 (529)
Q Consensus        14 ~~svs~l~~~i~~~l~~--~~--~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~-----~~~~~~G~   84 (529)
                      ..|+.++....+...+.  .+  ..|+|.|=|.+.|.  .++=++++|.|..+.+.|++.......-     .-.+..|+
T Consensus         5 t~~~~~~~~~~~~~~~~~~~~~g~~V~i~GwV~~iR~--~gk~~Fi~l~d~~~~~Q~~~~~~~~~~~~~~~~~~~l~~g~   82 (121)
T 1e1o_A            5 DHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRI--MGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGD   82 (121)
T ss_dssp             SCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTC
T ss_pred             CCCHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             7699999998604573024318988999886644536--89948999981883599999788583799999998456774


Q ss_pred             EEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf             8999999667528843799999710168
Q gi|254780791|r   85 EFLVIGKITTFPGSSKYQIIIESLIPSG  112 (529)
Q Consensus        85 ~v~~~g~~~~y~~~g~~ql~v~~i~~~g  112 (529)
                      -|.|.|.+. -.+.|.|.|.++.+...+
T Consensus        83 ~v~V~G~v~-~~~~g~lEl~~~~i~ils  109 (121)
T 1e1o_A           83 IIGARGTLF-KTQTGELSIHCTELRLLT  109 (121)
T ss_dssp             EEEEEEEEE-ECTTCCEEEEEEEEEEEE
T ss_pred             EEEEEEEEE-CCCCCCEEEEEEEEEEEE
T ss_conf             899994884-389975899999999985


No 7  
>>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B (D:)
Probab=96.26  E-value=0.15  Score=33.32  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             CCCCCHHHHHHHHHH----HHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC---CCCCCCC
Q ss_conf             986229999999999----9740-0171899999705435688862799987489479999973521058---6681459
Q gi|254780791|r   12 HPEYSVSELSYHLKH----IVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI---EFLPEEG   83 (529)
Q Consensus        12 ~~~~svs~l~~~i~~----~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~---~~~~~~G   83 (529)
                      .=|.++++|...-+.    .+.+ .+..|+|.|=|.++..  .+...=|+|-|..+.|.|+.|......-   .-..++|
T Consensus         6 i~PvtI~~i~~a~~~~~~~~i~~~~i~~V~ivG~V~~v~~--~~~~~~y~idDgTG~i~~~~~~~~~~~~~~~~~~i~~g   83 (132)
T 3kdf_D            6 IVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK--APTNIVYKIDDXTAAPXDVRQWVDTDDTSSENTVVPPE   83 (132)
T ss_dssp             CEECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEE--CSSEEEEEEECSSSSCEEEEEEC---------CCCCTT
T ss_pred             EEEEEHHHHHCCCCCCCCEEECCEEEEEEEEEEEEEEEEE--CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf             2626999985080789978999999999999999989997--78779999988999958999978967571203326689


Q ss_pred             CEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHHH-HHHHHHHHHHH
Q ss_conf             88999999667528843799999710168-00799-99999999765
Q gi|254780791|r   84 IEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTLL-TALEKRKKKLL  128 (529)
Q Consensus        84 ~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~-~~~e~lk~~L~  128 (529)
                      +-|-|.|++..|  +|.-++.+..|.|.. .-++. -.+|-+..+|.
T Consensus        84 ~~V~V~G~i~~~--~~~~~i~~~~i~~v~d~ne~~~h~lev~~~~l~  128 (132)
T 3kdf_D           84 TYVKVAGHLRSF--QNKKSLVAFKIXPLEDXNEFTTHILEVINAHXV  128 (132)
T ss_dssp             CEEEEEEEEEEE--TTEEEEEEEEEEECSSTHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEEC--CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             899999999501--985899999999907957999999999999873


No 8  
>>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A (A:)
Probab=96.08  E-value=0.089  Score=35.43  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             CCCCEEEEEEECCCCCCCCCCEEEEE--EECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEEE
Q ss_conf             01718999997054356888627999--874894799999735210586681459889999-996675288437999997
Q gi|254780791|r   31 NLSHVCVRGEISGYRGIHSSGHAYFS--LKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIES  107 (529)
Q Consensus        31 ~~~~~~v~gEis~~~~~~~sGH~Yf~--lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~~  107 (529)
                      ...++-|+|-|.... ...+++.+|+  |.|+.+.|++++|.-.+   .-.++.|+-|.+. |.++.|  +|.++|.+..
T Consensus        14 ~~~~v~i~~~V~~~~-~~~~~~~~~~~~l~DetG~I~~t~W~d~~---~~~i~~G~~v~i~~~~v~~~--~g~~el~~~~   87 (109)
T 2kbn_A           14 NGQWANLKAKVIQLW-ENTHESISQVGLLGDETGIIKFTIWKNAE---LPLLEQGESYLLRSVVVGEY--NDRFQVQVNK   87 (109)
T ss_dssp             TTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTTCCEEEEEEGGGC---CCCCCTTCEEEEEEEEEEEE--TTEEEEEECS
T ss_pred             CCCCEEEEEEEEEEE-CCCCCEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCCEEEEEEEEEEEE--CCEEEEEECC
T ss_conf             998289999999974-79995299999998898759999967756---65467898999940799477--8827999899


Q ss_pred             ---EEEC
Q ss_conf             ---1016
Q gi|254780791|r  108 ---LIPS  111 (529)
Q Consensus       108 ---i~~~  111 (529)
                         |++.
T Consensus        88 ~~~i~~~   94 (109)
T 2kbn_A           88 NSSIEKL   94 (109)
T ss_dssp             SSEEEEC
T ss_pred             CCEEEEC
T ss_conf             8479988


No 9  
>>3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus} PDB: 3e9i_A* (A:1-145)
Probab=95.78  E-value=0.084  Score=35.64  Aligned_cols=95  Identities=16%  Similarity=0.137  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHH---CC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEE
Q ss_conf             2299999999999740---01-7189999970543568886279998748947999997352105----86681459889
Q gi|254780791|r   15 YSVSELSYHLKHIVES---NL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEF   86 (529)
Q Consensus        15 ~svs~l~~~i~~~l~~---~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v   86 (529)
                      ++++++........+.   .. ..|+|.|=|.++|.  .++.+++.|.|....+.|++.......    .--.+.-|+-|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~~V~v~GrV~~~R~--~gk~~Fi~lrd~~~~iQ~~~~~~~~~~~~~~~~~~l~~g~~v  112 (145)
T 3e9h_A           35 HKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRG--MGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIV  112 (145)
T ss_dssp             CCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEC--CSSEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEE
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHEEEEEEEE
T ss_conf             849999998613375533358978999998770876--898298999819868999992774779998552146654578


Q ss_pred             EEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf             99999667528843799999710168
Q gi|254780791|r   87 LVIGKITTFPGSSKYQIIIESLIPSG  112 (529)
Q Consensus        87 ~~~g~~~~y~~~g~~ql~v~~i~~~g  112 (529)
                      .|.|.+- =.+.|++.+.++.|+.-+
T Consensus       113 ~V~G~v~-~~~~g~lEi~~~~i~ils  137 (145)
T 3e9h_A          113 GVRGTMF-KTKVGELSIKVSSYEFLT  137 (145)
T ss_dssp             EEEEEEE-ECTTCCEEEEEEEEEEEE
T ss_pred             EEEEEEE-CCCCCCCCCEEEEEEEEE
T ss_conf             8850372-157765332035799974


No 10 
>>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} (A:1-104)
Probab=95.65  E-value=0.23  Score=31.73  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=58.8

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEEEEEEEEE
Q ss_conf             71899999705435688862799987489479999973521058668145988999999667528--8437999997101
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPG--SSKYQIIIESLIP  110 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~--~g~~ql~v~~i~~  110 (529)
                      ..|+|.|=|.+.|.  .++.++++|.|..+.+.|++...      ..+..|.-|.+.|.+. -.+  .|.|.|.+++++.
T Consensus        14 ~~V~i~GwV~~~R~--~gk~~Fi~LrD~sg~~q~~~~~~------~~l~~~~~V~v~G~v~-~~~~~~~~~Ei~v~~i~i   84 (104)
T 1n9w_A           14 QEVELLGFLHWRRD--LGRIQFLLLRDRSGVVQVVTGGL------KLPLPESALRVRGLVV-ENAKAPGGLEVQAKEVEV   84 (104)
T ss_dssp             SEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEESC------CCCCTTCEEEEEEEEE-ECTTSTTSEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEECCC------CCCCCCCEEEEEEEEE-CCCCCCCCEEEEEEEEEE
T ss_conf             98999999997981--89879999994990099998766------3679998899999998-369999788999839999


Q ss_pred             CC
Q ss_conf             68
Q gi|254780791|r  111 SG  112 (529)
Q Consensus       111 ~g  112 (529)
                      -|
T Consensus        85 l~   86 (104)
T 1n9w_A           85 LS   86 (104)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             97


No 11 
>>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} (A:30-156)
Probab=95.50  E-value=0.17  Score=32.91  Aligned_cols=98  Identities=13%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             CCCCHHHHHHHHHHHHHHC-C--CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC----C--CCCCCC
Q ss_conf             8622999999999997400-1--71899999705435688862799987489479999973521058----6--681459
Q gi|254780791|r   13 PEYSVSELSYHLKHIVESN-L--SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI----E--FLPEEG   83 (529)
Q Consensus        13 ~~~svs~l~~~i~~~l~~~-~--~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~----~--~~~~~G   83 (529)
                      +.+|++++........... +  ..|+|.|=|.+.|. ..++=++.+|.|..+.+.|++-......-    .  -.+.-|
T Consensus         4 ~t~~~~~~~~~~~~~~~~~~~~g~~v~v~G~V~~~R~-~g~~~~Fi~lrD~~~~~Q~~~~~~~~~~~~~~~~~~~~l~~g   82 (127)
T 3bju_A            4 VDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRA-SGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRG   82 (127)
T ss_dssp             CCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEE-SSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTT
T ss_pred             CCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEC-CCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCEEEEE
T ss_conf             8772999999741578764258988999999884886-899389999967977999999688678899999974816787


Q ss_pred             CEEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf             88999999667528843799999710168
Q gi|254780791|r   84 IEFLVIGKITTFPGSSKYQIIIESLIPSG  112 (529)
Q Consensus        84 ~~v~~~g~~~~y~~~g~~ql~v~~i~~~g  112 (529)
                      +-|.|.|.+. =.+.|.|.|.++.|+.-+
T Consensus        83 ~~V~v~G~v~-~t~~ge~El~~~~i~il~  110 (127)
T 3bju_A           83 DIIGVQGNPG-KTKKGELSIIPYEITLLS  110 (127)
T ss_dssp             CEEEEEEEEE-ECTTCCEEEEEEEEEEEE
T ss_pred             EEEEEEEEEC-CCCCCCCCCCCCCCHHHC
T ss_conf             5899944552-334664322220000001


No 12 
>>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395)
Probab=95.19  E-value=0.24  Score=31.57  Aligned_cols=135  Identities=12%  Similarity=0.004  Sum_probs=79.1

Q ss_pred             HCCCCCCCCC--CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             1226100163--10265289998478425899999986305975899972100111103679999999974100357677
Q gi|254780791|r  131 GLFSDQHKNP--IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPR  208 (529)
Q Consensus       131 Glfd~~~k~~--lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~  208 (529)
                      -+||......  .|.-..+|||||...|.+.-=.=......+..   --|+=+.|...+.....+|+.+....      .
T Consensus         4 el~d~a~~l~~~~~~~g~rv~iis~sGG~~~~~~D~~~~~G~~~---~NPiDl~g~~~~~~~~~~l~~l~~d~------~   74 (152)
T 2fp4_B            4 PIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKP---ANFLDLGGGVKESQVYQAFKLLTADP------K   74 (152)
T ss_dssp             HHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCB---CEEEECCSSCCHHHHHHHHHHHHHCT------T
T ss_pred             HHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC---EEEEEECCCCCHHHHHHHHHHHHCCC------C
T ss_conf             57889887599710356627798447225566899999726871---16887337776788999999997199------9


Q ss_pred             CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC-----CCCCCHHHHHHH
Q ss_conf             758999516888444220076999999974890488520577752589886412-----377721456763
Q gi|254780791|r  209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL-----RAPTPTGAAEMA  274 (529)
Q Consensus       209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~-----Ra~TPTaAAEla  274 (529)
                      +|.|++.=.+|....-+.+.....+..=...+.|++.-+|...-..-.....+.     -+.||..|+..+
T Consensus        75 vd~iiv~~~~~~~~~~~~~~~~i~~~~~~~~kp~v~~~~~g~~~~~~~~~l~~~gipv~~f~~~e~av~al  145 (152)
T 2fp4_B           75 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKA  145 (152)
T ss_dssp             CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHH
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHH
T ss_conf             87899998087413699999999999952999758999998988999999997799748737999999999


No 13 
>>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} (A:1-161)
Probab=95.15  E-value=0.25  Score=31.43  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=59.7

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC-----CCCCCCCCEEEEEEEEEEECC-------CCE
Q ss_conf             71899999705435688862799987489479999973521058-----668145988999999667528-------843
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI-----EFLPEEGIEFLVIGKITTFPG-------SSK  100 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~-----~~~~~~G~~v~~~g~~~~y~~-------~g~  100 (529)
                      ..|+|.|=|.+.|.  .++.++++|.|....|.|++.......-     --.+.-|+-|.|.|.+- -.|       .|.
T Consensus        63 ~~V~v~GrV~~~R~--~gk~~Fi~lrD~~~~iQ~~~~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~-~~~~~~~~~~~g~  139 (161)
T 3i7f_A           63 KTVTIRARVQAVRG--KGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVK-AVEKPIEKATQQD  139 (161)
T ss_dssp             CEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEE-ECSSCCTTSSSCS
T ss_pred             CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEEE-CCCCCCCCCCCCC
T ss_conf             98999899885875--89869999981880489999789888699999996399853899999997-4688766689985


Q ss_pred             EEEEEEEEEECC
Q ss_conf             799999710168
Q gi|254780791|r  101 YQIIIESLIPSG  112 (529)
Q Consensus       101 ~ql~v~~i~~~g  112 (529)
                      |.|.|+.+..-+
T Consensus       140 ~El~v~~i~ils  151 (161)
T 3i7f_A          140 VEIHVTSIAVVS  151 (161)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
T ss_conf             799964899986


No 14 
>>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} (A:27-201)
Probab=95.13  E-value=0.15  Score=33.51  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             CCCCCCCEEEEEECCCHHH--HH-HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             3102652899984784258--99-99998630597589997210011110367999999997410035767775899951
Q gi|254780791|r  140 PIPFIPKIIAVITSPTGAV--IR-DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR  216 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~a~--~~-D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R  216 (529)
                      -+..+-+|+.|||+++...  +. .+...+.+.   .+ .+-..++++-....+.++++.+....       +| .||+-
T Consensus        20 ~l~~~g~~~livt~~~~~~~~~~~~v~~~l~~~---~~-~v~~~~~~~~~~~~v~~~~~~~~~~~-------~d-~iiai   87 (175)
T 1oj7_A           20 QIPHDARVLITYGGGSVKKTGVLDQVLDALKGM---DV-LEFGGIEPNPAYETLMNAVKLVREQK-------VT-FLLAV   87 (175)
T ss_dssp             HSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTS---EE-EEECCCCSSCBHHHHHHHHHHHHHHT-------CC-EEEEE
T ss_pred             HHHCCCCEEEEECCCHHHHCCHHHHHHHHHCCC---CE-EEEECCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEC
T ss_conf             986799689998951687754999999981899---47-99918137989999999999997549-------97-89971


Q ss_pred             CCCCHHHH
Q ss_conf             68884442
Q gi|254780791|r  217 GGGSIEDL  224 (529)
Q Consensus       217 GGGS~eDL  224 (529)
                      ||||.-|+
T Consensus        88 GGGsv~D~   95 (175)
T 1oj7_A           88 GGGSVLDG   95 (175)
T ss_dssp             ESHHHHHH
T ss_pred             CCCCCCCH
T ss_conf             78777307


No 15 
>>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (B:238-388)
Probab=95.12  E-value=0.36  Score=30.06  Aligned_cols=133  Identities=14%  Similarity=0.093  Sum_probs=77.1

Q ss_pred             HHCCCCCCCCCC--CCCCCEEEEEECCCHHHHH--HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             012261001631--0265289998478425899--999986305975899972100111103679999999974100357
Q gi|254780791|r  130 EGLFSDQHKNPI--PFIPKIIAVITSPTGAVIR--DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRT  205 (529)
Q Consensus       130 eGlfd~~~k~~l--P~~p~~i~vits~~~a~~~--D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~  205 (529)
                      |-+||.......  +.-..+|||||...|.+.-  |.+.-.  -+..   --|+-+.|...+.....+|+.+....    
T Consensus         2 eel~d~a~~l~~~~~~~g~rv~iis~sGG~~~~~~D~~~~~--G~~~---~NPvDl~g~~~~~~~~~~l~~~~~d~----   72 (151)
T 2nu8_B            2 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLH--GGEP---ANFLDVGGGATKERVTEAFKIILSDD----   72 (151)
T ss_dssp             CHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCB---CEEEECCSCCCHHHHHHHHHHHHTST----
T ss_pred             CHHHHHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHC--CCCC---CEEEEECCCCCHHHHHHHHHHHHCCC----
T ss_conf             81267786588751646985678715126667799999983--9983---13676258887999999999997599----


Q ss_pred             CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHCC-----CCCCCHHHHHHH
Q ss_conf             67775899951688844422007699999997489048852057-7752589886412-----377721456763
Q gi|254780791|r  206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGH-ETDWTLADYAADL-----RAPTPTGAAEMA  274 (529)
Q Consensus       206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGH-E~D~Tl~D~VAD~-----Ra~TPTaAAEla  274 (529)
                        .+|+|++.=++|....-+...+...+..=...+.||++-+|. +.+.. .....+.     .++||..|+..+
T Consensus        73 --~vd~i~v~~~~~~~~~~~~~~~i~~~~~~~~~k~~v~~~~~g~~~~~~-~~~l~~~gipv~~f~s~~~Av~al  144 (151)
T 2nu8_B           73 --KVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELG-AKKLADSGLNIIAAKGLTDAAQQV  144 (151)
T ss_dssp             --TCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHH-HHHHHTTCSSEEECSSHHHHHHHH
T ss_pred             --CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHHHHCCCCEEECCCHHHHHHHH
T ss_conf             --876899998566010899999999999971999868999998987999-999996899848718999999999


No 16 
>>1b8a_A Protein (aspartyl-tRNA synthetase); tRNA ligase,; HET: ATP; 1.90A {Pyrococcus kodakaraensis} (A:1-108)
Probab=95.10  E-value=0.28  Score=30.97  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEEEEEEEEEEECCCC--EEEEEEE
Q ss_conf             7189999970543568886279998748947999997352105----866814598899999966752884--3799999
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEFLVIGKITTFPGSS--KYQIIIE  106 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v~~~g~~~~y~~~g--~~ql~v~  106 (529)
                      ..|+|.|=|.+.|.  .++..+++|.|..+.+.|++.+.....    .--.+..|+-|.+.|.+. ..|++  ++.|.++
T Consensus        17 ~~V~v~GwV~~iR~--~g~~~Fi~LrD~~~~~Q~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~-~~~~~~~~~El~~~   93 (108)
T 1b8a_A           17 QKVKVAGWVWEVKD--LGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVN-FTPKAKLGFEILPE   93 (108)
T ss_dssp             CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEE-ECTTSTTSEEEEEE
T ss_pred             CEEEEEEEEEEEEC--CCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEE-ECCCCCCCCEEEEE
T ss_conf             98999999870883--8980999999398639999958979999999986799845999996999-37888756421011


Q ss_pred             EEEECC
Q ss_conf             710168
Q gi|254780791|r  107 SLIPSG  112 (529)
Q Consensus       107 ~i~~~g  112 (529)
                      +++.-+
T Consensus        94 ~i~ils   99 (108)
T 1b8a_A           94 KIVVLN   99 (108)
T ss_dssp             EEEEEE
T ss_pred             EEECCC
T ss_conf             111035


No 17 
>>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} (A:)
Probab=95.05  E-value=0.38  Score=29.76  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=57.2

Q ss_pred             CCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             71899999705---43568886--2799987------489------4799999735210586681459889999996675
Q gi|254780791|r   33 SHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF   95 (529)
Q Consensus        33 ~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y   95 (529)
                      ..|-+.|.|+.   ++. -.+|  .+-|+|.      |.+      -.|+|++|...+..+.-.++.|+.|.|.|++..+
T Consensus        20 N~v~L~G~l~~dpelR~-Tp~G~~v~~f~La~~s~~~e~g~~r~~~~~i~vv~~G~~Ae~~~~~l~KG~~V~V~G~L~~~   98 (134)
T 1v1q_A           20 NRLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH   98 (134)
T ss_dssp             EEEEEEEEEEEEEEEEE-CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEEEEEEEEEEE
T ss_conf             08999999777864569-99997699999841120035655213579999999959999998752889999999998860


Q ss_pred             CC---CCEEEEEEEEEEECC
Q ss_conf             28---843799999710168
Q gi|254780791|r   96 PG---SSKYQIIIESLIPSG  112 (529)
Q Consensus        96 ~~---~g~~ql~v~~i~~~g  112 (529)
                      .-   .+++-|.|+.|+.-+
T Consensus        99 ~~kn~~~k~vl~a~~iefLd  118 (134)
T 1v1q_A           99 KAKNGLSKMVLHAEQIELID  118 (134)
T ss_dssp             CTTTTSCEEEEEEEEEEETT
T ss_pred             ECCCCCCEEEEEEEEEEECC
T ss_conf             05289967999998999901


No 18 
>>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} (A:)
Probab=95.03  E-value=0.16  Score=33.12  Aligned_cols=79  Identities=20%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CEEEEEEECC---CCCCCCCCEEE--EEE------ECCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE--E
Q ss_conf             1899999705---43568886279--998------7489------47999997352105866814598899999966--7
Q gi|254780791|r   34 HVCVRGEISG---YRGIHSSGHAY--FSL------KDNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT--T   94 (529)
Q Consensus        34 ~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~--~   94 (529)
                      .|-+.|-|.+   ++. -.+|..|  |+|      +|.+      .-+.|++|...+..+.-.++.|+.|.|.|++.  .
T Consensus         4 ~v~l~G~l~~dp~~r~-t~~g~~~~~f~la~~~~~~~~~~~~~~~~~~~v~~~~~~A~~~~~~l~kG~~V~V~G~l~~~~   82 (104)
T 1txy_A            4 RLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQXPVIVSGHENQAITHSITVGSRITVQGFISCHK   82 (104)
T ss_dssp             EEEEEEEEEEEEEEEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--
T ss_pred             EEEEEEEECCCCCEEE-CCCCCEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEEEEC
T ss_conf             9999999677874789-589966999999872079716660889999999999099899887547999999999988722


Q ss_pred             EC-CCCEEEEEEEEEEECCC
Q ss_conf             52-88437999997101680
Q gi|254780791|r   95 FP-GSSKYQIIIESLIPSGS  113 (529)
Q Consensus        95 y~-~~g~~ql~v~~i~~~g~  113 (529)
                      |+ +.|...+.++.|+.-+-
T Consensus        83 ~~dkdg~~~~~~~~i~~l~~  102 (104)
T 1txy_A           83 AKNGLSKXVLHAEQIELIDS  102 (104)
T ss_dssp             ------CCEEEEEEEEEC--
T ss_pred             CCCCCCEEEEEEEEEEEECC
T ss_conf             62899629999999999517


No 19 
>>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} (A:)
Probab=94.89  E-value=0.18  Score=32.74  Aligned_cols=79  Identities=16%  Similarity=0.359  Sum_probs=58.3

Q ss_pred             CCCEEEEEEEC---CCCCCCCCCEEEE--EEE------CC---------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             17189999970---5435688862799--987------48---------9479999973521058668145988999999
Q gi|254780791|r   32 LSHVCVRGEIS---GYRGIHSSGHAYF--SLK------DN---------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK   91 (529)
Q Consensus        32 ~~~~~v~gEis---~~~~~~~sGH~Yf--~lk------d~---------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~   91 (529)
                      +..|-|.|-|.   .++ ...+|+.|.  +|.      |.         .--+.|++|...+..+.-.++.|+.|+|.|+
T Consensus         4 mn~v~l~G~l~~dPe~~-~~~~g~~~~~~~ia~~~~~~~~~~~~~~~~~t~~~~v~~~~~~Ae~~~~~l~KG~~V~V~G~   82 (199)
T 3eiv_A            4 ETVITVVGNLVDDPELR-FTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGR   82 (199)
T ss_dssp             CCEEEEEEEESSCCEEE-ECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred             CCEEEEEEEECCCCEEE-ECCCCCEEEEEEEEECCCCEECCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             78799998807799898-88999989999999748702056783325543465666230679999974689999999989


Q ss_pred             EEE--EC-----CCCEEEEEEEEEEEC
Q ss_conf             667--52-----884379999971016
Q gi|254780791|r   92 ITT--FP-----GSSKYQIIIESLIPS  111 (529)
Q Consensus        92 ~~~--y~-----~~g~~ql~v~~i~~~  111 (529)
                      +..  |.     .++.+.|.+++|...
T Consensus        83 l~~~~~~d~dG~~~~~~~i~a~~i~~~  109 (199)
T 3eiv_A           83 LKQRSYEDREGVKRTVYELDVDEVGAS  109 (199)
T ss_dssp             EEEEC--------CCEEEEEEEEEEEE
T ss_pred             EEECEEECCCCCEEEEEEEEEEECCCC
T ss_conf             882506999998976999995252631


No 20 
>>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A (A:)
Probab=94.85  E-value=0.32  Score=30.48  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             CCCCEEEEEEECC---CCCCCCCCE--EEEEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             0171899999705---435688862--79998------7489-------4799999735210586681459889999996
Q gi|254780791|r   31 NLSHVCVRGEISG---YRGIHSSGH--AYFSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKI   92 (529)
Q Consensus        31 ~~~~~~v~gEis~---~~~~~~sGH--~Yf~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~   92 (529)
                      ++..|-+.|=|.+   ++. -.+|.  +.|+|      +|..       .-++|++|...+..+.-.++.|+.|.|.|++
T Consensus         4 ~mn~v~l~G~l~~~~~~~~-~~~g~~~~~~~la~~~~~~~~~~~~~~~~~~~~v~~~~~~A~~~~~~l~kG~~v~v~G~l   82 (264)
T 2fxq_A            4 GLNQVFLIGTLTARPDMRY-TPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL   82 (264)
T ss_dssp             CEEEEEEEEEESSCCCCEE-CTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred             CCEEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCEEECCEEEEEEECHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf             6508999999367987999-799988999999978977989999985358999998478878888715589789999898


Q ss_pred             EE--EC----CCCEEEEEEEEEEEC
Q ss_conf             67--52----884379999971016
Q gi|254780791|r   93 TT--FP----GSSKYQIIIESLIPS  111 (529)
Q Consensus        93 ~~--y~----~~g~~ql~v~~i~~~  111 (529)
                      ..  |.    .+..+.++|+.|...
T Consensus        83 ~~~~~~~~g~~~~~~~i~~~~i~~~  107 (264)
T 2fxq_A           83 EYRQWEKDGEKKSEVQVRAEFIDPL  107 (264)
T ss_dssp             EEC---------CCEEEEEEEEEEC
T ss_pred             ECCCEEECCEEEEEEEEEEEEEEEC
T ss_conf             8158771990999999999997942


No 21 
>>1ujn_A Dehydroquinate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} (A:1-160)
Probab=94.74  E-value=0.15  Score=33.42  Aligned_cols=96  Identities=14%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             261001631026528999847842-5899999986305975899972100111103679999999974100357677758
Q gi|254780791|r  133 FSDQHKNPIPFIPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDI  211 (529)
Q Consensus       133 fd~~~k~~lP~~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~  211 (529)
                      |..+--..+|.+.+|+-|||.... ..+.|-+...-++..+.+..| ..+.++.....+.++++.+...       ++| 
T Consensus        16 ~g~g~~~~l~~~~kk~liv~d~~~~~~~~~~i~~~l~~~~i~~~~~-~~~~~~~~~~~v~~~~~~~~~~-------~~d-   86 (160)
T 1ujn_A           16 VGEGVLKEVPPLAGPAALLFDRRVEGFAQEVAKALGVRHLLGLPGG-EAAKSLEVYGKVLSWLAEKGLP-------RNA-   86 (160)
T ss_dssp             EESCGGGGSCCCSSCEEEEEEGGGHHHHHHHHHHHTCCCEEEECCS-GGGSSHHHHHHHHHHHHHHTCC-------TTC-
T ss_pred             ECCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHHHHHHHHHHHHHCC-------CCC-
T ss_conf             8877898778875989999895489999999973588559997898-5648999999999999973103-------566-


Q ss_pred             EEEECCCCCHHHHHHCCHHHHHHHHH---HCCCEEEE
Q ss_conf             99951688844422007699999997---48904885
Q gi|254780791|r  212 IILARGGGSIEDLWHFNDEMIVRAIA---NSSIPIIS  245 (529)
Q Consensus       212 iii~RGGGS~eDL~~FN~e~laraI~---~~~iPVis  245 (529)
                      .||+=||||.-|+        |++++   ...+|.|+
T Consensus        87 ~ivavGGGs~~D~--------aK~~a~~~~~~~p~i~  115 (160)
T 1ujn_A           87 TLLVVGGGTLTDL--------GGFVAATYLRGVAYLA  115 (160)
T ss_dssp             EEEEEESHHHHHH--------HHHHHHHBTTCCEEEE
T ss_pred             CEEEECCHHHHHH--------HHHHHHHHCCCCCEEC
T ss_conf             4368524666678--------8887653137850331


No 22 
>>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} (A:1-104)
Probab=94.54  E-value=0.34  Score=30.18  Aligned_cols=78  Identities=14%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCEEEEEEEEEEEC-CCCEEEEEEEEEEE
Q ss_conf             7189999970543568886279998748947999997352105-866814598899999966752-88437999997101
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK-IEFLPEEGIEFLVIGKITTFP-GSSKYQIIIESLIP  110 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~-~~~~~~~G~~v~~~g~~~~y~-~~g~~ql~v~~i~~  110 (529)
                      ..|+|.|=|.+.|.  .++..+++|.|..+.+.|++-...... .--.+..|+-|.+.|.+..-+ +.|+|.+.++.++.
T Consensus        17 ~~V~v~Gwv~~~R~--~g~~~Fi~l~D~sg~~Q~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~~~~~~El~v~~i~i   94 (104)
T 1wyd_A           17 KEVIWAGWVHLLRD--LGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITL   94 (104)
T ss_dssp             CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEEECCCCCHHHHHCCCCCEEEEEEEEEECCCCCCCCEEECCCCCCC
T ss_conf             98999998687875--8980999999498068999948953288995389962999997997788887653421232221


Q ss_pred             CC
Q ss_conf             68
Q gi|254780791|r  111 SG  112 (529)
Q Consensus       111 ~g  112 (529)
                      .|
T Consensus        95 l~   96 (104)
T 1wyd_A           95 LS   96 (104)
T ss_dssp             EE
T ss_pred             CH
T ss_conf             10


No 23 
>>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} (A:1-111)
Probab=94.49  E-value=0.33  Score=30.30  Aligned_cols=78  Identities=10%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC--CCCCCCCCEEEEEEEEEEEC--------CCCEEE
Q ss_conf             71899999705435688862799987489479999973521058--66814598899999966752--------884379
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI--EFLPEEGIEFLVIGKITTFP--------GSSKYQ  102 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~--~~~~~~G~~v~~~g~~~~y~--------~~g~~q  102 (529)
                      ..|+|.|=|.+.|.  .++..++.|.|..+.+.|++-+......  --.+..|+-|.+.|.+..-+        +-|.+.
T Consensus        16 ~~V~i~Gwv~~~R~--~gk~~Fi~LrD~~g~~Q~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~~~~~g~~E   93 (111)
T 1c0a_A           16 QQVTLCGWVNRRRD--LGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIE   93 (111)
T ss_dssp             CEEEEEEEEEEEEE--CSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEE
T ss_pred             CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf             98999998640874--7994999999498679999968743289998539997689999899926877767777887489


Q ss_pred             EEEEEEEECC
Q ss_conf             9999710168
Q gi|254780791|r  103 IIIESLIPSG  112 (529)
Q Consensus       103 l~v~~i~~~g  112 (529)
                      +.|++++.-|
T Consensus        94 i~v~~i~il~  103 (111)
T 1c0a_A           94 VLASSLTIIN  103 (111)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
T ss_conf             9986999950


No 24 
>>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} (A:1-136)
Probab=94.49  E-value=0.19  Score=32.42  Aligned_cols=77  Identities=16%  Similarity=0.166  Sum_probs=57.8

Q ss_pred             CCEEEEEEECCCCCCCCCCEE-EEEEECCCCEEEEEEECCCCCCCC-------CCCCCCCEEEEEEEEEEECC-------
Q ss_conf             718999997054356888627-999874894799999735210586-------68145988999999667528-------
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIE-------FLPEEGIEFLVIGKITTFPG-------   97 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~-------~~~~~G~~v~~~g~~~~y~~-------   97 (529)
                      ..|||.|=|.+.|.  .++.+ ++.|.|..+.+.|++-+.....-.       -.+..|+-|.|.|.+. ..|       
T Consensus        37 ~~V~v~Gri~~~R~--~gk~~~Fi~l~d~~~~iQ~~~~~~~~~~~~~~~~~~~~~l~~es~V~v~G~v~-~~~~~~~~~~  113 (136)
T 1eov_A           37 KEVLFRARVHNTRQ--QGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVK-KVDEPIKSAT  113 (136)
T ss_dssp             CEEEEEEEEEEEEE--CSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEE-ECSSCCTTSS
T ss_pred             CEEEEEEEEECHHH--CCCCCEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEEEE-ECCCCCCCCC
T ss_conf             88999898850320--79975899997398789999968855632599999983799974899999999-2688877888


Q ss_pred             CCEEEEEEEEEEECC
Q ss_conf             843799999710168
Q gi|254780791|r   98 SSKYQIIIESLIPSG  112 (529)
Q Consensus        98 ~g~~ql~v~~i~~~g  112 (529)
                      .|.|.|.|+.+..-+
T Consensus       114 ~g~lEl~v~~i~ils  128 (136)
T 1eov_A          114 VQNLEIHITKIYTIS  128 (136)
T ss_dssp             EEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEEE
T ss_conf             624899999999962


No 25 
>>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} (A:1-188)
Probab=94.32  E-value=0.29  Score=30.92  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             CCCEEEEEECCCHHHHHHH---HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             6528999847842589999---9986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDI---LQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~---~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -.+++.|+|.++-......   +..+.+ .++.+.+|. -++++-...++.++++.+...+       +| .||+=||||
T Consensus        40 g~~~vlivt~~~~~~~~~~~~~~~~l~~-~~i~~~~~~-~~~~~~t~~~v~~~~~~~~~~~-------~d-~IiaiGGGs  109 (188)
T 1o2d_A           40 GKRALVVTGKSSSKKNGSLDDLKKLLDE-TEISYEIFD-EVEENPSFDNVXKAVERYRNDS-------FD-FVVGLGGGS  109 (188)
T ss_dssp             CSEEEEEEESSGGGTSSHHHHHHHHHHH-TTCEEEEEE-EECSSCBHHHHHHHHHHHTTSC-------CS-EEEEEESHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHH-CCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEECCCC
T ss_conf             9958999768688874599999999987-698599968-8678979999999999998539-------98-899928986


Q ss_pred             HHHHHHCCHHHHHHHHH
Q ss_conf             44422007699999997
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIA  237 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~  237 (529)
                      .-|+        |++++
T Consensus       110 ~iD~--------aK~~a  118 (188)
T 1o2d_A          110 PXDF--------AKAVA  118 (188)
T ss_dssp             HHHH--------HHHHH
T ss_pred             CCHH--------HHHHH
T ss_conf             1238--------99999


No 26 
>>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A (A:1-108)
Probab=94.15  E-value=0.27  Score=31.18  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=62.8

Q ss_pred             HHCC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEEEEEEEEEEEC-CCCEEE
Q ss_conf             4001-7189999970543568886279998748947999997352105----866814598899999966752-884379
Q gi|254780791|r   29 ESNL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEFLVIGKITTFP-GSSKYQ  102 (529)
Q Consensus        29 ~~~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v~~~g~~~~y~-~~g~~q  102 (529)
                      +... ..|.|.|-|.+.|.  .++..+++|.|..+.+.|++.......    .--.+.-|+-|.|.|.+.--+ +.|++.
T Consensus        12 ~~~~gk~V~i~Gwv~~~R~--~g~~~Fi~lrD~s~~~Q~v~~~~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~E   89 (108)
T 1x54_A           12 PELDGKKVRLAGWVYTNMR--VGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAE   89 (108)
T ss_dssp             GGGTTCEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEE
T ss_pred             HHHCCCEEEEEEEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCC
T ss_conf             5879999999998661775--79929999980981489999589799999999964999569999999988988878754


Q ss_pred             EEEEEEEECC
Q ss_conf             9999710168
Q gi|254780791|r  103 IIIESLIPSG  112 (529)
Q Consensus       103 l~v~~i~~~g  112 (529)
                      +.|++++.-+
T Consensus        90 i~v~~i~il~   99 (108)
T 1x54_A           90 VHVEKLEVIQ   99 (108)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCEEEECC
T ss_conf             4420046424


No 27 
>>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} (A:)
Probab=94.05  E-value=0.47  Score=29.01  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CEEEEEEECCCCC----CCCCC---E-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEE
Q ss_conf             1899999705435----68886---2-79998748947999997352105866814598899999-96675288437999
Q gi|254780791|r   34 HVCVRGEISGYRG----IHSSG---H-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQII  104 (529)
Q Consensus        34 ~~~v~gEis~~~~----~~~sG---H-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~  104 (529)
                      .+-|.|.|-.+..    ..+.|   + +-+.|-|+.+.|.+++|...+.   ..++.|+-|.+.| +++.|  +|.+||.
T Consensus        16 ~v~v~g~V~~~~~~~~~~~~~g~~~~~~~~~i~D~Tg~i~~t~w~~~~~---~~l~~g~~v~i~g~~v~~~--~g~~~l~   90 (105)
T 3dm3_A           16 TATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD---IDVGRGDYVRVRGYIREGY--YGGLECT   90 (105)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG---SCCCTTCEEEEEEEEEECT--TSSEEEE
T ss_pred             EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCC---CCCCCCCEEEEEEEEECCC--CCCEEEE
T ss_conf             5899999998258747992699888999999984998199999635222---5589999999970897368--8968999


Q ss_pred             EEEEEEC
Q ss_conf             9971016
Q gi|254780791|r  105 IESLIPS  111 (529)
Q Consensus       105 v~~i~~~  111 (529)
                      +.....-
T Consensus        91 ~~~~~~i   97 (105)
T 3dm3_A           91 ANYVEIL   97 (105)
T ss_dssp             EEEEEEE
T ss_pred             ECCCEEE
T ss_conf             5995397


No 28 
>>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} (A:)
Probab=93.98  E-value=0.32  Score=30.48  Aligned_cols=79  Identities=23%  Similarity=0.279  Sum_probs=57.7

Q ss_pred             CCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             71899999705---43568886279--998------7489-------479999973521058668145988999999667
Q gi|254780791|r   33 SHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT   94 (529)
Q Consensus        33 ~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~   94 (529)
                      ..|-|.|-|..   ++. -.+|..|  |+|      +|..       .-++|++|...+..+...++.|+.|+|.|++..
T Consensus         3 N~v~l~G~l~~dp~~~~-~~~g~~~~~~~la~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~l~~   81 (134)
T 2vw9_A            3 NKVIMVGRLTRNVELKY-LPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY   81 (134)
T ss_dssp             CCEEEEEEESSCCEEEE-CTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred             EEEEEEEECCCCCEEEE-CCCCCEEEEEEEHHCCCCCCCCCCEEEEEEEEEEEEEEEHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf             27999999376978999-89998899999022665323578412431688747730023344464226629999986404


Q ss_pred             --EC-CCC----EEEEEEEEEEECC
Q ss_conf             --52-884----3799999710168
Q gi|254780791|r   95 --FP-GSS----KYQIIIESLIPSG  112 (529)
Q Consensus        95 --y~-~~g----~~ql~v~~i~~~g  112 (529)
                        |. +.|    .+.+.+++|...+
T Consensus        82 ~~~~~k~G~~~~~~~i~a~~i~~l~  106 (134)
T 2vw9_A           82 ESWMDQTGKKNSRHTITADSLQFMD  106 (134)
T ss_dssp             EEEECTTSCEEEEEEEEEEEEEECC
T ss_pred             EEEECCCCCEEEEEEEEEEEEEECC
T ss_conf             5787689968999999997999745


No 29 
>>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A (A:)
Probab=93.94  E-value=0.64  Score=27.81  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             CEEEEEEECCCC---C-CCCCCE--E--EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
Q ss_conf             189999970543---5-688862--7--9998748947999997352105866814598899999966752884379999
Q gi|254780791|r   34 HVCVRGEISGYR---G-IHSSGH--A--YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIII  105 (529)
Q Consensus        34 ~~~v~gEis~~~---~-~~~sGH--~--Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v  105 (529)
                      .+.|.|-|....   . ..+.|+  .  -+.|.|+.+.|++++|...+   .+.++.|+-|.+.|.+..|  +|++||.+
T Consensus        13 ~vdi~~~V~~~~~~~~~~~k~g~~~~~~~~~i~D~Tg~i~~t~W~~~~---~~~~~~g~iv~i~g~v~~~--~g~~~l~~   87 (97)
T 3e0e_A           13 SGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELA---DFEVKKGDIAEVSGYVKQG--YSGLEISV   87 (97)
T ss_dssp             EEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGG---GCCCCTTCEEEEEEEEEEC----CEEEEE
T ss_pred             EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEECCHH---HCCCCCCCEEEEEEEEEEC--CCEEEEEE
T ss_conf             457999999646744788579975389999994599879999999167---4064789999999999952--99599995


Q ss_pred             EEEEE
Q ss_conf             97101
Q gi|254780791|r  106 ESLIP  110 (529)
Q Consensus       106 ~~i~~  110 (529)
                      .....
T Consensus        88 ~~~t~   92 (97)
T 3e0e_A           88 DNIGI   92 (97)
T ss_dssp             EEEEE
T ss_pred             CCCEE
T ss_conf             99439


No 30 
>>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} (A:1-145)
Probab=93.89  E-value=0.65  Score=27.74  Aligned_cols=54  Identities=13%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             CEEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEE
Q ss_conf             62799987489-4799999735210586681459889999-99667528843799999
Q gi|254780791|r   51 GHAYFSLKDNH-SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIE  106 (529)
Q Consensus        51 GH~Yf~lkd~~-a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~  106 (529)
                      ..+-|+|.|+. ..|++++|...+..++-..+.|+-|.+. ++++.|  +|.+++.+.
T Consensus        38 ~~~~l~i~D~t~~~i~v~lw~~~~~~l~~~~~~Gdvi~l~~~~v~~~--~g~~~~~~~   93 (145)
T 1xjv_A           38 YCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVY--KKETQGITS   93 (145)
T ss_dssp             EEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEE--TTEEEEEEE
T ss_pred             EEEEEEEECCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE--CCCEEEEEC
T ss_conf             99999998189998189997888666998677798999977899997--893467725


No 31 
>>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A (A:)
Probab=93.79  E-value=0.45  Score=29.15  Aligned_cols=76  Identities=14%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             CEEEEEEECC---CCCCCCCCEEE--EEE------ECC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf             1899999705---43568886279--998------748------947999997352105866814598899999966752
Q gi|254780791|r   34 HVCVRGEISG---YRGIHSSGHAY--FSL------KDN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFP   96 (529)
Q Consensus        34 ~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~   96 (529)
                      .|-+.|-|..   ++. -.+|..|  |+|      +|.      ..-++|++|...+..+.. ++-|+.|+|.|++....
T Consensus         3 ~v~l~G~i~~dp~~~~-t~~G~~~~~f~la~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~-l~kG~~V~V~G~l~~~~   80 (115)
T 3fhw_A            3 TLELSARVLECGAXRH-TPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLAD-TPLGTEXQVQGFLAPAR   80 (115)
T ss_dssp             EEEEEEEEEEECCCEE-CTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEESS
T ss_pred             EEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCEEECCCCCCCEEEEEEEEEEHHHHHHHHH-CCCCCEEEEEEEECCCC
T ss_conf             8999999876863889-899977899999932012048873534499999999488232041-37999999999965266


Q ss_pred             C-CCEEEEEEEEEEEC
Q ss_conf             8-84379999971016
Q gi|254780791|r   97 G-SSKYQIIIESLIPS  111 (529)
Q Consensus        97 ~-~g~~ql~v~~i~~~  111 (529)
                      - ....++.++.|+.-
T Consensus        81 ~~~~~g~i~~~~i~~l   96 (115)
T 3fhw_A           81 KDSVKVKLHLQQARRI   96 (115)
T ss_dssp             TTCSSEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEEEE
T ss_conf             8898369998999992


No 32 
>>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), homoserine O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} (A:)
Probab=93.78  E-value=0.5  Score=28.76  Aligned_cols=117  Identities=13%  Similarity=0.038  Sum_probs=72.9

Q ss_pred             HHHHHHHHCCCCCCCC--CCCCCCCEEEEEEC--CCHHHHHHHHHHHHHCCC-EEEEEEE--CCCCCCCHHHHHHHHHHH
Q ss_conf             9976540122610016--31026528999847--842589999998630597-5899972--100111103679999999
Q gi|254780791|r  124 KKKLLEEGLFSDQHKN--PIPFIPKIIAVITS--PTGAVIRDILQRISCRFP-LRVIIFP--VKVQGDECPKEIANAILQ  196 (529)
Q Consensus       124 k~~L~~eGlfd~~~k~--~lP~~p~~i~vits--~~~a~~~D~~~~~~~r~p-~~~~~~p--~~vQG~~a~~~i~~ai~~  196 (529)
                      ++.|..|+.+-.....  .-+.-+.+|+||-.  ...+-..++++.+..+.. +.+..+.  ..+........+.    .
T Consensus        24 ~~~l~~e~~~~~~~~~~~~~~~~~~~i~ild~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   99 (312)
T 2h2w_A           24 VKVLAKEGIFVMTEKRAIHQDIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHIL----K   99 (312)
T ss_dssp             HHHHHTTTCCCBCCC------CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHH----H
T ss_pred             HHHHHHCCCEEECHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHH----H
T ss_conf             788986897775753512366643257887068851788999999866886554799998135235763388999----9


Q ss_pred             HHHHCCCCCCCCCCEEEEECCCCCHHH----HHHCCHHHHHHHHHHCCCEEE
Q ss_conf             974100357677758999516888444----220076999999974890488
Q gi|254780791|r  197 LNTLKEGRTCPRPDIIILARGGGSIED----LWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       197 ~~~~~~~~~~~~~D~iii~RGGGS~eD----L~~FN~e~laraI~~~~iPVi  244 (529)
                      .....+......+|.|||.=|+|+..|    .|.-..-.+.+...+-.+||+
T Consensus       100 ~~~~~~~~~~~~~Dgiii~GG~~~~~~~~~~~~~~~~~~li~~~~~~~~Pil  151 (312)
T 2h2w_A          100 FYTTFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTM  151 (312)
T ss_dssp             HCBCGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             7571998733654479983898676424330009999999999997199827


No 33 
>>1x3e_A Single-strand binding protein; oligonucleotide binding fold, DNA-binding protein, DNA binding protein; 2.15A {Mycobacterium smegmatis} PDB: 1x3f_A 1x3g_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A (A:)
Probab=93.73  E-value=0.35  Score=30.18  Aligned_cols=79  Identities=20%  Similarity=0.411  Sum_probs=57.4

Q ss_pred             CCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC---------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             171899999705---43568886279--9987------48---------9479999973521058668145988999999
Q gi|254780791|r   32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN---------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK   91 (529)
Q Consensus        32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~---------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~   91 (529)
                      +..|.+.|-|..   ++ +..+|..|  |+|-      |.         ..-+.|++|...+..+.-.++.|+.|+|.|+
T Consensus         4 mN~v~l~G~l~~dp~~r-~~~~G~~~~~~~ia~~~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~   82 (165)
T 1x3e_A            4 DTTITVVGNLTADPELR-FTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGSRVIVTGR   82 (165)
T ss_dssp             CCEEEEEEEESSCCEEE-ECTTSCEEEEEEEECCCBC------CCCBCCCCEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred             CCEEEEEEECCCCCEEE-ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCEEEEEEE
T ss_conf             57899999837798799-87999889999999723444445555335421788766363799999997347978999877


Q ss_pred             EEE--ECC-----CCEEEEEEEEEEEC
Q ss_conf             667--528-----84379999971016
Q gi|254780791|r   92 ITT--FPG-----SSKYQIIIESLIPS  111 (529)
Q Consensus        92 ~~~--y~~-----~g~~ql~v~~i~~~  111 (529)
                      +..  |..     +..+.+.+++|...
T Consensus        83 l~~~~~~~~dG~~~~~~~i~a~~i~~~  109 (165)
T 1x3e_A           83 LKQRSFETREGEKRTVVEVEVDEIGPS  109 (165)
T ss_dssp             EEEEEEECCC--EEEEEEEEEEEEEEC
T ss_pred             EEECCCCCCCCCEEEEEEEEEEEECCC
T ss_conf             560652779998899899996653244


No 34 
>>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} (A:1-162)
Probab=93.73  E-value=0.29  Score=30.80  Aligned_cols=87  Identities=13%  Similarity=0.053  Sum_probs=54.8

Q ss_pred             CCEEEEEECCCHH-HH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             5289998478425-89-999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  145 PKIIAVITSPTGA-VI-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       145 p~~i~vits~~~a-~~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      .+|+.|||.++.+ .+ ..+...+.++. +.+.   .-++++.....+.++++.+...       ++| .||+.||||.-
T Consensus        34 ~~~~livtd~~~~~~~~~~~~~~L~~~~-i~~~---~~~~~~~~~~~v~~~~~~~~~~-------~~d-~iiaiGGGs~~  101 (162)
T 3ce9_A           34 FKRVSLYFGEGIYELFGETIEKSIKSSN-IEIE---AVETVKNIDFDEIGTNAFKIPA-------EVD-ALIGIGGGKAI  101 (162)
T ss_dssp             CSEEEEEEETTHHHHHHHHHHHHHHTTT-CEEE---EEEEECCCBHHHHHHHHTTSCT-------TCC-EEEEEESHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHCC-CEEE---EEECCCCCCHHHHHHHHHHHHC-------CCC-EEEEECCCCCC
T ss_conf             7959999896788999999999998779-9899---9857999988999999998643-------688-89970577555


Q ss_pred             HHHHCCHHHHHHHHHH-CC-----CEEEEEECCCC
Q ss_conf             4220076999999974-89-----04885205777
Q gi|254780791|r  223 DLWHFNDEMIVRAIAN-SS-----IPIISAIGHET  251 (529)
Q Consensus       223 DL~~FN~e~laraI~~-~~-----iPVisgIGHE~  251 (529)
                      |.        |++++. ..     ||..+|.|=|.
T Consensus       102 D~--------aK~~a~~~~~~~i~vPTt~~tgse~  128 (162)
T 3ce9_A          102 DA--------VKYXAFLRKLPFISVPTSTSNDGFS  128 (162)
T ss_dssp             HH--------HHHHHHHHTCCEEEEESCCSSGGGT
T ss_pred             CC--------CCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf             53--------1001345667539995145554124


No 35 
>>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} (A:)
Probab=93.69  E-value=0.37  Score=29.95  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=59.8

Q ss_pred             CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             0171899999705---43568886279--998------7489-------4799999735210586681459889999996
Q gi|254780791|r   31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKI   92 (529)
Q Consensus        31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~   92 (529)
                      .+..|-+.|-|..   ++. ..+|..|  |+|      +|..       .-++|++|...+..+.-.++.|+.|+|.|++
T Consensus        15 ~mn~v~l~G~l~~dpei~~-~~~g~~~~~~~la~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~l   93 (153)
T 1z9f_A           15 FFNKIILIGRLVRDPEERY-TLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEM   93 (153)
T ss_dssp             CCCCEEEEEEESSCCEEEE-CC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred             HCCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCCCEEEEEEEE
T ss_conf             4788999999377988998-899988999988770420146774210101244453000000111201588489999966


Q ss_pred             EE--EC-----CCCEEEEEEEEEEECC
Q ss_conf             67--52-----8843799999710168
Q gi|254780791|r   93 TT--FP-----GSSKYQIIIESLIPSG  112 (529)
Q Consensus        93 ~~--y~-----~~g~~ql~v~~i~~~g  112 (529)
                      ..  |.     .+..+.+.+++|....
T Consensus        94 ~~~~~~~~~G~~~~~~~i~a~~i~~l~  120 (153)
T 1z9f_A           94 RMRRWETPTGEKRVSPEVVANVVRFMD  120 (153)
T ss_dssp             EEEC-------CCCEEEEEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEEEEEEEEEECC
T ss_conf             643789999989999999994899876


No 36 
>>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} (A:1-185)
Probab=93.57  E-value=0.57  Score=28.24  Aligned_cols=71  Identities=21%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             CCCEEEEEECCCHHH-----HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             652899984784258-----999999863059758999721001111036799999999741003576777589995168
Q gi|254780791|r  144 IPKIIAVITSPTGAV-----IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       144 ~p~~i~vits~~~a~-----~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      -.+|+.|||.++...     +.+++..+..+. ..+.+| .-+.++.....+.++++.+....       +| .||+=||
T Consensus        32 ~~~~vlivt~~~~~~~~~~~~~~v~~~L~~~~-i~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-------~D-~iIaiGG  101 (185)
T 3bfj_A           32 GGKKALLVTDKGLRAIKDGAVDKTLHYLREAG-IEVAIF-DGVEPNPKDTNVRDGLAVFRREQ-------CD-IIVTVGG  101 (185)
T ss_dssp             TCSEEEEECCTTTC--CCSSHHHHHHHHHHTT-CEEEEE-CCCCSSCBHHHHHHHHHHHHHTT-------CC-EEEEEES
T ss_pred             CCCEEEEEECCCHHHHCCCHHHHHHHHHHHCC-CEEEEE-ECCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEECC
T ss_conf             99869999898667601569999999999769-939998-08579989999999999876229-------98-8999278


Q ss_pred             CCHHHH
Q ss_conf             884442
Q gi|254780791|r  219 GSIEDL  224 (529)
Q Consensus       219 GS~eDL  224 (529)
                      ||.-|.
T Consensus       102 Gs~~D~  107 (185)
T 3bfj_A          102 GSPHDC  107 (185)
T ss_dssp             HHHHHH
T ss_pred             CCCCCH
T ss_conf             740108


No 37 
>>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} (A:1-193)
Probab=92.43  E-value=0.35  Score=30.12  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=50.8

Q ss_pred             CCCEEEEEECCCHHHH----HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             6528999847842589----999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r  144 IPKIIAVITSPTGAVI----RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       144 ~p~~i~vits~~~a~~----~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      -++++.|||+......    ..+...+.+.. ..+.+| .-+-|+-...++.++++.+....       +| .||+=|||
T Consensus        42 g~~~vlivtd~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-------~D-~IIaiGGG  111 (193)
T 1vlj_A           42 GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHG-IEWVEV-SGVKPNPVLSKVHEAVEVAKKEK-------VE-AVLGVGGG  111 (193)
T ss_dssp             TCCEEEEEECSSHHHHSSHHHHHHHHHHHTT-CEEEEE-CCCCSSCBHHHHHHHHHHHHHTT-------CS-EEEEEESH
T ss_pred             CCCEEEEEECCCHHHHCCHHHHHHHHHHHCC-CEEEEE-CCCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCC
T ss_conf             9985899988757887629999999998659-919998-67169999999999999861358-------87-57523886


Q ss_pred             CHHHHHHCCHHHHHHHHHH
Q ss_conf             8444220076999999974
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIAN  238 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~  238 (529)
                      |.-|.        |++++.
T Consensus       112 s~~D~--------aK~~a~  122 (193)
T 1vlj_A          112 SVVDS--------AKAVAA  122 (193)
T ss_dssp             HHHHH--------HHHHHH
T ss_pred             CHHHH--------HHHHHH
T ss_conf             31146--------788899


No 38 
>>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235)
Probab=92.36  E-value=1  Score=25.98  Aligned_cols=85  Identities=20%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             CCCEEEEEECCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             652899984784---25899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  144 IPKIIAVITSPT---GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       144 ~p~~i~vits~~---~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -.++|||+-+++   +...-+.++....++++++..+++.     .+.+|-.+++.+-.        .+|+|++.     
T Consensus        15 ~~k~vgvly~~~e~~s~~~~~~l~~~a~~~Gi~l~~~~v~-----~~~di~~~~~~~~~--------~~dai~~~-----   76 (118)
T 3lft_A           15 NVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP-----STNEIASTVTVXTS--------KVDAIWVP-----   76 (118)
T ss_dssp             TCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES-----SGGGHHHHHHHHTT--------TCSEEEEC-----
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-----CHHHHHHHHHHCCC--------CCEEEEEC-----
T ss_conf             8864689669753129999999998666417568750466-----67999999983678--------86199973-----


Q ss_pred             HHHHHHC-CHHHHHHHHHHCCCEEEEEE
Q ss_conf             4442200-76999999974890488520
Q gi|254780791|r  221 IEDLWHF-NDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       221 ~eDL~~F-N~e~laraI~~~~iPVisgI  247 (529)
                       .|-..+ +-+.++......+||||++-
T Consensus        77 -~d~~v~s~~~~i~~~a~~~~iPv~~~~  103 (118)
T 3lft_A           77 -IDNTIASGFPTVVSSNQSSKKPIYPSA  103 (118)
T ss_dssp             -SCHHHHHTHHHHHHHTTTTCCCEEESS
T ss_pred             -CCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             -870688899999985202478678631


No 39 
>>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} (A:)
Probab=92.12  E-value=1.1  Score=25.75  Aligned_cols=82  Identities=16%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             CCCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC-------CCEEEEEEECCCCCCCC-CCCCCCCEEEEEEE
Q ss_conf             0171899999705---43568886279--9987------48-------94799999735210586-68145988999999
Q gi|254780791|r   31 NLSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN-------HSRIDAIIWKGTLNKIE-FLPEEGIEFLVIGK   91 (529)
Q Consensus        31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~-------~a~i~~~~~~~~~~~~~-~~~~~G~~v~~~g~   91 (529)
                      ++..|.|.|=|..   ++. ..+|..|  |+|-      +.       ..-++|++|...+..+- -.++.|+.|+|.|+
T Consensus         4 ~~N~v~l~G~l~~dpe~~~-~~~g~~~~~f~la~~~~~~~~~~~~~~~t~~~~v~~~~~~a~~~~~~~l~kG~~v~V~G~   82 (301)
T 1se8_A            4 GXNHVYLIGALARDPELRY-TGNGXAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGT   82 (301)
T ss_dssp             CEEEEEEEEEESSCCEEEE-CTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEE
T ss_pred             CCEEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCEEECCEEEEEEEECHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             5149999999366988998-899988999999978955879998973347999999887999999872566878999999


Q ss_pred             EEE--EC-----CCCEEEEEEEEEEECCC
Q ss_conf             667--52-----88437999997101680
Q gi|254780791|r   92 ITT--FP-----GSSKYQIIIESLIPSGS  113 (529)
Q Consensus        92 ~~~--y~-----~~g~~ql~v~~i~~~g~  113 (529)
                      +..  |.     .+..+.++++.|.+.+-
T Consensus        83 l~~~~~~~~dG~~~~~~~i~a~~i~~~~~  111 (301)
T 1se8_A           83 LEYRQWEAPEGGKRSAVNVKALRXEQLGT  111 (301)
T ss_dssp             EEEEEEC-----CEEEEEEEEEEEEECSS
T ss_pred             EEEEEEECCCCCEEEEEEEEEEEEEECCC
T ss_conf             78512398999889999999989998158


No 40 
>>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} (A:1-163)
Probab=91.98  E-value=0.71  Score=27.38  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=58.9

Q ss_pred             CCCCCCCEEEEEECCCH-HHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             31026528999847842-58999-99986305975899972100111103679999999974100357677758999516
Q gi|254780791|r  140 PIPFIPKIIAVITSPTG-AVIRD-ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~-a~~~D-~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      -+..+-+|+.|||.++. ..+.| +...+.+.. +.+  .-..+.++.....+-+++..+...+       +| .||+=|
T Consensus        26 ~l~~~g~r~livtd~~~~~~~~~~v~~~l~~~~-~~~--~~~~~~~~~t~~~v~~~~~~~~~~~-------~d-~iiaiG   94 (163)
T 1jq5_A           26 YLEGIGNKTVVIADEIVWKIAGHTIVNELKKGN-IAA--EEVVFSGEASRNEVERIANIARKAE-------AA-IVIGVG   94 (163)
T ss_dssp             HHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTT-CEE--EEEECCSSCBHHHHHHHHHHHHHTT-------CS-EEEEEE
T ss_pred             HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCC-CEE--EEEEECCCCCHHHHHHHHHHHHHCC-------CC-EEEEEC
T ss_conf             999769938999897578999999999998779-969--9998499999999999999987429-------98-899846


Q ss_pred             CCCHHHHHHCCHHHHHHHHHHC-CC-----EEEEEECCCC
Q ss_conf             8884442200769999999748-90-----4885205777
Q gi|254780791|r  218 GGSIEDLWHFNDEMIVRAIANS-SI-----PIISAIGHET  251 (529)
Q Consensus       218 GGS~eDL~~FN~e~laraI~~~-~i-----PVisgIGHE~  251 (529)
                      |||.-|+        |++++.+ .+     |...|.|=|.
T Consensus        95 GGs~~D~--------aK~~~~~~~~p~i~iPTt~~t~ae~  126 (163)
T 1jq5_A           95 GGKTLDT--------AKAVADELDAYIVIVPTAASTDAPT  126 (163)
T ss_dssp             SHHHHHH--------HHHHHHHHTCEEEEEESSCCSSCTT
T ss_pred             CCCCCCC--------HHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf             8601002--------0110020479789970655566556


No 41 
>>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134} (A:1-161)
Probab=91.72  E-value=0.9  Score=26.45  Aligned_cols=82  Identities=21%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             CCCEEEEEECCCHHHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             652899984784258999-9998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRD-ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D-~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      -.+++.|||.+..+++.| +...+.++   .+.+| ..+.++-...++.++.+.+...+       +| .||+=||||.-
T Consensus        35 ~~~~~liv~~~~~~~~~~~~~~~l~~~---~i~~~-~~~~~~~~~~~v~~~~~~~~~~~-------~d-~IiaiGGGs~~  102 (161)
T 3jzd_A           35 GAKRALVLCTPNQQAEAERIADLLGPL---SAGVY-AGAVXHVPIESARDATARAREAG-------AD-CAVAVGGGSTT  102 (161)
T ss_dssp             TCSCEEEECCGGGHHHHHHHHHHHGGG---EEEEE-CCCCTTCBHHHHHHHHHHHHHHT-------CS-EEEEEESHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHCCC---CCEEE-ECCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCCCCC
T ss_conf             998699998176550499999986137---71899-45213989899999998753148-------97-89842785544


Q ss_pred             HHHHCCHHHHHHHHHH-CCCEEEE
Q ss_conf             4220076999999974-8904885
Q gi|254780791|r  223 DLWHFNDEMIVRAIAN-SSIPIIS  245 (529)
Q Consensus       223 DL~~FN~e~laraI~~-~~iPVis  245 (529)
                      |.        |++++. ..+|+|+
T Consensus       103 D~--------aK~~a~~~~~p~i~  118 (161)
T 3jzd_A          103 GL--------GKAIALETGXPIVA  118 (161)
T ss_dssp             HH--------HHHHHHHHCCCEEE
T ss_pred             CH--------HHHHHHCCCCEEEE
T ss_conf             34--------43101121220576


No 42 
>>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* (A:1-165)
Probab=91.15  E-value=0.91  Score=26.43  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=55.0

Q ss_pred             CCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             6528999847842-589999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  144 IPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       144 ~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      -.+++.|||.+.. .++.|-+...-++..+++.+|.. +.++-....+-++++.+....    ..++| .||+=||||.-
T Consensus        30 ~~~~~livtd~~~~~~~~~~i~~~L~~~~~~~~~~~~-~~~~p~~~~v~~~~~~~~~~~----~~~~d-~iiaiGGGs~~  103 (165)
T 1xah_A           30 QFDQSFLLIDEYVNQYFANKFDDILSYENVHKVIIPA-GEKTKTFEQYQETLEYILSHH----VTRNT-AIIAVGGGATG  103 (165)
T ss_dssp             TCSCEEEEEEHHHHHHHHHHHC------CEEEEEECS-GGGGCSHHHHHHHHHHHHTTC----CCTTC-EEEEEESHHHH
T ss_pred             HCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHH----HHCCC-CEEEECCHHHH
T ss_conf             3597999999857899999999999777957999728-876677878999888888765----41234-21452427888


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             42200769999999748904885
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVis  245 (529)
                      |++.|     +...+..++|+|+
T Consensus       104 D~ak~-----~a~~~~~~~p~i~  121 (165)
T 1xah_A          104 DFAGF-----VAATLLRGVHFIQ  121 (165)
T ss_dssp             HHHHH-----HHHHBTTCCEEEE
T ss_pred             HHHHH-----HHHHHCCCCCEEE
T ss_conf             78766-----0253237862477


No 43 
>>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} (A:)
Probab=90.79  E-value=0.71  Score=27.40  Aligned_cols=88  Identities=8%  Similarity=-0.003  Sum_probs=65.1

Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             63102652899984784258999999863059758999721001111036799999999741003576777589995168
Q gi|254780791|r  139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      -+-|..+.+|+||--..+..++.+.+.+..+- +++.+++...-.. .+                .....+|.|||.=|+
T Consensus         6 ~~~~~~~~~i~vid~~~~~~~~~~~~~l~~~g-~~~~v~~~~~~~~-~~----------------~~~~~~Dgiii~Gg~   67 (239)
T 1o1y_A            6 IHHHHHHVRVLAIRHVEIEDLGXXEDIFREKN-WSFDYLDTPKGEK-LE----------------RPLEEYSLVVLLGGY   67 (239)
T ss_dssp             ----CCCCEEEEECSSTTSSCTHHHHHHHHTT-CEEEEECGGGTCC-CS----------------SCGGGCSEEEECCCS
T ss_pred             CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCC-CEEEEEECCCCCC-CC----------------CCHHHCCEEEECCCC
T ss_conf             44345640799997999889769999999788-9799998989877-87----------------674447989988999


Q ss_pred             CCHHH----HHHCCHHHHHHHHHHCCCEEE
Q ss_conf             88444----220076999999974890488
Q gi|254780791|r  219 GSIED----LWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       219 GS~eD----L~~FN~e~laraI~~~~iPVi  244 (529)
                      +|..|    -|......+++..++..+||+
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~~~~Pil   97 (239)
T 1o1y_A           68 XGAYEEEKYPFLKYEFQLIEEILKKEIPFL   97 (239)
T ss_dssp             CCTTCTTTCTHHHHHHHHHHHHHHHTCCEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             987777678322999999999997699999


No 44 
>>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} (A:)
Probab=90.69  E-value=0.49  Score=28.81  Aligned_cols=77  Identities=6%  Similarity=0.119  Sum_probs=54.0

Q ss_pred             CCCEEEEEEECC---CCCCCCCCE--EEEEEEC--------CCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE--C
Q ss_conf             171899999705---435688862--7999874--------894799999735210586681459889999996675--2
Q gi|254780791|r   32 LSHVCVRGEISG---YRGIHSSGH--AYFSLKD--------NHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF--P   96 (529)
Q Consensus        32 ~~~~~v~gEis~---~~~~~~sGH--~Yf~lkd--------~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y--~   96 (529)
                      +..|-+.|-|.+   ++. ..+|.  +.|.+..        ...-++|++|...+..+.-.++-|+.|+|.|++..+  .
T Consensus        11 ~N~v~l~G~l~~dp~~~~-t~~g~~~~~~~~~~~~~~~~~~~~~~i~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~   89 (108)
T 3koj_A           11 XNSCILQATVVEAPQLRY-AQDNQTPVAEXVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL   89 (108)
T ss_dssp             CEEEEEEEEEEEEEEEEE-CTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred             CCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEECEEEE
T ss_conf             899999999877976888-2899879999999968984578976999999789999999860899999999998780789


Q ss_pred             -----CCCEEEEEEEEEE
Q ss_conf             -----8843799999710
Q gi|254780791|r   97 -----GSSKYQIIIESLI  109 (529)
Q Consensus        97 -----~~g~~ql~v~~i~  109 (529)
                           .+..++++++.|.
T Consensus        90 ~~dG~~~~~~~i~a~~i~  107 (108)
T 3koj_A           90 KPDGNREKQTELTVTRVH  107 (108)
T ss_dssp             ------CCEEEEEEEEEE
T ss_pred             CCCCCEEEEEEEEEEECC
T ss_conf             999989999999999716


No 45 
>>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} (A:1-159)
Probab=90.66  E-value=1.4  Score=24.83  Aligned_cols=83  Identities=18%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             CCCCEEEEEECCCHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             26528999847842589999-99863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDI-LQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~-~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      ...+++-|||.++.+.+-|- ...+.+.   .+.+|+. +-++-....+-++++.+...       ++| .||+=||||.
T Consensus        32 ~g~~~~livtd~~~~~~~~~v~~~l~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~-------~~d-~iiaiGGGsv   99 (159)
T 3hl0_A           32 LGLSRALVLSTPQQKGDAEALASRLGRL---AAGVFSE-AAXHTPVEVTKTAVEAYRAA-------GAD-CVVSLGGGST   99 (159)
T ss_dssp             TTCCCEEEECCGGGHHHHHHHHHHHGGG---EEEEECC-CCTTCBHHHHHHHHHHHHHT-------TCS-EEEEEESHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHCC---CCEEEEC-CCCCCCHHHHHHHHHHHHHC-------CCC-EEEEECCCCC
T ss_conf             3998699997842214799999986068---8289962-61699989999999999963-------998-8999589751


Q ss_pred             HHHHHCCHHHHHHHHHH-CCCEEEE
Q ss_conf             44220076999999974-8904885
Q gi|254780791|r  222 EDLWHFNDEMIVRAIAN-SSIPIIS  245 (529)
Q Consensus       222 eDL~~FN~e~laraI~~-~~iPVis  245 (529)
                      -|+        |++++. ..+|+|+
T Consensus       100 iD~--------AK~~a~~~~~p~i~  116 (159)
T 3hl0_A          100 TGL--------GKAIALRTDAAQIV  116 (159)
T ss_dssp             HHH--------HHHHHHHHCCEEEE
T ss_pred             HHH--------HHHHHHCCCCCEEE
T ss_conf             101--------12322036786577


No 46 
>>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} (A:1-199)
Probab=90.46  E-value=0.61  Score=27.96  Aligned_cols=81  Identities=16%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------CCCHHHHHHCCH---------HHHHHHHHHCCCEEEE
Q ss_conf             111103679999999974100357677758999516-------888444220076---------9999999748904885
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG-------GGSIEDLWHFND---------EMIVRAIANSSIPIIS  245 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG-------GGS~eDL~~FN~---------e~laraI~~~~iPVis  245 (529)
                      -......+|.++++.++...+      +- +||.+|       ||.+++.....+         ..+.++|..||.|||+
T Consensus        27 ~~~~~~~~l~~~l~~~~~d~~------~~-vvvl~g~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia   99 (199)
T 2ej5_A           27 FTEQMNAEVTKALKQAGADPN------VR-CVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVA   99 (199)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTT------CC-EEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             899999999999999974999------33-99973343220010228886420001256664112677888852984899


Q ss_pred             EE-CCCCCCH-HHHHHHCCCCCCCHH
Q ss_conf             20-5777525-898864123777214
Q gi|254780791|r  246 AI-GHETDWT-LADYAADLRAPTPTG  269 (529)
Q Consensus       246 gI-GHE~D~T-l~D~VAD~Ra~TPTa  269 (529)
                      +| ||=.--- -.=+.+|.|..+|.+
T Consensus       100 ~i~G~a~GgG~~lal~~D~~ia~~~~  125 (199)
T 2ej5_A          100 AVNGAAAGAGMSLALACDFRLLSEKA  125 (199)
T ss_dssp             EECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             EECCEEEHHHHHHHHHCCCCCCCCCC
T ss_conf             97977772658999830511005451


No 47 
>>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Bordetella parapertussis} (A:)
Probab=89.62  E-value=0.88  Score=26.55  Aligned_cols=76  Identities=16%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----------------HHHHHCCHHHHHHHHHHCCCEEEEEE-
Q ss_conf             036799999999741003576777589995168884-----------------44220076999999974890488520-
Q gi|254780791|r  186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----------------EDLWHFNDEMIVRAIANSSIPIISAI-  247 (529)
Q Consensus       186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----------------eDL~~FN~e~laraI~~~~iPVisgI-  247 (529)
                      -..++.++++.++..        ...+||++|+|..                 ..-+..+...+...+..||.|||.+| 
T Consensus        35 ~~~~l~~~l~~~~~d--------~~~vvvi~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~  106 (254)
T 3isa_A           35 LVEALIDGVDAAHRE--------QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH  106 (254)
T ss_dssp             HHHHHHHHHHHHHHT--------TCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHCC--------CCEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCC
T ss_conf             999999999987579--------956999955643334432135443100000112456778888874048720001212


Q ss_pred             CCCC-CCHHHHHHHCCCCCCCHH
Q ss_conf             5777-525898864123777214
Q gi|254780791|r  248 GHET-DWTLADYAADLRAPTPTG  269 (529)
Q Consensus       248 GHE~-D~Tl~D~VAD~Ra~TPTa  269 (529)
                      ||=. -=.-.=+.+|.|..|+.+
T Consensus       107 G~a~GgG~~lal~cD~ria~~~a  129 (254)
T 3isa_A          107 GRNFGAGVDLFAACKWRYCTPEA  129 (254)
T ss_dssp             SEEETHHHHHHHHSSEEEECTTC
T ss_pred             CCCCCCCCCCCCCCCEEEECCCC
T ss_conf             23555454445421246632355


No 48 
>>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} (A:1-160)
Probab=89.60  E-value=0.043  Score=38.22  Aligned_cols=104  Identities=16%  Similarity=0.255  Sum_probs=55.6

Q ss_pred             CCCCCEEEEEECCCH-HH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             026528999847842-58-9999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r  142 PFIPKIIAVITSPTG-AV-IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       142 P~~p~~i~vits~~~-a~-~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      ...++|+.|||++.. .. ...+...+.+ ..+++.+|+... .+-....+.++++.+.....    .++| .||+=|||
T Consensus        23 ~~~~~~~livt~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~----~~~d-~iiaiGGG   95 (160)
T 3clh_A           23 IKLKQKALIISDSIVAGLHLPYLLERLKA-LEVRVCVIESGE-KYKNFHSLERILNNAFEMQL----NRHS-LMIALGGG   95 (160)
T ss_dssp             EECSSCEEEEEEHHHHTTTHHHHHTTEEC-SCEEEEEECSSG-GGCSHHHHHHHHHHHHHTTC----CTTC-EEEEEESH
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHHH-CCCEEEEECCCC-CCCCHHHHHHHHHHHHHHCC----CCCC-CEEEECCH
T ss_conf             05789799998983568899999998630-794799977985-54998999999999975024----6654-13554235


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             844422007699999997489048852057775
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETD  252 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D  252 (529)
                      |.-|+.-|......+.+----||...|-|+|..
T Consensus        96 s~~D~aK~~a~~~~~~~p~i~VPTt~~t~~e~s  128 (160)
T 3clh_A           96 VISDMVGFASSIYFRGIDFINIPTTLLAQVDAS  128 (160)
T ss_dssp             HHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHCCCCEEECCCCHHHCCCCC
T ss_conf             888999999988706863120255065323343


No 49 
>>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} (A:)
Probab=89.44  E-value=1.8  Score=23.85  Aligned_cols=80  Identities=14%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC--------CEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             0171899999705---43568886279--998------7489--------479999973521058668145988999999
Q gi|254780791|r   31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH--------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGK   91 (529)
Q Consensus        31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~--------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~   91 (529)
                      .+..|-|.|-|.+   ++ ...+|..|  |+|      ||..        .-++|.+|...+..+.-.++.|+.|+|.|+
T Consensus         4 ~mN~v~i~G~l~~dp~~~-~~~~g~~~~~f~la~~~~~k~~~~~~~~~~t~~~~v~~~~~~Ae~~~~~l~KG~~V~V~G~   82 (145)
T 1qvc_A            4 GVNKVILVGNLGQDPEVR-YMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ   82 (145)
T ss_dssp             CEEEEEEEEEESSCCEEE-CCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred             CCEEEEEEEECCCCCEEE-ECCCCCEEEEEEEEECCCEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEEEEE
T ss_conf             513999999888898898-8899988999999833210025677302111167788975156766555123778999978


Q ss_pred             EEE--EC-CCC----EEEEEEEEEEEC
Q ss_conf             667--52-884----379999971016
Q gi|254780791|r   92 ITT--FP-GSS----KYQIIIESLIPS  111 (529)
Q Consensus        92 ~~~--y~-~~g----~~ql~v~~i~~~  111 (529)
                      +..  |. +.|    .+.|.+++|.+.
T Consensus        83 l~~~~~~~kdG~~~~~~~i~a~~i~~l  109 (145)
T 1qvc_A           83 LRTRKWTDQSGQDRYTTEVVVNVGGTM  109 (145)
T ss_dssp             EEEEEECSSSSCEEEEEEEECTTCEEE
T ss_pred             EEEEEEECCCCCEEEEEEEEEECCCCE
T ss_conf             886561989999899999999247877


No 50 
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:61-168,A:301-332)
Probab=89.43  E-value=1.2  Score=25.24  Aligned_cols=111  Identities=17%  Similarity=0.211  Sum_probs=78.3

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -..||||.+. +..-+.+|++-+..   ..++.++++++.-+-    .....+++.+...       ++|.||+.-..  
T Consensus         8 S~~Igviv~~~~n~f~~~il~gie~~a~~~Gy~vii~~~~~~~----~~~~~~i~~l~~~-------~vDGiIi~~~~--   74 (140)
T 3kjx_A            8 VNLVAVIIPSLSNXVFPEVLTGINQVLEDTELQPVVGVTDYLP----EKEEKVLYEXLSW-------RPSGVIIAGLE--   74 (140)
T ss_dssp             CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCH----HHHHHHHHHHHTT-------CCSEEEEECSC--
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC----HHHHHHHHHHHHC-------CCCEEEEEECC--
T ss_conf             6067762354445320233313334221000011101123542----1258999999953-------88514543102--


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHC
Q ss_conf             4442200769999999748904885205777525898864123777214567633
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAV  275 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElav  275 (529)
                             .+...+..+....||||.-=.+-.+..+.=-..|+|...--.|||++.
T Consensus        75 -------~~~~~v~~l~~~~IPvV~id~~~~~~~~~~V~~D~~~~~~~~~~~~~~  122 (140)
T 3kjx_A           75 -------HSEAARAXLDAAGIPVVEIXDSDGKPVDAXVGISCRLEIGRKAAEIIA  122 (140)
T ss_dssp             -------CCHHHHHHHHHCSSCEEEEEECSSCCSSEEEEECCHHHHHHHHHHHHH
T ss_pred             -------CCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf             -------310134443116886278840246888877753199999999999999


No 51 
>>2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} (A:)
Probab=89.34  E-value=1  Score=26.06  Aligned_cols=78  Identities=22%  Similarity=0.201  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHH---H---HCCH-----------HHHHHHHHHCCCE
Q ss_conf             11036799999999741003576777589995168884----442---2---0076-----------9999999748904
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDL---W---HFND-----------EMIVRAIANSSIP  242 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL---~---~FN~-----------e~laraI~~~~iP  242 (529)
                      -....+|..++..++..        .+++||++|+|..    -|+   .   ..++           ..+..+|..||.|
T Consensus        50 ~~~~~~l~~al~~~~~d--------~~~~vVi~g~g~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkp  121 (291)
T 2fbm_A           50 TEVIKEIVNALNSAAAD--------DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKP  121 (291)
T ss_dssp             HHHHHHHHHHHHHHHHS--------SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHHHHC--------CCEEEEEECCCCEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999998709--------9779999078630212544101000122333211245544334455441002101


Q ss_pred             EEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             88520-57775-25898864123777214
Q gi|254780791|r  243 IISAI-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       243 VisgI-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      ||++| ||=.= =...=+.+|+|..|+++
T Consensus       122 vIaav~G~a~GgG~~lal~~D~~ia~~~a  150 (291)
T 2fbm_A          122 IVVSVNGPAIGLGASILPLCDLVWANEKA  150 (291)
T ss_dssp             EEEEECSCEETHHHHTGGGSSEEEEETTC
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             02000014644343310024314401110


No 52 
>>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA hydration, sodium ION, quadruplex DNA, DNA-binding protein/DNA complex; 1.86A {Sterkiella nova} (A:1-180)
Probab=89.13  E-value=1.8  Score=23.68  Aligned_cols=72  Identities=6%  Similarity=0.054  Sum_probs=50.9

Q ss_pred             CEEEEEEECCCCCC-CCCC---EEEEEEECCC-------------CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEE
Q ss_conf             18999997054356-8886---2799987489-------------4799999735210586681459889999-996675
Q gi|254780791|r   34 HVCVRGEISGYRGI-HSSG---HAYFSLKDNH-------------SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTF   95 (529)
Q Consensus        34 ~~~v~gEis~~~~~-~~sG---H~Yf~lkd~~-------------a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y   95 (529)
                      .|-|.|-|..+... ++.|   .+-|+|+|..             ..|+|.+|+.+...|+.-+..||=|+++ .++..|
T Consensus        51 ~vnvigVV~d~~~P~~s~g~d~~~tl~I~D~S~~~~~~~~~~~~~~gl~v~iF~~~~~~LP~V~~~GDIIll~~v~v~~~  130 (180)
T 1jb7_A           51 PQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLY  130 (180)
T ss_dssp             CEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCEETCEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECCCCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE
T ss_conf             06899999862386336997189999998067765554555678886089997489778998577899999998899998


Q ss_pred             CCCCEEEEEEEE
Q ss_conf             288437999997
Q gi|254780791|r   96 PGSSKYQIIIES  107 (529)
Q Consensus        96 ~~~g~~ql~v~~  107 (529)
                        +|..+++...
T Consensus       131 --~g~~~~v~~~  140 (180)
T 1jb7_A          131 --NGQRQFNANV  140 (180)
T ss_dssp             --TTEEEEEEET
T ss_pred             --CCEEEEEECC
T ss_conf             --8877898458


No 53 
>>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:1-104,A:238-280)
Probab=89.03  E-value=1.9  Score=23.62  Aligned_cols=87  Identities=11%  Similarity=0.076  Sum_probs=59.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             289998478425899999986305---97589997210011110367999999997410035767775899951688844
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      -+||||.+.+..-+.++++.+++.   .++++.++.   -+++...+-.++|+.+-..       ++|.||++=-+..  
T Consensus         2 itIGII~~~sn~f~~~i~~gie~~a~~~G~~v~i~~---~~~~d~~~q~~~Le~li~~-------~vDGIIi~~~d~~--   69 (147)
T 2h3h_A            2 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV---PQKEDINAQLQMLESFIAE-------GVNGIAIAPSDPT--   69 (147)
T ss_dssp             CEEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC---CSSSCHHHHHHHHHHHHHT-------TCSEEEECCSSTT--
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE---CCCCCHHHHHHHHHHHHHC-------CCCEEEEECCCHH--
T ss_conf             699994899998999999999999998199799997---9999999999999999976-------9999999725034--


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             422007699999997489048852057
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                           -.....+.+.+..||||.==..
T Consensus        70 -----~~~~~i~~l~~~gIPVV~vd~~   91 (147)
T 2h3h_A           70 -----AVIPTIKKALEMGIPVVTLDTD   91 (147)
T ss_dssp             -----TTHHHHHHHHHTTCCEEEESSC
T ss_pred             -----HHHHHHHHHHHCCCCEEEEECC
T ss_conf             -----4248999987435624999335


No 54 
>>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:)
Probab=89.02  E-value=1.1  Score=25.56  Aligned_cols=74  Identities=14%  Similarity=0.254  Sum_probs=48.1

Q ss_pred             CCEEEEEEE------CCCCCCCCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCC-----C
Q ss_conf             718999997------0543568886-27999874894799999735210586681459889999-996675288-----4
Q gi|254780791|r   33 SHVCVRGEI------SGYRGIHSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGS-----S   99 (529)
Q Consensus        33 ~~~~v~gEi------s~~~~~~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~-----g   99 (529)
                      .++.|+|-|      .+|+.....| .+.+.|.|+.+.|+|++|...+....-.+++|+-+.+. +.|..+.++     +
T Consensus        15 ~~~~I~~rV~~~~~~~~~~~~~~~~~~~~~~l~De~G~I~~~i~~~~~~~f~~~l~eG~vy~i~~~~V~~~~~~~~~~~~   94 (114)
T 1ynx_A           15 NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTH   94 (114)
T ss_dssp             CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSS
T ss_pred             CCEEEEEEEEEECCCEEEECCCCCCEEEEEEEECCCCCEEEEECHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCC
T ss_conf             96899999977225614767999745999999948996999984146445666502698899934399977686202798


Q ss_pred             EEEEEEE
Q ss_conf             3799999
Q gi|254780791|r  100 KYQIIIE  106 (529)
Q Consensus       100 ~~ql~v~  106 (529)
                      .|++...
T Consensus        95 ~~~i~f~  101 (114)
T 1ynx_A           95 PYELNLD  101 (114)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEC
T ss_conf             7899977


No 55 
>>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} (A:)
Probab=88.97  E-value=1.9  Score=23.59  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             CCEEEEEEECC---CCCCCCCCEEE--EEE------ECC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE-
Q ss_conf             71899999705---43568886279--998------748------9479999973521058668145988999999667-
Q gi|254780791|r   33 SHVCVRGEISG---YRGIHSSGHAY--FSL------KDN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT-   94 (529)
Q Consensus        33 ~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~-   94 (529)
                      ..|-+.|-|.+   ++. ..+|..|  |+|      +|.      ..-++|+.|...+....+  +-|+.|.|.|++.. 
T Consensus         8 n~v~l~G~i~~dp~~r~-t~~G~~~~~~~la~~~~~~~~~~~~~~t~~~~v~~~g~~Ae~~~l--~kG~~V~V~G~l~~~   84 (103)
T 3k8a_A            8 NLVSLAALIEKAFPIRY-TPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQY--RQGDCATVEGFLAQK   84 (103)
T ss_dssp             EEEEEEEEEEEECCCEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTT--CTTCEEEEEEEEEES
T ss_pred             CEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEHHHHHHHHH--CCCCEEEEEEEEEEC
T ss_conf             47999999878874689-999976999999874544158870215799999999488566644--899999999993750


Q ss_pred             -ECCCCEEEEEEEEEEEC
Q ss_conf             -52884379999971016
Q gi|254780791|r   95 -FPGSSKYQIIIESLIPS  111 (529)
Q Consensus        95 -y~~~g~~ql~v~~i~~~  111 (529)
                       |.. ....+.+++|+.-
T Consensus        85 ~~~~-~~~~v~~~~i~~l  101 (103)
T 3k8a_A           85 SRRS-LMPMLRIQNIKEY  101 (103)
T ss_dssp             SSSC-CCEEEEEEEEEEC
T ss_pred             CCCC-CEEEEEEEEEEEC
T ss_conf             4668-7489999899981


No 56 
>>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} (A:)
Probab=88.90  E-value=1.9  Score=23.55  Aligned_cols=43  Identities=12%  Similarity=0.094  Sum_probs=17.5

Q ss_pred             CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             7758999516888444220076999999974890488520577
Q gi|254780791|r  208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE  250 (529)
Q Consensus       208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE  250 (529)
                      +.|++++=|||-....-...|-..++..-..+.+|||.=..|-
T Consensus       241 N~~~~l~~RG~~~~~n~~~~di~~~~~~~~~~~lpVivD~SH~  283 (370)
T 1of8_A          241 NEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHG  283 (370)
T ss_dssp             CSCEEEEECCCTTCCCCSHHHHHHHHHHCCTTCCCEEEESSGG
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             8761200364688777689999999998750598279854678


No 57 
>>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} (A:1-181)
Probab=88.71  E-value=2  Score=23.46  Aligned_cols=94  Identities=17%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             CCCCEEEEEECCCHH--HHHHHHHHHHHC------CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf             265289998478425--899999986305------97-589997210011110367999999997410035767775899
Q gi|254780791|r  143 FIPKIIAVITSPTGA--VIRDILQRISCR------FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII  213 (529)
Q Consensus       143 ~~p~~i~vits~~~a--~~~D~~~~~~~r------~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii  213 (529)
                      ..++|+.|||++..+  ....+...+...      |+ ..+..++. +.-+-....+-+.++.+.....  ...+. ..|
T Consensus        34 ~~~~r~~ivtd~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~--~~~k~-~~i  109 (181)
T 1sg6_A           34 CSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPP-GEVSKSRQTKADIEDWMLSQNP--PCGRD-TVV  109 (181)
T ss_dssp             SCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECS-SGGGSSHHHHHHHHHHHHTSSS--CCCTT-CEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHCCC--CCCCC-CEE
T ss_conf             7998189998896579899999999987175224676248998379-9553999999999999985354--67887-669


Q ss_pred             EECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             95168884442200769999999748904885
Q gi|254780791|r  214 LARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       214 i~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      |+=||||.-|..-     .+...+..++|+|+
T Consensus       110 iaiGGG~v~D~ak-----~~a~~~~~~ip~i~  136 (181)
T 1sg6_A          110 IALGGGVIGDLTG-----FVASTYMRGVRYVQ  136 (181)
T ss_dssp             EEEESHHHHHHHH-----HHHHHGGGCCEEEE
T ss_pred             EEECCCCHHHHHH-----HHHHHHHCCCCEEE
T ss_conf             9955850324567-----77777626874354


No 58 
>>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} (A:)
Probab=88.07  E-value=0.74  Score=27.23  Aligned_cols=79  Identities=14%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             CCCCEEEEEEEC---CCCCCCCCCEEE--EEEE------CCC--------CEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf             017189999970---543568886279--9987------489--------479999973521058668145988999999
Q gi|254780791|r   31 NLSHVCVRGEIS---GYRGIHSSGHAY--FSLK------DNH--------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGK   91 (529)
Q Consensus        31 ~~~~~~v~gEis---~~~~~~~sGH~Y--f~lk------d~~--------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~   91 (529)
                      ++.+|-|.|-|.   .++. ..+|..|  |+|-      |..        .-++|++|...+..+.-.++.|+.|+|.|+
T Consensus         5 ~mn~v~l~Grl~~dPe~~~-~~~G~~~~~f~la~~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~   83 (178)
T 1eqq_A            5 GVNKVILVGNLGQDPEVRY-MPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ   83 (178)
T ss_dssp             CEEEEEEEEEESSSCCCCE-ETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred             CCCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEEE
T ss_conf             6758999999687987988-899998999999973652316788310001488636454899999987258998999989


Q ss_pred             EEE--ECC-CC----EEEEEEEEEEE
Q ss_conf             667--528-84----37999997101
Q gi|254780791|r   92 ITT--FPG-SS----KYQIIIESLIP  110 (529)
Q Consensus        92 ~~~--y~~-~g----~~ql~v~~i~~  110 (529)
                      +..  |.. .|    .+.|.++.|..
T Consensus        84 l~~~~~~~~dG~~~~~~~i~a~~i~~  109 (178)
T 1eqq_A           84 LRTRKWTDQSGQDRYTTEVVVNVGGT  109 (178)
T ss_dssp             EEEEEEECSSSEEEEEEEEECSSSCC
T ss_pred             EEECCEECCCCCEEEEEEEEEEECCC
T ss_conf             76041499999889999999974473


No 59 
>>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286)
Probab=87.92  E-value=2  Score=23.41  Aligned_cols=107  Identities=7%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             CCCEEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HHHCCCCCCCCCCEEEE
Q ss_conf             6528999847842----58999999863059758999721001111036799999999-----74100357677758999
Q gi|254780791|r  144 IPKIIAVITSPTG----AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQL-----NTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       144 ~p~~i~vits~~~----a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~-----~~~~~~~~~~~~D~iii  214 (529)
                      -|++|+||+.++.    +....+.+.+.++. +++.+.+..--......+....+...     ...........+|+||+
T Consensus         3 ~~~~i~ii~~~~~~~~~~~~~~i~~~L~~~g-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~   81 (149)
T 1u0t_A            3 AHRSVLLVVHTGRDEATETARRVEKVLGDNK-IALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV   81 (149)
T ss_dssp             --CEEEEEESSSGGGGSHHHHHHHHHHHTTT-CEEEEEC-----------------------------------CCCEEE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHCC-CEEEEEECHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             8889999971999899999999999999789-989998410210465446720344227642102554344456558999


Q ss_pred             ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE-EECC---CCCCHHHHHH
Q ss_conf             5168884442200769999999748904885-2057---7752589886
Q gi|254780791|r  215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIIS-AIGH---ETDWTLADYA  259 (529)
Q Consensus       215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVis-gIGH---E~D~Tl~D~V  259 (529)
                      .=|=|.+-        ..++.+....+||+. ..||   =+++..-|+-
T Consensus        82 lGGDGT~L--------~a~~~~~~~~~PilgIn~G~lGFL~~~~~~d~~  122 (149)
T 1u0t_A           82 LGGDGTFL--------RAAELARNASIPVLGVNLGRIGFLAEAEAEAID  122 (149)
T ss_dssp             EECHHHHH--------HHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHH
T ss_pred             ECCCHHHH--------HHHHHHCCCCCCEEEECCCCCEEEECCCHHHHH
T ss_conf             75877899--------999975035883798578830052124756789


No 60 
>>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} (A:1-113)
Probab=87.90  E-value=2.2  Score=23.06  Aligned_cols=78  Identities=12%  Similarity=0.160  Sum_probs=58.7

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCEEEEEEEEEEEC------CCCEEEEEE
Q ss_conf             7189999970543568886279998748947999997352105-866814598899999966752------884379999
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK-IEFLPEEGIEFLVIGKITTFP------GSSKYQIII  105 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~-~~~~~~~G~~v~~~g~~~~y~------~~g~~ql~v  105 (529)
                      ..|.|.|=|.++|.  .++=.+++|.|..+.+.|++-+..... .--.+..|.-|.+.|.+.--+      +.|.|.+.+
T Consensus        17 ~~V~i~Gwv~~~R~--~g~l~F~~lrD~s~~iQ~v~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~~~g~~Ei~~   94 (113)
T 1l0w_A           17 EEVVLEGWVNRRRD--LGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVEL   94 (113)
T ss_dssp             CEEEEEEEEEEEEE--CSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEE
T ss_pred             CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf             98999999871884--8982999999698759999968842289995699987899999999278768867887399999


Q ss_pred             EEEEECC
Q ss_conf             9710168
Q gi|254780791|r  106 ESLIPSG  112 (529)
Q Consensus       106 ~~i~~~g  112 (529)
                      ++++.-+
T Consensus        95 ~~i~il~  101 (113)
T 1l0w_A           95 SALEVLA  101 (113)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
T ss_conf             9999987


No 61 
>>3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} (A:1-265)
Probab=87.69  E-value=2.1  Score=23.21  Aligned_cols=79  Identities=18%  Similarity=0.118  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHH---------------CCHHHHHHHHHHCCCEEEE
Q ss_conf             1036799999999741003576777589995168884----44220---------------0769999999748904885
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWH---------------FNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~---------------FN~e~laraI~~~~iPVis  245 (529)
                      ....+|..++..++...      .+.+|||..|||..    -|++.               .....+..++..+|.|||+
T Consensus        54 ~m~~~l~~~~~~~~~d~------~~~~vVl~~g~~~~Fs~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Ia  127 (265)
T 3h02_A           54 LTVKEXIQALADARYDD------NVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVA  127 (265)
T ss_dssp             HHHHHHHHHHHHHHHCT------TCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHHHCC------CCCEEEEECCCCCEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             99999999999986298------851799957988300045107776422543201345431003678876235882899


Q ss_pred             EECCCCCCHHHH--HHHCCCCCCCHH
Q ss_conf             205777525898--864123777214
Q gi|254780791|r  246 AIGHETDWTLAD--YAADLRAPTPTG  269 (529)
Q Consensus       246 gIGHE~D~Tl~D--~VAD~Ra~TPTa  269 (529)
                      +|-=-.==--+.  +.+|.|..|+.+
T Consensus       128 av~G~a~GgG~~lal~~D~~ia~~~a  153 (265)
T 3h02_A          128 XVAGYSIGGGHVLHXXCDLTIAAENA  153 (265)
T ss_dssp             EECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             EEECEEECCCCCEEECCCEEEECCCC
T ss_conf             95070442643101145412416986


No 62 
>>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} (A:1-127)
Probab=87.34  E-value=1.4  Score=24.76  Aligned_cols=73  Identities=16%  Similarity=0.232  Sum_probs=48.5

Q ss_pred             CCEEEEEEECCC---C---CCCCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECC-----CC
Q ss_conf             718999997054---3---568886-27999874894799999735210586681459889999-99667528-----84
Q gi|254780791|r   33 SHVCVRGEISGY---R---GIHSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPG-----SS   99 (529)
Q Consensus        33 ~~~~v~gEis~~---~---~~~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~-----~g   99 (529)
                      .++.|+|-|...   +   .....| ++.|.|.|+...|+|++|...+....-.+++|+-+.+. ++|.-|..     .+
T Consensus        19 ~~~~i~~RV~~~~~~~~~~~~~~~~~~~~~~l~De~G~I~~~~~~~~~~~f~~~l~~G~vy~I~~~~V~~~~~~~~~~~~   98 (127)
T 1jmc_A           19 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKN   98 (127)
T ss_dssp             CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCCCCC
T ss_pred             CCEEEEEEEEEECCCEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCHHCCCCEECCCEEEECCCEEEECCCCCCCCCC
T ss_conf             86899999997035468777999618999999879996999980443000011130473999889789974673202698


Q ss_pred             EEEEEE
Q ss_conf             379999
Q gi|254780791|r  100 KYQIII  105 (529)
Q Consensus       100 ~~ql~v  105 (529)
                      .|.|..
T Consensus        99 ~~~i~f  104 (127)
T 1jmc_A           99 DYEMTF  104 (127)
T ss_dssp             SEEEEC
T ss_pred             CEEEEE
T ss_conf             689998


No 63 
>>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1} (A:)
Probab=87.32  E-value=1.4  Score=24.66  Aligned_cols=80  Identities=13%  Similarity=0.066  Sum_probs=49.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCE-EEEECCCCC-H----HHH--------------------HHCCHHHHHHH
Q ss_conf             111103679999999974100357677758-999516888-4----442--------------------20076999999
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDI-IILARGGGS-I----EDL--------------------WHFNDEMIVRA  235 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~-iii~RGGGS-~----eDL--------------------~~FN~e~lara  235 (529)
                      =......+|..+|+.+...        .|+ +||.+|+|. .    -|+                    +....+.+.+.
T Consensus        66 l~~~~~~~l~~~l~~~~~d--------~~v~~vvl~g~g~~~F~aG~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (407)
T 3ju1_A           66 LDLDXVRAXTVQLNLWKKD--------PLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYL  137 (407)
T ss_dssp             BCHHHHHHHHHHHHHHHHC--------TTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHC--------CCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999998629--------99259999548999736898779885133223443115799999998899887


Q ss_pred             HHHCCCEEEEEE-CCCC-CCHHHHHHHCCCCCCCHH
Q ss_conf             974890488520-5777-525898864123777214
Q gi|254780791|r  236 IANSSIPIISAI-GHET-DWTLADYAADLRAPTPTG  269 (529)
Q Consensus       236 I~~~~iPVisgI-GHE~-D~Tl~D~VAD~Ra~TPTa  269 (529)
                      |..|+.|||++| ||=. -=.-+=+.+|.|..|+++
T Consensus       138 i~~~~kP~Iaai~G~a~GgG~~lal~~d~ria~e~~  173 (407)
T 3ju1_A          138 LHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTETS  173 (407)
T ss_dssp             HHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTC
T ss_pred             HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             611584399986453455442332355545548987


No 64 
>>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} (A:)
Probab=87.29  E-value=1.3  Score=25.04  Aligned_cols=78  Identities=15%  Similarity=0.230  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC----CHHHHHH----------------CCHHHHHHHHHHCCCEEE
Q ss_conf             10367999999997410035767775899951688----8444220----------------076999999974890488
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG----SIEDLWH----------------FNDEMIVRAIANSSIPII  244 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG----S~eDL~~----------------FN~e~laraI~~~~iPVi  244 (529)
                      ....++..++..+....      .+-+|||.-|||    +=.|+..                ---..+.+.|..||.|||
T Consensus        34 ~~~~~l~~al~~~~~d~------~v~~vil~~~~~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvI  107 (289)
T 3h0u_A           34 EVVRDLVALLEELAHPT------APRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTI  107 (289)
T ss_dssp             HHHHHHHHHHHHTTSTT------SCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEE
T ss_pred             HHHHHHHHHHHHHHCCC------CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986599------956999953554320124678888763012201123566788999999999876664


Q ss_pred             EEE-CCCCC-CHHHHHHHCCCCCCCH
Q ss_conf             520-57775-2589886412377721
Q gi|254780791|r  245 SAI-GHETD-WTLADYAADLRAPTPT  268 (529)
Q Consensus       245 sgI-GHE~D-~Tl~D~VAD~Ra~TPT  268 (529)
                      .+| ||=.= =.-+=+++|.|..|+.
T Consensus       108 aai~G~a~GgG~~lalacD~ri~~~~  133 (289)
T 3h0u_A          108 AKLRGRARGAGSEFLLACDMRFASRE  133 (289)
T ss_dssp             EEECSEEETHHHHHHHHSSEEEEETT
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             11123453334421011121102441


No 65 
>>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} (A:1-160)
Probab=87.24  E-value=2.3  Score=22.76  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=48.7

Q ss_pred             CCEEEEEECCCHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             52899984784258999999-86305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQ-RISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~-~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      .+|+.|||++.-..+.|-+. .+.+-.      .-..+.++-....+.++++.+...+       +| .||+=||||.-|
T Consensus        37 ~~~~liitd~~~~~~~~~v~~~l~~~~------i~~~~~~~~~~~~v~~~~~~~~~~~-------~D-~iiaiGGGs~~D  102 (160)
T 3iv7_A           37 SAKVXVIAGEREXSIAHKVASEIEVAI------WHDEVVXHVPIEVAERARAVATDNE-------ID-LLVCVGGGSTIG  102 (160)
T ss_dssp             CSSEEEECCGGGHHHHHHHTTTSCCSE------EECCCCTTCBHHHHHHHHHHHHHTT-------CC-EEEEEESHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHCE------EECCCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEECCCCCCC
T ss_conf             975999908427769999999710018------9767427979999999999986317-------98-899934664422


Q ss_pred             HHHCCHHHHHHHHHH
Q ss_conf             220076999999974
Q gi|254780791|r  224 LWHFNDEMIVRAIAN  238 (529)
Q Consensus       224 L~~FN~e~laraI~~  238 (529)
                      .        |++++.
T Consensus       103 ~--------aK~~A~  109 (160)
T 3iv7_A          103 L--------AKAIAX  109 (160)
T ss_dssp             H--------HHHHHH
T ss_pred             H--------HHHHHH
T ss_conf             6--------667553


No 66 
>>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* (A:1-173)
Probab=87.08  E-value=2.4  Score=22.69  Aligned_cols=94  Identities=16%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             CCCC-CCEEEEEECCCH--HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             1026-528999847842--5899999986305975899972100111103679999999974100357677758999516
Q gi|254780791|r  141 IPFI-PKIIAVITSPTG--AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       141 lP~~-p~~i~vits~~~--a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      +..+ .+|+.|||.+..  .+..+++..+.........+|.-.. .+-....+-++++.+...+.    .+.| .||+=|
T Consensus        29 l~~~g~k~~livt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~d-~iiavG  102 (173)
T 2gru_A           29 IPRDEFDQYIMISDSGVPDSIVHYAAEYFGKLAPVHILRFQGGE-EYKTLSTVTNLQERAIALGA----NRRT-AIVAVG  102 (173)
T ss_dssp             SCTTSCSEEEEEEETTSCHHHHHHHHHHHTTTSCEEEEEECCSG-GGCSHHHHHHHHHHHHHTTC----CTTE-EEEEEE
T ss_pred             HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCHHHHHHHHHHHHHHHH----CCCC-CEEEEC
T ss_conf             87438997999989956899999999998615975999956986-66879889999877665432----2344-036634


Q ss_pred             CCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             8884442200769999999748904885
Q gi|254780791|r  218 GGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       218 GGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      |||.-|+.-     .+......++|.|+
T Consensus       103 GGs~~D~ak-----~~a~~~~~~~p~i~  125 (173)
T 2gru_A          103 GGLTGNVAG-----VAAGMMFRGIALIH  125 (173)
T ss_dssp             SHHHHHHHH-----HHHHHBTTCCEEEE
T ss_pred             CHHHHHHHH-----HHHHHHHCCCCEEE
T ss_conf             267777899-----99988714642466


No 67 
>>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} (A:1-207)
Probab=87.08  E-value=2.3  Score=22.75  Aligned_cols=78  Identities=21%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HH-------------HHHCCHHHHHHHHHHCCCEEEEEE-
Q ss_conf             036799999999741003576777589995168884----44-------------220076999999974890488520-
Q gi|254780791|r  186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----ED-------------LWHFNDEMIVRAIANSSIPIISAI-  247 (529)
Q Consensus       186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eD-------------L~~FN~e~laraI~~~~iPVisgI-  247 (529)
                      -..++..+++.+....      .+-+|||.-||+-.    -|             -+......+.+.+..||.|||++| 
T Consensus        36 ~~~~l~~~~~~~~~d~------~v~~vvi~~~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIa~v~  109 (207)
T 2ppy_A           36 FYKEFNAAIDDIRFDP------DIKVVIVXSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE  109 (207)
T ss_dssp             HHHHHHHHHHHHHTCT------TCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHCC------CCCEEEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             9999999999997597------8632332134433211221110011211011122444311111001357742111100


Q ss_pred             CCCCCCH-HHHHHHCCCCCCCHH
Q ss_conf             5777525-898864123777214
Q gi|254780791|r  248 GHETDWT-LADYAADLRAPTPTG  269 (529)
Q Consensus       248 GHE~D~T-l~D~VAD~Ra~TPTa  269 (529)
                      ||=.--- -.=+.+|.|..++.+
T Consensus       110 G~a~ggG~~l~~~~D~~i~~~~~  132 (207)
T 2ppy_A          110 GHTVGGGLEXALACDLRFXGDEA  132 (207)
T ss_dssp             SEEETHHHHHHHTSSEEEEETTC
T ss_pred             CCCCCCCCCCCCCCCEEEEECCC
T ss_conf             11335541013343058984152


No 68 
>>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} (A:)
Probab=87.07  E-value=1.8  Score=23.73  Aligned_cols=79  Identities=15%  Similarity=0.068  Sum_probs=50.3

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHH-------------C--CHHHHHHHHHHCCCEE
Q ss_conf             111036799999999741003576777589995168884----44220-------------0--7699999997489048
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWH-------------F--NDEMIVRAIANSSIPI  243 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~-------------F--N~e~laraI~~~~iPV  243 (529)
                      ......++..++..++..        .+.+||++|+|..    .|+..             |  ....+..+++.||.||
T Consensus        32 ~~~~~~el~~~~~~~~~d--------~~~~vvi~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~  103 (267)
T 3hp0_A           32 NDTLIEECLQVLNQCETS--------TVTVVVLEGLPEVFCFGADFQEIYQEXKRGRKQASSQEPLYDLWXKLQTGPYVT  103 (267)
T ss_dssp             CSHHHHHHHHHHHHHHHS--------SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEE
T ss_pred             CHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             999999999999997479--------964999977998746788600152000012456655168999999997389878


Q ss_pred             EEEE-CCCC-CCHHHHHHHCCCCCCCHH
Q ss_conf             8520-5777-525898864123777214
Q gi|254780791|r  244 ISAI-GHET-DWTLADYAADLRAPTPTG  269 (529)
Q Consensus       244 isgI-GHE~-D~Tl~D~VAD~Ra~TPTa  269 (529)
                      |.+| ||=. -=.-.=+.+|.|..|+++
T Consensus       104 Iaav~G~a~GgG~~lalacD~ria~~~a  131 (267)
T 3hp0_A          104 ISHVRGKVNAGGLGFVSATDIAIADQTA  131 (267)
T ss_dssp             EEEECSEEETTHHHHHHHSSEEEECTTC
T ss_pred             EEEEEEEEEECCCHHHHHCCCCCCCCCC
T ss_conf             9996006750320443411302235542


No 69 
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349)
Probab=87.01  E-value=2.4  Score=22.66  Aligned_cols=124  Identities=16%  Similarity=0.129  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             9999999976540122610016310-265289998478-42589999998630---597589997210011110367999
Q gi|254780791|r  118 TALEKRKKKLLEEGLFSDQHKNPIP-FIPKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIAN  192 (529)
Q Consensus       118 ~~~e~lk~~L~~eGlfd~~~k~~lP-~~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~  192 (529)
                      ...|++.+-.++-||--....+.+. .....||+|++. +.-.+.+|+.-+.+   ..++++.++++.-...+...+.  
T Consensus        33 ~TrerV~~aa~eLGY~pn~~ar~L~~~~s~~Igvi~~~~~n~f~~~ii~gi~~~a~~~Gy~l~i~~~~~~~~e~~~~~--  110 (219)
T 1jye_A           33 KTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTA--  110 (219)
T ss_dssp             -----------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH--
T ss_conf             999999999999889879888875117762899994477662267887766666765077024412343227999999--


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC---CCCCCHHHHHH
Q ss_conf             99999741003576777589995168884442200769999999748904885205---77752589886
Q gi|254780791|r  193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG---HETDWTLADYA  259 (529)
Q Consensus       193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG---HE~D~Tl~D~V  259 (529)
                       ++.+-..       ++|.||+.=.+        .+++.+........+|||.-=.   +..|...+||-
T Consensus       111 -ie~l~~~-------~vdGIIi~~~~--------~~~~~~~~~l~~~~iPvV~iD~~~~~~~~sV~~D~~  164 (219)
T 1jye_A          111 -VHNLLAQ-------RVSGLIINYPL--------DDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSFR  164 (219)
T ss_dssp             -HHHHHTT-------TCSCEEEESCC--------CHHHHHHHHHHTTTSCEEESSSCTTSSSCEEEECHH
T ss_pred             -HHHHHHC-------CCCCCCCCCCC--------CCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECHH
T ss_conf             -9999963-------77763013664--------302567999850589668851467888874663199


No 70 
>>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} (A:1-219)
Probab=86.88  E-value=0.76  Score=27.10  Aligned_cols=89  Identities=20%  Similarity=0.205  Sum_probs=55.5

Q ss_pred             CCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             2652899984784258--99999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  143 FIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       143 ~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      .-.+++.|||.+..+-  ...+...+..+. +.++   .-|-++.....+.+++..+...       ++| .||+=||||
T Consensus        89 ~~~~~~~ivtd~~~~~~~~~~i~~~l~~~~-~~v~---~~v~~~~~~~~v~~~~~~~~~~-------~~d-~iIaiGGGs  156 (219)
T 1ta9_A           89 WATKSAVVLADQNVWNICANKIVDSLSQNG-MTVT---KLVFGGEASLVELDKLRKQCPD-------DTQ-VIIGVGGGK  156 (219)
T ss_dssp             TCSSEEEEEEEHHHHHHTHHHHHHHHHHTT-CEEE---EEEECSCCCHHHHHHHHTTSCT-------TCC-EEEEEESHH
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHCC-CEEE---EEEECCCCCHHHHHHHHHHHHC-------CCC-EEEEECCCH
T ss_conf             299969999896688999999999998769-9799---9983899899999999997513-------899-899957953


Q ss_pred             HHHHHHCCHHHHHHHHHHCC------CEEEEEECCCC
Q ss_conf             44422007699999997489------04885205777
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSS------IPIISAIGHET  251 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~------iPVisgIGHE~  251 (529)
                      .-|+        |++++-..      ||..+|.|=|.
T Consensus       157 v~D~--------aK~~a~~~~~p~i~iPTta~t~sev  185 (219)
T 1ta9_A          157 TMDS--------AKYIAHSMNLPSIICPTTASSDAAT  185 (219)
T ss_dssp             HHHH--------HHHHHHHTTCCEEEEESSCSCSCTT
T ss_pred             HHHH--------HHCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             7652--------1012245552035541234455455


No 71 
>>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, nucleus, zinc, zinc-finger; 2.30A {Xenopus laevis} PDB: 3h15_A (A:1-149)
Probab=86.78  E-value=0.57  Score=28.26  Aligned_cols=75  Identities=9%  Similarity=-0.021  Sum_probs=54.8

Q ss_pred             CEEEEEEECCCCCC-CCCC--EEEEEEECCC---CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE
Q ss_conf             18999997054356-8886--2799987489---4799999735210586681459889999996675288437999997
Q gi|254780791|r   34 HVCVRGEISGYRGI-HSSG--HAYFSLKDNH---SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIES  107 (529)
Q Consensus        34 ~~~v~gEis~~~~~-~~sG--H~Yf~lkd~~---a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~  107 (529)
                      .+.|-|=|++.+.. .++|  -.+++|-|..   +.+.|++|...+.+..-.++.|.-+++.|++...  +++.++++..
T Consensus        58 ~v~v~giv~~~~~~~tk~g~~~a~~~l~D~~g~~~~ie~~iF~~~~~~~~~~l~~~~~~~i~g~v~~~--~~~~~~~~~~  135 (149)
T 3ebe_A           58 WVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKP--KEGTDEVCLS  135 (149)
T ss_dssp             EEEEEEEEEEECC-------CCEEEEEECSSSTTCCEEEEECHHHHHHHTTCCTTEEEEEESCEECCC--CTTCCCEEEE
T ss_pred             EEEEEEEEECCCCEECCCCCCEEEEEEECCCCCCEEEEEEEECHHHHHHCCCCCCEEEEEECCCCCCC--CCCCCCEEEE
T ss_conf             89999999657712736898479999760678860899999566878650758842999989901778--8998725899


Q ss_pred             EEE
Q ss_conf             101
Q gi|254780791|r  108 LIP  110 (529)
Q Consensus       108 i~~  110 (529)
                      |..
T Consensus       136 v~~  138 (149)
T 3ebe_A          136 VDN  138 (149)
T ss_dssp             CSS
T ss_pred             ECC
T ss_conf             768


No 72 
>>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A (A:1-200)
Probab=86.46  E-value=2.5  Score=22.52  Aligned_cols=80  Identities=18%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC---------------HHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             11103679999999974100357677758999516888---------------444220076999999974890488520
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS---------------IEDLWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS---------------~eDL~~FN~e~laraI~~~~iPVisgI  247 (529)
                      ......++..++..+....+      + .+||.+|+|.               ..+-+.+.-..+.+++..||.|+|++|
T Consensus        30 ~~~~~~~l~~~l~~~~~d~~------~-~vvil~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Ia~v  102 (200)
T 2pbp_A           30 SRQMVAEIVAAVEAFDRNEK------V-RVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAV  102 (200)
T ss_dssp             CHHHHHHHHHHHHHHHHCTT------C-CEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHCCC------C-EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99999999999999860998------0-3888515543222102577763000245777776656665214799789999


Q ss_pred             -CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             -57775-25898864123777214
Q gi|254780791|r  248 -GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       248 -GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                       ||-.- =...=+.+|.|..++.+
T Consensus       103 ~G~a~G~G~~lala~D~~ia~~~a  126 (200)
T 2pbp_A          103 NGLALGGGFELALSCDLIVASSAA  126 (200)
T ss_dssp             CSEEETHHHHHHHTSSEEEEETTC
T ss_pred             ECEEEEHHHHHHHCCCEEEECCCC
T ss_conf             265860778998515779985997


No 73 
>>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A (A:1-48,A:423-534)
Probab=86.40  E-value=2.6  Score=22.42  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHH------CC--CCEEEEE-EECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCC-
Q ss_conf             2299999999999740------01--7189999-970543568886279998748947999997352105866814598-
Q gi|254780791|r   15 YSVSELSYHLKHIVES------NL--SHVCVRG-EISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGI-   84 (529)
Q Consensus        15 ~svs~l~~~i~~~l~~------~~--~~~~v~g-Eis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~-   84 (529)
                      ++.++++..+=..|+.      .+  +.+++++ .|.+++. -..+|+=|+|++    ++|+.|...-.      ..|. 
T Consensus        60 L~~~~i~~eli~~L~~LePFG~GNpePiF~~~~v~I~~~r~-iGk~Hlkl~L~~----~~aI~Fn~~~~------~~~~~  128 (160)
T 2zxr_A           60 LPEPGLLPQVFRELALLEPYGEGNPEPLFLLFGAPEEARRL-GEGRHLAFRLKG----VRVLAWKQGDL------ALPPE  128 (160)
T ss_dssp             CCCGGGHHHHHHHHGGGCSCSSSSCCCCEEEEECCEEEEES-SSSSEEEEEETT----EEEEEECCSSC------SCCSS
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEE-CCCCEEEEEEEC----CCEEEECCCCC------CCCCE
T ss_conf             47241139999999961977899998679734858998896-278479999867----99899889865------67987


Q ss_pred             -EEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf             -8999999667528843799999710168
Q gi|254780791|r   85 -EFLVIGKITTFPGSSKYQIIIESLIPSG  112 (529)
Q Consensus        85 -~v~~~g~~~~y~~~g~~ql~v~~i~~~g  112 (529)
                       .|+.+-.++.|..+-++|+.|.++.+++
T Consensus       129 idiv~~l~~N~yrG~~s~Ql~I~Dir~a~  157 (160)
T 2zxr_A          129 VEVAGLLSENAWNGHLAYEVQAVDLRKPE  157 (160)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEESCC
T ss_pred             EEEEEEEEEEEECCEEEEEEEEEECCCCC
T ss_conf             99999971786699745999999805743


No 74 
>>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} (A:)
Probab=86.30  E-value=2.6  Score=22.37  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=38.2

Q ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEE-EECCCCEEEEEEEE
Q ss_conf             7999874894799999735210586681459889999-9966-75288437999997
Q gi|254780791|r   53 AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKIT-TFPGSSKYQIIIES  107 (529)
Q Consensus        53 ~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~-~y~~~g~~ql~v~~  107 (529)
                      ..++|-|+.+.|++++|...+.... .++.|+-|++. |+++ .|  +|+++|.+..
T Consensus        45 ~~~~i~D~Tg~i~~~lw~~~~~~~~-~l~~gd~v~i~~~~v~~~~--~g~~~L~~~~   98 (115)
T 2k50_A           45 ANVIIADDTGELRAVFWTENIKLLK-KFREGDVIRIKDVNIRGGF--GGRKEAHLMP   98 (115)
T ss_dssp             EEEEEEETTEEEEEEEETTGGGGGG-TCCTTSEEEEEEEEECCCS--SSSCEEEECT
T ss_pred             EEEEEECCCCEEEEEEECCHHHHHC-CCCCCCEEEEEEEEEECCC--CCCEEEEECC
T ss_conf             9999976998799999863157643-7999999999634990022--9969999899


No 75 
>>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} (A:)
Probab=86.25  E-value=2.3  Score=22.80  Aligned_cols=80  Identities=15%  Similarity=0.074  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----------------HH--HHHCCHHHHHHHHHHCCCEEE
Q ss_conf             111036799999999741003576777589995168884----------------44--220076999999974890488
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----------------ED--LWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----------------eD--L~~FN~e~laraI~~~~iPVi  244 (529)
                      ....-.++..+|..+....+      +. +||++|.|..                ++  -|......+..+++.||.|||
T Consensus        29 ~~~~~~~l~~~l~~~~~d~~------~~-~vii~g~g~~ffsggd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkP~I  101 (260)
T 1sg4_A           29 SLEFLTELVISLEKLENDKS------FR-GVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLV  101 (260)
T ss_dssp             CHHHHHHHHHHHHHHHHCTT------CC-EEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEE
T ss_pred             CHHHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             99999999999999973999------56-999965765322035453322121221100011035778776304774322


Q ss_pred             EEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             520-577752-5898864123777214
Q gi|254780791|r  245 SAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       245 sgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      ++| ||=.=- ...=+.+|.|..|+.+
T Consensus       102 aav~G~a~GgG~~la~~~D~~ia~~~a  128 (260)
T 1sg4_A          102 SAINGACPAGGCLVALTCDYRILADNP  128 (260)
T ss_dssp             EEECEEBCHHHHHHHTTSSEEEEECCT
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             210113433333321100044541112


No 76 
>>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A (A:)
Probab=86.11  E-value=1.4  Score=24.69  Aligned_cols=118  Identities=13%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             HHHHHHHHCCCCCCCCCCC--CCCCEEEEEECCCH--HHHHHHHHHHHHCCC-EEEE-EEECCCCCCCHHHHHHHHHHHH
Q ss_conf             9976540122610016310--26528999847842--589999998630597-5899-9721001111036799999999
Q gi|254780791|r  124 KKKLLEEGLFSDQHKNPIP--FIPKIIAVITSPTG--AVIRDILQRISCRFP-LRVI-IFPVKVQGDECPKEIANAILQL  197 (529)
Q Consensus       124 k~~L~~eGlfd~~~k~~lP--~~p~~i~vits~~~--a~~~D~~~~~~~r~p-~~~~-~~p~~vQG~~a~~~i~~ai~~~  197 (529)
                      ++.|+.||.+-....++.+  .=|.+|+|+--..+  .-..++++.+..+.. +... .+...+.-......++..   .
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~~r~~~i~iid~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~   88 (301)
T 2vdj_A           12 RKVLQEENIFVMTKERAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTS---F   88 (301)
T ss_dssp             -----CCSCCCCCCCCCCCTTSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------C---C
T ss_pred             HHHHHHCCCEEECHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHH---H
T ss_conf             7899868977757545233666332136550789717899999998567766458898772555389987899999---8


Q ss_pred             HHHCCCCCCCCCCEEEEECCCCCHHHH----HHCCHHHHHHHHHHCCCEEE
Q ss_conf             741003576777589995168884442----20076999999974890488
Q gi|254780791|r  198 NTLKEGRTCPRPDIIILARGGGSIEDL----WHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       198 ~~~~~~~~~~~~D~iii~RGGGS~eDL----~~FN~e~laraI~~~~iPVi  244 (529)
                      ....+......+|.|||.=|.|+..|.    |.=....+++.+.+-.+||+
T Consensus        89 ~~~~~~~~~~~~DgiIi~Gg~~~~~~~~~~~~~~~~~~li~~~~~~~~Pil  139 (301)
T 2vdj_A           89 YKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTL  139 (301)
T ss_dssp             EECHHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCEE
T ss_conf             784998632545479971897677666651159999999999997278817


No 77 
>>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:)
Probab=85.86  E-value=2.6  Score=22.34  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=57.1

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH-
Q ss_conf             2899984784258999999863059758999721001111036799999999741003576777589995168884442-
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL-  224 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL-  224 (529)
                      ++|+||-...+-.++.|.+.+.+.. .++.++|... +...+.                ....+|.|||.=|+++..|- 
T Consensus         4 ~~iliid~~~~~~~~~~~~~l~~~g-~~~~~~~~~~-~~~~~~----------------~~~~~DgiIi~GGp~~~~~~~   65 (250)
T 3l83_A            4 KPVMIIQFSASEGPGHFGDFLAGEH-IPFQVLRMDR-SDPLPA----------------EIRDCSGLAMMGGPMSANDDL   65 (250)
T ss_dssp             -CEEEEECSSSCCCTHHHHHHHHTT-CCEEEEEGGG-TCCCCS----------------CGGGSSEEEECCCSSCTTSCC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHCC-CEEEEEECCC-CCCCCC----------------CHHHCCEEEEECCCCCCCCCC
T ss_conf             6499996789998059999998489-8799997899-987877----------------864599999909999777878


Q ss_pred             -HHCCHHHHHHHHHHCCCEEE
Q ss_conf             -20076999999974890488
Q gi|254780791|r  225 -WHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       225 -~~FN~e~laraI~~~~iPVi  244 (529)
                       |.-+...+.+..++..+||+
T Consensus        66 ~~~~~~~~li~~~~~~~~PvL   86 (250)
T 3l83_A           66 PWMPTLLALIRDAVAQRVPVI   86 (250)
T ss_dssp             TTHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHHHHHCCCCEE
T ss_conf             668999999999998699889


No 78 
>>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} (A:1-183)
Probab=85.76  E-value=2.7  Score=22.17  Aligned_cols=71  Identities=18%  Similarity=0.212  Sum_probs=47.9

Q ss_pred             CCEEEEEECCCHH---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             5289998478425---8999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  145 PKIIAVITSPTGA---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       145 p~~i~vits~~~a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      .+++.|||+++..   ....++..+.... +.+.+| .-+.++.....+-++++.+...+       +| .||+=||||.
T Consensus        31 ~~~~livt~~~~~~~~~~~~i~~~l~~~~-i~~~~~-~~~~~~~t~~~v~~~~~~~~~~~-------~D-~iiaiGGGsv  100 (183)
T 1rrm_A           31 YQKALIVTDKTLVQCGVVAKVTDKXDAAG-LAWAIY-DGVVPNPTITVVKEGLGVFQNSG-------AD-YLIAIGGGSP  100 (183)
T ss_dssp             CCEEEEECBHHHHHTTHHHHHHHHHHHTT-CEEEEE-CBCCSSCBHHHHHHHHHHHHHHT-------CS-EEEEEESHHH
T ss_pred             CCEEEEEECCCHHHCCHHHHHHHHHHHCC-CEEEEE-CCCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCCCC
T ss_conf             98799998977565827999999998759-839998-78479979999999865550358-------88-7997688641


Q ss_pred             HHHH
Q ss_conf             4422
Q gi|254780791|r  222 EDLW  225 (529)
Q Consensus       222 eDL~  225 (529)
                      -|..
T Consensus       101 ~D~a  104 (183)
T 1rrm_A          101 QDTC  104 (183)
T ss_dssp             HHHH
T ss_pred             CHHH
T ss_conf             0489


No 79 
>>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} (A:1-198)
Probab=85.69  E-value=2.7  Score=22.14  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH------HH-------------HHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             1036799999999741003576777589995168884------44-------------2200769999999748904885
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI------ED-------------LWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~------eD-------------L~~FN~e~laraI~~~~iPVis  245 (529)
                      .-..++.+++..+....+      +-+|||.=+|..+      .+             -|..+-..+.+++..||.|+|+
T Consensus        26 ~~~~~l~~~l~~~~~d~~------~~vvil~g~~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia   99 (198)
T 1uiy_A           26 EXALSLLQALDDLEADPG------VRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVA   99 (198)
T ss_dssp             HHHHHHHHHHHHHHHCTT------CCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999999999999973999------64999966543322111044432012100034444322100267799858988899


Q ss_pred             EE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             20-577752-5898864123777214
Q gi|254780791|r  246 AI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       246 gI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      +| ||=.-. .-.=+.+|.|..++++
T Consensus       100 ~i~G~a~G~G~~l~l~~D~~ia~~~a  125 (198)
T 1uiy_A          100 AVNGPAVAGGAGLALACDLVVXDEEA  125 (198)
T ss_dssp             EECSCEETHHHHHHHTSSEEEEETTC
T ss_pred             EECCEEEEHHHHHHHHHHHHHHHHHH
T ss_conf             98686741335877603265554555


No 80 
>>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} (A:1-246,A:510-556)
Probab=85.60  E-value=2.8  Score=22.11  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHHHHC---------------CHH--HHHHHHHHCCCE
Q ss_conf             110367999999997410035767775899951688-84---442200---------------769--999999748904
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDLWHF---------------NDE--MIVRAIANSSIP  242 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL~~F---------------N~e--~laraI~~~~iP  242 (529)
                      ..-..+|.+|++.+....     +.+.++||..+.| .+   -||-.|               .+.  .+.+.|..||+|
T Consensus        57 ~~~~~~l~~al~~~~~~~-----~~~~~lVi~~~~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P  131 (293)
T 2w3p_A           57 LGVDIELHDAIQRIRFEH-----PEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLK  131 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----TTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHHHHHHHCC-----CCEEEEEEEECCCCEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999997169-----985999997089980643848886742574014568999999988888887607998


Q ss_pred             EEEEE-CCCCCC-HHHHHHHCCC
Q ss_conf             88520-577752-5898864123
Q gi|254780791|r  243 IISAI-GHETDW-TLADYAADLR  263 (529)
Q Consensus       243 VisgI-GHE~D~-Tl~D~VAD~R  263 (529)
                      ||++| ||-.=- .-.-+.+|.|
T Consensus       132 vVAai~G~a~GgG~~lala~D~~  154 (293)
T 2w3p_A          132 FLAAVNGACAGGGYELALACDEI  154 (293)
T ss_dssp             EEEEECSEEETHHHHHHHHSSEE
T ss_pred             EEEEEECCCCCCCHHHHHHCCCH
T ss_conf             89998151035414666522301


No 81 
>>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=84.65  E-value=3  Score=21.77  Aligned_cols=96  Identities=11%  Similarity=0.073  Sum_probs=68.2

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             99765401226100163102652899984784258999999863059758999721001111036799999999741003
Q gi|254780791|r  124 KKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEG  203 (529)
Q Consensus       124 k~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~  203 (529)
                      ..+|-+|=..+.+.+.+.|.-..+|+||.-  +..+.|+++-+.+.. +++.++|..-                      
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~~~~I~vid~--~~~~~~~~~~l~~~G-~~~~~~~~~~----------------------   56 (219)
T 1q7r_A            2 HHHHHHSSGVDLGTENLYFQSNXKIGVLGL--QGAVREHVRAIEACG-AEAVIVKKSE----------------------   56 (219)
T ss_dssp             ----------------CCCCCCCEEEEESC--GGGCHHHHHHHHHTT-CEEEEECSGG----------------------
T ss_pred             CCCCCCCCCCCCCCCCCHHCCCCEEEEEEC--CCCHHHHHHHHHHCC-CCEEEECCHH----------------------
T ss_conf             754455456322454100015977999963--884999999999879-9699989989----------------------


Q ss_pred             CCCCCCCEEEEECCCCCHHH--HHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             57677758999516888444--2200769999999748904885
Q gi|254780791|r  204 RTCPRPDIIILARGGGSIED--LWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       204 ~~~~~~D~iii~RGGGS~eD--L~~FN~e~laraI~~~~iPVis  245 (529)
                       ....+|.|||.=|-++..|  .|.-+.-.+++...+..+||+-
T Consensus        57 -~l~~~Dgvil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG   99 (219)
T 1q7r_A           57 -QLEGLDGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFG   99 (219)
T ss_dssp             -GGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEE
T ss_pred             -HHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf             -9826999998999879999885457709999987546997899


No 82 
>>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, structural genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} (A:)
Probab=84.63  E-value=3  Score=21.77  Aligned_cols=81  Identities=17%  Similarity=0.124  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHC---------------C--HHHHHHHHHHCCC
Q ss_conf             1111036799999999741003576777589995168884---442200---------------7--6999999974890
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHF---------------N--DEMIVRAIANSSI  241 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~F---------------N--~e~laraI~~~~i  241 (529)
                      -......++.++++.++...       ..+|||.-+|+++   -||..|               .  -..+..+|..||.
T Consensus        50 l~~~~~~~l~~al~~~~~~~-------~~~vii~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pk  122 (280)
T 2f6q_A           50 INTEXYHEIXRALKAASKDD-------SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPK  122 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS-------CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHHHHHHHHCCC-------CCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             89999999999999986398-------65799970475333453213320343333321110013567777665423578


Q ss_pred             EEEEEEC-CCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             4885205-7775-25898864123777214
Q gi|254780791|r  242 PIISAIG-HETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       242 PVisgIG-HE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      |||.+|. |=.- =...=+.+|+|..++.+
T Consensus       123 p~Iaav~G~a~GgG~~lalacD~ria~~~a  152 (280)
T 2f6q_A          123 PLIAVVNGPAVGISVTLLGLFDAVYASDRA  152 (280)
T ss_dssp             CEEEEECSCEETHHHHGGGGCSEEEEETTC
T ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             649998794234565420010244252085


No 83 
>>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} (A:)
Probab=84.23  E-value=3.1  Score=21.63  Aligned_cols=66  Identities=17%  Similarity=0.235  Sum_probs=44.2

Q ss_pred             CCCEEEEEEECCCCC--CCCCC---EE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEE
Q ss_conf             171899999705435--68886---27-9998748947999997352105866814598899999-96675288437999
Q gi|254780791|r   32 LSHVCVRGEISGYRG--IHSSG---HA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQII  104 (529)
Q Consensus        32 ~~~~~v~gEis~~~~--~~~sG---H~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~  104 (529)
                      ...|-|.|.|.++..  ..++|   +. .+.|.|+.+.|+.++|.-       ..+.|+-|.+.+ +++-|  +|.++|.
T Consensus        13 ~~~v~v~g~V~~v~~~~~~~~g~~~~~~~~~i~D~Tg~I~~tlW~~-------~~~~Gdvv~i~~~~v~~~--~G~~~l~   83 (106)
T 2k75_A           13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------QLQDSDVVRIDNARVAQF--NGYLSLS   83 (106)
T ss_dssp             CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------CCCTTEEEEEEEEEEEEE--TTEEEEE
T ss_pred             CCCEEEEEEEEEECCCEEEECCCEEEEEEEEEECCCCEEEEEEECC-------CCCCCCEEEEEEEEEEEE--CCEEEEE
T ss_conf             9828999999496267798689868999999987997899999599-------878998999901899788--9979999


Q ss_pred             EE
Q ss_conf             99
Q gi|254780791|r  105 IE  106 (529)
Q Consensus       105 v~  106 (529)
                      +.
T Consensus        84 ~~   85 (106)
T 2k75_A           84 VG   85 (106)
T ss_dssp             EC
T ss_pred             EC
T ss_conf             89


No 84 
>>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} (A:281-550)
Probab=83.72  E-value=3.3  Score=21.47  Aligned_cols=87  Identities=9%  Similarity=0.042  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC------------------CCCCCCCEEEEE
Q ss_conf             42589999998630597-58999721001111036799999999741003------------------576777589995
Q gi|254780791|r  155 TGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEG------------------RTCPRPDIIILA  215 (529)
Q Consensus       155 ~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~------------------~~~~~~D~iii~  215 (529)
                      +-.-+.++...+..--. -.|-+.+..+.|.++..+++.||...-.....                  .....+|.||+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~p~Igiv~~~~~~~~n~~s~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgivl~   82 (270)
T 1vco_A            3 NLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVP   82 (270)
T ss_dssp             CCHHHHHHHHHHHSCSEEEEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEEC
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEC
T ss_conf             75899999999858676447987404555579999998899887774396258997133122015688876337817832


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf             16888444220076999999974890488
Q gi|254780791|r  216 RGGGSIEDLWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       216 RGGGS~eDL~~FN~e~laraI~~~~iPVi  244 (529)
                      -|+|+..|.   .....++.+.+..+||+
T Consensus        83 ggp~~~~~~---~~~~~i~~~~~~~~PiL  108 (270)
T 1vco_A           83 GGFGVRGIE---GKVRAAQYARERKIPYL  108 (270)
T ss_dssp             CCCSSTTHH---HHHHHHHHHHHTTCCEE
T ss_pred             CCCCCCCCH---HHHHHHHHHHHCCCHHH
T ss_conf             667767606---89999998987471288


No 85 
>>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} (A:1-142)
Probab=83.53  E-value=3.3  Score=21.41  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=53.9

Q ss_pred             CCCCCC---EEEEEECCCHHHH--HH-HHHHHH--HCCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             102652---8999847842589--99-999863--05975899972100111----103679999999974100357677
Q gi|254780791|r  141 IPFIPK---IIAVITSPTGAVI--RD-ILQRIS--CRFPLRVIIFPVKVQGD----ECPKEIANAILQLNTLKEGRTCPR  208 (529)
Q Consensus       141 lP~~p~---~i~vits~~~a~~--~D-~~~~~~--~r~p~~~~~~p~~vQG~----~a~~~i~~ai~~~~~~~~~~~~~~  208 (529)
                      .|...+   +|+||+..++.-.  ++ |-+-++  +.+++++.+-|..-...    +...+=++.|..+-      ..+.
T Consensus         6 ~P~~Lk~Gd~I~viapSs~~~~~~~~~~~~~i~~l~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~------~d~~   79 (142)
T 3gjz_A            6 LPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALI------RNPN   79 (142)
T ss_dssp             CCCCCCTTCEEEEECSSCCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHH------TCTT
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH------HCCC
T ss_conf             8999888599999969986655599999999999985898998665314345645799999999999863------1568


Q ss_pred             CCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf             758999516888444220076999999
Q gi|254780791|r  209 PDIIILARGGGSIEDLWHFNDEMIVRA  235 (529)
Q Consensus       209 ~D~iii~RGGGS~eDL~~FN~e~lara  235 (529)
                      +|+|+-+|||-..--|-.+=|+++.++
T Consensus        80 i~~I~~~rGGyg~~riL~~ld~~~i~~  106 (142)
T 3gjz_A           80 VSCIXSTIGGXNSNSLLPYIDYDAFQN  106 (142)
T ss_dssp             EEEEEESCCCSCGGGGGGGCCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHCCCCHHHHHC
T ss_conf             899998966789987501345445500


No 86 
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:1-100,A:232-251)
Probab=83.42  E-value=3.3  Score=21.38  Aligned_cols=80  Identities=15%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      ..||||.+. +..-+..|++-+.+   ++++.+.++++.    +.+....+.++.+...       ++|.||++      
T Consensus         9 ~~Igvi~p~~~~~f~~~i~~gi~~aa~~~gy~v~i~~~~----~d~~~~~~~i~~l~~~-------~vDGIIi~------   71 (120)
T 3e61_A            9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD----NDIKKAQGYLATFVSH-------NCTGMIST------   71 (120)
T ss_dssp             -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT----TCHHHHHHHHHHHHHT-------TCSEEEEC------
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCCEEEC------
T ss_conf             989999299967899999999999999869999999689----9989999999999844-------66422531------


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             4422007699999997489048852
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                          +.+.........+..||||.-
T Consensus        72 ----~~~~~~~~~~~~~~~iPvV~i   92 (120)
T 3e61_A           72 ----AFNENIIENTLTDHHIPFVFI   92 (120)
T ss_dssp             ----GGGHHHHHHHHHHC-CCEEEG
T ss_pred             ----CCCHHHHHHHHHHCCCCEEEE
T ss_conf             ----431155787764037530355


No 87 
>>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} (A:)
Probab=83.24  E-value=3.4  Score=21.32  Aligned_cols=80  Identities=16%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHC--------------CHHHHHHHHHHCCCEEEEE
Q ss_conf             1036799999999741003576777589995168884----442200--------------7699999997489048852
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHF--------------NDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~F--------------N~e~laraI~~~~iPVisg  246 (529)
                      ....++..++..++...      .+-+||+.-+||..    -|++.+              ....+..++..||.|||++
T Consensus        27 ~~~~~l~~al~~~~~d~------~v~~vvi~~~~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa  100 (250)
T 2a7k_A           27 TLETSVKDALARANADD------SVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA  100 (250)
T ss_dssp             HHHHHHHHHHHHHHHCT------TCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             HHHHHHHHHHHHHHHCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             99999999999997399------933999974145333223343322233323331012333211233310122223432


Q ss_pred             E-CCCCC-CHHHHHHHCCCCCCCHHH
Q ss_conf             0-57775-258988641237772145
Q gi|254780791|r  247 I-GHETD-WTLADYAADLRAPTPTGA  270 (529)
Q Consensus       247 I-GHE~D-~Tl~D~VAD~Ra~TPTaA  270 (529)
                      | ||=.= =.-.=+.+|.|..|+++-
T Consensus       101 v~G~a~GgG~~lal~~D~ria~~~a~  126 (250)
T 2a7k_A          101 VDGYAIGMGFQFALMFDQRLMASTAN  126 (250)
T ss_dssp             ECSEEETHHHHHHTTSSEEEEETTCE
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             02345454324101243121123342


No 88 
>>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} (A:1-118)
Probab=83.13  E-value=3.4  Score=21.29  Aligned_cols=83  Identities=10%  Similarity=-0.042  Sum_probs=52.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             28999847842589999998630--5975899972100111----10367999999997410035767775899951688
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISC--RFPLRVIIFPVKVQGD----ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~--r~p~~~~~~p~~vQG~----~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      .+|+||++.++..-.++-..++.  .|++++.+.+..-.+.    +...+=++-|..+-.      .+.+|+|+-+|||=
T Consensus        18 d~V~iiapSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dl~~a~~------d~~v~aI~~~rGGy   91 (118)
T 1zl0_A           18 GRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFD------MPDITAVWCLRGGY   91 (118)
T ss_dssp             SEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHH------STTEEEEEESCCSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHHHH------CCCCCEEEECCCHH
T ss_conf             999999489878999999999999968999986766100157657999999999986511------67888899885788


Q ss_pred             CHHHHHHCCHHHHHH
Q ss_conf             844422007699999
Q gi|254780791|r  220 SIEDLWHFNDEMIVR  234 (529)
Q Consensus       220 S~eDL~~FN~e~lar  234 (529)
                      ..-.|-.+=|..+.+
T Consensus        92 ga~rlL~~Ld~~~i~  106 (118)
T 1zl0_A           92 GCGQLLPGLDWGRLQ  106 (118)
T ss_dssp             CGGGGTTTCCHHHHH
T ss_pred             HHHHHHCCCCHHHHH
T ss_conf             998763023212333


No 89 
>>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} (A:)
Probab=83.02  E-value=3.4  Score=21.25  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             CCEEEEEEECCCCC------CCCCCEE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEE-EEEEEEECCCCEEEEE
Q ss_conf             71899999705435------6888627-99987489479999973521058668145988999-9996675288437999
Q gi|254780791|r   33 SHVCVRGEISGYRG------IHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLV-IGKITTFPGSSKYQII  104 (529)
Q Consensus        33 ~~~~v~gEis~~~~------~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~-~g~~~~y~~~g~~ql~  104 (529)
                      .++.|+|-|.....      ....|++ .+.|-|+.+.|++++|.....    .++.|+-|.+ .++++.|  +|.|+|.
T Consensus        13 ~~~~i~~rV~~~~~~r~~~~~~~~~~~~~~~i~DetG~I~~t~w~~~~~----~l~~G~v~~i~n~~v~~~--~g~~~l~   86 (119)
T 1o7i_A           13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTAF--KGQVQLN   86 (119)
T ss_dssp             SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE--TTEEEEE
T ss_pred             CCEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCEEEEEEECCCCC----CCCCCCEEEEEEEEEEEE--CCEEEEE
T ss_conf             8789999999887873475289977999999985998799998236314----389999999955699997--9989999


Q ss_pred             EE
Q ss_conf             99
Q gi|254780791|r  105 IE  106 (529)
Q Consensus       105 v~  106 (529)
                      +.
T Consensus        87 ~~   88 (119)
T 1o7i_A           87 AG   88 (119)
T ss_dssp             EC
T ss_pred             EC
T ss_conf             89


No 90 
>>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} (A:1-284)
Probab=82.85  E-value=3.5  Score=21.20  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHH--------------HHCCH--HHHHHHHHHCCCE
Q ss_conf             111036799999999741003576777589995168884----442--------------20076--9999999748904
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDL--------------WHFND--EMIVRAIANSSIP  242 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL--------------~~FN~--e~laraI~~~~iP  242 (529)
                      ...-..++..++..++...+      +- +||.+|+|..    -||              ..|..  ..+..++..||.|
T Consensus        33 ~~~~~~~l~~al~~~~~d~~------~~-~viitg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP  105 (284)
T 1wdk_A           33 NRLTLNELRQAVDAIKADAS------VK-GVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVP  105 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHCTT------CC-EEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999975889------66-999978899615273889797354788678877678999999999849898


Q ss_pred             EEEEE-CCCC-CCHHHHHHHCCCCCCCHH
Q ss_conf             88520-5777-525898864123777214
Q gi|254780791|r  243 IISAI-GHET-DWTLADYAADLRAPTPTG  269 (529)
Q Consensus       243 VisgI-GHE~-D~Tl~D~VAD~Ra~TPTa  269 (529)
                      ||++| ||-. ==...=+.+|+|..+|.+
T Consensus       106 vIaav~G~a~GgG~~lalacD~ria~~~a  134 (284)
T 1wdk_A          106 TVAAINGIALGGGLEMCLAADFRVMADSA  134 (284)
T ss_dssp             EEEEECSCEETHHHHHHHTSSEEEEETTC
T ss_pred             EEEEECCCCHHHHHHHHHHCCEEEECCCC
T ss_conf             99997874318999999968999981997


No 91 
>>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} (A:1-213)
Probab=82.57  E-value=3.4  Score=21.28  Aligned_cols=78  Identities=24%  Similarity=0.266  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHCCH-------------HHHHHHHHHCCCEEEEE
Q ss_conf             1036799999999741003576777589995168884-----44220076-------------99999997489048852
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHFND-------------EMIVRAIANSSIPIISA  246 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~FN~-------------e~laraI~~~~iPVisg  246 (529)
                      ....++.++++.+....+      +- +||.+|+|..     .|+....+             ..+.+.+..||.|+|++
T Consensus        39 ~~~~~l~~~~~~~~~~~~------v~-~ivl~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Ia~  111 (213)
T 1hzd_A           39 NLIKMLSKAVDALKSDKK------VR-TIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAA  111 (213)
T ss_dssp             THHHHHHHHHHHHHHCSS------CS-EEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             999999999999985899------35-99997699881589987455540452025677899999999975699988999


Q ss_pred             E-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             0-577752-5898864123777214
Q gi|254780791|r  247 I-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       247 I-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      | ||-.-- .-.=+.+|.|..++.+
T Consensus       112 v~G~a~GgG~~lal~~D~~ia~~~a  136 (213)
T 1hzd_A          112 IDGLALGGGLELALACDIRVAASSA  136 (213)
T ss_dssp             ESEEEETHHHHHHHHSSEEEEETTC
T ss_pred             ECCEEECCCCEECCCCCEEEECCCC
T ss_conf             8997651673102441004215453


No 92 
>>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} (A:1-226)
Probab=82.18  E-value=2.4  Score=22.66  Aligned_cols=81  Identities=22%  Similarity=0.271  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHH------H--HCCHHHHHHHHHHCCCEEEEEE-CC
Q ss_conf             1111036799999999741003576777589995168884---442------2--0076999999974890488520-57
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDL------W--HFNDEMIVRAIANSSIPIISAI-GH  249 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL------~--~FN~e~laraI~~~~iPVisgI-GH  249 (529)
                      -......++.++++.++..       ..-+|||..+|+.+   -|+      .  ...-..+.+.+..||.|+|++| ||
T Consensus        45 l~~~~~~~l~~~l~~~~~~-------~~~~vvi~g~g~~F~~G~d~~~~~~~~~~~~~~~~~~~~l~~~pkp~Ia~v~G~  117 (226)
T 3he2_A           45 LNSQLVEELTQAIRKAGDG-------SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGP  117 (226)
T ss_dssp             BCHHHHHHHHHHHHCC----------CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSC
T ss_pred             CCHHHHHHHHHHHHHCCCC-------CCEEEEEECCCCCEECCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf             9999999999999961189-------955999978998465165650334301235899999999985899899997787


Q ss_pred             CCCC-HHHHHHHCCCCCCCHH
Q ss_conf             7752-5898864123777214
Q gi|254780791|r  250 ETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       250 E~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      =.-- ...=+.+|+|..+..+
T Consensus       118 a~GgG~~lal~~D~~i~~~~a  138 (226)
T 3he2_A          118 AIGAGLQLAMQCDLRVVAPDA  138 (226)
T ss_dssp             EETHHHHHHHHSSEEEECTTC
T ss_pred             EEHHHHHHHHHCCEEEECCCC
T ss_conf             654779999853644410023


No 93 
>>2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* (A:1-211)
Probab=82.13  E-value=3.7  Score=20.99  Aligned_cols=81  Identities=17%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----------------HHHHHC--CHHHHHHHHHHCCCEEE
Q ss_conf             111036799999999741003576777589995168884----------------442200--76999999974890488
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----------------EDLWHF--NDEMIVRAIANSSIPII  244 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----------------eDL~~F--N~e~laraI~~~~iPVi  244 (529)
                      ...-..++..+++.+....      .+-+||+.-|||-.                +.++.|  .-..+.+++..||.|||
T Consensus        37 ~~~~~~~l~~~l~~~~~d~------~v~~vVl~g~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~I  110 (211)
T 2iex_A           37 RPKTVNEMIDAFTKARDDS------NIGVIILTGAGGKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVI  110 (211)
T ss_dssp             CHHHHHHHHHHHHHHHHCT------TCCEEEEEESSSSEEECCBC---------------CCCTHHHHHHHHHHSSSCEE
T ss_pred             CHHHHHHHHHHHHHHHHCC------CCCEEEECCCCCHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             9999999999999997486------6652442268850110565787530346402344566531134667764068489


Q ss_pred             EEECCCCCC--HHHHHHHCCCCCCCHH
Q ss_conf             520577752--5898864123777214
Q gi|254780791|r  245 SAIGHETDW--TLADYAADLRAPTPTG  269 (529)
Q Consensus       245 sgIGHE~D~--Tl~D~VAD~Ra~TPTa  269 (529)
                      ++|---.=-  .-.=+.+|.|..++.+
T Consensus       111 a~v~G~a~ggG~~lal~~D~~ia~~~a  137 (211)
T 2iex_A          111 AMVAGYAIGGGHVLHVVCDLTIAADNA  137 (211)
T ss_dssp             EEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             EEECCEECCCCCCHHHCCCCCEECCCC
T ss_conf             997663225412012235513554898


No 94 
>>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} (A:1-236)
Probab=82.05  E-value=3.7  Score=20.97  Aligned_cols=83  Identities=24%  Similarity=0.461  Sum_probs=47.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC------CCCHHHH------------HHCCH--HHHHHHHHHCCC
Q ss_conf             111103679999999974100357677758999516------8884442------------20076--999999974890
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG------GGSIEDL------------WHFND--EMIVRAIANSSI  241 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG------GGS~eDL------------~~FN~--e~laraI~~~~i  241 (529)
                      -...-..++.++++.+.....      +-+||+.-|      ||....+            +.|.+  ..+.+.+..||.
T Consensus        41 l~~~~~~~l~~~l~~~~~d~~------~~~vi~~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  114 (236)
T 3g64_A           41 LTFEAYADLRDLLAELSRRRA------VRALVLAGEGRGFCSGGDVDEIIGATLSXDTARLLDFNRXTGQVVRAVRECPF  114 (236)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTC------CSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHCCCC
T ss_conf             899999999999999973999------43999852554432011066642012221210022222320001566533798


Q ss_pred             EEEEEE-CCCCC-CHHHHHHHCCCCCCCHHH
Q ss_conf             488520-57775-258988641237772145
Q gi|254780791|r  242 PIISAI-GHETD-WTLADYAADLRAPTPTGA  270 (529)
Q Consensus       242 PVisgI-GHE~D-~Tl~D~VAD~Ra~TPTaA  270 (529)
                      |||++| ||-.= =.-.=+.+|.|..|+++.
T Consensus       115 p~Iaav~G~a~GgG~~l~l~~D~~ia~~~a~  145 (236)
T 3g64_A          115 PVIAALHGVAAGAGAVLALAADFRVADPSTR  145 (236)
T ss_dssp             CEEEEECSEEETHHHHHHHHSSEEEECTTCE
T ss_pred             EEEEEECCEEHHCCCHHHHCCCCCCCCCCCC
T ss_conf             2999984746212349774511133340010


No 95 
>>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} (A:1-221)
Probab=81.99  E-value=2.5  Score=22.52  Aligned_cols=77  Identities=25%  Similarity=0.257  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------------HHHHHCC--HHHHHHHHHHCCCEEEEEE-CC
Q ss_conf             36799999999741003576777589995168884--------------4422007--6999999974890488520-57
Q gi|254780791|r  187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------------EDLWHFN--DEMIVRAIANSSIPIISAI-GH  249 (529)
Q Consensus       187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------------eDL~~FN--~e~laraI~~~~iPVisgI-GH  249 (529)
                      ..++..++..+...      +.+.+||+.-+|+..              ++.+.|.  -..+..++..+|.|||++| ||
T Consensus        33 ~~~l~~~l~~~~~~------~~~~~vv~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~Iaav~G~  106 (221)
T 1ef8_A           33 IDDLMQALSDLNRP------EIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGS  106 (221)
T ss_dssp             HHHHHHHHHHTCST------TCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSE
T ss_pred             HHHHHHHHHHHCCC------CCEEEEEECCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf             99999999986179------976999988888860547978353355662167799999999999997899999997681


Q ss_pred             CCC-CHHHHHHHCCCCCCCHH
Q ss_conf             775-25898864123777214
Q gi|254780791|r  250 ETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       250 E~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      =.- -.-.-+.+|.|..|+.+
T Consensus       107 a~ggG~~lala~D~~ia~~~a  127 (221)
T 1ef8_A          107 VWGGAFEMIMSSDLIIAASTS  127 (221)
T ss_dssp             EETHHHHHHHHSSEEEEETTC
T ss_pred             EEHHHHHHHHCCCEEEECCCC
T ss_conf             222256467425568873776


No 96 
>>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} (A:)
Probab=81.90  E-value=2.9  Score=21.98  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC--------CEEEEEEEC-CCCCCCCCCCCCCCEEEEEE
Q ss_conf             0171899999705---43568886279--998------7489--------479999973-52105866814598899999
Q gi|254780791|r   31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH--------SRIDAIIWK-GTLNKIEFLPEEGIEFLVIG   90 (529)
Q Consensus        31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~--------a~i~~~~~~-~~~~~~~~~~~~G~~v~~~g   90 (529)
                      .+..|-+.|-|.+   ++ ...+|..|  |+|      +|.+        .-..|++|. ..+..+.-.++.|+.|.|.|
T Consensus        22 ~mN~v~l~G~l~~dpe~r-~t~~G~~~~~f~la~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~l~KG~~V~v~G  100 (169)
T 3lgj_A           22 MLNKVMLIGYLGDDPESK-TMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG  100 (169)
T ss_dssp             CEEEEEEEEEESSCCEEE-ECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEEEEEEEEECCCCEEE-ECCCCCEEEEEEEEEECCEECCCCCEECCCCCEEEEEEECCHHHHHHHHHCCCCCEEEEEE
T ss_conf             015899999916897799-8799987999999983333136776352432189998635068999998668999899999


Q ss_pred             EEEE--EC-----CCCEEEEEEEEEEEC
Q ss_conf             9667--52-----884379999971016
Q gi|254780791|r   91 KITT--FP-----GSSKYQIIIESLIPS  111 (529)
Q Consensus        91 ~~~~--y~-----~~g~~ql~v~~i~~~  111 (529)
                      ++..  |.     .+..+.+.+++|...
T Consensus       101 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l  128 (169)
T 3lgj_A          101 KLQTRKWQDKNGHDRYTTEIVLPQYKGE  128 (169)
T ss_dssp             EEEEECC--------CEEEEEECTTCCE
T ss_pred             EEECCEEECCCCCEEEEEEEEEEECCCC
T ss_conf             9853417999997899999999823571


No 97 
>>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} (A:)
Probab=81.60  E-value=3.8  Score=20.85  Aligned_cols=82  Identities=17%  Similarity=0.222  Sum_probs=56.7

Q ss_pred             CCCCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC-------------CEEEEEEECCC-CCCCCCCCCCCCE
Q ss_conf             0171899999705---43568886--2799987------489-------------47999997352-1058668145988
Q gi|254780791|r   31 NLSHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH-------------SRIDAIIWKGT-LNKIEFLPEEGIE   85 (529)
Q Consensus        31 ~~~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~-------------a~i~~~~~~~~-~~~~~~~~~~G~~   85 (529)
                      .+.+|-+.|-|..   ++. ..+|  .+-|+|.      |.+             .-++|++|... +..+.-.++-|+.
T Consensus        13 ~mN~v~l~G~l~~dpel~~-~~~g~~~~~f~ia~~~~~~~~~g~~~~~~~~~~~t~~~~vv~~g~~~a~~~~~~l~kG~~   91 (132)
T 3ull_A           13 SLNRVHLLGRVGQDPVLRQ-VEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSR   91 (132)
T ss_dssp             CEEEEEEEEEECSCCEEEC-CTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCE
T ss_pred             CCEEEEEEEECCCCCEEEE-CCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEEEHHHHHHHHHCCCCCE
T ss_conf             8239999998887988998-699987999999844530166664112540044340986454740565434652447889


Q ss_pred             EEEEEEEEE--EC-C----CCEEEEEEEEEEECCC
Q ss_conf             999999667--52-8----8437999997101680
Q gi|254780791|r   86 FLVIGKITT--FP-G----SSKYQIIIESLIPSGS  113 (529)
Q Consensus        86 v~~~g~~~~--y~-~----~g~~ql~v~~i~~~g~  113 (529)
                      |.|.|++..  |. +    +.++.+.++.|.+.+-
T Consensus        92 v~V~G~l~~~~~~~~dG~~~~~~~i~a~~i~~l~~  126 (132)
T 3ull_A           92 IYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSD  126 (132)
T ss_dssp             EEEEEEEECCCEESSSSEECCCEEEEEEEEECC--
T ss_pred             EEEEEEECCCEEECCCCCEEEEEEEEEEEEEECCC
T ss_conf             99993882311098999899999999969998889


No 98 
>>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} (A:1-238)
Probab=81.58  E-value=1.8  Score=23.79  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-------HHHHHHCCH--------HHHHHHHHHCCCEEEEE
Q ss_conf             111103679999999974100357677758999516888-------444220076--------99999997489048852
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-------IEDLWHFND--------EMIVRAIANSSIPIISA  246 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-------~eDL~~FN~--------e~laraI~~~~iPVisg  246 (529)
                      .....-.++..+++.+....      .+- +||..|||.       +..++..+.        ..+.+.+..||.|+|++
T Consensus        31 l~~~~~~~L~~~l~~~~~d~------~~~-vvvl~~~~~~F~~g~dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~  103 (238)
T 1mj3_A           31 LCNGLIEELNQALETFEEDP------AVG-AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAA  103 (238)
T ss_dssp             BCHHHHHHHHHHHHHHHHCT------TCC-EEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCC------CCE-EEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999999999997689------924-99998799961078765653234324567789999998852699968999


Q ss_pred             E-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             0-577752-5898864123777214
Q gi|254780791|r  247 I-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       247 I-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      | ||=.-- ...=+.+|.|..|+.+
T Consensus       104 v~G~a~GgG~~lala~D~~i~~~~~  128 (238)
T 1mj3_A          104 VNGYALGGGCELAMMCDIIYAGEKA  128 (238)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             ECCEEEHHHHHHHHHCCEEEECCCC
T ss_conf             8884528989999978999975998


No 99 
>>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} (A:1-209)
Probab=81.23  E-value=3.9  Score=20.75  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------------------HHHHHCCH--HHHHHHHHHC
Q ss_conf             1111036799999999741003576777589995168884--------------------44220076--9999999748
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------------------EDLWHFND--EMIVRAIANS  239 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------------------eDL~~FN~--e~laraI~~~  239 (529)
                      -......++..+++.+....      .+-+||+.-||+.+                    .....|++  ..+.+++..|
T Consensus        30 ~~~~~~~~l~~~l~~~~~d~------~v~~vv~~~~~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  103 (209)
T 3l3s_A           30 LSRAXIAALHDALRRAXGDD------HVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALXLDLAHC  103 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHTCT------TCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999996489------966999978999858561202124444563100136788999999999999866


Q ss_pred             CCEEEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             90488520-57775-25898864123777214
Q gi|254780791|r  240 SIPIISAI-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       240 ~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      |.|||.+| ||=.- =.-.=+.+|.|..++.+
T Consensus       104 ~kp~Iaav~G~a~GgG~~lalacD~~ia~~~~  135 (209)
T 3l3s_A          104 PKPTIALVEGIATAAGLQLXAACDLAYASPAA  135 (209)
T ss_dssp             SSCEEEEESSEEETHHHHHHHHSSEEEECTTC
T ss_pred             CCCEEEEECCCEECCCHHHHHCCCCCCHHHCC
T ss_conf             88889972473235511223323311011026


No 100
>>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} (A:)
Probab=81.11  E-value=4  Score=20.72  Aligned_cols=70  Identities=11%  Similarity=0.118  Sum_probs=46.9

Q ss_pred             CEEEEEEECCCCCC--CC-CC---EEEEEEECCC-----CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEE
Q ss_conf             18999997054356--88-86---2799987489-----4799999735210586681459889999-996675288437
Q gi|254780791|r   34 HVCVRGEISGYRGI--HS-SG---HAYFSLKDNH-----SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKY  101 (529)
Q Consensus        34 ~~~v~gEis~~~~~--~~-sG---H~Yf~lkd~~-----a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~  101 (529)
                      .|-|.|-|..+...  .+ +|   ++-|+|+|..     -.|.|.+|+.....|+.-...||=|+++ .+|..|.  |..
T Consensus        44 ~VnvigVV~d~~~p~~s~~gg~d~~~tl~I~D~S~~~~~~gl~v~iF~~~~~~LP~v~~~GDIIlL~~vki~~~~--g~~  121 (187)
T 1qzg_A           44 IVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYR--DRT  121 (187)
T ss_dssp             EEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEET--TEE
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEEC--CEE
T ss_conf             888999991036871268899877999999758877878877999989996788997888989999888999987--927


Q ss_pred             EEEE
Q ss_conf             9999
Q gi|254780791|r  102 QIII  105 (529)
Q Consensus       102 ql~v  105 (529)
                      +++.
T Consensus       122 ~~~~  125 (187)
T 1qzg_A          122 QGLS  125 (187)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             8996


No 101
>>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:1-103,A:205-228)
Probab=80.46  E-value=1.8  Score=23.69  Aligned_cols=85  Identities=16%  Similarity=0.155  Sum_probs=57.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCC----HHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             6528999847842589999998630597589997-----21001111----03679999999974100357677758999
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIF-----PVKVQGDE----CPKEIANAILQLNTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~-----p~~vQG~~----a~~~i~~ai~~~~~~~~~~~~~~~D~iii  214 (529)
                      -+-||-||...++.++.+-+.....-. .++..+     |..+.+..    |+..++.++..+..       ..||.+||
T Consensus        10 ~mmRIlvINPNss~~~Te~i~~~a~P~-~~i~~~t~~~GP~~I~~~~d~~laa~~Vl~~~~~a~~-------~g~DAviI   81 (127)
T 2eq5_A           10 GLIRVITLEDKEILNLHGRIIESAFPE-LKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFER-------EGVDAIII   81 (127)
T ss_dssp             EEEESSCCCCHHHHTHHHHHHHHHCTT-EEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHH-------TTCSEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------CCCCEEEE
T ss_conf             899940368289999999888631899-5688725899986667831487858999999999987-------69999998


Q ss_pred             ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             51688844422007699999997489048852
Q gi|254780791|r  215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                      +          ||.|..|--+=-.+.+|||.+
T Consensus        82 a----------CFsDPGL~alRE~~~iPVVGi  103 (127)
T 2eq5_A           82 S----------CAADPAVEKVRKLLSIPVIGA  103 (127)
T ss_dssp             C----------STTCTTHHHHHHHCSSCEEEH
T ss_pred             C----------CCCHHHHHHHHHHCCCCEECC
T ss_conf             4----------787899999998669987523


No 102
>>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:1-78,A:169-196)
Probab=80.11  E-value=4.2  Score=20.46  Aligned_cols=77  Identities=25%  Similarity=0.335  Sum_probs=43.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      +-.+|++|++-.+  +.+....+...+.+++.++-..+         -.+++.+..+..     .+| +||.|||.+   
T Consensus         3 m~~kI~~IAPY~~--L~~~~~~i~~e~~l~I~V~~g~l---------~egv~iAr~l~~-----g~D-VIISRGgTA---   62 (106)
T 2q5c_A            3 LSLKIALISQNEN--LLNLFPKLALEKNFIPITKTASL---------TRASKIAFGLQD-----EVD-AIISRGATS---   62 (106)
T ss_dssp             CCCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEECCH---------HHHHHHHHHHTT-----TCS-EEEEEHHHH---
T ss_pred             CCEEEEEECCCHH--HHHHHHHHHHHCCCEEEEEEEEH---------HHHHHHHHHHHC-----CCC-EEEECCHHH---
T ss_conf             7405999878089--99999999864384655543329---------999999998755-----988-999896489---


Q ss_pred             HHHCCHHHHHHHHH-HCCCEEEE-EECCC
Q ss_conf             22007699999997-48904885-20577
Q gi|254780791|r  224 LWHFNDEMIVRAIA-NSSIPIIS-AIGHE  250 (529)
Q Consensus       224 L~~FN~e~laraI~-~~~iPVis-gIGHE  250 (529)
                                ..|- ..++|||. .||.|
T Consensus        63 ----------~lIr~~v~iPVVeI~i~~~   81 (106)
T 2q5c_A           63 ----------DYIKKSVSIPSISIKVGEE   81 (106)
T ss_dssp             ----------HHHHTTCSSCEEEECCCHH
T ss_pred             ----------HHHHHHCCCCEEEEECCHH
T ss_conf             ----------9999858998899707599


No 103
>>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} (A:)
Probab=79.79  E-value=4.3  Score=20.38  Aligned_cols=77  Identities=21%  Similarity=0.176  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH----HHHHHCC--------------HHHHHHHHHHCCCEEEEE
Q ss_conf             0367999999997410035767775899951688-84----4422007--------------699999997489048852
Q gi|254780791|r  186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI----EDLWHFN--------------DEMIVRAIANSSIPIISA  246 (529)
Q Consensus       186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~----eDL~~FN--------------~e~laraI~~~~iPVisg  246 (529)
                      -..++..++..+....      .+.+| |.+|+| ..    -|++.++              -..+..++..||.|||++
T Consensus        33 ~~~~l~~~l~~~~~d~------~v~~v-Vl~g~g~~~f~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaa  105 (266)
T 3fdu_A           33 LYLWIAKALDEADQNK------DVRVV-VLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIA  105 (266)
T ss_dssp             HHHHHHHHHHHHHHCT------TCCEE-EEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEE
T ss_pred             HHHHHHHHHHHHHHCC------CCEEE-EEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999997589------94699-9978984251573166654200131034444325899999999779987998


Q ss_pred             E-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             0-577752-5898864123777214
Q gi|254780791|r  247 I-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       247 I-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      | ||=.=- ..+=+.+|+|..|+++
T Consensus       106 v~G~a~GgG~~lal~~D~ria~~~a  130 (266)
T 3fdu_A          106 VKGVAIGIGVTILLQADLVFADNTA  130 (266)
T ss_dssp             ECSEEETHHHHGGGGCSEEEECTTC
T ss_pred             ECCEEEECCCEEECCCCCCEECCCC
T ss_conf             6384746452322152311114797


No 104
>>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} (A:)
Probab=79.53  E-value=4.4  Score=20.32  Aligned_cols=69  Identities=10%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             CCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             171899999705---43568886279--9987------48------9479999973521058668145988999999667
Q gi|254780791|r   32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT   94 (529)
Q Consensus        32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~   94 (529)
                      +.+|-+.|-|..   ++. -.+|..|  |+|.      |.      ..-++|++|...+.... .++.|+.|.|.|++..
T Consensus         2 mN~v~l~G~i~~dp~~r~-t~~g~~v~~~~la~~~~~~~~~~~~~~~~~~~v~~~g~~Ae~~~-~l~kG~~V~V~G~l~~   79 (101)
T 3en2_A            2 INRLQLVATLVEREVXRY-TPAGVPIVNCLLSYSGQAXEAQAARQVEFSIEALGAGKXASVLD-RIAPGTVLECVGFLAR   79 (101)
T ss_dssp             CCCEEEEEEEEEECCCEE-CTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHT-TSCTTCEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCCCEEE-CCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEEECHHHHHHH-HCCCCCEEEEEEEEEC
T ss_conf             209999999887874589-78873699999997457840553031146540999928966556-3189999999999825


Q ss_pred             --EC-CCCEEE
Q ss_conf             --52-884379
Q gi|254780791|r   95 --FP-GSSKYQ  102 (529)
Q Consensus        95 --y~-~~g~~q  102 (529)
                        |. +.|.+.
T Consensus        80 ~~~~~~~g~~~   90 (101)
T 3en2_A           80 KHRSSKALVFH   90 (101)
T ss_dssp             CC----CEEEE
T ss_pred             CCCCCCCEEEE
T ss_conf             78658836999


No 105
>>1kq3_A Glycerol dehydrogenase; zinc, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.50A {Thermotoga maritima} (A:20-169)
Probab=79.49  E-value=0.74  Score=27.24  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             CCCCCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             3102652899984784258--99999986305975899972100111103679999999974100357677758999516
Q gi|254780791|r  140 PIPFIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      -+..+-+++-|||.++...  +.|.+...-.+..+.+.+|+     +.....+.++.+.+...       ++| .||+=|
T Consensus        17 ~l~~~g~~~livtd~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~~d-~iiaiG   83 (150)
T 1kq3_A           17 ELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFG-----GECSDEEIERLSGLVEE-------ETD-VVVGIG   83 (150)
T ss_dssp             HHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECC-----SSCBHHHHHHHHTTCCT-------TCC-EEEEEE
T ss_pred             HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECC-----CCCCCHHHHHHHHHHHC-------CCC-EEEEEC
T ss_conf             99966992899989765560599999998987698799638-----99993799999999853-------999-899947


Q ss_pred             CCCHHHHHHCCHHHHHHHHHHCC------CEEEEEECCCC
Q ss_conf             88844422007699999997489------04885205777
Q gi|254780791|r  218 GGSIEDLWHFNDEMIVRAIANSS------IPIISAIGHET  251 (529)
Q Consensus       218 GGS~eDL~~FN~e~laraI~~~~------iPVisgIGHE~  251 (529)
                      |||.-|+        |++++...      +|...|.|=|.
T Consensus        84 GGsv~D~--------aK~~a~~~~~~~i~vPTt~~t~s~~  115 (150)
T 1kq3_A           84 GGKTLDT--------AKAVAYKLKKPVVIVPTIASTDAPC  115 (150)
T ss_dssp             SHHHHHH--------HHHHHHHTTCCEEEEESSCCCSCTT
T ss_pred             CCHHHHH--------HHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             9602110--------2688741478728854777768576


No 106
>>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} (A:)
Probab=79.34  E-value=4.3  Score=20.41  Aligned_cols=88  Identities=17%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECC--CCCCCCCCEEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf             986229999999999974001--71899999705--435688862799987489-4799999735210586681459889
Q gi|254780791|r   12 HPEYSVSELSYHLKHIVESNL--SHVCVRGEISG--YRGIHSSGHAYFSLKDNH-SRIDAIIWKGTLNKIEFLPEEGIEF   86 (529)
Q Consensus        12 ~~~~svs~l~~~i~~~l~~~~--~~~~v~gEis~--~~~~~~sGH~Yf~lkd~~-a~i~~~~~~~~~~~~~~~~~~G~~v   86 (529)
                      .+.||+||+...-...-+...  ..|.|.|-|-.  +...+.+.++=|.|.|.. +.|.. .|.+   -++-..++|..|
T Consensus        10 ~yf~tpse~~~~~~~~~~~~~~g~~vrv~G~V~~gSi~~~~~~~~~~F~itD~~~~~i~V-~Y~G---~~Pd~F~eg~~V   85 (136)
T 1j6q_A           10 NLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILV-TYDD---LLPDLFREGQGI   85 (136)
T ss_dssp             CCEECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEE-EECS---CCTTSCCSSSEE
T ss_pred             EEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEECCCCCEEEEE-EECC---CCCHHHCCCCCE
T ss_conf             599888997234464445556796899857997607885278726999986676208999-9789---796210279828


Q ss_pred             EEEEEEEEECCCCEEEEEEEEE
Q ss_conf             9999966752884379999971
Q gi|254780791|r   87 LVIGKITTFPGSSKYQIIIESL  108 (529)
Q Consensus        87 ~~~g~~~~y~~~g~~ql~v~~i  108 (529)
                      ++.|++   ...|.  |.++.|
T Consensus        86 Vv~G~~---~~~g~--F~A~~i  102 (136)
T 1j6q_A           86 VAQGVL---GEDGK--LAATEV  102 (136)
T ss_dssp             EEEEEE---CSTTS--EEEEEE
T ss_pred             EEEEEE---CCCCE--EEEEEE
T ss_conf             999997---88986--999699


No 107
>>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} (A:1-244)
Probab=79.30  E-value=4.5  Score=20.26  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC------HHHHHHCC------------HHHHHHHHHHCCCEEEEE
Q ss_conf             103679999999974100357677758999516888------44422007------------699999997489048852
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS------IEDLWHFN------------DEMIVRAIANSSIPIISA  246 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS------~eDL~~FN------------~e~laraI~~~~iPVisg  246 (529)
                      .-..+|..++..+....      .+-+|||.=.|+.      +.+++...            -..+.+.+..||.|+|++
T Consensus        37 ~~~~~l~~al~~~~~d~------~~~~vVl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~kp~Iaa  110 (244)
T 1wz8_A           37 ALHRGLARVWRDLEAVE------GVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA  110 (244)
T ss_dssp             HHHHHHHHHHHHHTTCT------TCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred             HHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999996299------974999964554211122201233101233221101356667787764202311320


Q ss_pred             E-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             0-577752-5898864123777214
Q gi|254780791|r  247 I-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       247 I-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      | ||=.-- ...=+.+|+|..++.+
T Consensus       111 v~G~a~ggG~~l~l~~D~~ia~~~a  135 (244)
T 1wz8_A          111 VEKVAVGAGLALALAADIAVVGKGT  135 (244)
T ss_dssp             ECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             3433566543421131111223334


No 108
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276)
Probab=78.69  E-value=4.6  Score=20.12  Aligned_cols=97  Identities=10%  Similarity=0.030  Sum_probs=60.3

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      +.+||||.+. +..-+..+++.+.+   +..+.+.++++.-..+    .-.++++.+-..       ++|.|||+-.+.+
T Consensus         2 s~~Igvi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~d~~----~e~~~i~~l~~~-------~vDGIIi~~~~~~   70 (134)
T 2vk2_A            2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE----NQIKAVRSFVAQ-------GVDAIFIAPVVAT   70 (134)
T ss_dssp             CCEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHH----HHHHHHHHHHHH-------TCSEEEECCSSSS
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH----HHHHHHHHHHHC-------CCCEEEEECCCCC
T ss_conf             84999996899899999999999999998599899995899999----999999999975-------9999998325654


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             444220076999999974890488520577752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                             ....+++.+.+..||||.==-+-.+....-++
T Consensus        71 -------~~~~~i~~~~~~~iPVV~id~~~~~~~~~~vv  102 (134)
T 2vk2_A           71 -------GWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM  102 (134)
T ss_dssp             -------SCHHHHHHHHHTTCCEEEESSCCCCSCGGGSS
T ss_pred             -------CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
T ss_conf             -------11688999986199757744544555566652


No 109
>>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376)
Probab=78.54  E-value=4.7  Score=20.08  Aligned_cols=82  Identities=24%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH--HCCCEEEEEEC------
Q ss_conf             7210011110367999999997410035767775899951688844422007699999997--48904885205------
Q gi|254780791|r  177 FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA--NSSIPIISAIG------  248 (529)
Q Consensus       177 ~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~--~~~iPVisgIG------  248 (529)
                      +.....+..-...+...+..+...-..   .+||+|++.      -|    -.+.+|-|++  .+.|||+-==|      
T Consensus        63 l~~~~~~~sl~~~~~~~i~~~~~~l~~---~~PD~VlV~------GD----t~~~lA~AlaA~~~~IPvaHieaGlrS~d  129 (204)
T 1v4v_A           63 LDVXQERQALPDLAARILPQAARALKE---XGADYVLVH------GD----TLTTFAVAWAAFLEGIPVGHVEAGLRSGN  129 (204)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHHHHHH---TTCSEEEEE------SS----CHHHHHHHHHHHHTTCCEEEETCCCCCSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEC------CC----CCCCHHHHHHHHHHHHHHHEECCCCCCCC
T ss_conf             787898888999999999987766540---476523101------36----64311367889876344511103556666


Q ss_pred             ------CCCCCHHHHHHHCCC-CCCCHHHH
Q ss_conf             ------777525898864123-77721456
Q gi|254780791|r  249 ------HETDWTLADYAADLR-APTPTGAA  271 (529)
Q Consensus       249 ------HE~D~Tl~D~VAD~R-a~TPTaAA  271 (529)
                            -|...-++|-+||+- +||+.++.
T Consensus       130 ~~~~~pEE~~R~~is~lA~lHF~~t~~~~~  159 (204)
T 1v4v_A          130 LKEPFPEEANRRLTDVLTDLDFAPTPLAKA  159 (204)
T ss_dssp             TTSSTTHHHHHHHHHHHCSEEEESSHHHHH
T ss_pred             CCCCCHHHHHHHHHCCCCCEEEECCHHHHH
T ss_conf             567734666554412344436522116677


No 110
>>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} (A:26-111)
Probab=78.51  E-value=3.1  Score=21.63  Aligned_cols=44  Identities=18%  Similarity=0.364  Sum_probs=36.4

Q ss_pred             CCEEEEECCCCCEECCHHHCCCCCEEEEEEECEE-EEEEEEECCC
Q ss_conf             4619998489889577789299986999991109-9999950578
Q gi|254780791|r  460 RGYTSIQDTNNNFITQKRNLATKTRILINFFDGQ-ANAIVINKAP  503 (529)
Q Consensus       460 RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~-v~a~V~~k~~  503 (529)
                      -|-.++-+++|.++++..-+...+.+.+.|.||+ ..++|....+
T Consensus        23 ~GsGfii~~~G~IlTn~Hvv~~~~~i~v~~~dg~~~~a~vv~~d~   67 (86)
T 1lcy_A           23 NGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDP   67 (86)
T ss_dssp             EEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEEEEEEEEEET
T ss_pred             CEEEEEEECCCEEEECHHHCCCCCEEEEEECCCCEEEEEEEEECC
T ss_conf             389999959989998777706997799997699899999985663


No 111
>>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} (A:)
Probab=78.02  E-value=4.8  Score=19.97  Aligned_cols=81  Identities=22%  Similarity=0.366  Sum_probs=59.6

Q ss_pred             CEEEEEECCC-------------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             2899984784-------------2589999998630---59758999721001111036799999999741003576777
Q gi|254780791|r  146 KIIAVITSPT-------------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       146 ~~i~vits~~-------------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      .+|-||-.|+             ..-+.|+...+++   ..++++..|-+---|     +|+.+|..+..        .+
T Consensus         3 ~~ilvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG-----elid~i~~a~~--------~~   69 (146)
T 1h05_A            3 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEA-----QLLDWIHQAAD--------AA   69 (146)
T ss_dssp             CEEEEEECTTGGGTTTC------CCCHHHHHHHHHHHHHHTTCEEEEEECSCHH-----HHHHHHHHHHH--------HT
T ss_pred             CEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH-----HHHHHHHHHHC--------CC
T ss_conf             789998288700058878863885699999999999999839748897537599-----99999998530--------46


Q ss_pred             CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             589995168884442200769999999748904885
Q gi|254780791|r  210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      |.|||==||      |.+-...+..|+...++|+|-
T Consensus        70 dgiIINpga------~ThtS~al~DAl~~~~~P~VE   99 (146)
T 1h05_A           70 EPVILNAGG------LTHTSVALRDACAELSAPLIE   99 (146)
T ss_dssp             CCEEEECGG------GGGTCHHHHHHHHTCCSCEEE
T ss_pred             CCEEECCCH------HHHHHHHHHHHHHHCCCCEEE
T ss_conf             726971521------222448999999854998899


No 112
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:1-161,A:294-339)
Probab=77.92  E-value=4.8  Score=19.95  Aligned_cols=120  Identities=11%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCC-CEEEEEECCC-HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             9999999976540122610016310265-2899984784-2589999998630---597589997210011110367999
Q gi|254780791|r  118 TALEKRKKKLLEEGLFSDQHKNPIPFIP-KIIAVITSPT-GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIAN  192 (529)
Q Consensus       118 ~~~e~lk~~L~~eGlfd~~~k~~lP~~p-~~i~vits~~-~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~  192 (529)
                      ...++..+-.++-||......+.+..-. ..||+|.... ..-+.+|++-+..   ...+.+.++++....    ..-.+
T Consensus        34 eTr~rV~~aa~elGY~pn~~ar~l~~~~s~~Igii~~~~~npf~~~ii~Gie~aa~~~g~~l~i~~~~~~~----~~e~~  109 (207)
T 3h5o_A           34 QLREKVXQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQXLIGNSHYDA----GQELQ  109 (207)
T ss_dssp             -----------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCH----HHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCH----HHHHH
T ss_conf             99999999999978976977876510776189999544321369999999999999749979998503541----67888


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE---CCCCCCHHHH
Q ss_conf             9999974100357677758999516888444220076999999974890488520---5777525898
Q gi|254780791|r  193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI---GHETDWTLAD  257 (529)
Q Consensus       193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI---GHE~D~Tl~D  257 (529)
                      +++.+...       ++|.||+.=         ...++.+...+....||+|.--   ++..+...+|
T Consensus       110 ~l~~l~~~-------~vdGiIi~~---------~~~~~~~~~~l~~~~IPvVl~d~~~~~~~~~V~~D  161 (207)
T 3h5o_A          110 LLRAYLQH-------RPDGVLITG---------LSHAEPFERILSQHALPVVYXXDLADDGRCCVGFS  161 (207)
T ss_dssp             HHHHHHTT-------CCSEEEEEC---------SCCCTTHHHHHHHTTCCEEEEESCCSSSCCEEECC
T ss_pred             HHHHHHHC-------CCCEEEEEE---------ECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEH
T ss_conf             89999855-------764279984---------03320134444201333200124445533034205


No 113
>>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metabolism, lipid metabolism, lyase; 1.80A {Mycobacterium tuberculosis} (A:)
Probab=77.89  E-value=4.7  Score=20.05  Aligned_cols=81  Identities=16%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CHHHH--------HHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             11110367999999997410035767775899951688-------84442--------2007699999997489048852
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-------SIEDL--------WHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-------S~eDL--------~~FN~e~laraI~~~~iPVisg  246 (529)
                      -......++..++..+.....      +- +||.+|.|       .+..+        |.-.-..+.+.+..||.|||++
T Consensus        49 l~~~~~~~l~~~l~~~~~d~~------v~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaa  121 (278)
T 3h81_A           49 LNSQVMNEVTSAATELDDDPD------IG-AIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAA  121 (278)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTT------CC-EEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCC------CC-EEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             999999999999998524987------01-45421566432368877886411121213678877777752389989999


Q ss_pred             E-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             0-57775-25898864123777214
Q gi|254780791|r  247 I-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       247 I-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      | ||-.= =.-.=+.+|.|..|+.+
T Consensus       122 v~G~a~GgG~~lalacD~ri~~~~a  146 (278)
T 3h81_A          122 VAGYALGGGCELAMMCDVLIAADTA  146 (278)
T ss_dssp             ECBEEETHHHHHHHHSSEEEEETTC
T ss_pred             ECCCCHHHHHHHHHHCCEEEEECCC
T ss_conf             8260618999999978999982998


No 114
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:1-106,A:224-276)
Probab=77.63  E-value=4.9  Score=19.88  Aligned_cols=93  Identities=19%  Similarity=0.243  Sum_probs=63.4

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -+.||||.+. +..-+..+++-+..   .+++.+.++++    .+.......+++.+...       ++|.||+.     
T Consensus         7 s~~Igvi~~~~~~~~~~~i~~gi~~~~~~~gy~l~i~~~----~~~~~~~~~~l~~l~~~-------~vdGiIi~-----   70 (159)
T 3jy6_A            7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA----NADIEREKTLLRAIGSR-------GFDGLILQ-----   70 (159)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC----TTCHHHHHHHHHHHHTT-------TCSEEEEE-----
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHC-------CCCCCCCC-----
T ss_conf             998999928998989999999999999986999999948----99989999999999953-------88853124-----


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             444220076999999974890488520577752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                           ++++....+.+.+..+|||.- |...+..-+++|
T Consensus        71 -----~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V  103 (159)
T 3jy6_A           71 -----SFSNPQTVQEILHQQMPVVSV-DREMDACPWPQV  103 (159)
T ss_dssp             -----SSCCHHHHHHHHTTSSCEEEE-SCCCTTCSSCEE
T ss_pred             -----CCCHHHHHHHHHHCCCCEECC-CCCCCCCCCCCC
T ss_conf             -----620047788888628730002-345455778742


No 115
>>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* (A:)
Probab=77.44  E-value=5  Score=19.84  Aligned_cols=36  Identities=31%  Similarity=0.560  Sum_probs=30.5

Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             310265289998478425899999986305975899
Q gi|254780791|r  140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI  175 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~  175 (529)
                      ..|.-|.||+++.|..++++.++++.+..+.+.++.
T Consensus         7 ~~~~~pmki~~~gs~~~~~l~~ll~~~~~~~~~~i~   42 (215)
T 3da8_A            7 VPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVV   42 (215)
T ss_dssp             ECCCSSEEEEEEESSCCHHHHHHHHHSSTTCSEEEE
T ss_pred             CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE
T ss_conf             899998889999837815599999963879997799


No 116
>>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} (A:1-249)
Probab=77.33  E-value=5  Score=19.82  Aligned_cols=81  Identities=19%  Similarity=0.202  Sum_probs=44.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHHHHC------------------------CHHHHH
Q ss_conf             11110367999999997410035767775899951688-84---442200------------------------769999
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDLWHF------------------------NDEMIV  233 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL~~F------------------------N~e~la  233 (529)
                      -......++..+|+.++...      .+-+|| .+|+| +.   -|+-.+                        +-..+.
T Consensus        28 l~~~~~~~l~~al~~~~~d~------~v~~vi-~tg~g~~f~sG~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (249)
T 1dci_A           28 MNRAFWRELVECFQKISKDS------DCRAVV-VSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTF  100 (249)
T ss_dssp             BCHHHHHHHHHHHHHHHTCT------TCCEEE-EEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCC------CCEEEE-EECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999997399------966999-96346653468148987413134532111220123223444445666


Q ss_pred             HHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             99974890488520-577752-5898864123777214
Q gi|254780791|r  234 RAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       234 raI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      +.+.+||.|+|.+| ||-.-- ...=+.+|+|..|+.+
T Consensus       101 ~~l~~~pkp~Iaav~G~a~GgG~~la~~cD~ria~~~a  138 (249)
T 1dci_A          101 TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA  138 (249)
T ss_dssp             HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTC
T ss_pred             HHHHCCCCEEEEEECCEEEHHHHHHHHHCCEEECCCCC
T ss_conf             55531597399998277462528887514760003676


No 117
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:1-112,A:246-289)
Probab=77.19  E-value=3.8  Score=20.85  Aligned_cols=94  Identities=12%  Similarity=0.082  Sum_probs=57.2

Q ss_pred             CCCEEEEEECCCH-HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             6528999847842-589999998630---597589997210011110367999999997410035767775899951688
Q gi|254780791|r  144 IPKIIAVITSPTG-AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       144 ~p~~i~vits~~~-a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      -+.+||||.+..+ --+..++.-+.+   .+++++.++.+.-+++..  .-...|+.+-..       ++|.|||.=...
T Consensus         6 ~s~~Igvi~~~~~~pf~~~i~~gi~~~a~~~g~~v~~~~~~s~~d~~--~q~~~i~~l~~~-------~vdgiIi~~~~~   76 (156)
T 3brs_A            6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYL--VQNELIEEAIKR-------KPDVILLAAADY   76 (156)
T ss_dssp             CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHH--HHHHHHHHHHHT-------CCSEEEECCSCT
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH--HHHHHHHHHHHC-------CCCEEEEECCCC
T ss_conf             38999982589999899999999999999819989999679988999--999999999976-------999999978720


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             8444220076999999974890488520577752
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                      +       ....+++.+.+-.||||+==....+.
T Consensus        77 ~-------~~~~~i~~l~~~gIPVV~id~~~~~~  103 (156)
T 3brs_A           77 E-------KTYDAAKEIKDAGIKLIVIDSGMKQD  103 (156)
T ss_dssp             T-------TTHHHHTTTGGGTCEEEEESSCCSSC
T ss_pred             H-------HHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             1-------02899998861387420013433468


No 118
>>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} (A:1-207)
Probab=76.64  E-value=5.2  Score=19.67  Aligned_cols=80  Identities=20%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-----HHHHHHC-------------CHHHHHHHHHHCCCEEE
Q ss_conf             11103679999999974100357677758999516888-----4442200-------------76999999974890488
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-----IEDLWHF-------------NDEMIVRAIANSSIPII  244 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-----~eDL~~F-------------N~e~laraI~~~~iPVi  244 (529)
                      ...-..++..+++.+....+      +- +||.+|+|.     --|+..+             .-..+.+.+..||.|||
T Consensus        34 ~~~~~~~l~~~l~~~~~d~~------v~-~vii~g~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~I  106 (207)
T 3kqf_A           34 SLALLEELQNILTQINEEAN------TR-VVILTGAGEKAFCAGADLKERAGXNEEQVRHAVSXIRTTXEXVEQLPQPVI  106 (207)
T ss_dssp             CHHHHHHHHHHHHHHHTCTT------CC-EEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred             CHHHHHHHHHHHHHHHHCCC------CC-EEEEECCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEE
T ss_conf             99999999999999974999------67-899963878746435301233102112222233223230110104665499


Q ss_pred             EEE-CCCCCCH-HHHHHHCCCCCCCHH
Q ss_conf             520-5777525-898864123777214
Q gi|254780791|r  245 SAI-GHETDWT-LADYAADLRAPTPTG  269 (529)
Q Consensus       245 sgI-GHE~D~T-l~D~VAD~Ra~TPTa  269 (529)
                      ++| ||=.--- ..=+.+|.|..++.+
T Consensus       107 a~v~G~a~GgG~~lal~~D~~ia~~~a  133 (207)
T 3kqf_A          107 AAINGIALGGGTELSLACDFRIAAESA  133 (207)
T ss_dssp             EEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             EEEHHHCCCHHHHHHHCCCEEEECCCC
T ss_conf             974400105778876242578852556


No 119
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:58-160,A:293-340)
Probab=76.20  E-value=5.3  Score=19.58  Aligned_cols=85  Identities=11%  Similarity=0.094  Sum_probs=57.9

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      +.||||.+. +..-+..++.-+.+   ..++.+.++++    ++.......+++.+...       ++|.|||.-...  
T Consensus         2 ~~Igvii~~~~~~f~~~l~~gi~~~a~~~g~~l~i~~~----~~~~e~~~~~i~~l~~~-------~vDGIIi~~~~~--   68 (151)
T 1qpz_A            2 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA----WNNLEKQRAYLSMMAQK-------RVDGLLVMCSEY--   68 (151)
T ss_dssp             SEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHT-------TCSEEEECCSCC--
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHHHHC-------CCCEEEEECCCC--
T ss_conf             57999954666740189999999998748958999415----54448999999999854-------887489814678--


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             4422007699999997489048852057
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                            ++..+.+.+.+..||||.-=..
T Consensus        69 ------~~~~~~~~l~~~~IPvV~id~~   90 (151)
T 1qpz_A           69 ------PEPLLAMLEEYRHIPMVVMDWG   90 (151)
T ss_dssp             ------CHHHHHHHHTTTTSCEEEEEES
T ss_pred             ------CHHHHHHHHHHCCCCEEEECCC
T ss_conf             ------7277888876148877983367


No 120
>>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase, structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} (A:)
Probab=76.05  E-value=4  Score=20.67  Aligned_cols=79  Identities=13%  Similarity=0.038  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf             89999998630597-58999721001111036799999999741003576777589995168884442200769999999
Q gi|254780791|r  158 VIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI  236 (529)
Q Consensus       158 ~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI  236 (529)
                      .++.+...+.+.++ ..++||.+.+.|+.-+.|                  .+|+.|+..++-|..+++.     ++..+
T Consensus        13 ~~~~i~~~l~~~~~i~~v~LFGS~arg~~~~~S------------------DiDi~V~~~~~~~~~~~~~-----~~~~l   69 (114)
T 1no5_A           13 ELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYS------------------DLDLAIISEEPLDFLARDR-----LKEAF   69 (114)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTC------------------CEEEEEECSSCCCHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC------------------CCCEEEEECCCCCHHHHHH-----HHHHH
T ss_conf             999999999972899689998988889868899------------------8678998389999999999-----99999


Q ss_pred             HHCC--CEEEEEECCCCCCHHHHHH
Q ss_conf             7489--0488520577752589886
Q gi|254780791|r  237 ANSS--IPIISAIGHETDWTLADYA  259 (529)
Q Consensus       237 ~~~~--iPVisgIGHE~D~Tl~D~V  259 (529)
                      ....  .+|---+=++....+...|
T Consensus        70 ~~~~~~~~vdvv~~~~~~~~~~~~i   94 (114)
T 1no5_A           70 SESDLPWRVDLLDWATTSEDFREII   94 (114)
T ss_dssp             HHSCCSSCEEEEEGGGSCHHHHHHH
T ss_pred             HHCCCCCEEEEEECCCCCHHHHHHH
T ss_conf             8558998499988201999999999


No 121
>>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} (A:)
Probab=75.93  E-value=5.4  Score=19.52  Aligned_cols=78  Identities=18%  Similarity=0.029  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CH-------------HHHHHCCH--HHHHHHHHHCCCE
Q ss_conf             10367999999997410035767775899951688-------84-------------44220076--9999999748904
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-------SI-------------EDLWHFND--EMIVRAIANSSIP  242 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-------S~-------------eDL~~FN~--e~laraI~~~~iP  242 (529)
                      .-..++..+++.+.....      += +||.+|+|       ..             +..+.|.+  ..+...+..||.|
T Consensus        31 ~~~~~l~~al~~~~~d~~------v~-~vi~~~~g~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~kp  103 (263)
T 3lke_A           31 ELGTSLLEAIRAGNNETS------IH-SIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKV  103 (263)
T ss_dssp             HHHHHHHHHHHHHHHCSS------CC-EEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSE
T ss_pred             HHHHHHHHHHHHHHCCCC------CE-EEEEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999850999------57-99996189865368864001221001003567899999999999999848998


Q ss_pred             EEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             88520-57775-25898864123777214
Q gi|254780791|r  243 IISAI-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       243 VisgI-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      ||++| ||-.= =...=+.+|.|..|+.+
T Consensus       104 ~Iaav~G~a~GgG~~lal~~D~ri~~~~a  132 (263)
T 3lke_A          104 TVALINGYAYGGGFNMMLACDRRIALRRA  132 (263)
T ss_dssp             EEEEECSEEETHHHHGGGGSSEEEEETTC
T ss_pred             EEEEECCEEECCCCHHHCCCCEEEECCCC
T ss_conf             99998466712622211255567754567


No 122
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:1-109,A:242-289)
Probab=75.72  E-value=5.4  Score=19.48  Aligned_cols=88  Identities=11%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ..+||||.+. ++.-+..++.-+..   ..++.+.++++.    +.+.....+++.+...       ++|.||+.-... 
T Consensus         7 s~~Igviip~~~~~f~~~~~~gi~~~a~~~g~~v~i~~~~----~~~~~~~~~i~~l~~~-------~vDGiIi~~~~~-   74 (157)
T 1dbq_A            7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW----NNLEKQRAYLSMMAQK-------RVDGLLVMCSEY-   74 (157)
T ss_dssp             -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECT----TCHHHHHHHHHHHHHT-------TCSEEEEECSCC-
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCEEEECCCCC-
T ss_conf             9979999599989899999999999999869999999689----9989999999998845-------876688426556-


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             4442200769999999748904885205777
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHET  251 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~  251 (529)
                             +++.+........||||.-=.+..
T Consensus        75 -------~~~~~~~~l~~~~iPvV~id~~~~   98 (157)
T 1dbq_A           75 -------PEPLLAMLEEYRHIPMVVMDWGEA   98 (157)
T ss_dssp             -------CHHHHHHHHHTTTSCEEEEECSSC
T ss_pred             -------CHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             -------505789998606996899850368


No 123
>>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} (A:)
Probab=75.42  E-value=5.5  Score=19.42  Aligned_cols=40  Identities=13%  Similarity=0.087  Sum_probs=24.7

Q ss_pred             HHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             999999974890488520-577752-5898864123777214
Q gi|254780791|r  230 EMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       230 e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      ..+..++..||.|||++| ||=.-- .-.=+.+|.|..++.+
T Consensus       102 ~~~~~~l~~~~kP~Iaav~G~a~GgG~~lala~D~ria~~~~  143 (280)
T 1pjh_A          102 VYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK  143 (280)
T ss_dssp             HHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             999999996899989997673357864321120067774442


No 124
>>1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-290)
Probab=75.36  E-value=5.5  Score=19.41  Aligned_cols=41  Identities=12%  Similarity=-0.059  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCC--CHHHHHHHCCCCCCCHH
Q ss_conf             699999997489048852057775--25898864123777214
Q gi|254780791|r  229 DEMIVRAIANSSIPIISAIGHETD--WTLADYAADLRAPTPTG  269 (529)
Q Consensus       229 ~e~laraI~~~~iPVisgIGHE~D--~Tl~D~VAD~Ra~TPTa  269 (529)
                      -..+.+++..||.|||.+|---.=  -...=+.+|.|..|+.+
T Consensus       136 ~~~~~~~l~~~~kP~Iaav~G~a~GgG~~l~l~cD~~i~~~~~  178 (290)
T 1q52_A          136 ILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY  178 (290)
T ss_dssp             HHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred             HHHHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCCCCHHHHH
T ss_conf             9999999984899889997675501115887631422022445


No 125
>>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:77-193)
Probab=75.32  E-value=5  Score=19.82  Aligned_cols=52  Identities=21%  Similarity=0.430  Sum_probs=38.1

Q ss_pred             CCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             842589999998630597--5899972100111103679999999974100357677758999516888
Q gi|254780791|r  154 PTGAVIRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       154 ~~~a~~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ++.+.+.+....-..++.  -..+++|..+      ++|...++.+++         +.+-+++||||.
T Consensus        42 ~~d~~~~~~~~~~~~~~~~~P~~vv~P~s~------~eV~~iv~~a~~---------~~ipv~~rggG~   95 (117)
T 2uuu_A           42 TFGKSLRDLIRVRIGQVKNAPDLIVLPHSH------EEVERLVQLAHK---------YNVVIIPMGGGS   95 (117)
T ss_dssp             TCCSSHHHHHHHHTTCCCCCCSEEECCCSH------HHHHHHHHHHHH---------HTCEEEEESSCC
T ss_pred             CCCCCHHHHHHHHCCCCCCCCCEEEECCCH------HHHHHHHHHHHH---------CCCCEEEECCCC
T ss_conf             089987899998579878998589954999------999999999998---------799689848998


No 126
>>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} (A:)
Probab=74.86  E-value=5.7  Score=19.31  Aligned_cols=77  Identities=16%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHH----------------HHCCHHHHHHHHHHCCC
Q ss_conf             111103679999999974100357677758999516888-4---442----------------20076999999974890
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDL----------------WHFNDEMIVRAIANSSI  241 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL----------------~~FN~e~laraI~~~~i  241 (529)
                      -+.....+|..+++.+....      .+-+|||.-+||. .   -|+                +.-....+...|..||.
T Consensus        30 l~~~~~~~l~~~l~~~~~d~------~~~~vvi~g~~~~~F~aG~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pk  103 (363)
T 3bpt_A           30 LTLNXIRQIYPQLKKWEQDP------ETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYXLNNAVGSCQK  103 (363)
T ss_dssp             BCHHHHHHHHHHHHHHHHCT------TCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999998499------966999965899801478387877512243321210111122334666652488


Q ss_pred             EEEEEE-------CCCCCCHHHHHHHCCCCCCCHH
Q ss_conf             488520-------5777525898864123777214
Q gi|254780791|r  242 PIISAI-------GHETDWTLADYAADLRAPTPTG  269 (529)
Q Consensus       242 PVisgI-------GHE~D~Tl~D~VAD~Ra~TPTa  269 (529)
                      |||++|       |.|     +=+.+|.|..||++
T Consensus       104 PvIa~i~G~a~GGG~e-----lala~d~ria~~~a  133 (363)
T 3bpt_A          104 PYVALIHGITXGGGVG-----LSVHGQFRVATEKC  133 (363)
T ss_dssp             CEEEEECSEEETHHHH-----TTTTSSEEEECTTC
T ss_pred             CEEEEECCCCEEECCC-----CCCCCHHHHHHCCC
T ss_conf             6787757975010220-----01241023340024


No 127
>>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} (A:1-230)
Probab=74.79  E-value=5.1  Score=19.72  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             6999999974890488520-577752-5898864123777214
Q gi|254780791|r  229 DEMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       229 ~e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      ...+.+.+..||.|||++| ||=.-- .-.=+.+|+|..++.+
T Consensus       115 ~~~~~~~~~~~~kpvIaav~G~a~GgG~~lala~D~~ia~~~a  157 (230)
T 2vx2_A          115 CSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKS  157 (230)
T ss_dssp             HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEECCCC
T ss_conf             5678888860775542674572131678887505623057887


No 128
>>3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Novosphingobium aromaticivorans DSM12444} (A:1-155,A:263-274)
Probab=74.59  E-value=5.8  Score=19.26  Aligned_cols=103  Identities=14%  Similarity=0.017  Sum_probs=53.0

Q ss_pred             CEEEEEECCCHHHHHHH--HHHHH--HCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             28999847842589999--99863--05975899972100111--10367999999997410035767775899951688
Q gi|254780791|r  146 KIIAVITSPTGAVIRDI--LQRIS--CRFPLRVIIFPVKVQGD--ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~--~~~~~--~r~p~~~~~~p~~vQG~--~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      -+||||++.++.--...  ..-+.  +.|++++.+.+..-.+.  -|...-.+|=+.-+.+    ..+.+|+|+-+|||=
T Consensus         4 D~I~vvAPSs~~~~~~~~~~~ai~~Le~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dl~~a~----~d~~v~aI~~~rGGy   79 (167)
T 3g23_A            4 RRIAICAPSTPFTREDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECA----NDDAFEAVWFVRGGY   79 (167)
T ss_dssp             EEEEEECSSSCCCHHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHH----TCTTCSEEEESCCSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHH----HCCCCCEEEECCCCC
T ss_conf             1899982899998678889989999971991898884311015853799899999999986----499989999867655


Q ss_pred             CHHHHHH-CCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             8444220-076999999974890488520577752589886
Q gi|254780791|r  220 SIEDLWH-FNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       220 S~eDL~~-FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      ..-.|-+ +.+.++.   .+.|-|+   ||+ .|+|.+=+.
T Consensus        80 ga~rlLp~l~d~~~~---~~~PK~~---iGy-SDiT~L~~a  113 (167)
T 3g23_A           80 GANRIAEDALARLGR---AASAKQY---LGY-SDAGTLLAA  113 (167)
T ss_dssp             CTHHHHHHHHTTCCG---GGGGCEE---EEC-GGGHHHHHH
T ss_pred             CHHHHHHHHCHHHHH---HCCCCEE---EEE-CHHHHHHHH
T ss_conf             787877665666687---5499879---998-678999999


No 129
>>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:275-457)
Probab=74.46  E-value=5.8  Score=19.24  Aligned_cols=121  Identities=16%  Similarity=0.186  Sum_probs=69.9

Q ss_pred             HHCCCCCCCCCCCCCC-CEEEEEECCCHHHH--HHHHHH---------------HHHCCC-EEEEEEECCCCCCCHHHHH
Q ss_conf             0122610016310265-28999847842589--999998---------------630597-5899972100111103679
Q gi|254780791|r  130 EGLFSDQHKNPIPFIP-KIIAVITSPTGAVI--RDILQR---------------ISCRFP-LRVIIFPVKVQGDECPKEI  190 (529)
Q Consensus       130 eGlfd~~~k~~lP~~p-~~i~vits~~~a~~--~D~~~~---------------~~~r~p-~~~~~~p~~vQG~~a~~~i  190 (529)
                      |.+||...-...|... .+|||||...|.+.  .|-+..               |+.-.| +--.--|.-+=|...+.-.
T Consensus         3 ~el~d~~~~l~~~~p~g~riavis~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lP~~~~~~NPiD~~~~a~~~~~   82 (183)
T 2csu_A            3 DEXLSXARAFSQPLPRGNKVAIXTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPXAAVKNPVDXIASARGEDY   82 (183)
T ss_dssp             HHHHHHHTTTTSCCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHH
T ss_conf             66999999966889999816999678348899999999869987778888998787413412302576556788897999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCEEEEECCCCC-HHHHHHCCHHHHHHHHHH--CCCEEEEEE--CCCCCCHHH
Q ss_conf             999999974100357677758999516888-444220076999999974--890488520--577752589
Q gi|254780791|r  191 ANAILQLNTLKEGRTCPRPDIIILARGGGS-IEDLWHFNDEMIVRAIAN--SSIPIISAI--GHETDWTLA  256 (529)
Q Consensus       191 ~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~eDL~~FN~e~laraI~~--~~iPVisgI--GHE~D~Tl~  256 (529)
                      ..+|+.+....      .+|+|+++=-.|+ ....|...-+.++.+...  ++.||+...  |+..|...-
T Consensus        83 ~~~l~~~~~dp------~vd~v~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~kPi~~~~~g~~~~~~~~~  147 (183)
T 2csu_A           83 YRTAKLLLQDP------NVDXLIAICVVPTFAGXTLTEHAEGIIRAVKEVNNEKPVLAXFXAGYVSEKAKE  147 (183)
T ss_dssp             HHHHHHHHHST------TCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHH
T ss_pred             HHHHHHHHCCC------CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH
T ss_conf             99999997399------989899997477656777269999999999984899978999899865199999


No 130
>>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D (A:)
Probab=74.30  E-value=5.8  Score=19.21  Aligned_cols=83  Identities=16%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH------HHHHH-----------CCHHHHHHHHHHCCCEE
Q ss_conf             01111036799999999741003576777589995168884------44220-----------07699999997489048
Q gi|254780791|r  181 VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI------EDLWH-----------FNDEMIVRAIANSSIPI  243 (529)
Q Consensus       181 vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~------eDL~~-----------FN~e~laraI~~~~iPV  243 (529)
                      .-......++..+++.+....+      +-+|||.-+|+..      .++..           -.-..+.+.+..||.||
T Consensus        47 al~~~~~~~l~~al~~~~~~~~------v~~vvltg~g~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~p~  120 (263)
T 2j5g_A           47 VFTGKTHREFPDAFYDISRDRD------NRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPV  120 (263)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTT------CCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred             CCCHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCHHH
T ss_conf             9899999999999999972999------6199986245431111100001333233322012221002222023466034


Q ss_pred             EEEECCCCC--CHHHHHHHCCCCCCCHH
Q ss_conf             852057775--25898864123777214
Q gi|254780791|r  244 ISAIGHETD--WTLADYAADLRAPTPTG  269 (529)
Q Consensus       244 isgIGHE~D--~Tl~D~VAD~Ra~TPTa  269 (529)
                      |.+|..-.=  =.-.=+.+|+|..++.+
T Consensus       121 Iaav~G~a~GgG~~lal~~D~ria~~~~  148 (263)
T 2j5g_A          121 ISAVNGAALLHSEYILTTDIILASENTV  148 (263)
T ss_dssp             EEEECSEECSCGGGGGGCSEEEEETTCE
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3022114444556664003555645433


No 131
>>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:25-152)
Probab=73.76  E-value=4.2  Score=20.50  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=35.1

Q ss_pred             CEEEEECC-CCCEECCHHHCCCCCEEEEEEECEE-EEEEEEECCCC
Q ss_conf             61999848-9889577789299986999991109-99999505788
Q gi|254780791|r  461 GYTSIQDT-NNNFITQKRNLATKTRILINFFDGQ-ANAIVINKAPP  504 (529)
Q Consensus       461 GYaiv~~~-~GkiI~s~~~l~~gd~i~i~l~DG~-v~a~V~~k~~~  504 (529)
                      |-.++.+. +|-++++..-+...+.+.+.|.||+ ..++|.+..+.
T Consensus        64 GSGfii~~d~G~IlTn~HVV~~~~~i~V~~~dg~~~~a~vv~~d~~  109 (128)
T 1ky9_A           64 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPR  109 (128)
T ss_dssp             EEEEEEETTTTEEEEEHHHHTTEEEEEEEETTSCEEEEEEEEEETT
T ss_pred             EEEEEEECCCCEEEECCEEECCCCEEEEECCCCCEEEEEEEEECCC
T ss_conf             5799997993299978009998831304737992898999972455


No 132
>>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha- beta protein, hydrolase; 2.20A {Escherichia coli} (A:21-106,A:203-219)
Probab=73.02  E-value=3.9  Score=20.79  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=36.7

Q ss_pred             CEEEEECCCCCEECCHHHCCCCCEEEEEEECEEE-EEEEEECCC
Q ss_conf             6199984898895777892999869999911099-999950578
Q gi|254780791|r  461 GYTSIQDTNNNFITQKRNLATKTRILINFFDGQA-NAIVINKAP  503 (529)
Q Consensus       461 GYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v-~a~V~~k~~  503 (529)
                      |-.++-+++|.++++..-+...+.+.+.|.||+. .++|....|
T Consensus        24 GSGfiI~~~G~ILTnaHVV~~a~~i~V~~~dg~~~~A~vv~~D~   67 (103)
T 1te0_A           24 GSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDS   67 (103)
T ss_dssp             EEEEECSTTCEEEEEHHHHTTCSEEEEECTTSCEEEEEEEEEET
T ss_pred             EEEEEEECCCEEEECCEEECCCCCCCEEECCCCCCCEEEEEEEC
T ss_conf             59999939928998830575753321340378642114666404


No 133
>>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} (A:1-221)
Probab=71.70  E-value=6.6  Score=18.73  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=46.3

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHH--------------H--CCHHHHHHHHHHCCCEE
Q ss_conf             111036799999999741003576777589995168884---4422--------------0--07699999997489048
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLW--------------H--FNDEMIVRAIANSSIPI  243 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~--------------~--FN~e~laraI~~~~iPV  243 (529)
                      ...-..++.++++.++...      .+-+||+.-+|+.+   -||.              .  ..-..+.+.+..||.||
T Consensus        29 ~~~~~~~l~~~~~~~~~d~------~v~~vi~~g~~~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~  102 (221)
T 3i47_A           29 DNQLLTEMRIRLDSAINDT------NVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPT  102 (221)
T ss_dssp             CHHHHHHHHHHHHHHHHCT------TCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CHHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             9999999999999997489------9169999156776556730444301222321110136789999999998289878


Q ss_pred             EEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             8520-577752-5898864123777214
Q gi|254780791|r  244 ISAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       244 isgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      |.+| ||-.-- ...=+.+|+|..|+.+
T Consensus       103 Iaav~G~a~GgG~~lal~~D~~ia~~~a  130 (221)
T 3i47_A          103 IAMVQGAAFGGGAGLAAACDIAIASTSA  130 (221)
T ss_dssp             EEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             EEEECCEECCCCHHHHHCCCCCCCCCCC
T ss_conf             9998998767622555052302468997


No 134
>>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} (A:1-127,A:265-275)
Probab=71.65  E-value=4.4  Score=20.34  Aligned_cols=92  Identities=15%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             CCCCEEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             26528999847842----58999999863059758999721001--1110367999999997410035767775899951
Q gi|254780791|r  143 FIPKIIAVITSPTG----AVIRDILQRISCRFPLRVIIFPVKVQ--GDECPKEIANAILQLNTLKEGRTCPRPDIIILAR  216 (529)
Q Consensus       143 ~~p~~i~vits~~~----a~~~D~~~~~~~r~p~~~~~~p~~vQ--G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R  216 (529)
                      .-+++|+||.-+.+    ..+.++.+.+.++. +++.+....-.  +..-...+...  ...        ..+|+||++=
T Consensus         3 ~~~kkv~ii~n~~~~~~~~~~~~i~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~d~vv~~G   71 (138)
T 2an1_A            3 NHFKCIGIVGHPRHPTALTTHEMLYRWLCDQG-YEVIVEQQIAHELQLKNVPTGTLA--EIG--------QQADLAVVVG   71 (138)
T ss_dssp             -CCCEEEEECC-------CHHHHHHHHHHHTT-CEEEEEHHHHHHTTCSSCCEECHH--HHH--------HHCSEEEECS
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHCCCCCCCCCCHH--HHC--------CCCCEEEEEC
T ss_conf             66968999950899799999999999999786-999980789876399888846655--725--------4776899977


Q ss_pred             CCCCHHHHHHCCHHHHHHHHHHCCCEEE-EEECCCCCC
Q ss_conf             6888444220076999999974890488-520577752
Q gi|254780791|r  217 GGGSIEDLWHFNDEMIVRAIANSSIPII-SAIGHETDW  253 (529)
Q Consensus       217 GGGS~eDL~~FN~e~laraI~~~~iPVi-sgIGHE~D~  253 (529)
                      |=|.+-        .+++.+....+||+ --.|+--++
T Consensus        72 GDGTil--------~a~~~l~~~~ipi~~Ip~Gt~n~l  101 (138)
T 2an1_A           72 GDGNML--------GAARTLARYDINVIGINRGNLGFL  101 (138)
T ss_dssp             CHHHHH--------HHHHHHTTSSCEEEEBCSSSCCSS
T ss_pred             CCCHHH--------HHHHHHCCCCCEEEEECCCCCCEE
T ss_conf             883598--------886764255745997014554325


No 135
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:1-121,A:252-293)
Probab=71.62  E-value=6.6  Score=18.72  Aligned_cols=95  Identities=15%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             528999847-842589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -..||||.+ .+..-+..+++.+..   ..++.++++.+    ...+..-.++++.+....       +|.|||.-... 
T Consensus        20 S~tIgvivpdl~~~ff~~ii~gI~~~a~~~Gy~vii~~s----~~~~e~e~~~l~~l~~~~-------vDGiIl~~~~~-   87 (163)
T 2iks_A           20 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS----EDQPDNEXRCIEHLLQRQ-------VDAIIVSTSLP-   87 (163)
T ss_dssp             CCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTT-------CSEEEECCSSC-
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHCCCCC-------CCEEEEECCCC-
T ss_conf             998999929998879999999999999986999999947----997588999876201454-------43578831433-


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             444220076999999974890488520577752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                             .++.....+.+.++|+|. |++..+..=+|.|
T Consensus        88 -------~~~~~~~~l~~~~iPvVl-id~~~~~~~~~sV  118 (163)
T 2iks_A           88 -------PEHPFYQRWANDPFPIVA-LDRALDREHFTSV  118 (163)
T ss_dssp             -------TTCHHHHTTTTSSSCEEE-EESCCCTTTCEEE
T ss_pred             -------CCHHHHHHHHCCCCCEEE-EECCCCCCCCCCC
T ss_conf             -------212577776516976899-8414433335643


No 136
>>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:1-106,A:248-291)
Probab=69.91  E-value=7.1  Score=18.43  Aligned_cols=88  Identities=18%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             CCCEEEEEEC-CCHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             6528999847-84258999999863---0597589997210011110367999999997410035767775899951688
Q gi|254780791|r  144 IPKIIAVITS-PTGAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       144 ~p~~i~vits-~~~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      =+.+||+|.+ .+..-+..++.-+.   ++.++++.++.    ++..+.+...+|+.+....       +|.||+.=.+.
T Consensus         4 ks~~Igvi~~~~~~~f~~~i~~gi~~aa~~~Gy~l~i~~----~~~d~~~~~~~i~~l~~~~-------vdgIIi~~~~~   72 (150)
T 3l49_A            4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALD----AGRNDQTQVSQIQTLIAQK-------PDAIIEQLGNL   72 (150)
T ss_dssp             TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEE----CTTCHHHHHHHHHHHHHHC-------CSEEEEESSCH
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHHHCC-------CCEEEEECCCC
T ss_conf             899999995899998999999999999997399999993----8999999999999999759-------99999927840


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             844422007699999997489048852057
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                      .       ..+.+.+...+..||||+--.+
T Consensus        73 ~-------~~~~~i~~l~~~gIPvV~i~~~   95 (150)
T 3l49_A           73 D-------VLNPWLQKINDAGIPLFTVDTA   95 (150)
T ss_dssp             H-------HHHHHHHHHHHTTCCEEEESCC
T ss_pred             H-------HHHHHHHHHHHCCCCEEECCCC
T ss_conf             3-------0589999999869919966776


No 137
>>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396)
Probab=69.59  E-value=7.2  Score=18.38  Aligned_cols=82  Identities=17%  Similarity=0.293  Sum_probs=49.4

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH--HHCCCEEEEEEC------
Q ss_conf             721001111036799999999741003576777589995168884442200769999999--748904885205------
Q gi|254780791|r  177 FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI--ANSSIPIISAIG------  248 (529)
Q Consensus       177 ~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI--~~~~iPVisgIG------  248 (529)
                      ++..+.|......+...+..+...-..   .+||+|++.      .|    -.+.+|-|+  +.+.|||+-==|      
T Consensus        83 ~~l~~~~~s~~~~~~~~~~~l~~~l~~---~~PD~VlV~------GD----~~~~La~AlaA~~~~IPvaHieaGlrs~d  149 (211)
T 3dzc_A           83 LNIMEPGQTLNGVTSKILLGMQQVLSS---EQPDVVLVH------GD----TATTFAASLAAYYQQIPVGHVEAGLRTGN  149 (211)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHH---HCCSEEEEE------TT----SHHHHHHHHHHHTTTCCEEEETCCCCCSC
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCCCC------CC----CCCCHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf             103889988999999999999998986---267645400------14----65421377776503553268504655568


Q ss_pred             ------CCCCCHHHHHHHCCC-CCCCHHHH
Q ss_conf             ------777525898864123-77721456
Q gi|254780791|r  249 ------HETDWTLADYAADLR-APTPTGAA  271 (529)
Q Consensus       249 ------HE~D~Tl~D~VAD~R-a~TPTaAA  271 (529)
                            -|...-++|-+||+- +|||.++.
T Consensus       150 ~~~g~peE~~R~~is~lA~lhF~~t~~~~~  179 (211)
T 3dzc_A          150 IYSPWPEEGNRKLTAALTQYHFAPTDTSRA  179 (211)
T ss_dssp             TTSSTTHHHHHHHHHHTCSEEEESSHHHHH
T ss_pred             CCCCCHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf             653561455422036521278623537899


No 138
>>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:)
Probab=69.23  E-value=7.3  Score=18.32  Aligned_cols=49  Identities=10%  Similarity=0.177  Sum_probs=38.0

Q ss_pred             EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEEEE
Q ss_conf             279998748947999997352105866814598899999-9667528843799999
Q gi|254780791|r   52 HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQIIIE  106 (529)
Q Consensus        52 H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~v~  106 (529)
                      .+.+.+.|+.+.|+.++|...+..+    +.|+-|.+.+ ++..|  +|.++|.+.
T Consensus        63 ~~~~~i~D~Tg~I~~tlW~~~~~~~----~~Gdvv~i~~~~v~~~--~g~~~l~~~  112 (145)
T 1wjj_A           63 IVECLIGDETGCILFTARNDQVDLM----KPGATVILRNSRIDMF--KGTMRLGVD  112 (145)
T ss_dssp             CEEEEEECSSCEEEEEECTTHHHHT----CTTCEEEEEEEEEEEE--TTEEEEEEC
T ss_pred             EEEEEEECCCCEEEEEEECCCHHHC----CCCCEEEEECEEEEEE--CCEEEEEEC
T ss_conf             9999998588869999803522005----7688999945699888--999999979


No 139
>>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* (A:)
Probab=69.02  E-value=7.4  Score=18.29  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=57.8

Q ss_pred             CEEEEEECCCHH-------------HHHHHHHHH---HHC--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             289998478425-------------899999986---305--97589997210011110367999999997410035767
Q gi|254780791|r  146 KIIAVITSPTGA-------------VIRDILQRI---SCR--FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCP  207 (529)
Q Consensus       146 ~~i~vits~~~a-------------~~~D~~~~~---~~r--~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~  207 (529)
                      .+|-||-.|+=.             -+.||...+   ...  +.+++..|-+=.-|     +|+..|..+-..       
T Consensus        10 ~~IlviNGPNLn~LG~ReP~iYG~~Tl~~i~~~~~~~a~~~g~~vei~~~QSN~EG-----elId~i~~a~~~-------   77 (176)
T 2c4w_A           10 MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEG-----EIIDKIQESVGS-------   77 (176)
T ss_dssp             EEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHH-----HHHHHHHHHHSS-------
T ss_pred             CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH-----HHHHHHHHHHCC-------
T ss_conf             87999858880105887886488469999999999999981896100247777899-----999999997079-------


Q ss_pred             CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             77589995168884442200769999999748904885
Q gi|254780791|r  208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      ++|.|||==||      |..-+..+..|+..+++|+|-
T Consensus        78 ~~dgiIINpgA------yTHtSiAl~DAl~~~~~P~VE  109 (176)
T 2c4w_A           78 EYEGIIINPGA------FSHTSIAIADAIMLAGKPVIE  109 (176)
T ss_dssp             SCCEEEEECGG------GGGTCHHHHHHHHTSSSCEEE
T ss_pred             CCEEEEECCHH------HEEEEEEHHHHHHHCCCCEEE
T ss_conf             82289955536------324110128788633997899


No 140
>>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:146-325)
Probab=68.79  E-value=7.5  Score=18.25  Aligned_cols=86  Identities=27%  Similarity=0.291  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCEEE-----------EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH
Q ss_conf             99999765401226100163102652899-----------9847842589999998630597589997210011110367
Q gi|254780791|r  121 EKRKKKLLEEGLFSDQHKNPIPFIPKIIA-----------VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKE  189 (529)
Q Consensus       121 e~lk~~L~~eGlfd~~~k~~lP~~p~~i~-----------vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~  189 (529)
                      +++.++|-.+-+|..    +   +||..|           .+..-.+....|++.|+.+   +             ++.+
T Consensus        78 ~~ll~~ll~~pff~~----~---pPKStgrE~F~~~~~~~~l~~~~~ls~~D~~aTlt~---~-------------TA~s  134 (180)
T 3cqy_A           78 PQLLAQLLSHPYFSL----A---YPKSTGRELFNQAWLEQQLSAFNQLNEEDIQSTLLD---L-------------TCHS  134 (180)
T ss_dssp             HHHHHHHHTCGGGGS----C---SSCCCCSSSSSHHHHHHHTTTCTTSCHHHHHHHHHH---H-------------HHHH
T ss_pred             HHHHHHHHHHHHCCC----C---CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---H-------------HHHH
T ss_conf             899999987442025----7---765424555445432443201245782025567888---9-------------9999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCC-CEEEE
Q ss_conf             999999997410035767775899951688844422007699999997489-04885
Q gi|254780791|r  190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSS-IPIIS  245 (529)
Q Consensus       190 i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~-iPVis  245 (529)
                      |++++..+..         +|- |++=|||+      .|..-+-+--..++ ++|.+
T Consensus       135 I~~~~~~~~~---------~~~-v~v~GGGa------~N~~Lm~~L~~~l~~~~v~~  175 (180)
T 3cqy_A          135 IAQDILKLAQ---------EGE-LFVCGGGA------FNAELXQRLAALLPGYRIDT  175 (180)
T ss_dssp             HHHHHHHHCS---------SEE-EEEESGGG------GCHHHHHHHHHHCTTEEEEE
T ss_pred             HHHHHHHHCC---------CCC-EEEECCCC------CCHHHHHHHHHHCCCCEEEE
T ss_conf             8755554135---------672-38966875------68999999997678985742


No 141
>>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A (A:295-407,A:484-593)
Probab=68.63  E-value=7.3  Score=18.35  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHH
Q ss_conf             1111036799999999741003576777589995168884442200769999999748904885205777--52589886
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHET--DWTLADYA  259 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~--D~Tl~D~V  259 (529)
                      -+.....+|.++|+.++.....    ++=++-+=-.||++.....+  ....+.+.+++.|||+.++.-.  ==..+=+.
T Consensus        25 ~~~~~~~~l~~~l~~~~~d~~v----k~vvl~~~s~Ggdv~~~~~i--~~~~~~~~~~~kpvva~~~g~a~sgG~~ia~a   98 (223)
T 3bf0_A           25 QGNVGGDTTAAQIRDARLDPKV----KAIVLRVNSPGGSVTASEVI--RAELAAARAAGKPVVVSMGGMAASGGYWISTP   98 (223)
T ss_dssp             TTSEEHHHHHHHHHHHHHCTTE----EEEEEEEEEEEECHHHHHHH--HHHHHHHHHTTCCEEEEEEEEEETHHHHTTTT
T ss_pred             CCCCCCHHHHHHHHHHHHCCCC----EEEEEEECCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHC
T ss_conf             6766627789999877506664----49999963998666799999--99999998659977999678243120476535


Q ss_pred             HCCCCCCCHH
Q ss_conf             4123777214
Q gi|254780791|r  260 ADLRAPTPTG  269 (529)
Q Consensus       260 AD~Ra~TPTa  269 (529)
                      ||.+..+|++
T Consensus        99 ~D~iva~~~s  108 (223)
T 3bf0_A           99 ANYIVANPST  108 (223)
T ss_dssp             CSEEEECTTC
T ss_pred             CCEEECCCCC
T ss_conf             6802228865


No 142
>>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} (A:1-243)
Probab=68.57  E-value=7.5  Score=18.22  Aligned_cols=79  Identities=13%  Similarity=0.125  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-------HHHHHHC--------------CHHHHHHHHHHCCCEE
Q ss_conf             103679999999974100357677758999516888-------4442200--------------7699999997489048
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-------IEDLWHF--------------NDEMIVRAIANSSIPI  243 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-------~eDL~~F--------------N~e~laraI~~~~iPV  243 (529)
                      ....++..+++.+....      .+-+||+.-+|..       .+++..+              .-..+..++..||.|+
T Consensus        30 ~~~~~l~~~l~~~~~d~------~v~~vVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~  103 (243)
T 1nzy_A           30 KAMQEVTDALNRAEEDD------SVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV  103 (243)
T ss_dssp             HHHHHHHHHHHHHHHCT------TCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             HHHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             99999999999998687------937999979998725885588765123543204677888888999999999689989


Q ss_pred             EEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             8520-57775-25898864123777214
Q gi|254780791|r  244 ISAI-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       244 isgI-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      |++| ||=.- =...-+.+|.|..++.+
T Consensus       104 Iaai~G~a~GgG~~la~~~D~ria~~~a  131 (243)
T 1nzy_A          104 LAAINGVAAGGGLGISLASDMAICADSA  131 (243)
T ss_dssp             EEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             EEEECCCCCCCCCEEEHHCCHHHHHHHC
T ss_conf             9986785465553302410476660202


No 143
>>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure initiative; 2.00A {Rhodopseudomonas palustris} (A:1-210)
Probab=68.14  E-value=5.2  Score=19.65  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             CHHHHHHHHHHCCCEEEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf             76999999974890488520-57775-25898864123777214
Q gi|254780791|r  228 NDEMIVRAIANSSIPIISAI-GHETD-WTLADYAADLRAPTPTG  269 (529)
Q Consensus       228 N~e~laraI~~~~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPTa  269 (529)
                      .-..+...+..||.|||++| ||=.= -...=+.+|+|..++.+
T Consensus        94 ~~~~l~~~~~~~~kp~Iaav~G~a~GgG~~l~l~~D~~ia~~~a  137 (210)
T 3hin_A           94 TWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASA  137 (210)
T ss_dssp             HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCEEHHHHHHHHCCCCCCH
T ss_conf             57888877520574089998541235252221100121322120


No 144
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:1-111,A:250-293)
Probab=68.00  E-value=7.7  Score=18.13  Aligned_cols=85  Identities=9%  Similarity=0.156  Sum_probs=56.8

Q ss_pred             CCCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             6528999847-842589999998630---597589997210011110367999999997410035767775899951688
Q gi|254780791|r  144 IPKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       144 ~p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      -..+||||.+ .+..-+..++.-+.+   +..+.++++.    ++.-+..-.++|+.+...       ++|.|||.=.++
T Consensus         7 ks~tIgvIi~~~~npf~~~i~~gi~~~a~~~Gy~lii~~----~~~d~~~q~~~i~~li~~-------~vdGiII~p~~~   75 (155)
T 3l6u_A            7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVAT----SQNSRISEREQILEFVHL-------KVDAIFITTLDD   75 (155)
T ss_dssp             --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE----CSSCHHHHHHHHHHHHHT-------TCSEEEEECSCT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHHHC-------CCCEEEECCCCC
T ss_conf             999899999789879999999999999998799899997----999989999999999976-------998999715663


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             844422007699999997489048852
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                      .       ........+.+..||||.=
T Consensus        76 ~-------~~~~~l~~L~~~gIPvV~i   95 (155)
T 3l6u_A           76 V-------YIGSAIEEAKKAGIPVFAI   95 (155)
T ss_dssp             T-------TTHHHHHHHHHTTCCEEEE
T ss_pred             H-------HHHHHHHHHHHCCCEEEEE
T ss_conf             0-------1599999999769929998


No 145
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283)
Probab=67.82  E-value=7.8  Score=18.10  Aligned_cols=98  Identities=10%  Similarity=0.122  Sum_probs=58.7

Q ss_pred             CEEEEEECCC-HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             2899984784-2589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSPT-GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~~-~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      |+||||.+.. .--+..++..+.+   +.++++.++++.-    .+..-...|..+-..       ++|.||+.=...+.
T Consensus         2 ktIgii~~~~~~~f~~~ii~gi~~aa~~~G~~l~i~~~~~----~~~~e~~~i~~ll~~-------~vdgIIi~~~~~~~   70 (150)
T 2ioy_A            2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQN----DSSKELSNVEDLIQQ-------KVDVLLINPVDSDA   70 (150)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTT----CHHHHHHHHHHHHHT-------TCSEEEECCSSTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHH-------CCCCCCCCCCCCCC
T ss_conf             2999985789898999999999999997599999993899----999999999999862-------32334456632222


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             4422007699999997489048852057775258988641
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD  261 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD  261 (529)
                             ...+...+.+..||||+==.+..+....-+|.|
T Consensus        71 -------~~~~~~~l~~~gIPvV~id~~~~~~~~~~~v~~  103 (150)
T 2ioy_A           71 -------VVTAIKEANSKNIPVITIDRSANGGDVVCHIAS  103 (150)
T ss_dssp             -------THHHHHHHHHTTCCEEEESSCCSSSCCSEEEEE
T ss_pred             -------CCCCCHHHHCCCCEEEEEECCCCCCCCCEEEEE
T ss_conf             -------210000233157528998157788886729974


No 146
>>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:1-95)
Probab=67.79  E-value=2.7  Score=22.14  Aligned_cols=58  Identities=19%  Similarity=0.118  Sum_probs=38.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCC-E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             999847842589999998630597-5-899972100111103679999999974100357677758999516888
Q gi|254780791|r  148 IAVITSPTGAVIRDILQRISCRFP-L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       148 i~vits~~~a~~~D~~~~~~~r~p-~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ++-...++.+.+.+....-..+|. . ..++||...      .+|.++++.+++         .++-+++||||.
T Consensus        17 ~~~~~~~~d~~~~~~~~~~~~~~~~~P~~Vv~P~s~------~eV~~vv~~~~~---------~~i~v~~rggG~   76 (95)
T 1zr6_A           17 DVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRST------EDIAAAVQCGLD---------AGVQISAKGGGH   76 (95)
T ss_dssp             TCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSH------HHHHHHHHHHHH---------HTCCEEEESSCC
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCC
T ss_conf             727879986417888767752558995089964989------999999999998---------797599986997


No 147
>>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:1-235)
Probab=67.72  E-value=7.8  Score=18.09  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCCHHHHH
Q ss_conf             11110367999999997410035767775899951688844422007699---999997489048852057775258988
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDWTLADY  258 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~Tl~D~  258 (529)
                      .|.=-.+.+.+-++..-..       .+|-|++   +|+...-|.+..|+   +++...+..+|||.|||+..-...+++
T Consensus        41 dg~iD~~~~~~~i~~l~~~-------Gv~gi~v---~G~tGE~~~Lt~eEr~~~v~~~~~~~~pvi~gv~~~~t~~~i~~  110 (235)
T 2hmc_A           41 DRTPDFDALVRKGKELIAD-------GXSAVVY---CGSXGDWPLLTDEQRXEGVERLVKAGIPVIVGTGAVNTASAVAH  110 (235)
T ss_dssp             TSSBCHHHHHHHHHHHHHT-------TCCCEEE---SSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHC-------CCCEEEE---CEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf             8782999999999999977-------9999997---83375723089999999999874157751004420137788888


Q ss_pred             HHCC
Q ss_conf             6412
Q gi|254780791|r  259 AADL  262 (529)
Q Consensus       259 VAD~  262 (529)
                      +-+.
T Consensus       111 a~~A  114 (235)
T 2hmc_A          111 AVHA  114 (235)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             8789


No 148
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265)
Probab=67.56  E-value=7.9  Score=18.06  Aligned_cols=91  Identities=11%  Similarity=0.037  Sum_probs=60.0

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -..||||+.. +...+.++++-+.+   ..++.++++.+.-..+ ......++|+.+...       ++|.||+.=.   
T Consensus         8 S~tIgviip~~~~~f~~~ii~gi~~~a~~~gy~lii~~~~~~~~-~~~~~~~~i~~l~~~-------~vDGiIi~~~---   76 (132)
T 2rgy_A            8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGEST-PREQALEAVRFLIGR-------DCDGVVVISH---   76 (132)
T ss_dssp             CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSC-HHHHHHHHHHHHHHT-------TCSEEEECCS---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CHHHHHHHHHHHHHC-------CCCEEEEECC---
T ss_conf             99799992898788999999999999998699799996889864-199999999999856-------9998985223---


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             444220076999999974890488520577752
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                            ..+....+.+.+..||+|. ||.+.|-
T Consensus        77 ------~~~~~~i~~l~~~~IPvV~-id~~~~~  102 (132)
T 2rgy_A           77 ------DLHDEDLDELHRXHPKXVF-LNRAFDA  102 (132)
T ss_dssp             ------SSCHHHHHHHHHHCSSEEE-ESSCCTT
T ss_pred             ------CCCHHHHHHHHHCCCCCEE-EEECCCC
T ss_conf             ------2104789987403764203-5203432


No 149
>>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A (A:)
Probab=67.49  E-value=7.1  Score=18.45  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCCHH--------HHHHHHHHCCCEEEEEE-CCCCCC
Q ss_conf             36799999999741003576777589995168884----442200769--------99999974890488520-577752
Q gi|254780791|r  187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFNDE--------MIVRAIANSSIPIISAI-GHETDW  253 (529)
Q Consensus       187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN~e--------~laraI~~~~iPVisgI-GHE~D~  253 (529)
                      ..++..++..++...+      +- +||.+|+|-.    -|+..+.+.        .+..+++.||.|||.+| ||-.--
T Consensus        32 ~~~l~~~l~~~~~d~~------~~-~vil~g~~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~Iaai~G~a~gg  104 (243)
T 2q35_A           32 VEGLRHCFSVVAQNQQ------YK-VVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGG  104 (243)
T ss_dssp             HHHHHHHHHHHHHCTT------CC-EEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEETH
T ss_pred             HHHHHHHHHHHHHCCC------CE-EEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf             9999999999975999------35-9998176322122366777640343422222232323346345543332035343


Q ss_pred             -HHHHHHHCCCCCCCHH
Q ss_conf             -5898864123777214
Q gi|254780791|r  254 -TLADYAADLRAPTPTG  269 (529)
Q Consensus       254 -Tl~D~VAD~Ra~TPTa  269 (529)
                       ...=+.+|.|..||++
T Consensus       105 G~~lala~D~ri~~~~~  121 (243)
T 2q35_A          105 GLLLGLYADFVVFSQES  121 (243)
T ss_dssp             HHHHHHTSSEEEEESSS
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             44320034310001244


No 150
>>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:1-102,A:224-275)
Probab=67.14  E-value=8  Score=18.00  Aligned_cols=103  Identities=13%  Similarity=0.093  Sum_probs=67.7

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      +.||||.+. +..-+.++++-+.+   +.++.++++++    .+.+..-.+.++.+...       ++|.||+.=..   
T Consensus         4 ~~Igvi~~~~~~~f~~~i~~gi~~~a~~~gy~~~i~~~----~~~~~~~~~~i~~l~~~-------~vdGiIi~~~~---   69 (154)
T 3d8u_A            4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS----DYSIEQEEKLLSTFLES-------RPAGVVLFGSE---   69 (154)
T ss_dssp             CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC----TTCHHHHHHHHHHHHTS-------CCCCEEEESSC---
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHH-------CCCEEEEECCC---
T ss_conf             59999918887779999999999999986998999968----99989999999999970-------99878730121---


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHH
Q ss_conf             442200769999999748904885205777525898864123777214
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTG  269 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTa  269 (529)
                            .+......+.+..+|+|. +|...+..-+|+|...-.|.=|-
T Consensus        70 ------~~~~~~~~l~~~~iP~V~-~~~~~~~~~~~~V~~~~~P~LTT  110 (154)
T 3d8u_A           70 ------HSQRTHQLLEASNTPVLE-IAELSSKASYLNIGVHAYPSLTS  110 (154)
T ss_dssp             ------CCHHHHHHHHHHTCCEEE-ESSSCSSSSSEEECBTSSSCCEE
T ss_pred             ------CHHHHHHHHHHCCCCCEE-CCCCCCCCCCCEEEEHCCCCCEE
T ss_conf             ------015799999852886200-01123578888886316899449


No 151
>>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} (A:1-102,A:213-228)
Probab=66.94  E-value=8.1  Score=17.97  Aligned_cols=86  Identities=22%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCC-------CEEEEEEECCC----------CCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             2899984784258999999863059-------75899972100----------111103679999999974100357677
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRF-------PLRVIIFPVKV----------QGDECPKEIANAILQLNTLKEGRTCPR  208 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~-------p~~~~~~p~~v----------QG~~a~~~i~~ai~~~~~~~~~~~~~~  208 (529)
                      |+||||..-+-.+=.+|.+.+.++.       ...++++..+.          +++...+.+.++++...+.+       
T Consensus         2 K~IGIIGGmGp~AT~~yy~~I~~~~~a~~d~~~~~~ii~s~~~~~~r~~~~~~~~~~~~~~L~~~~~~L~~aG-------   74 (118)
T 1jfl_A            2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECG-------   74 (118)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHHHHHHHHHHHHHHT-------
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC-------
T ss_conf             8899962779799999999999999875488788288885797778888861245779999999999999769-------


Q ss_pred             CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             758999516888444220076999999974890488520
Q gi|254780791|r  209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI  247 (529)
                      +|.++|+=    -.==++|++     --..+++|+|+-.
T Consensus        75 ad~ivi~c----NTaH~~~d~-----i~~~~~iPllh~~  104 (118)
T 1jfl_A           75 ADFIIMPC----NTAHAFVED-----IRKAIKIPIISPM  104 (118)
T ss_dssp             CSEEECSC----TGGGGGHHH-----HHHHCSSCBCCHH
T ss_pred             CCEEEEEC----HHHHHHHHH-----HHHHCCCCCCCCH
T ss_conf             99999955----279999999-----9997189961359


No 152
>>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} (A:1-211,A:433-504)
Probab=66.85  E-value=8.1  Score=17.95  Aligned_cols=109  Identities=16%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEECC-CHHHHHHHHHHH----HHCCC-EEEEEEE---------------------------CCCCCCC---
Q ss_conf             0265289998478-425899999986----30597-5899972---------------------------1001111---
Q gi|254780791|r  142 PFIPKIIAVITSP-TGAVIRDILQRI----SCRFP-LRVIIFP---------------------------VKVQGDE---  185 (529)
Q Consensus       142 P~~p~~i~vits~-~~a~~~D~~~~~----~~r~p-~~~~~~p---------------------------~~vQG~~---  185 (529)
                      -.-++|||||||- ...+++.+++-+    +..++ .+++-|.                           +..-|..   
T Consensus        69 ~~~~~rIgIv~sGG~aPG~NnVI~gi~~~l~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~i~~~~n~GGt~l~~Srr~~  148 (283)
T 2f48_A           69 FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTK  148 (283)
T ss_dssp             CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEEECCCCCC
T ss_conf             78987799978278718899999999999998689989999864158865899899998998468717991710799999


Q ss_pred             --HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             --036799999999741003576777589995168884442200769999999748904885205777525898864123
Q gi|254780791|r  186 --CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR  263 (529)
Q Consensus       186 --a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R  263 (529)
                        .++..-++++.+.+++       .|.+|++=|-||..+-....++-..   ..++++|| ||-.-+|-       |+.
T Consensus       149 ~~~~e~~~~i~~~l~~l~-------Id~LviIGGdgS~t~A~~LaE~~~~---~~~~i~VI-GVPKTIDN-------DL~  210 (283)
T 2f48_A          149 IETEEHYNKALFVAKENN-------LNAIIIIGGDDSNTNAAILAEYFKK---NGENIQVI-GVPKTIDA-------DLR  210 (283)
T ss_dssp             CCSHHHHHHHHHHHHHTT-------CSEEEEEESHHHHHHHHHHHHHHHH---TTCCCEEE-EEEEETTC-------CCC
T ss_pred             CCCHHHHHHHHHHHHHCC-------CCEEEEECCHHHHHHHHHHHHHHHH---CCCCCEEE-EEECCCCC-------CCC
T ss_conf             767788999999998718-------8879995888999999999999997---08995089-72032146-------757


Q ss_pred             CCCCH
Q ss_conf             77721
Q gi|254780791|r  264 APTPT  268 (529)
Q Consensus       264 a~TPT  268 (529)
                      -..||
T Consensus       211 ~~~Ps  215 (283)
T 2f48_A          211 NAFPS  215 (283)
T ss_dssp             CSCCC
T ss_pred             CCCCC
T ss_conf             68999


No 153
>>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} (A:1-143,A:311-332)
Probab=66.17  E-value=8.3  Score=17.85  Aligned_cols=104  Identities=14%  Similarity=0.151  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEECCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             02652899984784---258999999863059758999721001111036799999999741003576777589995168
Q gi|254780791|r  142 PFIPKIIAVITSPT---GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       142 P~~p~~i~vits~~---~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      ...++++.||-.+.   +.+...+...+.. +.+.+.+|.+.-.+  -..++   ++.+...       .+|+||++=|-
T Consensus        26 ~~~~~~~~vivNp~SG~~~~~~~i~~~l~~-~g~~~~v~~t~~~~--~~~~~---~~~~~~~-------~~d~Ivi~GGD   92 (165)
T 2bon_A           26 MAEFPASLLILNGKSTDNLPLREAIMLLRE-EGMTIHVRVTWEKG--DAARY---VEEARKF-------GVATVIAGGGD   92 (165)
T ss_dssp             ----CCEEEEECSSSTTCHHHHHHHHHHHT-TTCCEEEEECCSTT--HHHHH---HHHHHHH-------TCSEEEEEESH
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEECCCCH--HHHHH---HHHHHHC-------CCCEEEEECCC
T ss_conf             456996799987876788549999999997-79869999648805--79999---9999877-------99999999886


Q ss_pred             CCHHHHHHCCHHHHHHHHHHCCC----E-EEEEECCCCCCHHHHHHHCCCCCC-CHHHH
Q ss_conf             88444220076999999974890----4-885205777525898864123777-21456
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIANSSI----P-IISAIGHETDWTLADYAADLRAPT-PTGAA  271 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~~~i----P-VisgIGHE~D~Tl~D~VAD~Ra~T-PTaAA  271 (529)
                      |++-+        ++..++.+..    | .|-.-|     |--||.=++..++ |..|.
T Consensus        93 GTi~~--------vl~~l~~~~~~~~~~i~iiP~G-----T~N~fA~~Lg~~~~~~~al  138 (165)
T 2bon_A           93 GTINE--------VSTALIQCEGDDIPALGILPLG-----TANDFATSVGIPEALDKAL  138 (165)
T ss_dssp             HHHHH--------HHHHHHHCCSSCCCEEEEEECS-----SSCHHHHHTTCCSSHHHHH
T ss_pred             CHHHH--------HHHHHHHCCCCCCCEEEEEECC-----CCCCCHHHCCCCCCHHHHH
T ss_conf             88999--------9999874165679738997478-----6141214359999989999


No 154
>>3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A (A:1-210)
Probab=66.13  E-value=5.4  Score=19.50  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC--CHHHHHH
Q ss_conf             11103679999999974100357677758999-51688844422007699999997489048852057775--2589886
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIIL-ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETD--WTLADYA  259 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii-~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D--~Tl~D~V  259 (529)
                      ......++.++|+.+....+      ..|||+ ..|||.....  +.-..+.+++..++.|||+.+.--.-  -+.+=..
T Consensus        20 ~~~~~~~l~~~l~~~~~d~~------~~vvi~~~~~g~~~~g~--d~~~~~~~~l~~~~~~via~~~G~a~~~g~~la~~   91 (210)
T 3bpp_A           20 TSYTYDQFDRYITIAEQDNA------EAIIIELDTPGGRADAM--MNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALG   91 (210)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC------SEEEEEEEBSCBCHHHH--HHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCHHHH--HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             87999999999999986899------76999967997427769--99999998741366532565323235678999873


Q ss_pred             HCCCCCCCHHH
Q ss_conf             41237772145
Q gi|254780791|r  260 ADLRAPTPTGA  270 (529)
Q Consensus       260 AD~Ra~TPTaA  270 (529)
                      +|.|..+|.+.
T Consensus        92 ~d~~~~~~~a~  102 (210)
T 3bpp_A           92 SHLIAMAPGTS  102 (210)
T ss_dssp             SSEEEECTTCE
T ss_pred             CCHHHHCCCEE
T ss_conf             58000010234


No 155
>>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} (A:1-227)
Probab=66.07  E-value=8.3  Score=17.84  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHH----------------CC--HHHHHHHHHHCCC
Q ss_conf             1036799999999741003576777589995168884-----44220----------------07--6999999974890
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWH----------------FN--DEMIVRAIANSSI  241 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~----------------FN--~e~laraI~~~~i  241 (529)
                      .-..++..++..++...      .+- +||.+|.|..     .|+..                |.  -..+..++..||.
T Consensus        35 ~~~~~l~~al~~~~~d~------~v~-~vil~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  107 (227)
T 3gkb_A           35 TMMRELRTVLTTLADDS------SVR-VIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQ  107 (227)
T ss_dssp             HHHHHHHHHHHHHHTCT------TCC-EEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHCC------CCE-EEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999997399------936-99996445554213567766654101000112227778899999999995742


Q ss_pred             EEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             488520-577752-5898864123777214
Q gi|254780791|r  242 PIISAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       242 PVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      |||++| ||=.-- ...=+.+|+|..|+.+
T Consensus       108 p~Iaav~G~a~GgG~~lala~D~~ia~~~a  137 (227)
T 3gkb_A          108 VTIVKLAGKARGGGAEFVAAADMAFAAAET  137 (227)
T ss_dssp             EEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             101023443334444431111122323312


No 156
>>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} (A:)
Probab=66.06  E-value=8.3  Score=17.83  Aligned_cols=78  Identities=18%  Similarity=0.328  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHH-------------HHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             10367999999997410035767775899951688-84---442-------------20076999999974890488520
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDL-------------WHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL-------------~~FN~e~laraI~~~~iPVisgI  247 (529)
                      ....+|..+++.++....      +- +||.+|+| .+   -||             +...-..+...+..||.|||++|
T Consensus        43 ~~~~~l~~~l~~~~~d~~------~~-~vv~~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav  115 (257)
T 1szo_A           43 TAHDELAYCFHDIACDRE------NK-VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAV  115 (257)
T ss_dssp             HHHHHHHHHHHHHHHCTT------CC-EEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEE
T ss_conf             999999999999974999------63-99985245432334213443111222110000000011222322221001466


Q ss_pred             -CCCCCCH-HHHHHHCCCCCCCHH
Q ss_conf             -5777525-898864123777214
Q gi|254780791|r  248 -GHETDWT-LADYAADLRAPTPTG  269 (529)
Q Consensus       248 -GHE~D~T-l~D~VAD~Ra~TPTa  269 (529)
                       ||=.--- -.=+.+|.|..+..+
T Consensus       116 ~G~a~ggG~~lal~~D~ria~~~a  139 (257)
T 1szo_A          116 NGPVTNAPEIPVMSDIVLAAESAT  139 (257)
T ss_dssp             CSCBCSSTHHHHTSSEEEEETTCE
T ss_pred             ECCCCEECCCCCCCCCCCCCCCCE
T ss_conf             134312123333322244677641


No 157
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271)
Probab=65.76  E-value=8.4  Score=17.79  Aligned_cols=90  Identities=12%  Similarity=0.193  Sum_probs=58.1

Q ss_pred             CEEEEEECCC-HHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             2899984784-258999999863---059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSPT-GAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~~-~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      .+||||.+.. ..-+..+.+-+.   +++++++.++++.-    .+..-.++++.+...       ++|.||+.=.++..
T Consensus         2 ~tIgvi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~----~~~~~~~~i~~li~~-------~vdgiIi~~~~~~~   70 (139)
T 2dri_A            2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN----NPAKELANVQDLTVR-------GTKILLINPTDSDA   70 (139)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTT----CHHHHHHHHHHHTTT-------TEEEEEECCSSTTT
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCCCCCCCCCCCC
T ss_conf             8899992889898999999999999998599899995899----999999999999861-------87644321222223


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             44220076999999974890488520577752
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                             ...+.+...+..||||+-=.+..+.
T Consensus        71 -------~~~~l~~l~~~gIPvV~id~~~~~~   95 (139)
T 2dri_A           71 -------VGNAVKMANQANIPVITLDRQATKG   95 (139)
T ss_dssp             -------THHHHHHHHHTTCCEEEESSCCSSS
T ss_pred             -------CHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             -------1689999986377532356555545


No 158
>>3fdx_A Putative filament protein / universal stress protein F; structural genomics, APC60640.1, PSI-2, protein structure initiative; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* (A:)
Probab=65.71  E-value=8.4  Score=17.78  Aligned_cols=54  Identities=15%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH-HCCHHHHHHHHHHCCCEEEE
Q ss_conf             10011110367999999997410035767775899951688844422-00769999999748904885
Q gi|254780791|r  179 VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW-HFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       179 ~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~-~FN~e~laraI~~~~iPVis  245 (529)
                      ..+.......+|++..+..          ++|+||+++.|-+..+.+ .=+.+   +-+-.+|.||+.
T Consensus        87 ~~v~~g~~~~~i~~~a~~~----------~~dliVlG~~~~~~~~~~~gs~~~---~v~~~~~~pVlv  141 (143)
T 3fdx_A           87 FHVAEGSPKDKILALAKSL----------PADLVIIASHRPDITTYLLGSNAA---AVVRHAECSVLV  141 (143)
T ss_dssp             EEEEESCHHHHHHHHHHHT----------TCSEEEEESSCTTCCSCSSCHHHH---HHHHHCSSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCCCCHHH---HHHHCCCCCEEE
T ss_conf             9996288789999999871----------678899737889866660286999---999639999999


No 159
>>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:1-116,A:212-240)
Probab=65.43  E-value=4.7  Score=20.08  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             CCEEEEEECCCH-HHHHHHHHHHHH-CCCE-EEEEEECCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             528999847842-589999998630-5975-89997210011110-3679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSPTG-AVIRDILQRISC-RFPL-RVIIFPVKVQGDEC-PKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~~~-a~~~D~~~~~~~-r~p~-~~~~~p~~vQG~~a-~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -.+||+|+..+- .+=.||-+.+-. .+.. .+.+-++.+.+-.. ..++..|.+.+...       .+|+|+.+-=-||
T Consensus         6 r~rIGlIvPstn~tiE~E~~~l~PGV~~h~sRi~~~~vt~e~l~~m~~~l~~Aa~~L~~a-------~~DvVvygCTSgS   78 (145)
T 3ixl_A            6 TPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQ-------GAAVVSLMCTSLS   78 (145)
T ss_dssp             CCEEEEEESSTTCCCCTHHHHHCTTSCEEEEECCCCCSSHHHHHHHGGGHHHHHHHHHHT-------TEEEEEECCHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-------CCCEEEECCCHHH
T ss_conf             980689978988614699998658986672347789989789999999999999986147-------9999998474798


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             444220076999999974890488520
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgI  247 (529)
                      +-.=+.++.+.+.+--....+|++|..
T Consensus        79 ~v~G~~~~~~l~~~l~~~~g~pv~t~~  105 (145)
T 3ixl_A           79 FYRGAAFNAALTVAMREATGLPCTTMS  105 (145)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSCEEEHH
T ss_pred             HHCCCHHHHHHHHHHHHCCCCCEECHH
T ss_conf             751706899999998753699863679


No 160
>>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* (A:1-211)
Probab=65.27  E-value=5  Score=19.79  Aligned_cols=79  Identities=11%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------CCCHHHHHHC-------------CH--HHHHHHHHHCCC
Q ss_conf             1103679999999974100357677758999516-------8884442200-------------76--999999974890
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARG-------GGSIEDLWHF-------------ND--EMIVRAIANSSI  241 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG-------GGS~eDL~~F-------------N~--e~laraI~~~~i  241 (529)
                      ..-..++..++..++...+      + .+||.+|       ||....+..+             .+  ..+...+..||.
T Consensus        35 ~~~~~~l~~~~~~~~~d~~------v-~~vvl~g~g~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  107 (211)
T 2j5i_A           35 PTLNREMIDVLETLEQDPA------A-GVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAK  107 (211)
T ss_dssp             HHHHHHHHHHHHHHHTCTT------E-EEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSS
T ss_pred             HHHHHHHHHHHHHHHHCCC------C-EEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999973999------5-29999645432112102788864012340355543345677899999986278


Q ss_pred             EEEEEEC-CCC-CCHHHHHHHCCCCCCCHH
Q ss_conf             4885205-777-525898864123777214
Q gi|254780791|r  242 PIISAIG-HET-DWTLADYAADLRAPTPTG  269 (529)
Q Consensus       242 PVisgIG-HE~-D~Tl~D~VAD~Ra~TPTa  269 (529)
                      |||++|- |=. ==...=+.+|.|..+.++
T Consensus       108 p~Ia~v~G~a~GgG~~la~~~D~~ia~~~a  137 (211)
T 2j5i_A          108 PTIAMVNGWCFGGGFSPLVACDLAICADEA  137 (211)
T ss_dssp             CEEEEECSCEEGGGHHHHHHSSEEEEETTC
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCEECCCC
T ss_conf             779845887655444000245400565787


No 161
>>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} (A:)
Probab=65.19  E-value=8.5  Score=17.76  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             1036799999999741003576777589995168-884442200769999999748904885
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      .....|++..+..          ++|+||+++-| +.++.. .|. -..-+-+-.++.||+.
T Consensus       107 ~~~~~I~~~a~~~----------~~dliVlG~~~~~~~~~~-~~G-s~~~~il~~~~~pVlv  156 (162)
T 1mjh_A          107 IPHEEIVKIAEDE----------GVDIIIMGSHGKTNLKEI-LLG-SVTENVIKKSNKPVLV  156 (162)
T ss_dssp             CHHHHHHHHHHHT----------TCSEEEEESCCSSCCTTC-SSC-HHHHHHHHHCCSCEEE
T ss_pred             CHHHHHHHHHHCC----------CCCEEEEECCCCCCCCCC-CCC-CHHHHHHHCCCCCEEE
T ss_conf             6899998886315----------678799806899865446-107-4999999618998999


No 162
>>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A (A:1-128)
Probab=65.17  E-value=8.6  Score=17.70  Aligned_cols=82  Identities=15%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      +||-||-.  .....+.+..+-..|++++....+.          -.|+..++..       .||+||+=      -+|-
T Consensus         1 krILiVDd--~~~~~~~l~~~l~~~g~~v~~a~s~----------~~al~~l~~~-------~~dliilD------~~lp   55 (128)
T 3dzd_A            1 KRVLVVDD--EESITSSLSAILEEEGYHPDTAKTL----------REAEKKIKEL-------FFPVIVLD------VWXP   55 (128)
T ss_dssp             CEEEEECS--CHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHHHHHB-------CCSEEEEE------SEET
T ss_pred             CEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHC-------CCCEEEEE------CCCC
T ss_conf             96999928--9999999999999779989997999----------9999998717-------99999997------9899


Q ss_pred             HCCHHHHHHHHHHC--CCE--EEEEECCCCC
Q ss_conf             00769999999748--904--8852057775
Q gi|254780791|r  226 HFNDEMIVRAIANS--SIP--IISAIGHETD  252 (529)
Q Consensus       226 ~FN~e~laraI~~~--~iP--VisgIGHE~D  252 (529)
                      -.|-.++++.|.+.  .+|  |+||.|...+
T Consensus        56 ~~dG~el~~~ir~~~~~~piivlt~~~~~~~   86 (128)
T 3dzd_A           56 DGDGVNFIDFIKENSPDSVVIVITGHGSVDT   86 (128)
T ss_dssp             TEETTTHHHHHHHHCTTCEEEEEECSSCCHH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf             9999999999996399875445567799999


No 163
>>1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} (A:)
Probab=65.13  E-value=8.6  Score=17.70  Aligned_cols=15  Identities=13%  Similarity=0.036  Sum_probs=6.3

Q ss_pred             CCCCCCCCEEEEEEC
Q ss_conf             631026528999847
Q gi|254780791|r  139 NPIPFIPKIIAVITS  153 (529)
Q Consensus       139 ~~lP~~p~~i~vits  153 (529)
                      +.+...|++||||--
T Consensus        12 ~~l~kiP~HiavImd   26 (253)
T 1ueh_A           12 KLPAHGCRHVAIIMD   26 (253)
T ss_dssp             -CCTTCCCEEEEECC
T ss_pred             HCCCCCCCEEEEECC
T ss_conf             268899988999534


No 164
>>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} (A:)
Probab=64.89  E-value=8.7  Score=17.66  Aligned_cols=92  Identities=10%  Similarity=-0.044  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99997654012261001631026528999847842589999998630597589997210011110367999999997410
Q gi|254780791|r  122 KRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLK  201 (529)
Q Consensus       122 ~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~  201 (529)
                      .+-++|.++|.-               -++++.+.....+....+....+..+..+++-+.-+.+...+++++...    
T Consensus        24 aiA~~la~~G~~---------------V~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----   84 (260)
T 2ae2_A           24 GIVEELASLGAS---------------VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF----   84 (260)
T ss_dssp             HHHHHHHHTTCE---------------EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHCCCE---------------EEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHH----
T ss_conf             999999987999---------------9999799899999999987358975489902799999999999999985----


Q ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf             03576777589995168884442200769999999
Q gi|254780791|r  202 EGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI  236 (529)
Q Consensus       202 ~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI  236 (529)
                          ...+|++|-.=|.+....++-+++++.-+.+
T Consensus        85 ----~g~idilvnnAG~~~~~~~~~~~~~~~~~~~  115 (260)
T 2ae2_A           85 ----HGKLNILVNNAGIVIYKEAKDYTVEDYSLIM  115 (260)
T ss_dssp             ----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHH
T ss_pred             ----CCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             ----8983798636534457763559999999999


No 165
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:1-117,A:253-287)
Probab=64.67  E-value=8.8  Score=17.63  Aligned_cols=91  Identities=11%  Similarity=0.056  Sum_probs=59.3

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ..+||||.+. +.--+.++++.+..   ..++.+.++++.-    .+....++++.+...       ++|.||+.-.--.
T Consensus         5 s~~Igviip~~~n~~~~~ii~gi~~~a~~~Gy~lii~~~~~----d~~~~~~~i~~l~~~-------~vDGIIi~~~~~~   73 (152)
T 2rjo_A            5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEG----SSEKGIADIRALLQK-------TGGNLVLNVDPND   73 (152)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTT----CHHHHHHHHHHHHHH-------TTTCEEEEECCSS
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEECCCCC
T ss_conf             96899994888888999999999999997299899993899----999999999999965-------9998999836642


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             4442200769999999748904885205777
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHET  251 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~  251 (529)
                      -+++     ..+.+.+.+..||||.-=....
T Consensus        74 ~~~~-----~~~i~~l~~~gIPvV~id~~~~   99 (152)
T 2rjo_A           74 SADA-----RVIVEACSKAGAYVTTIWNKPK   99 (152)
T ss_dssp             HHHH-----HHHHHHHHHHTCEEEEESCCCT
T ss_pred             CCCH-----HHHHHHHHHCCCEEEEECCCCC
T ss_conf             1001-----4778899973987898415565


No 166
>>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} (X:1-164,X:285-324)
Probab=64.53  E-value=8.8  Score=17.61  Aligned_cols=120  Identities=18%  Similarity=0.213  Sum_probs=62.5

Q ss_pred             CCCCCCCCCCCCC-CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE-ECC-----------CCCCCHHHHHHHHHHHHH
Q ss_conf             2261001631026-528999847842589999998630597589997-210-----------011110367999999997
Q gi|254780791|r  132 LFSDQHKNPIPFI-PKIIAVITSPTGAVIRDILQRISCRFPLRVIIF-PVK-----------VQGDECPKEIANAILQLN  198 (529)
Q Consensus       132 lfd~~~k~~lP~~-p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~-p~~-----------vQG~~a~~~i~~ai~~~~  198 (529)
                      .|..+++...|.+ .+.|+.+=-+.|-==+==-.+...+-+..++.+ |..           +-+-+..+++......++
T Consensus        22 ~lk~~~~~~~~~L~gK~iallF~epSTRTR~SFe~A~~~LGg~vi~l~~~~ss~~~e~~~~~~~~~~kgEsi~DTarvLs  101 (204)
T 1js1_X           22 EIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMG  101 (204)
T ss_dssp             HHHHSTTTTTTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99737455654469988999967897007999999999859959971788763202345430003777763999999998


Q ss_pred             HHCCCCCCCCCCEEEEECCCCCHHH-HHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHH
Q ss_conf             4100357677758999516888444-220076999999974890488520577--7525898864
Q gi|254780791|r  199 TLKEGRTCPRPDIIILARGGGSIED-LWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYAA  260 (529)
Q Consensus       199 ~~~~~~~~~~~D~iii~RGGGS~eD-L~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~VA  260 (529)
                      .+        +| +|++|+-..-.+ ....++..+-.-.-.+++|||.|-|-.  .=-.|+|+-.
T Consensus       102 ~y--------~D-~iviR~~~~g~~~~~~~~~~~i~e~a~~s~vPVINg~~~~~HPtQaLaDl~T  157 (204)
T 1js1_X          102 CY--------CD-IIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLIT  157 (204)
T ss_dssp             HT--------CS-EEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHH
T ss_pred             HH--------CC-EEEEEECCHHHHHHHCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH
T ss_conf             61--------74-2589722203444420005799999985278522688876675999999999


No 167
>>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:1-128)
Probab=64.17  E-value=8.7  Score=17.65  Aligned_cols=83  Identities=24%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             528999847842589999998630597-5899972100111103679999999974100357677758999516888444
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      |-+|-||-  +-.....+++.+-..++ ..+.  -       .+.+-..|++.+...       .||+||+        |
T Consensus         5 ~~~vLiVD--D~~~~~~~l~~~L~~~~~~~~v--~-------~a~~~~~a~~~~~~~-------~~dliil--------D   58 (128)
T 1a04_A            5 PATILLID--DHPMLRTGVKQLISMAPDITVV--G-------EASNGEQGIELAESL-------DPDLILL--------D   58 (128)
T ss_dssp             CEEEEEEC--SCHHHHHHHHHHHTTCTTEEEE--E-------EESSHHHHHHHHHHH-------CCSEEEE--------E
T ss_pred             CCEEEEEE--CCHHHHHHHHHHHHHCCCCEEE--E-------EECCHHHHHHHHHHC-------CCEEEEE--------E
T ss_conf             87899996--9999999999999868991899--9-------979999999999856-------9828997--------3


Q ss_pred             HH--HCCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf             22--0076999999974----890488520577752
Q gi|254780791|r  224 LW--HFNDEMIVRAIAN----SSIPIISAIGHETDW  253 (529)
Q Consensus       224 L~--~FN~e~laraI~~----~~iPVisgIGHE~D~  253 (529)
                      +.  ..|-.++++.|-+    +|++++|+-+.+.+.
T Consensus        59 ~~lP~~~G~el~~~i~~~~~~~~iiilt~~~~~~~~   94 (128)
T 1a04_A           59 LNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDV   94 (128)
T ss_dssp             TTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             247743222222222223345664345677999999


No 168
>>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} (A:)
Probab=64.16  E-value=8.9  Score=17.56  Aligned_cols=69  Identities=14%  Similarity=0.257  Sum_probs=50.3

Q ss_pred             HHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf             999999863---05975899972100111103679999999974100357677758999516888444220076999999
Q gi|254780791|r  159 IRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA  235 (529)
Q Consensus       159 ~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara  235 (529)
                      +.|+...++   ....+++..|-+=.-|     +|+..|..+-.       ..+|.|||==||      |.+-...+..|
T Consensus        26 l~~i~~~~~~~a~~~g~~v~~~QSN~EG-----elid~i~~a~~-------~~~dgiIiNpaa------~ThtSvAl~DA   87 (149)
T 2uyg_A           26 LEELEALCEAWGAELGLGVVFRQTNYEG-----QLIEWVQQAHQ-------EGFLAIVLNPGA------LTHYSYALLDA   87 (149)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCHH-----HHHHHHHHTTT-------TTCSEEEEECGG------GGGTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEHHHHHHH-----HHHHHHHHHCC-------CCEEEEEECCCH------HEEECHHHHHH
T ss_conf             9999999999999739705544665699-----99999998334-------660379862640------01310327889


Q ss_pred             HHHCCCEEEE
Q ss_conf             9748904885
Q gi|254780791|r  236 IANSSIPIIS  245 (529)
Q Consensus       236 I~~~~iPVis  245 (529)
                      +..+++|+|-
T Consensus        88 l~~~~~P~VE   97 (149)
T 2uyg_A           88 IRAQPLPVVE   97 (149)
T ss_dssp             HHTSCSCEEE
T ss_pred             HHHCCCCEEE
T ss_conf             9863997899


No 169
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284)
Probab=64.06  E-value=9  Score=17.54  Aligned_cols=97  Identities=10%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             528999847-842589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      +++||||.+ .+..-+..++.-+.+   +.++.+++     ...+-..+..+.|+.+...       ++|.|||+-.++.
T Consensus         2 t~~Igvii~~~~n~f~~~i~~gi~~~a~~~g~~vi~-----~~~~~~~~~~~~i~~li~~-------~vDGIIi~~~~~~   69 (138)
T 8abp_A            2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-----IAVPDGEKTLNAIDSLAAS-------GAKGFVICTPDPK   69 (138)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEE-----EECCSHHHHHHHHHHHHHT-------TCCEEEEECSCGG
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE-----ECCCCHHHHHHHHHHHHHC-------CCCEEEEECCCCC
T ss_conf             809999979998989999999999999972999999-----8599999999999999975-------9998998053234


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             4442200769999999748904885205777525898864
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA  260 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA  260 (529)
                      .       ....+..+.+..||||+==.+-.+.-...+++
T Consensus        70 ~-------~~~~i~~l~~~gIPvV~id~~~~~~~~~~v~~  102 (138)
T 8abp_A           70 L-------GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT  102 (138)
T ss_dssp             G-------HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTT
T ss_pred             C-------CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             5-------58999999973998899954543444344676


No 170
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290)
Probab=63.92  E-value=9  Score=17.52  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             CCEEEEEECCCH-HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             528999847842-589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSPTG-AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~~~-a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ..+||||.+..+ .-+.+++.-+.+   ..+++++++.   +++..+....++|+.+-..       ++|.||++-...+
T Consensus         4 s~tIGVivp~~~~pf~~~i~~Gie~aa~~~Gy~vil~~---~s~~d~~~q~~~ie~li~q-------~VDGIIi~~~d~~   73 (154)
T 3d02_A            4 EKTVVNISKVDGXPWFNRXGEGVVQAGKEFNLNASQVG---PSSTDAPQQVKIIEDLIAR-------KVDAITIVPNDAN   73 (154)
T ss_dssp             CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC---CSSSCHHHHHHHHHHHHHT-------TCSEEEECCSCHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEE---CCCCCHHHHHHHHHHHHHC-------CCCEEEEECCCCC
T ss_conf             88899997889997999999999999997499899997---8999999999999999975-------9998999425841


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             44422007699999997489048852057775258988641
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD  261 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD  261 (529)
                             ......+.+.+..|||+.-=+=-.+....++|.|
T Consensus        74 -------~~~~~i~~l~~~gIpvV~id~~~~~~~~~~~v~d  107 (154)
T 3d02_A           74 -------VLEPVFKKARDAGIVVLTNESPGQPSANWDVEII  107 (154)
T ss_dssp             -------HHHHHHHHHHHTTCEEEEESCTTCTTCSEEEESS
T ss_pred             -------HHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEE
T ss_conf             -------1048999999769958844788887777409985


No 171
>>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A (A:1-245)
Probab=63.71  E-value=9.1  Score=17.49  Aligned_cols=80  Identities=16%  Similarity=0.176  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHH---------------HHC--CHHHHHHHHHHCCCE
Q ss_conf             111036799999999741003576777589995168884---442---------------200--769999999748904
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDL---------------WHF--NDEMIVRAIANSSIP  242 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL---------------~~F--N~e~laraI~~~~iP  242 (529)
                      ......+|..++..++...       .=+||+.-+|+++   -||               +.|  .-..+..++..||.|
T Consensus        31 ~~~~~~el~~al~~~~~d~-------~~~vvl~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  103 (245)
T 2gtr_A           31 NPEVMREVQSALSTAAADD-------SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKP  103 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHSS-------CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CHHHHHHHHHHHHHHHCCC-------CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999986499-------779999566422223543231101122332035677777653001333210011


Q ss_pred             EEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             88520-577752-5898864123777214
Q gi|254780791|r  243 IISAI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       243 VisgI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      +|++| ||=.-- ...=+.+|+|..++.+
T Consensus       104 ~Iaav~G~a~ggG~~l~~~~D~~ia~~~a  132 (245)
T 2gtr_A          104 IIVAVNGPAIGLGASILPLCDVVWANEKA  132 (245)
T ss_dssp             EEEEECSCEETHHHHTGGGSSEEEEETTC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             22013322334454320003453576754


No 172
>>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Probab=63.65  E-value=9.1  Score=17.48  Aligned_cols=103  Identities=20%  Similarity=0.170  Sum_probs=68.3

Q ss_pred             CCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEE----------------EECCCCC----------------CCHH
Q ss_conf             65289998478-42589999998630---59758999----------------7210011----------------1103
Q gi|254780791|r  144 IPKIIAVITSP-TGAVIRDILQRISC---RFPLRVII----------------FPVKVQG----------------DECP  187 (529)
Q Consensus       144 ~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~----------------~p~~vQG----------------~~a~  187 (529)
                      ..+||||+||- .+.++...++-+-+   +...+|+-                -+-.|.|                ...+
T Consensus         1 m~krI~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~~~~   80 (185)
T 1pfk_A            1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE   80 (185)
T ss_dssp             CCCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCCH
T ss_conf             98649998658886778999999999998779999999166788727986868999997798579972247788866657


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf             67999999997410035767775899951688844422007699999997489048852057775258988641237772
Q gi|254780791|r  188 KEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP  267 (529)
Q Consensus       188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP  267 (529)
                      +..-++++.+.+..       .|.+|++=|-||..         -|..+++..|||| ||-.-+|-       |+-=-||
T Consensus        81 ~~~~~~~~~l~~~~-------Id~LivIGGdgS~~---------~a~~L~e~gi~vv-giPkTIDN-------Di~GG~P  136 (185)
T 1pfk_A           81 NIRAVAIENLKKRG-------IDALVVIGGDGSYM---------GAMRLTEMGFPCI-GLPGTIDN-------DIKGGSP  136 (185)
T ss_dssp             HHHHHHHHHHHHTT-------CCEEEEEECHHHHH---------HHHHHHHTTCCEE-EEEBCTTC-------CCTCSCC
T ss_pred             HHHHHHHHHHHHCC-------CCEEEEECCCHHHH---------HHHHHHHCCCCEE-EEEEEECC-------CCCCCCC
T ss_conf             78889999999769-------98899936936899---------9999764367433-12112227-------9988999


Q ss_pred             HHH
Q ss_conf             145
Q gi|254780791|r  268 TGA  270 (529)
Q Consensus       268 TaA  270 (529)
                      ||-
T Consensus       137 ta~  139 (185)
T 1pfk_A          137 VPY  139 (185)
T ss_dssp             CHH
T ss_pred             CHH
T ss_conf             989


No 173
>>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:1-99,A:305-326)
Probab=63.00  E-value=6.3  Score=18.93  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=26.0

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             8999721001111036799999999741003576777589995168884
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      .++++|..+      ++|.+.++.+++         .++-+++||||+-
T Consensus        50 ~avV~P~s~------eeV~~iv~~a~~---------~~ipv~~rGgGts   83 (121)
T 1hsk_A           50 DFYITPTKN------EEVQAVVKYAYQ---------NEIPVTYLGNGSN   83 (121)
T ss_dssp             EEEECCSSH------HHHHHHHHHHHH---------TTCCEEEESSCSS
T ss_pred             EEEEEECCH------HHHHHHHHHHHH---------CCCCEEEECCCEE
T ss_conf             899976999------999999999987---------5998899858436


No 174
>>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} (A:247-509)
Probab=62.67  E-value=9.4  Score=17.35  Aligned_cols=82  Identities=18%  Similarity=0.075  Sum_probs=46.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-----HHHHHHC-------------CHHHHHHHHHHCCCEE
Q ss_conf             111103679999999974100357677758999516888-----4442200-------------7699999997489048
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-----IEDLWHF-------------NDEMIVRAIANSSIPI  243 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-----~eDL~~F-------------N~e~laraI~~~~iPV  243 (529)
                      ..-....+|..++..+.....     .+- +||.+|.|.     --|++.+             .-..+.+.+..+|.||
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~~-----~v~-~vil~g~g~~~fs~G~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~  132 (263)
T 2w3p_A           59 WPLKFAREFDDAILSMRTNEL-----AVG-TWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSL  132 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCS-----SCC-EEEEEEESCHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred             CHHHHHHHHHHHHHHHCCCCH-----HHE-EEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             578899977789998336741-----010-67773478899999999998708654899999999999999885176116


Q ss_pred             EEEE-CCCCC---CHHHHHHHCCCCCCCHH
Q ss_conf             8520-57775---25898864123777214
Q gi|254780791|r  244 ISAI-GHETD---WTLADYAADLRAPTPTG  269 (529)
Q Consensus       244 isgI-GHE~D---~Tl~D~VAD~Ra~TPTa  269 (529)
                      |++| ||-.=   -..+-+.+|.|..++.+
T Consensus       133 ia~i~G~a~g~g~g~~la~~~D~~ia~~~a  162 (263)
T 2w3p_A          133 FALIEPGSCFAGTFAELAFAADRTYMAALP  162 (263)
T ss_dssp             EEEECTTCCEEGGGHHHHHTSSEEEECCCT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             999638961010799999971399986178


No 175
>>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940} (A:48-106)
Probab=62.50  E-value=6.9  Score=18.55  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=26.5

Q ss_pred             CCCEEEEECCCCCEECCHHHCCCCCEEEEEEECE
Q ss_conf             1461999848988957778929998699999110
Q gi|254780791|r  459 KRGYTSIQDTNNNFITQKRNLATKTRILINFFDG  492 (529)
Q Consensus       459 ~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG  492 (529)
                      .|||.-+++++|++|+. .+...++.+.+-..||
T Consensus         1 ~~~yvRItd~dGqVIt~-~~~~~~~~~~~L~~eg   33 (59)
T 3fn2_A            1 GRGYVRITDKDGQVITY-EDGSVQDKTVFLTNEG   33 (59)
T ss_dssp             TTCEEEEECTTSCBCSC-CCSCSTTEEEEEEECS
T ss_pred             CCCEEEEECCCCCEEEC-CCCCCCCEEEEEECCC
T ss_conf             52348885699888834-9987651588862257


No 176
>>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} (A:)
Probab=62.25  E-value=9.6  Score=17.29  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             HHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             86305975-8999721001111036799999999741003576777589995168884
Q gi|254780791|r  165 RISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       165 ~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      .+++.+++ .++||.+...|+..+.|                  .+|++|+..++...
T Consensus        26 ~~~~~~~i~~i~LfGS~ArG~~~~~S------------------DiDl~Vi~~~~~~~   65 (111)
T 2rff_A           26 VASSFPNLEEVYIFGSRARGDYLDTS------------------DIDILFVFKGIKEX   65 (111)
T ss_dssp             HHHHCTTEEEEEEESHHHHSCCCTTC------------------CEEEEEEESSCTTC
T ss_pred             HHHHCCCEEEEEEECCCCCCCCCCCC------------------CEEEEEEECCCCCC
T ss_conf             99876880399998710359989999------------------83899997898753


No 177
>>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} (A:)
Probab=62.24  E-value=9.6  Score=17.29  Aligned_cols=95  Identities=11%  Similarity=-0.052  Sum_probs=60.5

Q ss_pred             HHHHHHHH--HHCCCEEEEEEE----CCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf             99999986--305975899972----1001-1110367999999997410035767775899951688844422007699
Q gi|254780791|r  159 IRDILQRI--SCRFPLRVIIFP----VKVQ-GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM  231 (529)
Q Consensus       159 ~~D~~~~~--~~r~p~~~~~~p----~~vQ-G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~  231 (529)
                      +.++.+..  .+++++.+++.+    ..+- .+.++..|..+.+.+....       +|.|-+ --||+....|.-+-+.
T Consensus       141 ~~~i~~v~~~~~~~g~~vile~i~~~~~~~d~~~~~~~i~~a~~~a~e~G-------aD~iKt-~~~~~~~~~~~~~v~~  212 (304)
T 1to3_A          141 LNXVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSG-------ADLYKV-EXPLYGKGARSDLLTA  212 (304)
T ss_dssp             HHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSS-------CSEEEE-CCGGGGCSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC-------CEEEEE-ECCCCCHHHHHHHHHH
T ss_conf             99999999999873997389873147776765540889999999876439-------769994-0787604566789999


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             999997489048852057775258988641
Q gi|254780791|r  232 IVRAIANSSIPIISAIGHETDWTLADYAAD  261 (529)
Q Consensus       232 laraI~~~~iPVisgIGHE~D~Tl~D~VAD  261 (529)
                      +.+.+..|++||+.+=|=-++.....++.+
T Consensus       213 ~~~~~~~~~~pv~vaGG~~~~~~~~~~i~~  242 (304)
T 1to3_A          213 SQRLNGHINXPWVILSSGVDEKLFPRAVRV  242 (304)
T ss_dssp             HHHHHHTCCSCEEECCTTSCTTTHHHHHHH
T ss_pred             HHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             999872589968999289898999999999


No 178
>>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} (A:)
Probab=62.01  E-value=9.7  Score=17.26  Aligned_cols=81  Identities=17%  Similarity=0.094  Sum_probs=54.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC--CCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC--HHHH
Q ss_conf             1111036799999999741003576777589995168--88444220076999999974890488520577752--5898
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG--GSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW--TLAD  257 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG--GS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~--Tl~D  257 (529)
                      -|-..+.++..++..           .+|.|.+...+  ++....+.-+.+.+.+....+++||+.+=|=.++.  -+.+
T Consensus       113 ~~~~t~~e~~~a~~~-----------g~d~i~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ipi~~~GGi~~~~i~~~~~  181 (215)
T 1xi3_A          113 ASVYSLEEALEAEKK-----------GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLK  181 (215)
T ss_dssp             EEESSHHHHHHHHHH-----------TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHT
T ss_pred             CCCCCHHHHHHHHHC-----------CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf             454509999988745-----------977898601322566555532226888888872578816766899999999998


Q ss_pred             HHHC--------CCCCCCHHHHHH
Q ss_conf             8641--------237772145676
Q gi|254780791|r  258 YAAD--------LRAPTPTGAAEM  273 (529)
Q Consensus       258 ~VAD--------~Ra~TPTaAAEl  273 (529)
                      .-||        .+++.|.++++.
T Consensus       182 ~GadgV~vGsai~~~~dp~~~~~~  205 (215)
T 1xi3_A          182 TGVDGIAVISAVMGAEDVRKATEE  205 (215)
T ss_dssp             TTCSEEEESHHHHTSSSHHHHHHH
T ss_pred             HCCCEEEEHHHHHCCCCHHHHHHH
T ss_conf             199899973997779999999999


No 179
>>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A (A:)
Probab=61.75  E-value=9.8  Score=17.22  Aligned_cols=82  Identities=16%  Similarity=0.165  Sum_probs=47.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-------------HHH--HHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             1111036799999999741003576777589995168884-------------442--2007699999997489048852
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-------------EDL--WHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-------------eDL--~~FN~e~laraI~~~~iPVisg  246 (529)
                      -...-..++..+++.+....      ..-+||+.-||...             ++.  +.-.-..+...+..||.|+|++
T Consensus        24 ~s~~~~~~l~~~l~~~~~~~------~~~~Vv~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaa   97 (254)
T 3gow_A           24 ITGELLDALYAALKEGEEDR------EVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVA   97 (254)
T ss_dssp             BCHHHHHHHHHHHHHHHHCT------TCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99999999999999998688------958999954777642111024322565311001124688889986389975999


Q ss_pred             E-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             0-577752-5898864123777214
Q gi|254780791|r  247 I-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       247 I-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      | ||=.-- ...=+.+|.|..|+++
T Consensus        98 i~G~a~GgG~~la~~~D~~ia~~~~  122 (254)
T 3gow_A           98 VNGVAAGAGMSLALWGDLRLAAVGA  122 (254)
T ss_dssp             ECSEEETHHHHHHTTCSEEEEETTC
T ss_pred             EEEEEEECEEEEEECCCCCEECCCC
T ss_conf             9889988613510035400444887


No 180
>>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} (A:)
Probab=61.62  E-value=9.8  Score=17.20  Aligned_cols=82  Identities=21%  Similarity=0.118  Sum_probs=50.9

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf             89998478425899999986305975899972100111103679999999974100357677758999516888444220
Q gi|254780791|r  147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH  226 (529)
Q Consensus       147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~  226 (529)
                      ||-||-  +...+.+++...-..|++++....          +-..|+..+...       .||+||+=      -.|=-
T Consensus         2 kVLiVd--Dd~~~~~~l~~~L~~~g~~v~~a~----------~~~~Al~~l~~~-------~~dliilD------~~lp~   56 (121)
T 2pl1_A            2 RVLVVE--DNALLRHHLKVQIQDAGHQVDDAE----------DAKEADYYLNEH-------IPDIAIVD------LGLPD   56 (121)
T ss_dssp             EEEEEC--SCHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEEC------SCCSS
T ss_pred             EEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CHHHHHHH------HCCCC
T ss_conf             899996--799999999999998799999989----------889999988603-------20124354------02566


Q ss_pred             CCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf             076999999974----890488520577752
Q gi|254780791|r  227 FNDEMIVRAIAN----SSIPIISAIGHETDW  253 (529)
Q Consensus       227 FN~e~laraI~~----~~iPVisgIGHE~D~  253 (529)
                      .|-.++++.|..    .|+||+++.+...|.
T Consensus        57 ~dG~~~~~~lr~~~~~~~~iil~~~~~~~~~   87 (121)
T 2pl1_A           57 EDGLSLIRRWRSNDVSLPILVLTARESWQDK   87 (121)
T ss_dssp             SCHHHHHHHHHHTTCCSCEEEEESCCCHHHH
T ss_pred             CHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf             3378999999853977549999704999999


No 181
>>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A (A:)
Probab=61.61  E-value=9.8  Score=17.20  Aligned_cols=52  Identities=17%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCEE--EEEEECCCCCCC-CCCEEEEEEECCCCEEEEEEECC
Q ss_conf             299999999999740017189--999970543568-88627999874894799999735
Q gi|254780791|r   16 SVSELSYHLKHIVESNLSHVC--VRGEISGYRGIH-SSGHAYFSLKDNHSRIDAIIWKG   71 (529)
Q Consensus        16 svs~l~~~i~~~l~~~~~~~~--v~gEis~~~~~~-~sGH~Yf~lkd~~a~i~~~~~~~   71 (529)
                      +-.++..+||..++..|+..|  |+|.=-+..-.| ...++||.+.    .+...+||+
T Consensus        47 ~~~diA~~IK~~~D~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~----~~~ill~Kt  101 (102)
T 1yo3_A           47 VEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIG----QVAILLFKS  101 (102)
T ss_dssp             SHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEET----TEEEEEEEC
T ss_pred             CHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCEEEEEEC----CEEEEEEEC
T ss_conf             6899999999975175498569998996679999769948999959----999999954


No 182
>>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} (A:14-156)
Probab=61.60  E-value=9.8  Score=17.20  Aligned_cols=57  Identities=14%  Similarity=0.121  Sum_probs=34.2

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             9721001111036799999999741003576777589995168-884442200769999999748904885
Q gi|254780791|r  176 IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       176 ~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      .....+-|......|+...+..          .+|+||+++-| +..+-++.=..+.|+   -.+|.||+.
T Consensus        84 ~~~~~~~~~~~~~~i~~~~~~~----------~~dliV~G~~~~~~~~~~lGs~~~~l~---~~~~~pVlv  141 (143)
T 3fg9_A           84 EPLVYEGGDVDDVILEQVIPEF----------KPDLLVTGADTEFPHSKIAGAIGPRLA---RKAPISVIV  141 (143)
T ss_dssp             EEEEEECSCHHHHHHHTHHHHH----------CCSEEEEETTCCCTTSSSCSCHHHHHH---HHCSSEEEE
T ss_pred             EEEEEEECHHHHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCCCCHHHHHH---HHCCCCEEE
T ss_conf             4799863004788751056874----------998999717899863333075999999---707998899


No 183
>>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} (A:)
Probab=61.49  E-value=9.8  Score=17.19  Aligned_cols=88  Identities=20%  Similarity=0.350  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             02652899984784258999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      |.-+++|-||-.  .+.+..++...-.+|++++....          +-.+|++.+...       .||+||+       
T Consensus         4 ~l~~~~vLiVdd--~~~~~~~~~~~L~~~g~~v~~~~----------~~~~al~~l~~~-------~~dliil-------   57 (130)
T 3eod_A            4 PLVGKQILIVED--EQVFRSLLDSWFSSLGATTVLAA----------DGVDALELLGGF-------TPDLMIC-------   57 (130)
T ss_dssp             TTTTCEEEEECS--CHHHHHHHHHHHHHTTCEEEEES----------CHHHHHHHHTTC-------CCSEEEE-------
T ss_pred             CCCCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEE-------
T ss_conf             888998999949--89999999999998799999972----------277789998535-------6675651-------


Q ss_pred             HHHH--HCCHHHHHHHHHHC--CCEEEEEECCCCCCHHH
Q ss_conf             4422--00769999999748--90488520577752589
Q gi|254780791|r  222 EDLW--HFNDEMIVRAIANS--SIPIISAIGHETDWTLA  256 (529)
Q Consensus       222 eDL~--~FN~e~laraI~~~--~iPVisgIGHE~D~Tl~  256 (529)
                       |+.  ..|-.++++.|-+.  .+|||--.||.......
T Consensus        58 -D~~lp~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~   95 (130)
T 3eod_A           58 -DIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIA   95 (130)
T ss_dssp             -CCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHH
T ss_pred             -ECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf             -01369998789999999838999699980899999999


No 184
>>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} (A:)
Probab=61.17  E-value=10  Score=17.14  Aligned_cols=81  Identities=25%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             CEEEEEECCC-------------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             2899984784-------------2589999998630---59758999721001111036799999999741003576777
Q gi|254780791|r  146 KIIAVITSPT-------------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       146 ~~i~vits~~-------------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      ++|-||-.|+             ..-+.|+...+++   ...+++..|-+=--|     +|+..|..+.        ..+
T Consensus         2 ~~IlvinGPNLn~LG~REp~iYG~~tl~~i~~~~~~~a~~lg~~i~~~QSN~EG-----elId~i~~a~--------~~~   68 (154)
T 1uqr_A            2 KKILLLNGPNLNMLGKREPHIYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEE-----SLINRIHQAF--------QNT   68 (154)
T ss_dssp             CEEEEEECTTGGGTTCSSGGGTTCCCHHHHHHHHHHHHHHTTCEEEEEECSSHH-----HHHHHHHHTT--------TTC
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-----HHHHHHHHHH--------CCC
T ss_conf             779998188811057878975884589999999999998718731446776799-----9999999975--------287


Q ss_pred             CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             589995168884442200769999999748904885
Q gi|254780791|r  210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      |.|||==||      |.+-+..+..|+..+++|+|-
T Consensus        69 dgiIINpga------~ThtSiAl~DAl~~~~~P~VE   98 (154)
T 1uqr_A           69 DFIIINPGA------FTHTSVAIRDALLAVSIPFIE   98 (154)
T ss_dssp             CEEEEECTT------HHHHCHHHHHHHHHHTCCEEE
T ss_pred             CEEEECCCC------EEEEHHHHHHHHHHCCCCEEE
T ss_conf             625753654------054125589999872998899


No 185
>>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:1-126)
Probab=60.91  E-value=5.8  Score=19.23  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=25.9

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             899972100111103679999999974100357677758999516888
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ..++||..+      .+|.+.++.+++         +++-|+.||||+
T Consensus        72 ~aVv~P~~~------~eV~~ivk~a~~---------~~i~v~~rggG~  104 (126)
T 1e8g_A           72 SAIVAPRNV------ADVQSIVGLANK---------FSFPLWPISIGR  104 (126)
T ss_dssp             SEEECCSSH------HHHHHHHHHHHH---------HTCCEEEESSCC
T ss_pred             CEEEECCCH------HHHHHHHHHHHH---------CCCCEEEECCCC
T ss_conf             789966999------999999999998---------799389977998


No 186
>>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} (A:313-452)
Probab=60.87  E-value=10  Score=17.10  Aligned_cols=85  Identities=7%  Similarity=-0.005  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             11036799999999741003576777589995168884442200769999999748904885205777525898864123
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR  263 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R  263 (529)
                      ..-|.+|..+|+.+.....       .=++|+=|..-..|......+.++++++...+-.+..+|.....-..-+.-..-
T Consensus        22 ahnp~si~a~l~~l~~~~~-------~r~~ii~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~   94 (140)
T 1gg4_A           22 NANVGSXTAAVQVLAEXPG-------YRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEH   94 (140)
T ss_dssp             CCCHHHHHHHHHHHHHSSS-------EEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEEEEESSSTHHHHHHTTSCEE
T ss_pred             CCCHHHHHHHHHHHHHCCC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEE
T ss_conf             7986999999999986579-------826999665767750799999999999877999999978108988751887438


Q ss_pred             CCCCHHHHHHHC
Q ss_conf             777214567633
Q gi|254780791|r  264 APTPTGAAEMAV  275 (529)
Q Consensus       264 a~TPTaAAElav  275 (529)
                      +++++.|.+.+.
T Consensus        95 ~~~~~~a~~~~~  106 (140)
T 1gg4_A           95 FADKTALITRLK  106 (140)
T ss_dssp             ESSHHHHHHHHH
T ss_pred             ECCHHHHHHHHH
T ss_conf             589999999999


No 187
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:1-87)
Probab=60.60  E-value=10  Score=17.07  Aligned_cols=35  Identities=14%  Similarity=0.015  Sum_probs=24.6

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             97210011110367999999997410035767775899951688
Q gi|254780791|r  176 IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       176 ~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      ..|..|==-....+|.++++.+++         .++-|.+||||
T Consensus        28 ~~P~~vv~P~s~~eV~~iv~~a~~---------~~~~v~~rggG   62 (87)
T 3js8_A           28 VDDVWTCAPRSADEVVKVANWAKD---------NGYKVRARGMM   62 (87)
T ss_dssp             EEEEEEECCSSHHHHHHHHHHHHH---------HTCEEEEECSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHH---------CCCEEEEECCC
T ss_conf             688889946999999999999998---------79809998999


No 188
>>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} (A:)
Probab=60.19  E-value=10  Score=17.01  Aligned_cols=81  Identities=11%  Similarity=-0.011  Sum_probs=55.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHH
Q ss_conf             100111103679999999974100357677758999516888444220076999999974890488520577--752589
Q gi|254780791|r  179 VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLA  256 (529)
Q Consensus       179 ~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~  256 (529)
                      --.-|......++++|..+......    +.=+|.|-=.||+..     .-..++.+|-.+++||++-+.+.  .--+++
T Consensus        32 ~g~i~~~~~~~l~~~l~~a~~~~~~----~~I~L~InSpGG~v~-----~~~~i~~~i~~~~~~v~~~~~g~aaSaa~~i  102 (193)
T 1yg6_A           32 TGQVEDHMANLIVAQMLFLEAENPE----KDIYLYINSPGGVIT-----AGMSIYDTMQFIKPDVSTICMGQAASMGAFL  102 (193)
T ss_dssp             ESSBCHHHHHHHHHHHHHHHHHCSS----SCEEEEEEECCBCHH-----HHHHHHHHHHHSSSCEEEEEEEEEETHHHHH
T ss_pred             CCEECHHHHHHHHHHHHHHHHCCCC----CCEEEEEECCCCCHH-----HHHHHHHHHHHCCCCEEEEEEEEEHHHHHHH
T ss_conf             9886578899999999999814998----886999518997088-----8999999984279988999998717768999


Q ss_pred             HHHHCCCCCCCH
Q ss_conf             886412377721
Q gi|254780791|r  257 DYAADLRAPTPT  268 (529)
Q Consensus       257 D~VAD~Ra~TPT  268 (529)
                      =.++|.+...|.
T Consensus       103 ~~a~~~~~~~~~  114 (193)
T 1yg6_A          103 LTAGAKGKRFCL  114 (193)
T ss_dssp             HHTSCTTCEEEC
T ss_pred             HHCCCCCCEECC
T ss_conf             962788874218


No 189
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:1-110,A:243-288)
Probab=60.05  E-value=10  Score=16.99  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             CEEEEEECCCH---HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             28999847842---589999998630---597589997210011110367999999997410035767775899951688
Q gi|254780791|r  146 KIIAVITSPTG---AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       146 ~~i~vits~~~---a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      +.||||.+.-+   .-+..+++-+.+   +..+.++++.+.-.-    ......++.+...       ++|.|||.=+  
T Consensus         9 ~~IgVIvp~l~~~~Pf~s~ii~gI~~~a~~~Gy~lil~~~~~~~----e~~~~~l~~l~~~-------~VDGIIi~~~--   75 (156)
T 3gv0_A            9 NVIALVLSVDEELXGFTSQXVFGITEVLSTTQYHLVVTPHIHAK----DSXVPIRYILETG-------SADGVIISKI--   75 (156)
T ss_dssp             CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGG----GTTHHHHHHHHHT-------CCSEEEEESC--
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHCC-------CCCEEEEECC--
T ss_conf             97999937676678599999999999999869989999689996----9999999998638-------9777987402--


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             8444220076999999974890488520577752589886
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                             ..+......+....+|+|. |+...+-.-.++|
T Consensus        76 -------~~~~~~l~~l~~~~iPvVl-id~~~~~~~~~~V  107 (156)
T 3gv0_A           76 -------EPNDPRVRFXTERNXPFVT-HGRSDXGIEHAFH  107 (156)
T ss_dssp             -------CTTCHHHHHHHHTTCCEEE-ESCCCSSCCCEEE
T ss_pred             -------CCCHHHHHHHHHCCCCCEE-CCCCCCCCCCCEE
T ss_conf             -------3321677877751497220-0113579987668


No 190
>>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} (A:)
Probab=59.85  E-value=10  Score=16.97  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=54.6

Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             31026528999847842589999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r  140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      .-..-|.+|-||-  +-..+..++...-..+++++..+...          ..|++.+...      ..||+||+     
T Consensus        10 ~~~~~~~rILiVd--Dd~~~~~~i~~~L~~~g~~v~~a~~g----------~~al~~~~~~------~~~Dliil-----   66 (138)
T 2b4a_A           10 HHHMQPFRVTLVE--DEPSHATLIQYHLNQLGAEVTVHPSG----------SAFFQHRSQL------STCDLLIV-----   66 (138)
T ss_dssp             ----CCCEEEEEC--SCHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHTGGGG------GSCSEEEE-----
T ss_pred             CCCCCCCEEEEEE--CCHHHHHHHHHHHHHCCCEEEECCCH----------HHHHHHHHCC------CCCCEEEE-----
T ss_conf             0476788799996--99999999999999869989744999----------9999999646------99979998-----


Q ss_pred             CHHHH--HHCCHHHHHHHHHH--CCCE--EEEEECCCCCCH
Q ss_conf             84442--20076999999974--8904--885205777525
Q gi|254780791|r  220 SIEDL--WHFNDEMIVRAIAN--SSIP--IISAIGHETDWT  254 (529)
Q Consensus       220 S~eDL--~~FN~e~laraI~~--~~iP--VisgIGHE~D~T  254 (529)
                         |+  =-.|-.++++.|-+  ..+|  ++||.+++.+..
T Consensus        67 ---D~~mP~~~G~el~~~ir~~~~~~pii~lTa~~~~~~~~  104 (138)
T 2b4a_A           67 ---SDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIES  104 (138)
T ss_dssp             ---ETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCCC
T ss_pred             ---ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHH
T ss_conf             ---37777885799999999709989789998885399998


No 191
>>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} (D:1-193)
Probab=59.38  E-value=11  Score=16.91  Aligned_cols=75  Identities=13%  Similarity=0.036  Sum_probs=53.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH---
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844---
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE---  222 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e---  222 (529)
                      -+||||.-+..-..+++.+.++... +++.+++..-                       ....+|.||+.=|+++..   
T Consensus         3 ~~I~ii~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-----------------------~l~~~d~lil~Gg~~~~~~~~   58 (193)
T 3d54_D            3 PRACVVVYPGSNCDRDAYHALEING-FEPSYVGLDD-----------------------KLDDYELIILPGGFSYGDYLR   58 (193)
T ss_dssp             CEEEEECCTTEEEHHHHHHHHHTTT-CEEEEECTTC-----------------------CCSSCSEEEECEECGGGGCSS
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCC-CEEEEEECHH-----------------------HHHHCCEEEECCCCCHHHHHH
T ss_conf             6599992288182999999999869-9289984733-----------------------340287899789764088899


Q ss_pred             ---HHHHCCHHHHHHHHHHCCCEEE
Q ss_conf             ---4220076999999974890488
Q gi|254780791|r  223 ---DLWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       223 ---DL~~FN~e~laraI~~~~iPVi  244 (529)
                         .+|--......|..++...||+
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~pil   83 (193)
T 3d54_D           59 PGAVAAREKIAFEIAKAAERGKLIM   83 (193)
T ss_dssp             TTHHHHTSTTHHHHHHHHHHTCEEE
T ss_pred             HHHHHCHHHHHHHHHHHHHCCCCEE
T ss_conf             8877430146689999874698579


No 192
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:1-116,A:250-289)
Probab=58.91  E-value=11  Score=16.84  Aligned_cols=84  Identities=14%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             CCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             65289998478-42589999998630---597589997210011110367999999997410035767775899951688
Q gi|254780791|r  144 IPKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       144 ~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      =...|||+... ++--+.+++.-+..   .+++.++++++.-..    .....+|+.+...       .+|.||+.=.. 
T Consensus        15 ~s~~Igvi~~~~~~~~~~~i~~~i~~~~~~~g~~~~i~~~~~~~----~~~~~~i~~~~~~-------~vdGiIi~~~~-   82 (156)
T 2fep_A           15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNM----EKELHLLNTMLGK-------QVDGIVFMGGN-   82 (156)
T ss_dssp             -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCH----HHHHHHHHHHHHT-------TCSEEEECCSC-
T ss_pred             HHCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHHC-------CCCCCEEECCC-
T ss_conf             35999999688879899999999999999869989999789997----9999999999855-------98740110013-


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             8444220076999999974890488520
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisgI  247 (529)
                              .+....+......+|||.-=
T Consensus        83 --------~~~~~~~~l~~~~iPvV~i~  102 (156)
T 2fep_A           83 --------ITDEHVAEFKRSPVPIVLAA  102 (156)
T ss_dssp             --------CCHHHHHHHHHSSSCEEEES
T ss_pred             --------CCHHHHHHHHCCCCCCCCCC
T ss_conf             --------43276764312222233333


No 193
>>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} (A:1-204)
Probab=58.66  E-value=11  Score=16.81  Aligned_cols=81  Identities=14%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             02652899984784258999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      |.-+.+|+||-..++- .+-+.+.+.. .+..+.++|.........         .         ..+|.+||.=|+|+.
T Consensus         4 ~~~~~~v~iiD~~~~~-~~~~~~~l~~-~g~~~~v~~~~~~~~~~~---------~---------~~~~gvvl~gg~~~~   63 (204)
T 1gpm_A            4 NIHKHRILILDFGSQY-TQLVARRVRE-LGVYCELWAWDVTEAQIR---------D---------FNPSGIILSGGPEST   63 (204)
T ss_dssp             CTTSSEEEEEECSCTT-HHHHHHHHHH-TTCEEEEEESCCCHHHHH---------H---------HCCSEEEECCCSSCT
T ss_pred             CCCCCCEEEEECCCHH-HHHHHHHHHH-CCCEEEEECCCCCHHHHH---------H---------CCCCEEEECCCCCCC
T ss_conf             6666908999899759-9999999987-597389986999999997---------2---------499999989999980


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             442200769999999748904885
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      .|   .++...++...+..+||+-
T Consensus        64 ~~---~~~~~~i~~~~~~~~PiLG   84 (204)
T 1gpm_A           64 TE---ENSPRAPQYVFEAGVPVFG   84 (204)
T ss_dssp             TS---TTCCCCCGGGGTSSSCEEE
T ss_pred             CC---CCCCCCCHHHHCCCCCEEE
T ss_conf             00---7994015998818999999


No 194
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:1-108,A:241-291)
Probab=58.60  E-value=11  Score=16.80  Aligned_cols=93  Identities=16%  Similarity=0.200  Sum_probs=62.0

Q ss_pred             CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             28999847-842589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      ..||||.+ .+..-+.+++.-+..   +.++.+.++++.-.    +....++++.+...       .+|.|||+-.--  
T Consensus         9 ~~IGviip~l~~~f~~~ii~gie~aa~~~Gy~l~i~~~~~d----~e~~~~~l~~l~~~-------~vDGIII~~~~~--   75 (159)
T 3egc_A            9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAED----IVREREAVGQFFER-------RVDGLILAPSEG--   75 (159)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTC----HHHHHHHHHHHHHT-------TCSEEEECCCSS--
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEEECCCC--
T ss_conf             99999929998889999999999999986998999968999----79999999999856-------973885310121--


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             44220076999999974890488520577752589886
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                             +......+....+|||. |+...+..-+++|
T Consensus        76 -------~~~~i~~l~~~giPvV~-id~~~~~~~~~~V  105 (159)
T 3egc_A           76 -------EHDYLRTELPKTFPIVA-VNRELRIPGCGAV  105 (159)
T ss_dssp             -------CCHHHHHSSCTTSCEEE-ESSCCCCTTCEEE
T ss_pred             -------CHHHHHHHHHHCCCCCC-CCCCCCCCCCEEE
T ss_conf             -------10158999863355422-3455568874489


No 195
>>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} (A:)
Probab=58.46  E-value=11  Score=16.79  Aligned_cols=100  Identities=24%  Similarity=0.228  Sum_probs=60.5

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      +.++|-||  .+....+++++.+=..|++++.....          --+|++.+...       .||+||+==.      
T Consensus         2 M~~~ILiV--dD~~~~r~~l~~~L~~~g~~v~~a~~----------~~eAl~~l~~~-------~~DlvllD~~------   56 (136)
T 1mvo_A            2 MNKKILVV--DDEESIVTLLQYNLERSGYDVITASD----------GEEALKKAETE-------KPDLIVLDVM------   56 (136)
T ss_dssp             CCCEEEEE--CSCHHHHHHHHHHHHHTTCEEEEESS----------HHHHHHHHHHH-------CCSEEEEESS------
T ss_pred             CCCCEEEE--ECCHHHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEECCC------
T ss_conf             88889999--79999999999999988999999899----------99999998618-------9999997689------


Q ss_pred             HHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHH-HHHHCCCCCCCH
Q ss_conf             220076999999974----890488520577752589-886412377721
Q gi|254780791|r  224 LWHFNDEMIVRAIAN----SSIPIISAIGHETDWTLA-DYAADLRAPTPT  268 (529)
Q Consensus       224 L~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~-D~VAD~Ra~TPT  268 (529)
                      |-..|-.++++.+-.    +++|++|+.|...+.--+ +.-+|-=-.-|-
T Consensus        57 lP~~~g~~~~~~~r~~~~~~~ii~~t~~~~~~~~~~a~~~g~~~~l~KP~  106 (136)
T 1mvo_A           57 LPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPF  106 (136)
T ss_dssp             CSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSC
T ss_pred             CCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCC
T ss_conf             89998699999998449998089997769999999999859984787999


No 196
>>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (B:)
Probab=58.45  E-value=7.8  Score=18.09  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=38.8

Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             77758999516888444220076999999974890488520577752589886
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      ..||+|+|         +.+.+|..+++.-..+.||||+=+--..|.+.+||+
T Consensus       156 ~~P~~iii---------~d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~Idyp  199 (231)
T 3bbn_B          156 GLPDIVII---------VDQQEEYTALRECITLGIPTICLIDTNCNPDLADIS  199 (231)
T ss_dssp             SCCSEEEE---------SCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEE
T ss_pred             CCCCEEEE---------ECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEE
T ss_conf             14516898---------316621898998986699769987279997657677


No 197
>>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} (A:1-101,A:213-226)
Probab=58.16  E-value=11  Score=16.75  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHH----C---CCE-EEEEEECCC--------CCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             28999847842589999998630----5---975-899972100--------1111036799999999741003576777
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISC----R---FPL-RVIIFPVKV--------QGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~----r---~p~-~~~~~p~~v--------QG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      |+||||-.-+-++=-||.+.+.+    +   ... .++++.+.+        .++...+.+.++++...+.+       +
T Consensus         2 K~IGIIGGmGp~aT~~yy~~I~~~~~a~~~~~~~p~iii~s~~~~dr~~~~~~~~~~~~~L~~~~~~Le~aG-------a   74 (115)
T 2zsk_A            2 KKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRKKILINAAKALERAG-------A   74 (115)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHHHTCTTHHHHHHHHHHHHHHHHHHHT-------C
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-------C
T ss_conf             769997346889999999999999787618877885899817803402124552238899999999984469-------8


Q ss_pred             CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             58999516888444220076999999974890488520577
Q gi|254780791|r  210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE  250 (529)
Q Consensus       210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE  250 (529)
                      |+|+|+=    -.==++|++-     -..+++|+|++-=|-
T Consensus        75 d~ivi~c----NTaH~~~d~i-----~~~~~iPilh~~~~~  106 (115)
T 2zsk_A           75 ELIAFAA----NTPHLVFDDV-----QREVNVPMVSAEIHM  106 (115)
T ss_dssp             SEEEESS----SGGGGGHHHH-----HHHCSSCBCCHHHHH
T ss_pred             CEEEEEC----CHHHHHHHHH-----HHHCCCCEEEHHHHH
T ss_conf             8899945----1778539999-----986599976199999


No 198
>>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:)
Probab=57.91  E-value=4.4  Score=20.29  Aligned_cols=80  Identities=14%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf             5899999986305975-899972100111103679999999974100357677758999516888444220076999999
Q gi|254780791|r  157 AVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA  235 (529)
Q Consensus       157 a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara  235 (529)
                      ..+..+++.+..++|+ .++||.+...|+.-+.|                  ..|+.|+...+-+..+++-.     ...
T Consensus        10 ~~~~~~i~~l~~~~~v~~i~LFGS~ArG~~~~~S------------------DIDi~V~~~~~~~~~~~~~i-----~~~   66 (98)
T 1wot_A           10 RARREAVLSLCARHGAVRVRVFGSVARGEAREDS------------------DLDLLVAFEEGRTLLDHARL-----KLA   66 (98)
T ss_dssp             HHHHHHHHHHHHHHTCSSCEECSHHHHTCCCTTC------------------CCEEEECCCSSCCHHHHHHH-----HHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------------------CCEEEEEECCCCCHHHHHHH-----HHH
T ss_conf             9999999999998098489998884379858999------------------94289861899899999999-----999


Q ss_pred             HH-HCCCEEEEEECCCCCCHHHHHH
Q ss_conf             97-4890488520577752589886
Q gi|254780791|r  236 IA-NSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       236 I~-~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      +. .+++||---+=++....+.+.|
T Consensus        67 l~~~~~~~vdlv~~~~~~~~~~~~i   91 (98)
T 1wot_A           67 LEGLLGVRVDIVSERGLAPRLREQV   91 (98)
T ss_dssp             HHHHSCSCCEEEETTTSCHHHHHHH
T ss_pred             HHHHHCCCEEEEEHHHCCHHHHHHH
T ss_conf             9998099689977555999999999


No 199
>>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} (A:)
Probab=57.87  E-value=11  Score=16.71  Aligned_cols=113  Identities=11%  Similarity=0.011  Sum_probs=71.8

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE--CCCCCH
Q ss_conf             652899984784258999999863059758999721001111036799999999741003576777589995--168884
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA--RGGGSI  221 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~--RGGGS~  221 (529)
                      ....|.++....+....++++..+.... .+.+      |-..+.+..++++.           ..|.|++.  .|||..
T Consensus       128 g~d~v~l~~~~~~~~~~~~~~~~~~~g~-~~~~------~~~~~~~~~~a~~~-----------g~d~i~~~~~~~~~~~  189 (254)
T 1vc4_A          128 GASAALLIVALLGELTGAYLEEARRLGL-EALV------EVHTERELEIALEA-----------GAEVLGINNRDLATLH  189 (254)
T ss_dssp             TCSEEEEEHHHHGGGHHHHHHHHHHHTC-EEEE------EECSHHHHHHHHHH-----------TCSEEEEESBCTTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEE------EEECHHHHHHHHCC-----------CCCEEEEECCCHHHHH
T ss_conf             5238999999987778999999998388-2265------55128663021158-----------9868999525556653


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHC--------CCCCCCHHHHHHH
Q ss_conf             4422007699999997489048852057--775258988641--------2377721456763
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGH--ETDWTLADYAAD--------LRAPTPTGAAEMA  274 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGH--E~D~Tl~D~VAD--------~Ra~TPTaAAEla  274 (529)
                      .+...+....+.+.....++||+.+=|=  ..|.-....-||        .+++.|.++++.+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~pv~~~GGI~~~~~~~~l~~GAdgV~vGsai~~a~d~~~~~~~l  252 (254)
T 1vc4_A          190 INLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVLIGTSLMRAPDLEAALREL  252 (254)
T ss_dssp             BCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTTTCSEEEECHHHHTSSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHH
T ss_conf             138889886320002577988998469999999999986999999883640799999999984


No 200
>>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Plasmodium falciparum} (A:)
Probab=57.82  E-value=11  Score=16.70  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=69.3

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-ECCCCCH
Q ss_conf             265289998478425899999986305975899972100111103679999999974100357677758999-5168884
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL-ARGGGSI  221 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii-~RGGGS~  221 (529)
                      ..|.-+-+....-+++.-|+-..+-+    .-+++--...+......+.+.+..+...+.      -.+++. -=+||+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~i~~~~~~----g~ii~~~~~~~~~~~~~i~~~l~~a~~~~~------~~i~l~InSpGG~v   82 (215)
T 2f6i_A           13 GRENLYFQGHMDIKDMKKDVKLFFFK----KRIIYLTDEINKKTADELISQLLYLDNINH------NDIKIYINSPGGSI   82 (215)
T ss_dssp             ---------CCCCSCSSHHHHHHHHT----TTEEEECSCBCHHHHHHHHHHHHHHHHHCC------SCEEEEEEECCBCH
T ss_pred             CCCCHHHHCCCCCCCCCHHHHHHHHC----CCEEEECCEECHHHHHHHHHHHHHHHCCCC------CCEEEEEECCCHHH
T ss_conf             97423542556513241148999864----858997880178999999999999756898------78599998975036


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCCCCCCCH
Q ss_conf             44220076999999974890488520577--752589886412377721
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYAADLRAPTPT  268 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~VAD~Ra~TPT  268 (529)
                      .     .-+.+.++|-.++.||++-|.+-  ---+++-..+|.+.-.|+
T Consensus        83 ~-----~~~~i~~~i~~~~~pv~~~v~g~aaS~g~~ia~a~d~~~~~~~  126 (215)
T 2f6i_A           83 N-----EGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSL  126 (215)
T ss_dssp             H-----HHHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEEC
T ss_pred             H-----HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCC
T ss_conf             7-----7899998998627974899824431056788861687751325


No 201
>>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} (A:)
Probab=57.68  E-value=11  Score=16.68  Aligned_cols=83  Identities=13%  Similarity=0.225  Sum_probs=58.2

Q ss_pred             CCCCEEEEEECCC-------------HHHHHHHHHHH---HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             2652899984784-------------25899999986---3059758999721001111036799999999741003576
Q gi|254780791|r  143 FIPKIIAVITSPT-------------GAVIRDILQRI---SCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTC  206 (529)
Q Consensus       143 ~~p~~i~vits~~-------------~a~~~D~~~~~---~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~  206 (529)
                      ..-.+|-||-.|+             ..-+.|+...+   .....+++..|-+=.-|     +|+..|..+..       
T Consensus         4 m~~~kilviNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG-----elId~I~~a~~-------   71 (156)
T 1gtz_A            4 LANAPIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEG-----ELVDWIHEARL-------   71 (156)
T ss_dssp             TTTSCEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHH-----HHHHHHHHHHH-------
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHH-----HHHHHHHHHHC-------
T ss_conf             678948999688800058878871885699999999999999839814360025399-----99999999762-------


Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCC-CEEE
Q ss_conf             7775899951688844422007699999997489-0488
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSS-IPII  244 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~-iPVi  244 (529)
                       .+|.|||==||      |.+-...+..|+..++ +|+|
T Consensus        72 -~~dgiIiNpga------~THtSvAl~DAl~~~~~~P~v  103 (156)
T 1gtz_A           72 -NHCGIVINPAA------YSHTSVAILDALNTCDGLPVV  103 (156)
T ss_dssp             -HCSEEEEECTT------HHHHCHHHHHHHHTSTTCCEE
T ss_pred             -CCCEEEECCHH------HHHHHHHHHHHHHHCCCCCEE
T ss_conf             -57249976514------411327699999853358779


No 202
>>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} (A:)
Probab=57.56  E-value=9.6  Score=17.28  Aligned_cols=18  Identities=22%  Similarity=0.302  Sum_probs=14.7

Q ss_pred             CCCCEEEEEEECCCCEEE
Q ss_conf             888627999874894799
Q gi|254780791|r   48 HSSGHAYFSLKDNHSRID   65 (529)
Q Consensus        48 ~~sGH~Yf~lkd~~a~i~   65 (529)
                      .++|+|||.||+.+.+|=
T Consensus         8 ~~~g~~~f~Lka~NgqvI   25 (64)
T 3bid_A            8 DAKGEYRWRLKAANHEII   25 (64)
T ss_dssp             CTTSCEEEEEECTTSCEE
T ss_pred             CCCCCEEEEEEECCCCEE
T ss_conf             789989999992899999


No 203
>>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:1-115)
Probab=57.39  E-value=11  Score=16.89  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             899972100111103679999999974100357677758999516888
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ..+++|..+      +++.++++.+++.+        .+=+++||||.
T Consensus        63 ~~Vv~P~~~------~eV~~~v~~~~~~~--------~i~i~~rggGh   96 (115)
T 2exr_A           63 LAVVRPVGP------EDIAGAVKAALRSD--------KLTVAARGNGH   96 (115)
T ss_dssp             SEEEECSSH------HHHHHHHHHHHHSS--------SCCEEEESSSC
T ss_pred             CEEEECCCH------HHHHHHHHHHHHCC--------CCEEEEECCCC
T ss_conf             579961999------99999999999728--------90499987980


No 204
>>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} (A:)
Probab=57.31  E-value=11  Score=16.64  Aligned_cols=74  Identities=15%  Similarity=0.088  Sum_probs=49.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      .+||||--+.  .+.|+++.++++- +++.++|..-                       ...++|.|||.=|-++..|..
T Consensus         2 ~~I~ii~~~~--~~~~~~~~l~~~G-~~v~~~~~~~-----------------------~l~~~Dgiii~GGp~~~~~~~   55 (196)
T 2nv0_A            2 LTIGVLGLQG--AVREHIHAIEACG-AAGLVVKRPE-----------------------QLNEVDGLILPGGESTTMRRL   55 (196)
T ss_dssp             CEEEEECSSS--CCHHHHHHHHHTT-CEEEEECSGG-----------------------GGGGCSEEEECCSCHHHHHHH
T ss_pred             CEEEEEEECC--CHHHHHHHHHHCC-CCEEEECCHH-----------------------HHHHCCEEEECCCCCHHHHHH
T ss_conf             3999997078--1999999999879-9499989989-----------------------982088799869872799997


Q ss_pred             HCC--HHHHHHHHHHCCCEEEE
Q ss_conf             007--69999999748904885
Q gi|254780791|r  226 HFN--DEMIVRAIANSSIPIIS  245 (529)
Q Consensus       226 ~FN--~e~laraI~~~~iPVis  245 (529)
                      ..+  ...+++...+..+||+-
T Consensus        56 ~~~~~~~~~i~~~~~~~~PilG   77 (196)
T 2nv0_A           56 IDTYQFMEPLREFAAQGKPMFG   77 (196)
T ss_dssp             HHHTTCHHHHHHHHHTTCCEEE
T ss_pred             HHHCCCCCHHHHHCCCCCEEEE
T ss_conf             5322001022310246854687


No 205
>>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus HB8} (A:1-151,A:271-301)
Probab=56.59  E-value=12  Score=16.55  Aligned_cols=120  Identities=13%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999976540122610016310265289998478425899999986305975899-972100111103679999999974
Q gi|254780791|r  121 EKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVKVQGDECPKEIANAILQLNT  199 (529)
Q Consensus       121 e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~vQG~~a~~~i~~ai~~~~~  199 (529)
                      ++++.-|..-..|..+++.+-|.-=+.|+.+=-.+|---+==......+-+..++ +-|...|= +-.+++......+..
T Consensus        21 ~ei~~ll~~A~~lk~~~~~~~~L~gk~i~llF~e~StRTR~SFe~A~~~LGg~~i~l~~~~s~~-~kgEs~~Dtarvls~   99 (182)
T 2ef0_A           21 KELQALLDLAEQLKRERYRGEDLKGKVLALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVGI-GEREPVRDVAKNLER   99 (182)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEGGGSCT-TTCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHC
T ss_conf             9999999999998746335765789889998447871189999999997225511254310123-332119999987630


Q ss_pred             HCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE-ECCC-CCCHHHHHH
Q ss_conf             10035767775899951688844422007699999997489048852-0577-752589886
Q gi|254780791|r  200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA-IGHE-TDWTLADYA  259 (529)
Q Consensus       200 ~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg-IGHE-~D~Tl~D~V  259 (529)
                      +        +| +|++|+.         ....+-.....+.+|||.| -||| .=-.|+|+-
T Consensus       100 y--------~D-~iviR~~---------~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~  143 (182)
T 2ef0_A          100 F--------VE-GIAARVF---------RHETVEALARHAKVPVVNALSDRAHPLQALADLL  143 (182)
T ss_dssp             T--------CS-EEEEECS---------SHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHH
T ss_pred             C--------CC-EEEEEEC---------CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             3--------55-0358952---------6220999996468873446675879999999999


No 206
>>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} (A:)
Probab=56.28  E-value=12  Score=16.51  Aligned_cols=50  Identities=14%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             1036799999999741003576777589995168-8844422007699999997489048852
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                      .....|++..+..          ++|+||+++-| |.+.+++-=+  ..-+.+-.|++||+.=
T Consensus       111 ~~~~~I~~~a~~~----------~~dliVlG~~~~~~~~~~~~Gs--~~~~vl~~~~~pVlvV  161 (175)
T 2gm3_A          111 DPKDVICQEVKRV----------RPDFLVVGSRGLGRFQKVFVGT--VSAFCVKHAECPVXTI  161 (175)
T ss_dssp             CHHHHHHHHHHHH----------CCSEEEEEECCCC--------C--HHHHHHHHCSSCEEEE
T ss_pred             CHHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCCCCC--HHHHHHHCCCCCEEEE
T ss_conf             8899999999983----------5756885478998666562386--9999983789898999


No 207
>>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} (A:1-218)
Probab=56.15  E-value=12  Score=16.49  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=44.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH--
Q ss_conf             289998478425899999986305975899972100111103679999999974100357677758999516888444--
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED--  223 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD--  223 (529)
                      .+|+||.-.++- ..++.+-|...- ..+.+++..-                     ......+|.|||-=||.+..+  
T Consensus         5 ~~I~vid~~~~~-~~~~~~~l~~~g-~~~~vv~~~~---------------------~~~l~~~dgiIlpGg~~~~~~~~   61 (218)
T 1jvn_A            5 PVVHVIDVESGN-LQSLTNAIEHLG-YEVQLVKSPK---------------------DFNISGTSRLILPGVGNYGHFVD   61 (218)
T ss_dssp             CEEEEECCSCSC-CHHHHHHHHHTT-CEEEEESSGG---------------------GCCSTTCSCEEEEECSCHHHHHH
T ss_pred             CEEEEEECCCCH-HHHHHHHHHHCC-CCEEEEECCC---------------------HHHHHCCCEEEECCCCCHHHHHH
T ss_conf             989999799877-999999999869-9769996878---------------------66884599899899997799999


Q ss_pred             -HHHCCHHHHHHHHHHCCCEEE
Q ss_conf             -220076999999974890488
Q gi|254780791|r  224 -LWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       224 -L~~FN~e~laraI~~~~iPVi  244 (529)
                       .|......+.+...+..+||+
T Consensus        62 ~~~~~~~~~~i~~~~~~~~Pil   83 (218)
T 1jvn_A           62 NLFNRGFEKPIREYIESGKPIM   83 (218)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCEE
T ss_pred             HHHHCCCHHHHHHHHHCCCCEE
T ss_conf             9998786999999998699499


No 208
>>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} (A:1-124)
Probab=56.02  E-value=12  Score=16.47  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH--HCCHHHH
Q ss_conf             42589999998630597589997210011110367999999997410035767775899951688844422--0076999
Q gi|254780791|r  155 TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW--HFNDEMI  232 (529)
Q Consensus       155 ~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~--~FN~e~l  232 (529)
                      +-..++.+++..-..|++++....          +--+|++.+...       .||+|++        |+.  ..|-.++
T Consensus        10 Dd~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~l~~~-------~~dlil~--------D~~mP~~~G~el   64 (124)
T 1kgs_A           10 DERDLADLITEALKKEXFTVDVCY----------DGEEGXYXALNE-------PFDVVIL--------DIXLPVHDGWEI   64 (124)
T ss_dssp             SSHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEE--------ESCCSSSCHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE--------ECCCCCCCCCCH
T ss_conf             999999999999998799999989----------999999999728-------9989999--------467765431010


Q ss_pred             HHHHHHCC--CEEEEEECCCCCC
Q ss_conf             99997489--0488520577752
Q gi|254780791|r  233 VRAIANSS--IPIISAIGHETDW  253 (529)
Q Consensus       233 araI~~~~--iPVisgIGHE~D~  253 (529)
                      ++.+.+.+  +|||--.|+..+.
T Consensus        65 ~~~~~~~~~~~pii~lt~~~~~~   87 (124)
T 1kgs_A           65 LKSXRESGVNTPVLXLTALSDVE   87 (124)
T ss_dssp             HHHHHHTTCCCCEEEEESSCHHH
T ss_pred             HHHHHCCCCCCCEEECCCCCCHH
T ss_conf             12211134567532023344167


No 209
>>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* (A:)
Probab=54.95  E-value=12  Score=16.34  Aligned_cols=93  Identities=14%  Similarity=0.125  Sum_probs=57.6

Q ss_pred             CEEEEEECC-----CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCC
Q ss_conf             289998478-----42589999998630597589997210011110367999999997410035767775899951-688
Q gi|254780791|r  146 KIIAVITSP-----TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGG  219 (529)
Q Consensus       146 ~~i~vits~-----~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGG  219 (529)
                      .|||||.|.     +.+-+.+.+..+.....+.++-.|-.+       ||--+++++-...      +||.||-.= =|+
T Consensus         3 ~ri~IV~s~fn~~i~~~ll~ga~~~l~~~~~i~v~~VPGa~-------EiP~a~~~l~~~~------~~DavIaLG~VGe   69 (156)
T 2b99_A            3 KKVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPGIK-------DLPVACKKLLEEE------GCDIVMALGMPGK   69 (156)
T ss_dssp             CEEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESSGG-------GHHHHHHHHHHHS------CCSEEEEEECCCS
T ss_pred             CEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH-------HHHHHHHHHHHCC------CCCEEEEEEEEEC
T ss_conf             77999983411888999999999972999747999878676-------8999999998548------8529999988616


Q ss_pred             CHHHHHHCCHHHHHHHH----HHCCCEEEEEECCCCCC
Q ss_conf             84442200769999999----74890488520577752
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAI----ANSSIPIISAIGHETDW  253 (529)
Q Consensus       220 S~eDL~~FN~e~laraI----~~~~iPVisgIGHE~D~  253 (529)
                      .  +-.-|=-..+.+.+    ....+||+.||=++...
T Consensus        70 T--~H~e~V~~~vs~gl~~v~l~~~~PV~~gvlt~~~e  105 (156)
T 2b99_A           70 A--EKDKVCAHEASLGLMLAQLMTNKHIIEVFVHEDEA  105 (156)
T ss_dssp             S--HHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGS
T ss_pred             C--CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf             6--63212199999999999998789989873578657


No 210
>>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303)
Probab=54.71  E-value=12  Score=16.31  Aligned_cols=102  Identities=20%  Similarity=0.170  Sum_probs=68.4

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEE----------------ECCC-----CC-----------CCHHH
Q ss_conf             5289998478-42589999998630---597589997----------------2100-----11-----------11036
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIF----------------PVKV-----QG-----------DECPK  188 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~----------------p~~v-----QG-----------~~a~~  188 (529)
                      .+||||+||- ...++...++-+-+   .+..+|+-+                +-.|     ||           ...++
T Consensus         1 mkrI~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGtiLgtsR~~~~~~~~   80 (182)
T 1zxx_A            1 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEEE   80 (182)
T ss_dssp             CCEEEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             98899988578737799999999999997899899987306874689917799999876773377401357777555556


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCH
Q ss_conf             79999999974100357677758999516888444220076999999974890488520577752589886412377721
Q gi|254780791|r  189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPT  268 (529)
Q Consensus       189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPT  268 (529)
                      ..-++++.+....       .|.+|++=|-||..         -|..+++..+||| ||-.-+|-       |+-=-|||
T Consensus        81 ~~~~~~~~l~~~~-------Id~LivIGGdGS~~---------~a~~L~~~gi~vI-gIPkTIDN-------Di~GG~Pt  136 (182)
T 1zxx_A           81 GQLAGIEQLKKHG-------IDAVVVIGGDGSYH---------GALQLTRHGFNSI-GLPGTIDN-------DIPGGTPT  136 (182)
T ss_dssp             HHHHHHHHHHHTT-------CCEEEEEECHHHHH---------HHHHHHHTTCCEE-EEEEETTC-------CCTCSCCC
T ss_pred             HHHHHHHHHHHHC-------CCEEEEECCCCHHH---------HHHHHHHCCCCCC-CEEEEECC-------CCCCCCCC
T ss_conf             6777888998707-------88899967972799---------9998754246644-30233248-------88779999


Q ss_pred             HH
Q ss_conf             45
Q gi|254780791|r  269 GA  270 (529)
Q Consensus       269 aA  270 (529)
                      |-
T Consensus       137 a~  138 (182)
T 1zxx_A          137 VS  138 (182)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             89


No 211
>>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305)
Probab=54.66  E-value=12  Score=16.30  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEE----------------CCCCC----------------CCHHH
Q ss_conf             528999847-842589999998630---5975899972----------------10011----------------11036
Q gi|254780791|r  145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFP----------------VKVQG----------------DECPK  188 (529)
Q Consensus       145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p----------------~~vQG----------------~~a~~  188 (529)
                      .|||||+|| -...++...++-+-+   .++++|+-+.                ..|.|                -....
T Consensus         1 mKrI~IltsGGdaPGlNa~Ir~vv~~a~~~g~ev~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~~~~~   80 (186)
T 3pfk_A            1 MKRIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEE   80 (186)
T ss_dssp             CCEEEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCGGGSSHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCH
T ss_conf             98899987688768999999999999997799999984156875679951599899987986485110458888654310


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC--CCCC
Q ss_conf             79999999974100357677758999516888444220076999999974890488520577752589886412--3777
Q gi|254780791|r  189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL--RAPT  266 (529)
Q Consensus       189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~--Ra~T  266 (529)
                      ..-++++.+.+..       .|.+|++=|-||..         -|..+++..|||| ||-.-+|-       |+  |--|
T Consensus        81 ~~~~~~~~l~~~~-------Id~LivIGGdgS~~---------~a~~L~e~gi~vi-giPkTIDN-------Di~QRGG~  136 (186)
T 3pfk_A           81 GQKKGIEQLKKHG-------IQGLVVIGGDGSYQ---------GAKKLTEHGFPCV-GVPGTIDN-------DIPQRGGS  136 (186)
T ss_dssp             HHHHHHHHHHHHT-------CCEEEEEECHHHHH---------HHHHHHHTTCCEE-EEEBCSSC-------CCTGGCSC
T ss_pred             HHHHHHHHHHHHC-------CCEEEEECCCHHHH---------HHHHHHHCCCCEE-EEEEECCC-------CCCHCCCC
T ss_conf             1557999999836-------76599945847999---------9999873367555-31112268-------88760799


Q ss_pred             CHHH
Q ss_conf             2145
Q gi|254780791|r  267 PTGA  270 (529)
Q Consensus       267 PTaA  270 (529)
                      |||-
T Consensus       137 Pta~  140 (186)
T 3pfk_A          137 PTAF  140 (186)
T ss_dssp             CCHH
T ss_pred             CCHH
T ss_conf             9778


No 212
>>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} (A:1-185,A:357-384)
Probab=54.37  E-value=12  Score=16.27  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH--HHHHHHCCCEEEEEE------
Q ss_conf             972100111103679999999974100357677758999516888444220076999--999974890488520------
Q gi|254780791|r  176 IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI--VRAIANSSIPIISAI------  247 (529)
Q Consensus       176 ~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l--araI~~~~iPVisgI------  247 (529)
                      -+...+-|.+-..++..++..+...-..   .+||+|++.      .|-    .+.+  |-+-+...|||+-=-      
T Consensus        57 ~~~l~~~~~~~~~~~~~~i~~l~~vl~~---~kPDlVlV~------GD~----~~~la~AlaA~~~~IPVaHieaGlrs~  123 (213)
T 1vgv_A           57 DLNIXQPGQGLTEITCRILEGLKPILAE---FKPDVVLVH------GDT----TTTLATSLAAFYQRIPVGHVEAGLRTG  123 (213)
T ss_dssp             ECCCCSTTSCHHHHHHHHHHHHHHHHHH---HCCSEEEEE------TTC----HHHHHHHHHHHTTTCCEEEESCCCCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCEEE------CCC----CCHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf             5235899999999999999864888974---466540320------365----311348999874164389862244667


Q ss_pred             ----C--CCCCCHHHHHHHCCC-CCCCHHHH
Q ss_conf             ----5--777525898864123-77721456
Q gi|254780791|r  248 ----G--HETDWTLADYAADLR-APTPTGAA  271 (529)
Q Consensus       248 ----G--HE~D~Tl~D~VAD~R-a~TPTaAA  271 (529)
                          |  =|...-++|-.||+- +||+.++.
T Consensus       124 d~~~g~~ee~~R~~id~la~lhF~~t~~~r~  154 (213)
T 1vgv_A          124 DLYSPWPEEANRTLTGHLAXYHFSPTETSRQ  154 (213)
T ss_dssp             CTTSSTTHHHHHHHHHTTCSEEEESSHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf             7321463666665314324088742588998


No 213
>>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} (A:42-220)
Probab=54.24  E-value=13  Score=16.25  Aligned_cols=121  Identities=12%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             CCCCCCC-CCCHHHHHHHH-----HHHHHH---------C--CCCEEEEEEECCCCCCCCC--C----EEEEEEECCCCE
Q ss_conf             8888898-62299999999-----999740---------0--1718999997054356888--6----279998748947
Q gi|254780791|r    7 KNSLDHP-EYSVSELSYHL-----KHIVES---------N--LSHVCVRGEISGYRGIHSS--G----HAYFSLKDNHSR   63 (529)
Q Consensus         7 ~~~~~~~-~~svs~l~~~i-----~~~l~~---------~--~~~~~v~gEis~~~~~~~s--G----H~Yf~lkd~~a~   63 (529)
                      ||..+.. ++.+.++....     -..++.         +  ...|-|.|-|.+.+.....  |    -.-|+|=|..+.
T Consensus         2 sPt~~~~v~l~i~DI~~l~~~~~~~~~~~~~~~~i~fy~NhPI~~V~i~G~VV~~~~k~~~~~~~r~~~~~~~iDD~SG~   81 (179)
T 3kf8_A            2 APTFDKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGI   81 (179)
T ss_dssp             STTTTSEEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSS
T ss_pred             CCCCCCEEEEEEEEHHHCCCHHEECCCHHHCCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCC
T ss_conf             75557546478843121752210247366412648999876518999999999999723544576653499999568999


Q ss_pred             EEEEEECCCCCC-----CCC-CCCCCCEEEEEEEEE-EE-----CCCCEEEEEEEEEEECC--CCHHHHHHHHHHHHH
Q ss_conf             999997352105-----866-814598899999966-75-----28843799999710168--007999999999976
Q gi|254780791|r   64 IDAIIWKGTLNK-----IEF-LPEEGIEFLVIGKIT-TF-----PGSSKYQIIIESLIPSG--SGTLLTALEKRKKKL  127 (529)
Q Consensus        64 i~~~~~~~~~~~-----~~~-~~~~G~~v~~~g~~~-~y-----~~~g~~ql~v~~i~~~g--~G~l~~~~e~lk~~L  127 (529)
                      +.|+.|+..-..     ++. ..-.|..+-+.|.+. +|     .-+|..||.|+.+...+  -.+|..+.+-.++.+
T Consensus        82 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~i~~v~g~i~~t~r~~rqi~ve~~~~~~d~n~~~~~Ei~~W~~~~  159 (179)
T 3kf8_A           82 DSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRM  159 (179)
T ss_dssp             SCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             468999957632356562444467684699987861054202223245538999999994367742779999999999


No 214
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306)
Probab=53.87  E-value=13  Score=16.21  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHC-CC--EEEEEEE-----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             289998478425899999986305-97--5899972-----100111103679999999974100357677758999516
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCR-FP--LRVIIFP-----VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r-~p--~~~~~~p-----~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      .++||+|+.++.-.+.+...+..- ++  +..++..     +.+=|+.-...|..|...           .+..|.+.||
T Consensus        54 ~~~~ivTn~~~~~~~~~~~~L~~~Gl~~~fd~ii~s~~p~~~l~VGDs~~~Di~~a~~a-----------G~~ti~v~~g  122 (166)
T 2oyc_A           54 KAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSDPARTLXVGDRLETDILFGHRC-----------GXTTVLTLTG  122 (166)
T ss_dssp             CEEEEEECCCSSCHHHHHHHHHHTTCCSCCGGGEEEHCGGGEEEEESCTTTHHHHHHHH-----------TCEEEEESSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHEEEECCCCHHHHHHHHHC-----------CCEEEEECCC
T ss_conf             98899958999999999999874377643211200149889788689762679999987-----------9919998999


Q ss_pred             CCCHHHHHHC
Q ss_conf             8884442200
Q gi|254780791|r  218 GGSIEDLWHF  227 (529)
Q Consensus       218 GGS~eDL~~F  227 (529)
                      ++..+++...
T Consensus       123 ~~~~~~~~~~  132 (166)
T 2oyc_A          123 VSRLEEAQAY  132 (166)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             9987898753


No 215
>>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} (A:1-140)
Probab=53.58  E-value=13  Score=16.17  Aligned_cols=113  Identities=19%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             CCCCCCCCCEEEEEECCCH---H---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             1631026528999847842---5---899999986305975899972100111103679999999974100357677758
Q gi|254780791|r  138 KNPIPFIPKIIAVITSPTG---A---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDI  211 (529)
Q Consensus       138 k~~lP~~p~~i~vits~~~---a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~  211 (529)
                      ..+.+.-|++|.||-.|.+   .   .+..+...+. ++.+.+.++.+.-.  +...++   ++.+..       ..+|+
T Consensus        17 ~~~~~~~~~~~~vi~Np~sG~~~~~~~~~~i~~~l~-~~g~~~~~~~t~~~--~~~~~~---~~~~~~-------~~~~~   83 (140)
T 2qv7_A           17 PRGSHXXRKRARIIYNPTSGKEQFKRELPDALIKLE-KAGYETSAYATEKI--GDATLE---AERAXH-------ENYDV   83 (140)
T ss_dssp             --CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHH-HTTEEEEEEECCST--THHHHH---HHHHTT-------TTCSE
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HCCCEEEEEECCCC--CHHHHH---HHHHHH-------CCCCE
T ss_conf             688424664599999967888757999999999999-87992999982896--669999---998887-------69988


Q ss_pred             EEEECCCCCHHHHHHCCHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHCCCCCC-CHHHHHHH
Q ss_conf             999516888444220076999999974890-4885205777525898864123777-21456763
Q gi|254780791|r  212 IILARGGGSIEDLWHFNDEMIVRAIANSSI-PIISAIGHETDWTLADYAADLRAPT-PTGAAEMA  274 (529)
Q Consensus       212 iii~RGGGS~eDL~~FN~e~laraI~~~~i-PVisgIGHE~D~Tl~D~VAD~Ra~T-PTaAAEla  274 (529)
                      ||++=|-|.+-+        ++.++..++. |.|.-|-==   |-=||.=++..++ |..|++.+
T Consensus        84 ivv~GGDGTl~~--------vi~~l~~~~~~~~i~iiP~G---T~N~fAr~lg~~~~~~~a~~~i  137 (140)
T 2qv7_A           84 LIAAGGDGTLNE--------VVNGIAEKPNRPKLGVIPXG---TVNDFGRALHIPNDIXGALDVI  137 (140)
T ss_dssp             EEEEECHHHHHH--------HHHHHTTCSSCCEEEEEECS---SCCHHHHHTTCCSSHHHHHHHH
T ss_pred             EEEECCCCHHHH--------HHHHHHHHCCCCCEEEEECC---CCCCCHHHHCCCCHHHHHHHHH
T ss_conf             999867757999--------99999863557617999558---9974278604882388898876


No 216
>>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} (A:)
Probab=53.47  E-value=13  Score=16.16  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf             718999997054356888627999874894799999735210586681459889999996675288437999997101
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP  110 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~  110 (529)
                      ..|-++|.|..  .   -||=.|..+|....|..-|=...+....+.|  .++|.+.|+|+  .....-.+.|..|+.
T Consensus        38 ~~V~L~G~Iv~--~---i~~d~Y~F~D~tG~I~VeId~~~w~G~~v~p--~~~VrI~GevD--k~~~~~~IdV~~i~~  106 (109)
T 1nnx_A           38 TWVTLRGNIVE--R---ISDDLYVFKDASGTINVDIDHKRWNGVTVTP--KDTVEIQGEVD--KDWNSVEIDVKQIRK  106 (109)
T ss_dssp             EEEEEEEEEEE--E---EETTEEEEEETTEEEEEECCGGGSTTCCCCT--TSCEEEEEEEE--EETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEEE--E---ECCCEEEEECCCCCEEEEECHHHCCCCCCCC--CCEEEEEEEEE--CCCCCEEEEEEEEEE
T ss_conf             84999889997--8---5895289988996499997845538966699--99899999992--899963899999997


No 217
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:1-108,A:240-290)
Probab=53.36  E-value=13  Score=16.14  Aligned_cols=82  Identities=20%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-4258999999863---05975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -+.||||.+. +.--+..++.-+.   +.+++.+.++++.-...+   ....+++.+...       ++|.||+.-+.  
T Consensus         8 S~~IGVIip~l~npf~~~il~gIe~aa~~~Gy~lil~~s~~~d~e---~q~~~i~~li~~-------~vDGIIi~~~~--   75 (159)
T 3clk_A            8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPE---EQKHALLTAIER-------PVXGILLLSIA--   75 (159)
T ss_dssp             CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSS-------CCSEEEEESCC--
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH---HHHHHHHHHHHC-------CCCEEEEEHHH--
T ss_conf             998999909997689999999999999986998999968999999---999999999856-------95467520000--


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             4442200769999999748904885
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                             .+......+.+..||||.
T Consensus        76 -------~~~~~i~~l~~~gIPvVl   93 (159)
T 3clk_A           76 -------LTDDNLQLLQSSDVPYCF   93 (159)
T ss_dssp             -----------CHHHHHCC--CEEE
T ss_pred             -------HHHHHHHHHHHHCCCCCC
T ss_conf             -------135689998741021112


No 218
>>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} (A:)
Probab=53.35  E-value=13  Score=16.14  Aligned_cols=81  Identities=17%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             CEEEEEECCC-------------HHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             2899984784-------------25899999986305---9758999721001111036799999999741003576777
Q gi|254780791|r  146 KIIAVITSPT-------------GAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       146 ~~i~vits~~-------------~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      |||-||-.|+             ..-+.|+...+++.   ..+++..|-+=--|     +|+..|..+..        .+
T Consensus         1 kkilviNGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG-----~lid~i~~a~~--------~~   67 (143)
T 1gqo_A            1 PHFLILNGPNVNRLGSREPEVFGRQTLTDIETDLFQFAEALHIQLTFFQSNHEG-----DLIDAIHEAEE--------QY   67 (143)
T ss_dssp             CEEEEEECTTGGGTTSSCHHHHCSCCHHHHHHHHHHHHHHHTCEEEEEECSCHH-----HHHHHHHHHTT--------TC
T ss_pred             CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHH-----HHHHHHHHHHC--------CC
T ss_conf             979998088801058878874786599999999999999759960042555599-----99999998603--------67


Q ss_pred             CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             589995168884442200769999999748904885
Q gi|254780791|r  210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      |.|||==||      |.+-+..+..|+..+++|+|-
T Consensus        68 dgiIiNpga------~ThtS~al~DAl~~~~~P~VE   97 (143)
T 1gqo_A           68 SGIVLNPGA------LSHYSYAIRDAVSSISLPVVE   97 (143)
T ss_dssp             SEEEEECGG------GGGTCHHHHHHHHTSCSCEEE
T ss_pred             CEEEECCHH------HHHHCEEHHHHHHHCCCCEEE
T ss_conf             568953313------442002379999854999899


No 219
>>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A (A:)
Probab=53.33  E-value=13  Score=16.14  Aligned_cols=84  Identities=21%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             26528999847842589999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      ..++||-||-...  ..+.++...-+.|++++..+.+          --+|++.+...       .||+||+-      -
T Consensus         3 ~~~~~ILiVDdd~--~~~~~l~~~L~~~g~~v~~a~~----------~~~al~~l~~~-------~~d~iilD------~   57 (127)
T 2gkg_A            3 HMSKKILIVESDT--ALSATLRSALEGRGFTVDETTD----------GKGSVEQIRRD-------RPDLVVLA------V   57 (127)
T ss_dssp             ---CEEEEECSCH--HHHHHHHHHHHHHTCEEEEECC----------HHHHHHHHHHH-------CCSEEEEE------S
T ss_pred             CCCCCEEEEECCH--HHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHHC-------CCCEEEEE------E
T ss_conf             6488589998999--9999999999987999999868----------49999999817-------99799743------0


Q ss_pred             HHH-HCCHHHHHHHHHH----CCCEEEEEECCCC
Q ss_conf             422-0076999999974----8904885205777
Q gi|254780791|r  223 DLW-HFNDEMIVRAIAN----SSIPIISAIGHET  251 (529)
Q Consensus       223 DL~-~FN~e~laraI~~----~~iPVisgIGHE~  251 (529)
                      +|. ..|-+++++.|-+    +.+|||-=-+++.
T Consensus        58 ~lp~~~dG~~l~~~lr~~~~~~~ipii~~s~~~~   91 (127)
T 2gkg_A           58 DLSAGQNGYLICGKLKKDDDLKNVPIVIIGNPDG   91 (127)
T ss_dssp             BCGGGCBHHHHHHHHHHSTTTTTSCEEEEECGGG
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCH
T ss_conf             0134565779999998477779981999978960


No 220
>>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:1-119,A:196-206,A:289-340)
Probab=53.24  E-value=13  Score=16.13  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=29.6

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             6528999847842589999998630597589997
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIF  177 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~  177 (529)
                      .+.+|-||++|+|+|--.+.+.|.+++|.+++..
T Consensus         5 ~k~~IIVI~GPTGSGKStLa~~Lae~~~~eiI~~   38 (182)
T 3d3q_A            5 TKPFLIVIVGPTASGKTELSIEVAKKFNGEIISG   38 (182)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             8895699989772169999999999879979950


No 221
>>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:1-115,A:228-286)
Probab=53.24  E-value=13  Score=16.13  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             CCCCCEEEEE-ECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             0265289998-4784258999999863059758999721--001111036799999999741003576777589995168
Q gi|254780791|r  142 PFIPKIIAVI-TSPTGAVIRDILQRISCRFPLRVIIFPV--KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       142 P~~p~~i~vi-ts~~~a~~~D~~~~~~~r~p~~~~~~p~--~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      +...+.|||+ +.-+|.+.-++++.+-...++ +++.+.  .==|....++|.+-...+-..-+.   ..+|+|||    
T Consensus        19 ~~~~~~IgifdsG~Ggltv~~~i~~~lp~~~~-iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~---~g~~~ivi----   90 (174)
T 2jfq_A           19 SHMNKPIGVIDSGVGGLTVAKEIMRQLPNETI-YYLGDIGRCPYGPRPGEQVKQYTVEIARKLME---FDIKMLVI----   90 (174)
T ss_dssp             --CCSCEEEEESSSTTHHHHHHHHHHCTTCCE-EEEECTTTCCCTTSCHHHHHHHHHHHHHHHTT---SCCSEEEE----
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCEEEE----
T ss_conf             35799889996897779999999997899998-99944888988889999999999999999985---48877998----


Q ss_pred             CCHHHHHHCCHHHH-H--HHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             88444220076999-9--999748904885205777525898864
Q gi|254780791|r  219 GSIEDLWHFNDEMI-V--RAIANSSIPIISAIGHETDWTLADYAA  260 (529)
Q Consensus       219 GS~eDL~~FN~e~l-a--raI~~~~iPVisgIGHE~D~Tl~D~VA  260 (529)
                             +=|.-.. +  .--..++||||.-||.|+=.-+.++-.
T Consensus        91 -------aCNTa~a~~l~~l~~~~~iPii~~ia~~vA~~v~~~L~  128 (174)
T 2jfq_A           91 -------ACNTATAVALEYLQKTLSISVIGVIGLETAREVSALLT  128 (174)
T ss_dssp             -------CCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHHHHH
T ss_pred             -------ECCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf             -------14648999999998518997798648999999999998


No 222
>>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 2g6a_A* 2g65_A* 2g6c_A* 2g68_A* (A:1-187,A:325-359)
Probab=53.08  E-value=13  Score=16.11  Aligned_cols=107  Identities=18%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC-------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             2652899984784258999999863059758999721-------------001111036799999999741003576777
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPV-------------KVQGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~-------------~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      .-=+.|+.|=-+.|--=+==.-....+-+.+++.+..             .+||+ -.++|...+..+..+        +
T Consensus        56 l~gk~i~~lF~e~StRTR~SFe~Aa~~LG~~~i~l~~~~ss~~~e~~~~~~~~~~-kgEsi~Dta~~Ls~y--------~  126 (222)
T 1zq6_A           56 LKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGD-TEEHIAEVARVLGRY--------V  126 (222)
T ss_dssp             TTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECHHHHSCCEECSSSCCCCSS-CCEEHHHHHHHHHHH--------C
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCCCCCCCCCC-CCCCHHHHHHHHHCC--------C
T ss_conf             8999899995688612799999999984996897378875001113666311477-767899999886424--------8


Q ss_pred             CEEEEECCCCCHHHHH-HCCHHHHHHHHHHCCCEEEEEE-CCCCCCHHHHHH
Q ss_conf             5899951688844422-0076999999974890488520-577752589886
Q gi|254780791|r  210 DIIILARGGGSIEDLW-HFNDEMIVRAIANSSIPIISAI-GHETDWTLADYA  259 (529)
Q Consensus       210 D~iii~RGGGS~eDL~-~FN~e~laraI~~~~iPVisgI-GHE~D~Tl~D~V  259 (529)
                      | +|++|+..+..+-+ .-++..|-...-.+.||||.+= |...=-.|+|+-
T Consensus       127 D-~iviR~~~~~~~~~~~~~~~~l~~~a~~~~iPVIN~gd~~HPtQaLaDl~  177 (222)
T 1zq6_A          127 D-LIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHAL  177 (222)
T ss_dssp             S-EEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESSSSCCHHHHHHHHH
T ss_pred             C-EEEEECCCCCCCHHCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHH
T ss_conf             6-89996364321111140167999998766886113100110688888899


No 223
>>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes} (A:)
Probab=52.97  E-value=13  Score=16.10  Aligned_cols=35  Identities=9%  Similarity=0.393  Sum_probs=24.9

Q ss_pred             CCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             77589995168-884442200769999999748904885
Q gi|254780791|r  208 RPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       208 ~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      .+|+||+++.| +.+.-++.=..+.|++   .+|.||+.
T Consensus       101 ~~DliViG~~~~~~~~~~~Gs~~~~v~~---~a~~pVlv  136 (138)
T 3idf_A          101 DYNLLIIGSSENSFLNKIFASHQDDFIQ---KAPIPVLI  136 (138)
T ss_dssp             TCSEEEEECCTTSTTSSCCCCTTCHHHH---HCSSCEEE
T ss_pred             CCEEEEEECCCCCCCCCEECCHHHHHHH---CCCCCEEE
T ss_conf             5305999669999633431769999997---28998999


No 224
>>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:)
Probab=52.91  E-value=8.6  Score=17.71  Aligned_cols=47  Identities=9%  Similarity=0.143  Sum_probs=26.6

Q ss_pred             HHHCCCEEEEECCCCC--EE-------CCHHHCCCCCEEEEEEECEEEEEEEEECC
Q ss_conf             7731461999848988--95-------77789299986999991109999995057
Q gi|254780791|r  456 NTLKRGYTSIQDTNNN--FI-------TQKRNLATKTRILINFFDGQANAIVINKA  502 (529)
Q Consensus       456 ~~L~RGYaiv~~~~Gk--iI-------~s~~~l~~gd~i~i~l~DG~v~a~V~~k~  502 (529)
                      +.++|||-.|...+|.  +.       .....+..|+.|+-.+..|.-.-+..+..
T Consensus        24 k~f~kGfGFI~~~~g~~d~F~h~s~~~~~~~~l~~G~~V~f~~~~~~~G~~A~~V~   79 (97)
T 2ytx_A           24 CAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVR   79 (97)
T ss_dssp             CCCCSSEEEEECSSSCCCEEEETTTCCSCTTSCCSCCEEEEEECCCSSSCBEEEEE
T ss_pred             EEECCCCEEEECCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf             99116702788289996399986991220165777869999999689997888979


No 225
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:61-174,A:321-366)
Probab=52.21  E-value=13  Score=16.00  Aligned_cols=93  Identities=13%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             CCEEEEEECCCH------HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             528999847842------589999998630---59758999721001111036799999999741003576777589995
Q gi|254780791|r  145 PKIIAVITSPTG------AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       145 p~~i~vits~~~------a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      -..||||.+...      .-+.+|+.-+.+   +.++.++++++.-  ..   +..+.++.+...       ++|.+|+.
T Consensus         8 S~tIgvIip~~~~~~~~npff~~ii~gI~~~a~~~gy~lli~~~~~--~~---~~~~~i~~l~~~-------~vDGiIl~   75 (160)
T 3h5t_A            8 AGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPAS--SV---DHVSAQQLVNNA-------AVDGVVIY   75 (160)
T ss_dssp             CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCT--TC---CHHHHHHHHHTC-------CCSCEEEE
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC--CH---HHHHHHHHHHHC-------CCCCCCCC
T ss_conf             9859999766543332212678899999999863585587521332--04---789999988641-------45654211


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             16888444220076999999974890488520577752589886
Q gi|254780791|r  216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      =         ...+...++.+.+..+|+|. ||...+-.-.++|
T Consensus        76 ~---------~~~~~~~i~~L~~~~iPvV~-id~~~~~~~~~~V  109 (160)
T 3h5t_A           76 S---------VAKGDPHIDAIRARGLPAVI-ADQPAREEGMPFI  109 (160)
T ss_dssp             S---------CCTTCHHHHHHHHHTCCEEE-ESSCCSCTTCCEE
T ss_pred             C---------CCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCCCC
T ss_conf             3---------33220356666512787423-4543346777744


No 226
>>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-126)
Probab=52.18  E-value=10  Score=16.99  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEEC--CCHHHHHHHHHHHHHCCCEEEE-EEE--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             026528999847--8425899999986305975899-972--10011110367999999997410035767775899951
Q gi|254780791|r  142 PFIPKIIAVITS--PTGAVIRDILQRISCRFPLRVI-IFP--VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR  216 (529)
Q Consensus       142 P~~p~~i~vits--~~~a~~~D~~~~~~~r~p~~~~-~~p--~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R  216 (529)
                      -.-|++|+||-.  ..+.--..+++.+...+...|+ +.|  ..+.|..+-.++.+.       .     ..+|+++|+.
T Consensus         5 l~~p~~iaVvG~s~~~~~~~~~v~~~l~~~~~~~V~pVnp~~~~i~g~~~y~sl~el-------~-----~~~D~v~i~~   72 (126)
T 2csu_A            5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDI-------P-----DEIDLAIIVV   72 (126)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSC-------S-----SCCSEEEECS
T ss_pred             HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEECCEECCCCHHHC-------C-----CCCCEEEEEE
T ss_conf             269986999885799986379999999847996189978998607987576998886-------9-----9989899997


Q ss_pred             CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             688844422007699999997489048852057
Q gi|254780791|r  217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                      ......        .+++...+..++.+--+.+
T Consensus        73 p~~~~~--------~~v~e~~~~gi~~ii~~~~   97 (126)
T 2csu_A           73 PKRFVK--------DTLIQCGEKGVKGVVIITA   97 (126)
T ss_dssp             CHHHHH--------HHHHHHHHHTCCEEEECCC
T ss_pred             CHHHHH--------HHHHHHHHCCCCEEEEECC
T ss_conf             789989--------9999999849988997167


No 227
>>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} (A:)
Probab=51.23  E-value=14  Score=15.89  Aligned_cols=68  Identities=9%  Similarity=0.235  Sum_probs=40.0

Q ss_pred             CCCEEEEEECCCHHHHHH---------HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             652899984784258999---------99986305975899972100111103679999999974100357677758999
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRD---------ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D---------~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii  214 (529)
                      +|.+|.+|-..-++++.+         +...+...++ .+.++...+-|..+..-.-.--..+...       ++|+|||
T Consensus         1 ~~~~i~~iGDS~t~g~~~~~~~~~~~~~~~~l~~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~-------~~d~vii   72 (185)
T 3hp4_A            1 MDNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQS-DIVLINASISGETSGGALRRLDALLEQY-------EPTHVLI   72 (185)
T ss_dssp             -CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTC-CEEEEECCCTTCCHHHHHHHHHHHHHHH-------CCSEEEE
T ss_pred             CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHHHCC-------CCCEEEE
T ss_conf             9998999789777046888578869999999986299-8379843778765257664112443147-------9988997


Q ss_pred             ECCCC
Q ss_conf             51688
Q gi|254780791|r  215 ARGGG  219 (529)
Q Consensus       215 ~RGGG  219 (529)
                      .=|+.
T Consensus        73 ~~G~N   77 (185)
T 3hp4_A           73 ELGAN   77 (185)
T ss_dssp             ECCHH
T ss_pred             ECCCC
T ss_conf             15677


No 228
>>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum} (A:)
Probab=51.20  E-value=14  Score=15.88  Aligned_cols=113  Identities=16%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             EEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--ECCCCCHHHHHHCCHHHHHHHHH------HCCCEEE
Q ss_conf             972100111---103679999999974100357677758999--51688844422007699999997------4890488
Q gi|254780791|r  176 IFPVKVQGD---ECPKEIANAILQLNTLKEGRTCPRPDIIIL--ARGGGSIEDLWHFNDEMIVRAIA------NSSIPII  244 (529)
Q Consensus       176 ~~p~~vQG~---~a~~~i~~ai~~~~~~~~~~~~~~~D~iii--~RGGGS~eDL~~FN~e~laraI~------~~~iPVi  244 (529)
                      +..+.+.|.   .+...+++.|+.+..      .+.++.||+  -=+|||.     +..+.+.++|.      +...||+
T Consensus       231 iavi~~~g~i~~~~~~~~~~~l~~a~~------d~~vkavvlridSpGGs~-----~~s~~i~~~i~~~r~~~~~~Kpvv  299 (407)
T 2p7n_A          231 GNKVKLNVDALKAALEKLKKDFSLGDN------LDNKKAVLFPAQSKDGGI-----QGGSESDARKWAKEXGLPDAPPPG  299 (407)
T ss_dssp             -----CCHHHHHHHHHHHHHHTSCCTT------SCCSTTEEESCCCSSSCC-----CCBCHHHHHHHHHHTTCCCCCTTS
T ss_pred             CCEEEECHHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             872543689999999999975167776------444430016786776533-----467588899999981876467887


Q ss_pred             EEECCC---------CCCHHHHH-HHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             520577---------75258988-64123777214567633234677766999998887789988
Q gi|254780791|r  245 SAIGHE---------TDWTLADY-AADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRL  299 (529)
Q Consensus       245 sgIGHE---------~D~Tl~D~-VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~  299 (529)
                      .-+|.-         .+.|-||. +|+--.-|=|---....|+...+...+.-..+.+.+.++..
T Consensus       300 ~s~~~~aaSggY~ia~~~s~ad~I~a~p~t~tGSIGv~~~~~~~~~~l~k~gv~~~~i~~~~~~~  364 (407)
T 2p7n_A          300 FSCVQKAADGNWVVVVDXTPIDTXIRDVGALGSGTELELDNAKFQAWQSGFKAQEENLKNTLQTL  364 (407)
T ss_dssp             CCSEEECTTSSEEEECCCHHHHHHHHHHHHTCCCC-CCCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             33677358886367238527899887512467888875149999999999878888776479999


No 229
>>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:1-107,A:239-285)
Probab=50.59  E-value=14  Score=15.81  Aligned_cols=93  Identities=10%  Similarity=0.075  Sum_probs=56.2

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -..||||.+. +.--+.++++-+.+   ..++.+.++++.-..+    ...+.++.+...       .+|.|||+     
T Consensus         8 s~~IgvIipdl~npf~~~ii~gi~~~a~~~Gy~lvI~~~~~d~~----~~~~~i~~l~~~-------~vDGIII~-----   71 (154)
T 3c3k_A            8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLA----RSRSCLTLLSGK-------MVDGVITM-----   71 (154)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH----HHHHHTHHHHTT-------CCSEEEEC-----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH----HHHHHHHHHHCC-------CCCCCCCC-----
T ss_conf             99899996988788999999999999998599899997899989----999987665404-------55423321-----


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             444220076999999974890488520577752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                           +.+............||||. |+...+..-+++|
T Consensus        72 -----~~~~~~~~~~~l~~~IPvVl-id~~~~~~~~~~V  104 (154)
T 3c3k_A           72 -----DALSELPELQNIIGAFPWVQ-CAEYDPLSTVSSV  104 (154)
T ss_dssp             -----CCGGGHHHHHHHHTTSSEEE-ESSCCTTSSSCEE
T ss_pred             -----CCCCCHHHHHHHCCCCCEEE-EEECCCCCCCCCC
T ss_conf             -----23432899985036887899-8404787776632


No 230
>>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} (A:)
Probab=50.57  E-value=14  Score=15.81  Aligned_cols=131  Identities=16%  Similarity=0.161  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf             00799999999997654012261001631026528999847842589999-99863059758999721001111036799
Q gi|254780791|r  113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDI-LQRISCRFPLRVIIFPVKVQGDECPKEIA  191 (529)
Q Consensus       113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~-~~~~~~r~p~~~~~~p~~vQG~~a~~~i~  191 (529)
                      .|.+....+.+.+.|.-.|-.     .|.-.-|-.+.+.|.......+.. +.....+. -.+.+.|.--.=-.|.++.+
T Consensus       110 ~g~l~~ai~~~~~~l~i~~~V-----lP~t~~~v~l~a~~~dG~~v~ge~~i~~~~~~i-~~v~~~~~~~~~~~a~p~al  183 (341)
T 2p0y_A          110 KSGVFDAVQELSNXXQVDGHV-----YPAANEALTLHGKFSDGTELVGEAEITAAHKSL-ERVWVTDKNGKEPQAVQPVI  183 (341)
T ss_dssp             --CHHHHHHHHHHHTTCSSEE-----ECC----CCEEECCSSCC-----------CCCC-CCEEEC------CCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEE-----EECCCCCEEEEEEECCCCEEEEEEEEHHCCCCC-CEEEEEECCCCCCCCCHHHH
T ss_conf             498889999999985898179-----945478648999977998896467001046787-55887436877888884588


Q ss_pred             HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEE--EEE----CCCCCCHHHHHHHC
Q ss_conf             99999974100357677758999516888444220076999999974890488--520----57775258988641
Q gi|254780791|r  192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPII--SAI----GHETDWTLADYAAD  261 (529)
Q Consensus       192 ~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVi--sgI----GHE~D~Tl~D~VAD  261 (529)
                      +||+.            -|+||++=|-==..=+=.+-=..++.||.+++-|+|  +=+    |.-..+|.+|+|.-
T Consensus       184 ~AI~~------------AD~Iv~gPGSl~TSI~P~Llv~gI~eAi~~s~a~kV~I~Nl~~~~get~~~~~~d~v~a  247 (341)
T 2p0y_A          184 DAIXA------------ADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIXTQKGETDNFSDADHVRV  247 (341)
T ss_dssp             HHHHH------------CSEEEECSSCCCCCCHHHHSSHHHHHHHHHCSSEEEEECCSBC--CCSTTCBHHHHHHH
T ss_pred             HHHHC------------CCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf             99863------------99899868960776646888999999997488867997568889833369988999999


No 231
>>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} (A:)
Probab=50.49  E-value=14  Score=15.80  Aligned_cols=43  Identities=23%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCCCHHHHHH---------------CCHHHHHHHHHHCCCEEEE-EECCC
Q ss_conf             7758999516888444220---------------0769999999748904885-20577
Q gi|254780791|r  208 RPDIIILARGGGSIEDLWH---------------FNDEMIVRAIANSSIPIIS-AIGHE  250 (529)
Q Consensus       208 ~~D~iii~RGGGS~eDL~~---------------FN~e~laraI~~~~iPVis-gIGHE  250 (529)
                      .+|.|||--|+++..|+..               -.+..+.+...+..+||+- --||+
T Consensus        61 ~~dgiil~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PilGIClG~Q  119 (254)
T 3fij_A           61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGXQ  119 (254)
T ss_dssp             TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHH
T ss_pred             HCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf             67979976997888543577777445788777889999999999985998786289999


No 232
>>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:1-112)
Probab=50.19  E-value=11  Score=16.69  Aligned_cols=34  Identities=15%  Similarity=0.165  Sum_probs=25.6

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             8999721001111036799999999741003576777589995168884
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      ..++||...      ++|...++.+++         ..+-++.||||.-
T Consensus        58 ~~Vv~P~s~------~dV~~iv~~a~~---------~~~pv~~rggG~~   91 (112)
T 1wvf_A           58 SAAVTATTV------EQVQGVVKICNE---------HKIPIWTISTGRN   91 (112)
T ss_dssp             SEEEECCSH------HHHHHHHHHHHH---------HTCCEEEESSCCC
T ss_pred             CEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCCC
T ss_conf             779956989------999999999998---------7980999899988


No 233
>>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} (A:)
Probab=49.91  E-value=7.2  Score=18.39  Aligned_cols=17  Identities=18%  Similarity=0.366  Sum_probs=13.8

Q ss_pred             CCCCEEEEEEECCCCEE
Q ss_conf             88862799987489479
Q gi|254780791|r   48 HSSGHAYFSLKDNHSRI   64 (529)
Q Consensus        48 ~~sGH~Yf~lkd~~a~i   64 (529)
                      .+.|+|||.||+.+.+|
T Consensus        30 ~~~g~~rf~Lka~Ngqv   46 (83)
T 2k7i_A           30 DKAGEYRFRFKASNGET   46 (83)
T ss_dssp             CTTSCEEEEECCTTSCC
T ss_pred             CCCCCEEEEEEECCCCE
T ss_conf             88997999999799999


No 234
>>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} (H:)
Probab=49.72  E-value=14  Score=15.70  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH--
Q ss_conf             289998478425899999986305975899972100111103679999999974100357677758999516888444--
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED--  223 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD--  223 (529)
                      .||+||--.++- .+|+.+.+++.- +++.++|..                       .....+|.||| -|||+..+  
T Consensus         3 ~ri~vi~~~~~~-~~~~~~~l~~~g-~~v~~~~~~-----------------------~~l~~~dgvil-pGg~~~~~~~   56 (200)
T 1ka9_H            3 MKALLIDYGSGN-LRSAAKALEAAG-FSVAVAQDP-----------------------KAHEEADLLVL-PGQGHFGQVM   56 (200)
T ss_dssp             CEEEEECSSCSC-HHHHHHHHHHTT-CEEEEESST-----------------------TSCSSCSEEEE-CCCSCHHHHH
T ss_pred             CEEEEEECCCCH-HHHHHHHHHHCC-CCEEEECCH-----------------------HHHHHCCEEEE-CCCCCHHHHH
T ss_conf             779999789858-999999999879-969998798-----------------------99840898999-6998479998


Q ss_pred             --HHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             --2200769999999748904885
Q gi|254780791|r  224 --LWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       224 --L~~FN~e~laraI~~~~iPVis  245 (529)
                        .+......+.+...+..+||+-
T Consensus        57 ~~~~~~~~~~~i~~~~~~~~PilG   80 (200)
T 1ka9_H           57 RAFQESGFVERVRRHLERGLPFLG   80 (200)
T ss_dssp             HTTSSSCTHHHHHHHHHTTCCEEE
T ss_pred             HHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf             777655939998888866980899


No 235
>>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* (A:1-204,A:412-459)
Probab=49.33  E-value=15  Score=15.66  Aligned_cols=57  Identities=16%  Similarity=0.153  Sum_probs=33.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             99847842589999998630597--5899972100111103679999999974100357677758999516888
Q gi|254780791|r  149 AVITSPTGAVIRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       149 ~vits~~~a~~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      |.|.-|+...|....+.-..++.  -..+++|..+      .+|.++++.+...         .+=+.+||||.
T Consensus        14 g~v~~p~~~~y~~~~~~w~~~~~~~P~~Vv~P~s~------eeV~~iV~~a~~~---------~~~v~vrGgGh   72 (252)
T 2bvf_A           14 GEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSA------GDVAKSVRYACDN---------GLEISVRSGGH   72 (252)
T ss_dssp             SEEECTTSTTHHHHHCCSCTTCCCCCSEEEECCSH------HHHHHHHHHHHHH---------TCCEEEESSCC
T ss_pred             CEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCH------HHHHHHHHHHHHC---------CCEEEEECCCC
T ss_conf             25989898237999978855646788889964999------9999999999987---------97699988996


No 236
>>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304)
Probab=49.14  E-value=15  Score=15.63  Aligned_cols=86  Identities=14%  Similarity=0.068  Sum_probs=51.0

Q ss_pred             CCEEEEEE--CCCHHHHHHHHHHHHH---CC---CEEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             52899984--7842589999998630---59---758999-721001111036799999999741003576777589995
Q gi|254780791|r  145 PKIIAVIT--SPTGAVIRDILQRISC---RF---PLRVII-FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       145 p~~i~vit--s~~~a~~~D~~~~~~~---r~---p~~~~~-~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      ..+||++.  +.+..-+.++..-+.+   .+   .+.+.+ +++    +.-+.+-.+.|+.+-..       ++|.|||+
T Consensus         8 ~~~Igvivp~~~~~~f~~~i~~g~~~aa~e~~~~g~~i~i~~~~----~~d~~~q~~~i~~li~~-------~vDgIii~   76 (167)
T 3gbv_A            8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYD----PYDYNSFVATSQAVIEE-------QPDGVXFA   76 (167)
T ss_dssp             CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEEC----SSCHHHHHHHHHHHHTT-------CCSEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----CCCHHHHHHHHHHHHHC-------CCCEEEEE
T ss_conf             85899998799988899999999999999716688799999589----89999999999999975-------99989996


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf             168884442200769999999748904885205
Q gi|254780791|r  216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG  248 (529)
Q Consensus       216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG  248 (529)
                      --+..       ....+++...+..||||+=-.
T Consensus        77 p~~~~-------~~~~~i~~~~~~gIPvV~id~  102 (167)
T 3gbv_A           77 PTVPQ-------YTKGFTDALNELGIPYIYIDS  102 (167)
T ss_dssp             CSSGG-------GTHHHHHHHHHHTCCEEEESS
T ss_pred             CCCCH-------HHHHHHHHHHHCCCEEEEEEE
T ss_conf             04532-------029999999971977999960


No 237
>>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A (A:33-157,A:224-353)
Probab=48.97  E-value=15  Score=15.61  Aligned_cols=29  Identities=14%  Similarity=-0.023  Sum_probs=12.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             110367999999997410035767775899951688
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      ..+..-+.++++.++..+       .=+|+++-.||
T Consensus        91 ~~~~~K~~r~i~~a~~~~-------~Pli~l~dsgG  119 (255)
T 3k8x_A           91 PQEDEFFNKVTEYARKRG-------IPRIYLAANSG  119 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHT-------CCEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHHHCC-------CCEEEEECCCC
T ss_conf             899999999999999839-------99899965888


No 238
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:1-113,A:249-288)
Probab=48.91  E-value=15  Score=15.61  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=61.8

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      ++||||... +..-+..+++-+.+   ..++.+.++.+  .+++.+.+...+|+.+-..       ++|.||++=.....
T Consensus         2 ~~Igviip~~~~pf~~~i~~gi~~aa~~~Gy~l~i~~~--~s~~d~~~~~~~i~~li~~-------~vDGIIi~~~~~~~   72 (153)
T 1gud_A            2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS--PSEGDFQSQLQLFEDLSNK-------NYKGIAFAPLSSVN   72 (153)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC--SSTTCHHHHHHHHHHHHTS-------SEEEEEECCSSSST
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCCCCHHHHHHHHHHHHHC-------CCCEEEECCCCCCC
T ss_conf             35999979888889999999999999974998999967--8989999999999999975-------99857642543321


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH-HHCCCC
Q ss_conf             4422007699999997489048852057775258988-641237
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADY-AADLRA  264 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~-VAD~Ra  264 (529)
                             .......+.+..||||. |+.+.+..-.++ ..|-++
T Consensus        73 -------~~~~i~~l~~~gIPvV~-id~~~~~~~~~~V~~Dn~~  108 (153)
T 1gud_A           73 -------LVMPVARAWKKGIYLVN-LDEKIDMDNLKKAGGNVEA  108 (153)
T ss_dssp             -------THHHHHHHHHTTCEEEE-ESSCCCHHHHHHTTCCCSE
T ss_pred             -------CHHHHHHHHHCCCCEEE-CCCCCCCCCCCCCCCCCCC
T ss_conf             -------14899999971991762-3777654443345677563


No 239
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318)
Probab=48.58  E-value=15  Score=15.57  Aligned_cols=123  Identities=15%  Similarity=0.127  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEEECC---CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHH
Q ss_conf             99999997654012261001631-0265289998478---42589999998630---59758999721001111036799
Q gi|254780791|r  119 ALEKRKKKLLEEGLFSDQHKNPI-PFIPKIIAVITSP---TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIA  191 (529)
Q Consensus       119 ~~e~lk~~L~~eGlfd~~~k~~l-P~~p~~i~vits~---~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~  191 (529)
                      ..++..+-..+-||......+.+ ..-.+.||+|.+.   ++--+.+++.-+..   +..+.+.++.+.    +.+....
T Consensus        34 Tr~rV~~~a~elgY~~~~~a~~l~~~~~~~I~ivi~~~~~~~~f~~~ii~gi~~~~~~~gy~~~i~~~~----~d~~~~~  109 (185)
T 3dbi_A           34 TKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEKGRQLLLADGK----HSAEEER  109 (185)
T ss_dssp             --------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECT----TSHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCC----CCHHHHH
T ss_conf             999999999995898787788651178747999973045555139999999999999718478732578----8778899


Q ss_pred             HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             9999997410035767775899951688844422007699999997489048852057775258988641
Q gi|254780791|r  192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD  261 (529)
Q Consensus       192 ~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD  261 (529)
                      ..++.+...       ++|.|||+=.        ..+++.+.+.+....+||+. |+...+..-+|.|..
T Consensus       110 ~~i~~l~~~-------~vdGiIi~~~--------~~~~~~~~~~l~~~~iPvV~-id~~~~~~~~~sV~~  163 (185)
T 3dbi_A          110 QAIQYLLDL-------RCDAIXIYPR--------FLSVDEIDDIIDAHSQPIXV-LNRRLRKNSSHSVWC  163 (185)
T ss_dssp             HHHHHHHHT-------TCSEEEECCS--------SSCHHHHHHHHHHCSSCEEE-ESSCCSSSGGGEECB
T ss_pred             HHHHHHHHC-------CCCEEEECCC--------CCCHHHHHHHHHHCCCCEEE-ECCCCCCCCCCEEEC
T ss_conf             999999955-------9887997588--------77758899999854997899-367666777852532


No 240
>>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:)
Probab=48.07  E-value=15  Score=15.51  Aligned_cols=74  Identities=8%  Similarity=0.068  Sum_probs=45.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH--
Q ss_conf             289998478425899999986305975899972100111103679999999974100357677758999516888444--
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED--  223 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD--  223 (529)
                      .+|+||.=++  .+.|+.+.++++- +++.+++..                       .....+|.|||.=|.++.+|  
T Consensus         3 ~~I~vi~~~~--~~~~~~~~l~~~g-~~v~~~~~~-----------------------~~l~~~dgiil~GG~~~~~~~~   56 (191)
T 2ywd_A            3 GVVGVLALQG--DFREHKEALKRLG-IEAKEVRKK-----------------------EHLEGLKALIVPGGESTTIGKL   56 (191)
T ss_dssp             CCEEEECSSS--CHHHHHHHHHTTT-CCCEEECSG-----------------------GGGTTCSEEEECSSCHHHHHHH
T ss_pred             CEEEEEECCC--CHHHHHHHHHHCC-CCEEEECCH-----------------------HHHHCCCEEEECCCCHHHHHHH
T ss_conf             6699997786--7999999999879-969998998-----------------------9961558579769765999987


Q ss_pred             -HHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             -2200769999999748904885
Q gi|254780791|r  224 -LWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       224 -L~~FN~e~laraI~~~~iPVis  245 (529)
                       .|.-....+.+.+++..+||+-
T Consensus        57 ~~~~~~~~~~~~~~~~~~~PilG   79 (191)
T 2ywd_A           57 AREYGIEDEVRKRVEEGSLALFG   79 (191)
T ss_dssp             HHHTTHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHCCHHHHHHHHCCCCCEEEE
T ss_conf             34300101200000045415899


No 241
>>1pk6_C C1Q, complement C1Q subcomponent, C chain precursor; complement system, immunology, jellyroll, IGG, immune system; 1.85A {Homo sapiens} (C:)
Probab=47.63  E-value=15  Score=15.45  Aligned_cols=59  Identities=8%  Similarity=0.164  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCEEEEEEE-CCCCEEEEEEECCCCCCC-----------------CCCCCCCCEEEEEEE--EEEECCCCEE
Q ss_conf             05435688862799987-489479999973521058-----------------668145988999999--6675288437
Q gi|254780791|r   42 SGYRGIHSSGHAYFSLK-DNHSRIDAIIWKGTLNKI-----------------EFLPEEGIEFLVIGK--ITTFPGSSKY  101 (529)
Q Consensus        42 s~~~~~~~sGH~Yf~lk-d~~a~i~~~~~~~~~~~~-----------------~~~~~~G~~v~~~g~--~~~y~~~g~~  101 (529)
                      .-|+ ++-+|.+||+.- .....+...++++....+                 -..++.||+|.+...  ..+|...+.|
T Consensus        40 G~Ft-~p~~GvY~F~~~i~~~~~~~v~L~~n~~~~~~~~~~~~~~~~~~S~s~iL~L~~GD~V~l~l~~g~~~~~~~~~~  118 (129)
T 1pk6_C           40 GKFT-CKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSD  118 (129)
T ss_dssp             TEEE-CSSCEEEEEEEEEEESSCEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEEEEEECCCCCTTCC
T ss_pred             CEEE-CCCCCEEEEEEEECCCCEEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEECCCCCC
T ss_conf             9797-624778999998326750899999888889999666888652353159999699999999996885141467996


No 242
>>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} (A:)
Probab=47.61  E-value=13  Score=16.01  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=12.5

Q ss_pred             CCCEEEEEEECCCCEE
Q ss_conf             8862799987489479
Q gi|254780791|r   49 SSGHAYFSLKDNHSRI   64 (529)
Q Consensus        49 ~sGH~Yf~lkd~~a~i   64 (529)
                      ..|.|||.|++.+..+
T Consensus        11 ~~g~~rfrL~~~~G~~   26 (118)
T 2k49_A           11 SNDQFKFVLKAGNGEV   26 (118)
T ss_dssp             TTSCEEEEEECSSSCE
T ss_pred             CCCCEEEEEECCCCCE
T ss_conf             8997999999399988


No 243
>>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-103)
Probab=47.08  E-value=16  Score=15.39  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=25.2

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             899972100111103679999999974100357677758999516888
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ..+++|...      ++|.+.++.++.         ..+=|..||||.
T Consensus        47 ~aVv~P~s~------eeV~~iv~~a~~---------~~ipv~~rggGt   79 (103)
T 1f0x_A           47 LAVVFPGSL------LELWRVLKACVT---------ADKIILMQAANT   79 (103)
T ss_dssp             SEEECCSSH------HHHHHHHHHHHH---------TTCEEEEESSCC
T ss_pred             CEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCC
T ss_conf             679950999------999999999998---------798299978996


No 244
>>2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} (A:)
Probab=46.96  E-value=16  Score=15.37  Aligned_cols=123  Identities=20%  Similarity=0.218  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             99999999976540122610016310265289998478425899999986305975-89997210011110367999999
Q gi|254780791|r  117 LTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAIL  195 (529)
Q Consensus       117 ~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~  195 (529)
                      ....+.+.+.|.-.|     +=.|.-..|-++.+.+....-..+.+ .+-...-|. .+.+-|..+   .+..+.++||+
T Consensus       106 ~~ai~~~~~~l~v~g-----~VlP~s~~~~~l~a~~~dG~~~~gE~-~I~~~~~~i~~v~~~~~~~---~~~p~al~AI~  176 (332)
T 2ppv_A          106 GHAIKELSKVLNIKG-----QVIPSTNASVQLNAVXEDGEIVHGET-NIPKTHKKIDRVFLEPSDV---EPXNEAIEALE  176 (332)
T ss_dssp             HHHHHHHHHHTTCSS-----EEEESCSSCCEEEEEETTSCEEESTT-TSSSSCSCEEEEEEESCCC---CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC-----CEECCCCCCEEEEEEECCCCEEECEE-EEECCCCCCEEEEECCCCC---CCCHHHHHHHH
T ss_conf             799999999868995-----44257389548999986998880256-1101456632565025777---78867999985


Q ss_pred             HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEE--EEECC---CC-CCHHHHHHH
Q ss_conf             9974100357677758999516888444220076999999974890488--52057---77-525898864
Q gi|254780791|r  196 QLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPII--SAIGH---ET-DWTLADYAA  260 (529)
Q Consensus       196 ~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVi--sgIGH---E~-D~Tl~D~VA  260 (529)
                      .            -|+||++=|-==..=+-++--..++.||.+++-|+|  +=++-   || .+|.+|+|.
T Consensus       177 ~------------AD~IvigPGSlyTSIiP~Llv~gI~eAI~~s~a~kV~I~Ni~~~~Get~g~~~~d~v~  235 (332)
T 2ppv_A          177 Q------------ADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVXTQPGETDNYDVKEHID  235 (332)
T ss_dssp             H------------CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCCSCEEEECCSBCCTTTCTTCCHHHHHH
T ss_pred             C------------CCEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf             2------------9989998996076541054260589998658885797306777753336999999999


No 245
>>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str} (A:37-156)
Probab=46.82  E-value=16  Score=15.36  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=33.4

Q ss_pred             CEEEEEECCC--HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             2899984784--25899999986305975899972100111103679999999974100357677758999516
Q gi|254780791|r  146 KIIAVITSPT--GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       146 ~~i~vits~~--~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      ++|.|.|...  =.++.||++.+...- .+.+-.|+-.-.-.--+.|.+||-..+.-+       -| +||+||
T Consensus         1 kkivVat~N~kKf~vi~~il~~~~~~~-~~ml~i~Tn~aDltR~PAi~KgliAvD~sd-------AD-lvIaRG   65 (120)
T 3brc_A            1 RRTVVPNWNAEKVDAINDVLRSFNLRE-AEHLQFNTNWADLTRXPAVTKALXALDISG-------AD-LVIARG   65 (120)
T ss_dssp             SCEEECCCCHHHHHHHHHHHHHTTCCC-CEECCSCCGGGGGSSSHHHHHHHHHHHHHC-------CS-EEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCHHHHHHEEEECCC-------CC-EEEECC
T ss_conf             549985597167799999999736864-125765687200113806653311452368-------84-799605


No 246
>>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:)
Probab=46.74  E-value=16  Score=15.35  Aligned_cols=98  Identities=10%  Similarity=-0.003  Sum_probs=58.3

Q ss_pred             CCCCEEEEEECC---CHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             265289998478---425899999986305975-8999721001111036799999999741003576777589995168
Q gi|254780791|r  143 FIPKIIAVITSP---TGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       143 ~~p~~i~vits~---~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      .-|++|+||-..   +..++.=+.+.....|++ .+.-....|.|..+-.++.+.       .     ..+|++++++--
T Consensus        20 ~~p~~iAVvGas~~~~~~g~~v~~~l~~~G~~V~~V~p~~~~i~g~~~~~sl~el-------p-----~~~Dlv~i~~p~   87 (144)
T 2d59_A           20 TRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDI-------P-----DKIEVVDLFVKP   87 (144)
T ss_dssp             HHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGC-------S-----SCCSEEEECSCH
T ss_pred             HCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCC-------C-----CCCCEEEEEECH
T ss_conf             6689499991159999825999999997899899989733300797456642014-------6-----765079998588


Q ss_pred             CCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             884442200769999999748904885205777525898864
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA  260 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA  260 (529)
                      -        .-..+++.+.+..+..+--+-|-.+..+.++..
T Consensus        88 ~--------~~~~i~~e~~~~g~k~v~~~~~g~~e~~~~~a~  121 (144)
T 2d59_A           88 K--------LTMEYVEQAIKKGAKVVWFQYNTYNREASKKAD  121 (144)
T ss_dssp             H--------HHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHH
T ss_pred             H--------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf             9--------999999999972999999942644999999999


No 247
>>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} (A:)
Probab=46.38  E-value=16  Score=15.31  Aligned_cols=94  Identities=15%  Similarity=0.111  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             10265289998478425899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  141 IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       141 lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      +..-+.+|-||-.  ....++++...-..|++.+....          +-..|++.+...       .||+||+-     
T Consensus         3 ~~~~~~~VLiVdd--~~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~l~~~-------~~dlii~D-----   58 (154)
T 3gt7_A            3 LSNRAGEILIVED--SPTQAEHLKHILEETGYQTEHVR----------NGREAVRFLSLT-------RPDLIISD-----   58 (154)
T ss_dssp             ----CCEEEEECS--CHHHHHHHHHHHHTTTCEEEEES----------SHHHHHHHHTTC-------CCSEEEEE-----
T ss_pred             CCCCCCCEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHCCC-------CCCEEEEE-----
T ss_conf             9999990999989--99999999999998799999807----------727787642265-------54346761-----


Q ss_pred             HHHHHHCCHHHHHHHHHHC----CCEEEEEECCCCCCHHHHHH
Q ss_conf             4442200769999999748----90488520577752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANS----SIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~----~iPVisgIGHE~D~Tl~D~V  259 (529)
                       -+|-..|-.++++.|...    .+|||-=.+++.........
T Consensus        59 -~~lp~~dg~el~~~ir~~~~~~~~pii~lt~~~~~~~~~~~~  100 (154)
T 3gt7_A           59 -VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSL  100 (154)
T ss_dssp             -SCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             -144788778999999855235677089960689999999999


No 248
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333)
Probab=45.83  E-value=16  Score=15.24  Aligned_cols=86  Identities=14%  Similarity=0.153  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEEC-CCHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             9999999976540122610016310-26528999847-8425899999986305---97589997210011110367999
Q gi|254780791|r  118 TALEKRKKKLLEEGLFSDQHKNPIP-FIPKIIAVITS-PTGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIAN  192 (529)
Q Consensus       118 ~~~e~lk~~L~~eGlfd~~~k~~lP-~~p~~i~vits-~~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~  192 (529)
                      ...++..+-+++-||.-....+.+. .-...||+|.+ .+.--+.++++-+.+.   .++.++++++  ........+  
T Consensus        36 ~Tr~rV~~aa~elGY~pn~~ar~l~~~ks~~Igviip~~~npff~~ii~gi~~~a~~~g~~lii~~~--~~~~~~~~~--  111 (205)
T 3jvd_A           36 QTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEA--NSVQAQDVV--  111 (205)
T ss_dssp             ----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--CSHHHHHHH--
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHH--
T ss_conf             9999999999996898688888750286617766511345633666666678787764301233333--221012332--


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             99999741003576777589995
Q gi|254780791|r  193 AILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       193 ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                       ++.+...       .+|.||+.
T Consensus       112 -le~l~~~-------~vdGIIi~  126 (205)
T 3jvd_A          112 -MESLISI-------QAAGIIHV  126 (205)
T ss_dssp             -HHHHHHH-------TCSEEEEC
T ss_pred             -HHCCCCC-------CCCCCCCC
T ss_conf             -2002221-------10112467


No 249
>>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} (A:1-90,A:197-282)
Probab=45.67  E-value=16  Score=15.22  Aligned_cols=134  Identities=10%  Similarity=0.102  Sum_probs=80.6

Q ss_pred             EEEEEEEEEEEC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             379999971016---80079999999999765401226100163102652899984784258999999863059758999
Q gi|254780791|r  100 KYQIIIESLIPS---GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVII  176 (529)
Q Consensus       100 ~~ql~v~~i~~~---g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~  176 (529)
                      .+.+++.+||=.   ..|.+....++..++|.+.|+              +++++|+.+-..+.++++-+.-..|+..++
T Consensus         4 ~~k~i~~DiDGTl~~~~~~i~~~~~~al~~L~~~Gi--------------~lvi~Tgr~~~~~~~~~~~l~i~~~~~~~I   69 (176)
T 1rkq_A            4 AIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGV--------------NVVLTTGRPYAGVHNYLKELHMEQPGDYCI   69 (176)
T ss_dssp             CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTC--------------EEEEECSSCGGGTHHHHHHTTCCSTTCEEE
T ss_pred             CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC--------------EEEEECCCCHHHHHHHHHHHCCCCCCCEEE
T ss_conf             876999967766538979519999999999998899--------------999998998899999999847768887599


Q ss_pred             -------EE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             -------72---10011110367999999997410035767775899951688844422007699999997489048852
Q gi|254780791|r  177 -------FP---VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       177 -------~p---~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                             |.   -.+.-.....+=..+|..+...-   ....-+++.++=|.         ||..+.   ....++|.-|
T Consensus        70 ~~nGa~i~~~~~~~~~~~~~~~~K~~~l~~l~~~~---~~~~~~~~~iGD~~---------nD~~m~---~~a~~~v~~~  134 (176)
T 1rkq_A           70 TYNGALVQKAADGSTVAQTALVNKGTGVKSLADVL---GIKPEEIMAIGDQE---------NDIAMI---EYAGVGVAVD  134 (176)
T ss_dssp             EGGGTEEEETTTCCEEEECCBCSHHHHHHHHHHHH---TCCGGGEEEEECSG---------GGHHHH---HHSSEEEECT
T ss_pred             ECCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHC---CCCHHHEEEEECCH---------HHHHHH---HHCCCEEEEC
T ss_conf             73861565044300343034772678999999870---98766779994876---------469999---8689179967


Q ss_pred             ECCCCCCHHHHHHHCC
Q ss_conf             0577752589886412
Q gi|254780791|r  247 IGHETDWTLADYAADL  262 (529)
Q Consensus       247 IGHE~D~Tl~D~VAD~  262 (529)
                      -|++.=...+|+|++.
T Consensus       135 ~a~~~~~~~a~~i~~~  150 (176)
T 1rkq_A          135 NAIPSVKEVANFVTKS  150 (176)
T ss_dssp             TSCHHHHHHCSEECCC
T ss_pred             CCCHHHHHHCCEECCC
T ss_conf             9889999858987088


No 250
>>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} (A:1-73)
Probab=45.47  E-value=16  Score=15.20  Aligned_cols=49  Identities=16%  Similarity=0.105  Sum_probs=35.7

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf             899999705435688862799987489479999973521058668145988999
Q gi|254780791|r   35 VCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLV   88 (529)
Q Consensus        35 ~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~   88 (529)
                      --..|-|..  . + ++|+|-...|....+.|.. |+++++-+..|--||.|++
T Consensus         9 ~~~~G~Vi~--~-~-~~~y~V~~~d~~~~~~c~~-RG~lr~~~~~~~VGD~V~~   57 (73)
T 1u0l_A            9 LRRRGIVVS--F-H-SNMVTVEDEETGERILCKL-RGKFRLQNLKIYVGDRVEY   57 (73)
T ss_dssp             CCEEEEEEE--E-E-TTEEEEEETTTCCEEEEEE-CGGGTTTTCCCCTTCEEEE
T ss_pred             CCCEEEEEE--E-E-CCEEEEEECCCCEEEEEEE-CCEECCCCCCCEECEEEEE
T ss_conf             741179999--9-7-9899999789991999994-4322058998000208999


No 251
>>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (I:)
Probab=45.34  E-value=13  Score=16.02  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=22.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             11110367999999997410035767775899951688844
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      |-...-..|..-+...+..+      .||+.+.++|||=..
T Consensus        38 ~~~~~r~~v~~Pl~~~~~~~------~~DI~~~V~GGG~sg   72 (128)
T 2vqe_I           38 QGLVRAVAALEPLRAVDALG------RFDAYITVRGGGKSG   72 (128)
T ss_dssp             SSCSSGGGGGHHHHHHTCST------TEEEEEEEESSCHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCC------CEEEEEEEECCCCHH
T ss_conf             17789999876654212257------426899995598510


No 252
>>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} (A:1-83,A:191-233)
Probab=45.20  E-value=17  Score=15.17  Aligned_cols=45  Identities=7%  Similarity=0.094  Sum_probs=32.0

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCCHHHHHHHHHHHH
Q ss_conf             9997654012261001631026----52899984784258999999863
Q gi|254780791|r  123 RKKKLLEEGLFSDQHKNPIPFI----PKIIAVITSPTGAVIRDILQRIS  167 (529)
Q Consensus       123 lk~~L~~eGlfd~~~k~~lP~~----p~~i~vits~~~a~~~D~~~~~~  167 (529)
                      .-.+|.++|++++.-...++..    -.-+||+....-+.-++|++=|.
T Consensus        62 ~~~~l~~~Gli~~~~~~~l~~n~~~i~~~~~~~~~~~~~~a~~f~~fl~  110 (126)
T 1amf_A           62 WMDYAVDKKAIDTATRQTLLGNHKKVEYPVAVVEGHNNATVKAFYDYLK  110 (126)
T ss_dssp             HHHHHHHTTCBCGGGCEEEEEESCCEEEEEEEBTTCCSHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHC
T ss_conf             6899887247786551232112617688899987999899999999978


No 253
>>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} (A:1-143)
Probab=45.08  E-value=17  Score=15.15  Aligned_cols=87  Identities=15%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             02652899984784258999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      +.-|++|-||-..  ...+.+++.+-..|+++++-.         +.+-.+|++.+...       .||+||+-      
T Consensus        10 ~~~~~~VLIVDD~--~~~r~~l~~~L~~~g~~vv~~---------a~~~~eal~~l~~~-------~~DliilD------   65 (143)
T 1s8n_A           10 AAVPRRVLIAEDE--ALIRMDLAEMLREEGYEIVGE---------AGDGQEAVELAELH-------KPDLVIMD------   65 (143)
T ss_dssp             -CCCCEEEEECSS--HHHHHHHHHHHHHTTCEEEEE---------ESSHHHHHHHHHHH-------CCSEEEEE------
T ss_pred             CCCCCEEEEECCC--HHHHHHHHHHHHHCCCEEEEE---------ECCHHHHHHHHHHC-------CCCEEEEE------
T ss_conf             8878889998298--999999999999869979999---------89999999999837-------99999996------


Q ss_pred             HHHHHCCHHHHHHHHH-HCCCEEEEEECCCCC
Q ss_conf             4422007699999997-489048852057775
Q gi|254780791|r  222 EDLWHFNDEMIVRAIA-NSSIPIISAIGHETD  252 (529)
Q Consensus       222 eDL~~FN~e~laraI~-~~~iPVisgIGHE~D  252 (529)
                      -+|--+|-.++++.|- .+++|||.=.++..+
T Consensus        66 ~~lP~~dG~el~~~lr~~~~~pii~lt~~~~~   97 (143)
T 1s8n_A           66 VKMPRRDGIDAASEIASKRIAPIVVLTAFSQR   97 (143)
T ss_dssp             SSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf             40458607999999985699998999567889


No 254
>>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} (A:1-126)
Probab=45.03  E-value=17  Score=15.15  Aligned_cols=49  Identities=8%  Similarity=0.158  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHCC-C-E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             258999999863059-7-5-89997210011110367999999997410035767775899951688844
Q gi|254780791|r  156 GAVIRDILQRISCRF-P-L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       156 ~a~~~D~~~~~~~r~-p-~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      -.++.+++..+.+++ | + .+++|.+..-|+..+.|                  .+|++||.-+.....
T Consensus        13 ~~~l~~~~~~l~~~~~~~i~~i~LfGS~aRG~~~~~S------------------DiDl~vi~~~~~~~~   64 (126)
T 1kny_A           13 MKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYS------------------DIEMMCVMSTEEAEF   64 (126)
T ss_dssp             HHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTC------------------CEEEEEEESSTTCEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC------------------CEEEEEEECCCCCCH
T ss_conf             9999999999998827355799998776589999999------------------867999975886430


No 255
>>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} (A:)
Probab=44.85  E-value=17  Score=15.13  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=47.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      ..+|-||-...  ....++...-..+++++.....          --.|+..+...       .||+||+        |+
T Consensus         4 ~~riLiVdD~~--~~~~~l~~~l~~~G~~v~~~~~----------~~~al~~l~~~-------~~dlill--------D~   56 (137)
T 3cfy_A            4 RPRVLLVEDST--SLAILYKQYVKDEPYDIFHVET----------GRDAIQFIERS-------KPQLIIL--------DL   56 (137)
T ss_dssp             CCEEEEECSCT--THHHHHHHHTTTSSSEEEEESS----------HHHHHHHHHHH-------CCSEEEE--------CS
T ss_pred             CCEEEEEECCH--HHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEE--------CC
T ss_conf             98699997999--9999999999977998999700----------89999887546-------7628985--------03


Q ss_pred             H--HCCHHHHHHHHHHCC--CEEEEEECCCC
Q ss_conf             2--007699999997489--04885205777
Q gi|254780791|r  225 W--HFNDEMIVRAIANSS--IPIISAIGHET  251 (529)
Q Consensus       225 ~--~FN~e~laraI~~~~--iPVisgIGHE~  251 (529)
                      .  ..|-.++++.|-+.+  +|||-=.|+..
T Consensus        57 ~lp~~~g~~l~~~ir~~~~~~piI~lt~~~~   87 (137)
T 3cfy_A           57 KLPDMSGEDVLDWINQNDIPTSVIIATAHGS   87 (137)
T ss_dssp             BCSSSBHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             4789972899999997589983899983699


No 256
>>3i1m_I 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ... (I:)
Probab=44.67  E-value=14  Score=15.83  Aligned_cols=17  Identities=29%  Similarity=0.542  Sum_probs=13.2

Q ss_pred             CCCCCEEEEECCCCCHH
Q ss_conf             67775899951688844
Q gi|254780791|r  206 CPRPDIIILARGGGSIE  222 (529)
Q Consensus       206 ~~~~D~iii~RGGGS~e  222 (529)
                      ...||+.|.++|||-..
T Consensus        58 ~~~~di~~~v~GGG~~g   74 (130)
T 3i1m_I           58 VEKLDLYITVKGGGISG   74 (130)
T ss_dssp             SSSCEEEEEEESSCHHH
T ss_pred             CCCEEEEEEEECCCCCH
T ss_conf             65146999984698214


No 257
>>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} (A:)
Probab=44.60  E-value=17  Score=15.10  Aligned_cols=90  Identities=16%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      +.+|-||  .+...+.+++..+-.++++.+....          +-.+|++.+...      ..||+||+        |+
T Consensus         5 ~~~ILiV--dD~~~~~~~l~~~L~~~g~~v~~a~----------~~~eal~~l~~~------~~~dlvi~--------D~   58 (132)
T 2rdm_A            5 AVTILLA--DDEAILLLDFESTLTDAGFLVTAVS----------SGAKAIEXLKSG------AAIDGVVT--------DI   58 (132)
T ss_dssp             SCEEEEE--CSSHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHTT------CCCCEEEE--------ES
T ss_pred             CCEEEEE--ECCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC------CCCCEEEE--------EE
T ss_conf             9999999--7999999999999998799999989----------889999999838------99779998--------40


Q ss_pred             -HH--CCHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHH
Q ss_conf             -20--0769999999748--904885205777525898864
Q gi|254780791|r  225 -WH--FNDEMIVRAIANS--SIPIISAIGHETDWTLADYAA  260 (529)
Q Consensus       225 -~~--FN~e~laraI~~~--~iPVisgIGHE~D~Tl~D~VA  260 (529)
                       ++  .|-.++++.|-..  .+|||.--|+........-+-
T Consensus        59 ~lp~~~dG~el~~~ir~~~~~~pii~~t~~~~~~~~~~~~~   99 (132)
T 2rdm_A           59 RFCQPPDGWQVARVAREIDPNXPIVYISGHAALEWASNGVP   99 (132)
T ss_dssp             CCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCT
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCC
T ss_conf             26898779999999998599995899977799899997172


No 258
>>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} (B:)
Probab=44.58  E-value=17  Score=15.09  Aligned_cols=39  Identities=13%  Similarity=0.037  Sum_probs=28.7

Q ss_pred             CCCCCEEEEECCCCCHHHHHH---CCHHHHHHHHHHCCCEEE
Q ss_conf             677758999516888444220---076999999974890488
Q gi|254780791|r  206 CPRPDIIILARGGGSIEDLWH---FNDEMIVRAIANSSIPII  244 (529)
Q Consensus       206 ~~~~D~iii~RGGGS~eDL~~---FN~e~laraI~~~~iPVi  244 (529)
                      ..++|.|||.=|+++..|...   --...+++...+..+||+
T Consensus        40 l~~~D~iil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~Pil   81 (201)
T 1gpw_B           40 NDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVV   81 (201)
T ss_dssp             SSCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEE
T ss_pred             HHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEE
T ss_conf             510585797899827788999886461889999986088465


No 259
>>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:)
Probab=44.52  E-value=17  Score=15.09  Aligned_cols=13  Identities=38%  Similarity=0.396  Sum_probs=6.5

Q ss_pred             CCEEEE-----ECCCCCH
Q ss_conf             758999-----5168884
Q gi|254780791|r  209 PDIIIL-----ARGGGSI  221 (529)
Q Consensus       209 ~D~iii-----~RGGGS~  221 (529)
                      +|.+|+     ...+|++
T Consensus       251 ~~~iI~TKlDe~~~~G~~  268 (306)
T 1vma_A          251 VTGIILTKLDGTAKGGIT  268 (306)
T ss_dssp             CCEEEEECGGGCSCTTHH
T ss_pred             CCEEEEEECCCCCCHHHH
T ss_conf             987999703588950499


No 260
>>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} (A:143-336)
Probab=44.37  E-value=17  Score=15.07  Aligned_cols=65  Identities=15%  Similarity=0.071  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH-HCCCEEEEE--ECCCCCC
Q ss_conf             0367999999997410035767775899951688844422007699999997-489048852--0577752
Q gi|254780791|r  186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA-NSSIPIISA--IGHETDW  253 (529)
Q Consensus       186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~-~~~iPVisg--IGHE~D~  253 (529)
                      .+..|-+.|..+....   ..+++-.||++|=-+-..+=+.+.-+++.+..+ ...+||+.+  +||-.+.
T Consensus       101 ~~~~idR~L~~L~~~G---~f~~~~gii~G~f~~~~~~~~~~~~~~ii~~~~~~~~iPv~~~~~~GH~~~~  168 (194)
T 3gjz_A          101 DAATIERSFSFLKING---VFDKVSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFDCCHTHPX  168 (194)
T ss_dssp             BHHHHHHHHHHHHHTT---HHHHCSEEEEECCTTCBCTTSCCCHHHHHHHHHTTCCCCEEEEESCSSSBSC
T ss_pred             CCCHHHHHHHHHHHCC---CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCC
T ss_conf             8658999999999769---8545858999357557677887389999999973189828989998689986


No 261
>>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (I:)
Probab=44.31  E-value=12  Score=16.41  Aligned_cols=16  Identities=31%  Similarity=0.526  Sum_probs=12.2

Q ss_pred             CCCCEEEEECCCCCHH
Q ss_conf             7775899951688844
Q gi|254780791|r  207 PRPDIIILARGGGSIE  222 (529)
Q Consensus       207 ~~~D~iii~RGGGS~e  222 (529)
                      .+|||.+.++|||-..
T Consensus       126 ~~~dv~~~v~GGG~sg  141 (197)
T 3bbn_I          126 TNYDVFVKAHGGGLSG  141 (197)
T ss_dssp             TTEEEEEEEESSCHHH
T ss_pred             CCCEEEEEEECCCCCC
T ss_conf             7620699995189654


No 262
>>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202)
Probab=44.26  E-value=17  Score=15.06  Aligned_cols=88  Identities=8%  Similarity=-0.015  Sum_probs=53.2

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             52899984784258999999863059758999721------001111036799999999741003576777589995168
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPV------KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~------~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      .+||||+|+=.-.+-+-+..-+... +++|.-+-.      .--|.-.+.+|.+++..+...     .+..|+|+|.-.+
T Consensus         1 a~rial~TPY~~~v~~~~~~~~~~~-G~eV~~~~~lg~~~~~~ia~i~~~~i~~~~~~~~~d-----~p~adAi~isCTn   74 (95)
T 2dgd_A            1 VRKLWIGTPYIKERTLEEVEWWRNK-GFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNE-----VLKADAVYIACTA   74 (95)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHTT-TCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHH-----HTTSSEEEECCTT
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCC
T ss_conf             9972885577706579999999967-905853002475654210239999999999985401-----3468789994158


Q ss_pred             CCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             884442200769999999748904885
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      =..-|+       +.+.=....+||||
T Consensus        75 l~t~~~-------i~~lE~~lg~PVis   94 (95)
T 2dgd_A           75 LSTYEA-------VQYLHEDLDXPVVS   94 (95)
T ss_dssp             SCCTTH-------HHHHHHHHTSCEEE
T ss_pred             CCHHHH-------HHHHHHHHCCCEEE
T ss_conf             647899-------99999998989997


No 263
>>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} (A:)
Probab=42.98  E-value=18  Score=14.90  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             76999999974890488520577752
Q gi|254780791|r  228 NDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       228 N~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                      +.++.+..|..-  +.||+|||+---
T Consensus        26 s~~Ea~eli~~e--~~iSaIGH~aTA   49 (109)
T 2j6b_A           26 TIQEAKELVTKE--QFTSAIGHQATA   49 (109)
T ss_dssp             CHHHHHHHHHHS--CEEECBCSHHHH
T ss_pred             CHHHHHHHHCCC--CEEEEECCHHHH
T ss_conf             899999875257--647730649899


No 264
>>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, archaea, crenarchaea, hypothetical protein; 2.39A {Sulfolobus turreted icosahedral virus} (A:)
Probab=42.39  E-value=10  Score=17.10  Aligned_cols=11  Identities=45%  Similarity=0.773  Sum_probs=5.8

Q ss_pred             CCEEEEEECCC
Q ss_conf             90488520577
Q gi|254780791|r  240 SIPIISAIGHE  250 (529)
Q Consensus       240 ~iPVisgIGHE  250 (529)
                      .-+++|+|||+
T Consensus        42 ~~~~vSaIGH~   52 (122)
T 2j85_A           42 DGTLINAIGHD   52 (122)
T ss_dssp             TTCEEECCCCH
T ss_pred             CCCEEEEECCH
T ss_conf             57459853649


No 265
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277)
Probab=42.26  E-value=18  Score=14.82  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=62.9

Q ss_pred             CCCCEEEEEECC---CHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             265289998478---425899999986305---97589997210011110367999999997410035767775899951
Q gi|254780791|r  143 FIPKIIAVITSP---TGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR  216 (529)
Q Consensus       143 ~~p~~i~vits~---~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R  216 (529)
                      .--+.||||.+.   +.--+.++++-+.+.   ..+.+.++++.-.    +....+.++.+...       ++|.|||.=
T Consensus        17 ~~s~~Igiiip~~~~~~~f~~~i~~gi~~~~~~~gy~v~i~~~~~d----~~~~~~~i~~l~~~-------~vDGiIi~~   85 (144)
T 3brq_A           17 KSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEKGRQLLLADGKHS----AEEERQAIQYLLDL-------RCDAIXIYP   85 (144)
T ss_dssp             --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTS----HHHHHHHHHHHHHT-------TCSEEEEEC
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEECC
T ss_conf             8999799995886546879999999999999985999999968999----89999999988634-------653024403


Q ss_pred             CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             6888444220076999999974890488520577752589886
Q gi|254780791|r  217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      -        ..+++.+...+-...+|++. ||+..+..=.|+|
T Consensus        86 ~--------~~~~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V  119 (144)
T 3brq_A           86 R--------FLSVDEIDDIIDAHSQPIXV-LNRRLRKNSSHSV  119 (144)
T ss_dssp             S--------SSCHHHHHHHHHTCSSCEEE-ESCCCSSSGGGEE
T ss_pred             C--------CCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCC
T ss_conf             3--------32117889998751798522-2222345332223


No 266
>>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:558-872,G:1038-1105)
Probab=42.15  E-value=18  Score=14.81  Aligned_cols=41  Identities=29%  Similarity=0.336  Sum_probs=24.3

Q ss_pred             CCEEEE--ECCCC-----CHHHHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             758999--51688-----844422007699999997489048852057
Q gi|254780791|r  209 PDIIIL--ARGGG-----SIEDLWHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       209 ~D~iii--~RGGG-----S~eDL~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                      +|.+|+  .-|||     |.+|++.--...+........+|||+|-|=
T Consensus       160 ~D~iiv~g~egGgh~G~~~~~~~~~~~~al~~~i~~~~~ipviaagG~  207 (383)
T 2uva_G          160 PTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGF  207 (383)
T ss_dssp             TTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSC
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999779998378877766610014799999999857897799976876


No 267
>>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} (A:1-88,A:185-228)
Probab=42.05  E-value=18  Score=14.79  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=41.6

Q ss_pred             CCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             026528999847842589999998630597-58999721001111036799999999741003576777589995
Q gi|254780791|r  142 PFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      +.-.-+||+..|.....+-+++...+++|| +++.+....      ..++..+|..          ..+|+.|+.
T Consensus        12 ~~G~LrIG~~~s~a~~~Lp~~L~~F~~~~P~I~I~L~~~~------s~~l~~~L~~----------g~lDlaI~~   70 (132)
T 2fyi_A           12 TSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGT------PQEIATLLQN----------GEADIGIAS   70 (132)
T ss_dssp             CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECC------HHHHHHHHHH----------TSCSEEEES
T ss_pred             CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC------HHHHHHHHHH----------CCCCEEEEE
T ss_conf             9707999976899999999999999998899789998353------3889988753----------033235542


No 268
>>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* (A:1-218,A:456-495)
Probab=42.03  E-value=18  Score=14.79  Aligned_cols=107  Identities=24%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             EEEECCCHHHHHHHHHHHHH--CCC-----E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-
Q ss_conf             99847842589999998630--597-----5-89997210011110367999999997410035767775899951688-
Q gi|254780791|r  149 AVITSPTGAVIRDILQRISC--RFP-----L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-  219 (529)
Q Consensus       149 ~vits~~~a~~~D~~~~~~~--r~p-----~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-  219 (529)
                      .++++++..-+..+++.-..  +|.     . ..+++|..+      ++|.++++.+.+         ..+-|.+|||| 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~------eev~~~Vk~a~~---------~~~~v~~rGgGh   79 (258)
T 3fw9_A           15 TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK------EELSNTIRCIRK---------GSWTIRLRSGGH   79 (258)
T ss_dssp             EECCCCTTCHHHHHHHHTCCCGGGCSTTSCCCSEEECCCSH------HHHHHHHHHHHT---------SSCEEEEESSCC
T ss_pred             CEECCCCCCCHHHHHHHHCCCHHHCCCCCCCCCEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCC
T ss_conf             53228987336788776502700037888987779970999------999999999998---------797599986996


Q ss_pred             -----C--------HHHHHHCCHH------------------HHHHHHHH--CCCEEEE-------------EECCCCC-
Q ss_conf             -----8--------4442200769------------------99999974--8904885-------------2057775-
Q gi|254780791|r  220 -----S--------IEDLWHFNDE------------------MIVRAIAN--SSIPIIS-------------AIGHETD-  252 (529)
Q Consensus       220 -----S--------~eDL~~FN~e------------------~laraI~~--~~iPVis-------------gIGHE~D-  252 (529)
                           +        +-||..||.-                  .|.+++..  ..+|+..             +-||-.. 
T Consensus        80 s~~g~~~~~~~~~ivIdl~~l~~i~~d~~~~~v~V~aGv~~~~l~~~L~~~g~~l~~~~g~~~~~tigG~ia~~~~G~~s  159 (258)
T 3fw9_A           80 SYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMS  159 (258)
T ss_dssp             CTTCTTSCCSSCEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCSSEECCCCSCTTCBHHHHHHTCCCCTTH
T ss_pred             CCCCCCCCCCCCEEEEECCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf             78887165899989999877998898479998999658799999999998088046687568853444121454458874


Q ss_pred             ---CHHHHHHHCCCCCCCHHH
Q ss_conf             ---258988641237772145
Q gi|254780791|r  253 ---WTLADYAADLRAPTPTGA  270 (529)
Q Consensus       253 ---~Tl~D~VAD~Ra~TPTaA  270 (529)
                         =..+|.|-.++.-||...
T Consensus       160 ~~~G~~~d~v~~~~vV~~dG~  180 (258)
T 3fw9_A          160 RKYGLAADNVVDAILIDANGA  180 (258)
T ss_dssp             HHHCCGGGGEEEEEEECTTCC
T ss_pred             CEECCHHHEEEEEEEECCCCE
T ss_conf             220424223899999826980


No 269
>>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} (A:)
Probab=41.99  E-value=18  Score=14.79  Aligned_cols=88  Identities=18%  Similarity=0.218  Sum_probs=53.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECC--CCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf             986229999999999974001--71899999705--43568886279998748947999997352105866814598899
Q gi|254780791|r   12 HPEYSVSELSYHLKHIVESNL--SHVCVRGEISG--YRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFL   87 (529)
Q Consensus        12 ~~~~svs~l~~~i~~~l~~~~--~~~~v~gEis~--~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~   87 (529)
                      ..-||+||+...-...-+..+  ..|.|.|-|-.  +.....+.++=|.|.|..+.|..+.- +   -++-..++|..|+
T Consensus         6 ~yf~tpse~~~~~~~~~~~~~~g~~vrv~G~V~~GSi~~~~~~~~~~F~ltD~~~~i~V~Y~-G---~~Pd~F~eg~~VV   81 (136)
T 1sr3_A            6 DLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYE-G---ILPDLFREGQGVV   81 (136)
T ss_dssp             SCCBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEE-S---CCCTTCCTTSEEE
T ss_pred             EEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEEC-C---CCCHHHCCCCCEE
T ss_conf             58999799616544322456679679986899872898516631589998056515888864-8---8964442798099


Q ss_pred             EEEEEEEECCCCEEEEEEEEE
Q ss_conf             999966752884379999971
Q gi|254780791|r   88 VIGKITTFPGSSKYQIIIESL  108 (529)
Q Consensus        88 ~~g~~~~y~~~g~~ql~v~~i  108 (529)
                      +.|+.   ...|.  |.++.|
T Consensus        82 v~G~~---~~~g~--F~A~~i   97 (136)
T 1sr3_A           82 VQGEL---EKGNH--ILAKEV   97 (136)
T ss_dssp             EEEEE---CSSSE--EEESSC
T ss_pred             EEEEE---CCCCE--EEEEEE
T ss_conf             99897---89996--999999


No 270
>>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241)
Probab=41.96  E-value=18  Score=14.91  Aligned_cols=43  Identities=16%  Similarity=0.335  Sum_probs=36.6

Q ss_pred             CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             7758999516888444220076999999974890488520577752589886
Q gi|254780791|r  208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      .||+|+|.         -+-.|...++.-....||||+=+--..|.+.+||+
T Consensus       112 ~P~~vii~---------d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~idyp  154 (196)
T 3i1m_B          112 LPDALFVI---------DADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV  154 (196)
T ss_dssp             CCSSEEEE---------ETGGGHHHHHHHHHHTCCEEEECCTTSCGGGCSBC
T ss_pred             CCCEEEEE---------CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEE
T ss_conf             87547874---------36510899999997599767523677883358878


No 271
>>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A (A:1-200,A:283-322)
Probab=41.92  E-value=18  Score=14.78  Aligned_cols=32  Identities=19%  Similarity=0.119  Sum_probs=28.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             28999847842589999998630597589997
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIF  177 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~  177 (529)
                      .++-||++|+|+|-..+.+.|.+++|..++..
T Consensus         3 ~kiiii~GPSGsGKstLa~~La~~~~~~ii~~   34 (240)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVXLAKRLNGEVISG   34 (240)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             76799989872169999999999879969962


No 272
>>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} (A:)
Probab=41.85  E-value=13  Score=15.97  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=27.1

Q ss_pred             HHHCCHHHHHCCCE-EEEECCCCCEECCHHHCCCCCEEEEE
Q ss_conf             87169677731461-99984898895777892999869999
Q gi|254780791|r  449 LQSFAYKNTLKRGY-TSIQDTNNNFITQKRNLATKTRILIN  488 (529)
Q Consensus       449 L~slsP~~~L~RGY-aiv~~~~GkiI~s~~~l~~gd~i~i~  488 (529)
                      |+.++-.=-|..|. --+++.+|+.|++.+++..|+.+-+-
T Consensus        46 L~~~t~~l~l~~gaVr~lyt~~G~~v~~l~dl~~g~~yvas   86 (108)
T 2dnf_A           46 LQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAV   86 (108)
T ss_dssp             HHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSCBEEEE
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCCEECCHHHHCCCCEEEEE
T ss_conf             99998641899885789986899890789996779989997


No 273
>>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} (A:)
Probab=41.60  E-value=15  Score=15.44  Aligned_cols=116  Identities=19%  Similarity=0.249  Sum_probs=63.1

Q ss_pred             CCCEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHH---
Q ss_conf             5988999999667528843799999710168-007999999999976540122610016310265289998478425---
Q gi|254780791|r   82 EGIEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGA---  157 (529)
Q Consensus        82 ~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a---  157 (529)
                      ++...++-|.+++=+....         -.| ..+.....++. +++.++|-           -.--||..++..++   
T Consensus        11 ~~~~~~I~~iiN~t~~sf~---------~~~~~~d~e~~~~~a-~~~~~~GA-----------diIDig~~st~p~~~~v   69 (282)
T 1aj0_A           11 DLSHPHVMGILNVTPDSFS---------DGGTHNSLIDAVKHA-NLMINAGA-----------TIIDVGGESTRPGAAEV   69 (282)
T ss_dssp             ETTSCEEEEEEECCTTTSC---------CCCCCTHHHHHHHHH-HHHHHHTC-----------SEEEEESSCCSTTCCCC
T ss_pred             CCCCCCEEEEEECCCCCCC---------CCCCCCCHHHHHHHH-HHHHHCCC-----------CEEEECCCCCCCCCCCC
T ss_conf             5999708999808999998---------998677999999999-99998799-----------79987781345666677


Q ss_pred             -------HHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCC
Q ss_conf             -------8999999863059--7589997210011110367999999997410035767775899951688844422007
Q gi|254780791|r  158 -------VIRDILQRISCRF--PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFN  228 (529)
Q Consensus       158 -------~~~D~~~~~~~r~--p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN  228 (529)
                             -+..++..++..+  |+.|.-|..-|        +..|++.-           .|.|         -|.++|+
T Consensus        70 ~~~~E~~rl~~~i~~i~~~~~~piSIDT~~~~v--------~~~al~~G-----------~diI---------Nsi~~~~  121 (282)
T 1aj0_A           70 SVEEELQRVIPVVEAIAQRFEVWISVDTSKPEV--------IRESAKVG-----------AHII---------NDIRSLS  121 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH--------HHHHHHTT-----------CCEE---------EETTTTC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH--------HHHHHHCC-----------CEEE---------ECHHHHH
T ss_conf             688999989999999863355237887247377--------89997359-----------6598---------4234311


Q ss_pred             HHHHHHHHHHCCCEEEEE
Q ss_conf             699999997489048852
Q gi|254780791|r  229 DEMIVRAIANSSIPIISA  246 (529)
Q Consensus       229 ~e~laraI~~~~iPVisg  246 (529)
                      ++++...++....|||.-
T Consensus       122 ~~~~~~l~~~~~~~vVlm  139 (282)
T 1aj0_A          122 EPGALEAAAETGLPVCLM  139 (282)
T ss_dssp             STTHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHCCCCEEEEE
T ss_conf             146677764369408974


No 274
>>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} (A:26-148,A:211-349)
Probab=41.49  E-value=19  Score=14.73  Aligned_cols=25  Identities=4%  Similarity=0.039  Sum_probs=11.9

Q ss_pred             CCEEEEECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             758999516888444220076999999974
Q gi|254780791|r  209 PDIIILARGGGSIEDLWHFNDEMIVRAIAN  238 (529)
Q Consensus       209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~  238 (529)
                      .|.+|-.++|=     +......+++++-.
T Consensus       168 ~D~vim~~~~~-----~~v~gP~~v~~~~g  192 (262)
T 3ff6_A          168 GQRVIQVENSH-----IILTGASALNKVLG  192 (262)
T ss_dssp             HCEEEEETTCB-----EESSCHHHHHHHHS
T ss_pred             CCEEEEECCCE-----EEEECCCCEEEECC
T ss_conf             43378866836-----89637852044348


No 275
>>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A (A:83-462)
Probab=41.35  E-value=19  Score=14.71  Aligned_cols=46  Identities=17%  Similarity=0.417  Sum_probs=23.7

Q ss_pred             CCEEEEECCCCCHHHHHHCCHHHHHHHHH--------HCCCEEE-EEECCCCCC--HHHHHHHC
Q ss_conf             75899951688844422007699999997--------4890488-520577752--58988641
Q gi|254780791|r  209 PDIIILARGGGSIEDLWHFNDEMIVRAIA--------NSSIPII-SAIGHETDW--TLADYAAD  261 (529)
Q Consensus       209 ~D~iii~RGGGS~eDL~~FN~e~laraI~--------~~~iPVi-sgIGHE~D~--Tl~D~VAD  261 (529)
                      -|++|+.-||=..-|       ++..++.        ..++||| .|-..=.++  .|.+|+.+
T Consensus       166 sdaiIvlPGG~GTLd-------Elfe~ltl~q~g~~~k~~~PiVL~G~~~~~~y~~~l~~~i~~  222 (380)
T 3gh1_A          166 AHGIIIFPGGPGTAE-------ELLYILGIXXHPENADQPXPIVLTGPKQSEAYFRSLDKFITD  222 (380)
T ss_dssp             CSEEEECSCSHHHHH-------HHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHH-------HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             788998589765099-------999999998555578898689996786548999999999998


No 276
>>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} (A:)
Probab=41.11  E-value=19  Score=14.68  Aligned_cols=93  Identities=13%  Similarity=0.038  Sum_probs=50.6

Q ss_pred             CCCEEEEEECCCHH-----HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH---HH---HHHHHHHHHCCCCCCCCCCEE
Q ss_conf             65289998478425-----89999998630597589997210011110367---99---999999741003576777589
Q gi|254780791|r  144 IPKIIAVITSPTGA-----VIRDILQRISCRFPLRVIIFPVKVQGDECPKE---IA---NAILQLNTLKEGRTCPRPDII  212 (529)
Q Consensus       144 ~p~~i~vits~~~a-----~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~---i~---~ai~~~~~~~~~~~~~~~D~i  212 (529)
                      +||||+|+.-++-.     +..|+++....  + ...+.++..+++.-..+   .+   ..+..++.       ..+|++
T Consensus         1 M~kkI~ill~~gf~~~e~~~~~~vl~~ag~--~-~~~~~~~~~~~~~v~s~~G~~i~~d~~~~~~~~-------~~~d~l   70 (205)
T 2ab0_A            1 MSASALVCLAPGSEETEAVTTIDLLVRGGI--K-VTTASVASDGNLAITCSRGVKLLADAPLVEVAD-------GEYDVI   70 (205)
T ss_dssp             -CCEEEEEECTTCCHHHHHHHHHHHHHTTC--E-EEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-------SCCSEE
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHCCC--E-EEEEEECCCCCCEEEECCCCEEECCCCHHHCCC-------CCCEEE
T ss_conf             983499995499109999999999998899--8-999997189984688079988957867788283-------454199


Q ss_pred             EEECCCCCHHHHHHCCHH-HHHHHHHHCCCEEEEE
Q ss_conf             995168884442200769-9999997489048852
Q gi|254780791|r  213 ILARGGGSIEDLWHFNDE-MIVRAIANSSIPIISA  246 (529)
Q Consensus       213 ii~RGGGS~eDL~~FN~e-~laraI~~~~iPVisg  246 (529)
                      ++.-|-|..++|+..-+. .++|+.++..-||+.-
T Consensus        71 ~~~gg~~~~~~~~~~~~~~~~i~~~~~~~k~v~~i  105 (205)
T 2ab0_A           71 VLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAI  105 (205)
T ss_dssp             EECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEE
T ss_pred             EECCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             98455551554203689999999875123135531


No 277
>>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} (A:)
Probab=41.02  E-value=19  Score=14.67  Aligned_cols=77  Identities=13%  Similarity=0.227  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             99999986305975899972100111103679999999974100357677758999516888444220076999999974
Q gi|254780791|r  159 IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN  238 (529)
Q Consensus       159 ~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~  238 (529)
                      +...++.+..+.+.-+.--...+||..-...++.++..+.          ||++.+        -=+-||...+.+.+..
T Consensus        18 ~~~~i~~~~~~~d~l~v~~GD~~~g~~~~~~~~~~l~~~g----------~d~~~~--------GNHe~d~g~l~~~l~~   79 (255)
T 1t70_A           18 LQNHLPTIRPQFDFVIVNMENSAGGFGMHRDAARGALEAG----------AGCLTL--------GNHAWHHKDIYPMLSE   79 (255)
T ss_dssp             HHHHHHHHGGGCSEEEEECTBTTTTSSCCHHHHHHHHHHT----------CSEEEC--------CTTTTSSTTHHHHHHT
T ss_pred             HHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCC----------CCEEEC--------CCHHHHCHHHHHHHHH
T ss_conf             9987088786098999998667888589999999999757----------867973--------6055424236899863


Q ss_pred             CCCEEEEEECCCCCC
Q ss_conf             890488520577752
Q gi|254780791|r  239 SSIPIISAIGHETDW  253 (529)
Q Consensus       239 ~~iPVisgIGHE~D~  253 (529)
                      +.-|++++.|=..+.
T Consensus        80 ~~~~~l~~n~~~~~~   94 (255)
T 1t70_A           80 DTYPIVRPLNYADPG   94 (255)
T ss_dssp             TCSCEECCSCCCCTT
T ss_pred             CCCCCCCHHCCCCCC
T ss_conf             031236321077778


No 278
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:1-106,A:243-276)
Probab=40.60  E-value=19  Score=14.62  Aligned_cols=89  Identities=11%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             EEEEEECCCHHH-HHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             899984784258-9999998630---597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  147 IIAVITSPTGAV-IRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       147 ~i~vits~~~a~-~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      |||||.+..... +..+++-+..   .+++++.++  .+.+++....-..+|+.+-...      ..|+||++-....  
T Consensus         2 rIgvIvp~~~npf~~~i~~Gie~~a~~~Gy~vii~--~~~~~~d~~~q~~~i~~li~~~------~~dgIIl~~~~~~--   71 (140)
T 3ksm_A            2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHR--STKDDGDIAGQIQILSYHLSQA------PPDALILAPNSAE--   71 (140)
T ss_dssp             EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEEC--CCSSTTCHHHHHHHHHHHHHHS------CCSEEEECCSSTT--
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE--ECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCHH--
T ss_conf             89999599999999999999999999839989999--5899879999999999999708------9989999379857--


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             42200769999999748904885205777
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIISAIGHET  251 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVisgIGHE~  251 (529)
                           ......+.+.+..||||. |+...
T Consensus        72 -----~~~~~l~~l~~~gIPvV~-id~~i   94 (140)
T 3ksm_A           72 -----DLTPSVAQYRARNIPVLV-VDSDL   94 (140)
T ss_dssp             -----TTHHHHHHHHHTTCCEEE-ESSCC
T ss_pred             -----HHHHHHHHHHHCCCCEEE-CCCCC
T ss_conf             -----779999999977994997-36644


No 279
>>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (i:)
Probab=40.34  E-value=16  Score=15.42  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=18.3

Q ss_pred             CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             677758999516888444220076999999974
Q gi|254780791|r  206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN  238 (529)
Q Consensus       206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~  238 (529)
                      ...||+.|-++|||-.. -+.==--.+|||+..
T Consensus        63 ~~~~Dv~v~v~GGG~~g-Qa~Air~aiaraL~~   94 (146)
T 2zkq_i           63 FAGVDIRVRVKGGGHVA-QIYAIRQSISKALVA   94 (146)
T ss_dssp             TSSEEEEEEEESSCHHH-HHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCEE-HHHHHHHHHHHHHHH
T ss_conf             35632589973388130-032649999999998


No 280
>>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} (A:)
Probab=40.29  E-value=19  Score=14.59  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=23.1

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHC-CCEEEEE
Q ss_conf             289998478425899999986305-9758999
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCR-FPLRVII  176 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r-~p~~~~~  176 (529)
                      -||+++.|..++.+.+++..+... .++++..
T Consensus         1 ~rI~~~gs~~~s~l~~ll~~~~~~~~~~~i~~   32 (209)
T 1meo_A            1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDI   32 (209)
T ss_dssp             CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             98999982784659999999766999978999


No 281
>>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:)
Probab=40.22  E-value=19  Score=14.58  Aligned_cols=96  Identities=13%  Similarity=0.070  Sum_probs=53.8

Q ss_pred             CCCCEEEEEECC---CHHHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             265289998478---4258999999863059758999721-----00111103679999999974100357677758999
Q gi|254780791|r  143 FIPKIIAVITSP---TGAVIRDILQRISCRFPLRVIIFPV-----KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       143 ~~p~~i~vits~---~~a~~~D~~~~~~~r~p~~~~~~p~-----~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii  214 (529)
                      .-|++|+||-..   +..++. +++.+. .+++++.+++.     .+.|..+-.++.++            ...+|+++|
T Consensus        11 ~~p~siaViGaS~~~~~~g~~-v~~~L~-~~g~~~~~~~p~~~~~~i~g~~~~~sl~~~------------~~~~D~vvi   76 (140)
T 1iuk_A           11 SQAKTIAVLGAHKDPSRPAHY-VPRYLR-EQGYRVLPVNPRFQGEELFGEEAVASLLDL------------KEPVDILDV   76 (140)
T ss_dssp             HHCCEEEEETCCSSTTSHHHH-HHHHHH-HTTCEEEEECGGGTTSEETTEECBSSGGGC------------CSCCSEEEE
T ss_pred             HCCCEEEEEEECCCCCCCHHH-HHHHHH-HCCCEEEEECCCCCCCEECCEEEECCHHHC------------CCCCCEEEE
T ss_conf             679959999226999971999-999997-289838997876764255682752556775------------899728999


Q ss_pred             ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             5168884442200769999999748904885205777525898864
Q gi|254780791|r  215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA  260 (529)
Q Consensus       215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA  260 (529)
                      +.--=...|.        .+...+..++.+--+-|--+..+.+...
T Consensus        77 ~vp~~~~~~~--------l~e~~~~g~~~~~~~~g~~~e~~~~~~~  114 (140)
T 1iuk_A           77 FRPPSALMDH--------LPEVLALRPGLVWLQSGIRHPEFEKALK  114 (140)
T ss_dssp             CSCHHHHTTT--------HHHHHHHCCSCEEECTTCCCHHHHHHHH
T ss_pred             EECHHHHHHH--------HHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf             8088998999--------9999964989899898977999999999


No 282
>>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} (A:1-80)
Probab=40.02  E-value=19  Score=14.55  Aligned_cols=42  Identities=14%  Similarity=0.029  Sum_probs=34.9

Q ss_pred             CEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEECC
Q ss_conf             619998489889577789299986999991109999995057
Q gi|254780791|r  461 GYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKA  502 (529)
Q Consensus       461 GYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~k~  502 (529)
                      |=.++.+.+|.++++..-+...+.+.+.|..-+..++|...-
T Consensus        21 GSGfii~~~G~IlTn~HVV~~~~~i~V~~~g~~~~A~vv~~~   62 (80)
T 2w5e_A           21 GKGTGFFSGNDIVTAAHVVGNNTFVNVCYEGLMYEAKVRYMP   62 (80)
T ss_dssp             EEEEEEEETTEEEEEHHHHTTCSEEEEEETTEEEEEEEEECC
T ss_pred             CCEEEEEECCEEEECCHHHCCCCEEEEEEEEEEECCCCCCCC
T ss_conf             629999989999988157088837888620011022110376


No 283
>>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:193-356)
Probab=39.93  E-value=19  Score=14.54  Aligned_cols=42  Identities=7%  Similarity=0.003  Sum_probs=23.7

Q ss_pred             HHHHHHHHHCCCEEE-EEECCCCCCHHHHHHHCCCCCCCHHHH
Q ss_conf             999999974890488-520577752589886412377721456
Q gi|254780791|r  230 EMIVRAIANSSIPII-SAIGHETDWTLADYAADLRAPTPTGAA  271 (529)
Q Consensus       230 e~laraI~~~~iPVi-sgIGHE~D~Tl~D~VAD~Ra~TPTaAA  271 (529)
                      ...+-.-..|.+||| |..|..++...-+..--+-..+|.+-|
T Consensus        99 ~~~~lEa~~~g~pvi~~~~~~~~~~i~~~~~~~~~~~d~~~~~  141 (164)
T 3beo_A           99 GGVQEEAPSLGVPVLVLRDTTERPEGIEAGTLKLAGTDEETIF  141 (164)
T ss_dssp             HHHHHHHHHHTCCEEECSSCCSCHHHHHTTSEEECCSCHHHHH
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHHHH
T ss_conf             0366777761998898078775873674481698689999999


No 284
>>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* (A:)
Probab=39.41  E-value=20  Score=14.48  Aligned_cols=91  Identities=20%  Similarity=0.118  Sum_probs=57.2

Q ss_pred             CCCCEEEEEECCCHHHHHHHH-----HHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE--
Q ss_conf             265289998478425899999-----98630597--589997210011110367999999997410035767775899--
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDIL-----QRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII--  213 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~-----~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii--  213 (529)
                      .-+.|||||.|.=-.-+-|-+     ..+...-.  +.++-.|-..       ||--+++++.+        +||.||  
T Consensus        15 ~~~~ri~IV~s~fn~~i~~~Ll~ga~~~l~~~g~~~i~v~~VPGa~-------EiP~a~~~l~~--------~~DaiIaL   79 (160)
T 2c92_A           15 ASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAI-------EIPVVAQELAR--------NHDAVVAL   79 (160)
T ss_dssp             CTTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGG-------GHHHHHHHHHT--------SCSEEEEE
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH-------HHHHHHHHHHH--------HCCCEEEE
T ss_conf             8899899997307699999999999999997799722344147488-------99999999874--------14561578


Q ss_pred             --EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEEC
Q ss_conf             --95168884442200-769999999748904885205
Q gi|254780791|r  214 --LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIG  248 (529)
Q Consensus       214 --i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIG  248 (529)
                        |+||+=.--|..|= =...|.+.=....+||+.||=
T Consensus        80 G~VIrG~T~H~~~i~~~vs~gl~~v~l~~~vPV~~Gvl  117 (160)
T 2c92_A           80 GVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVL  117 (160)
T ss_dssp             EEEECCSSTHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             89982785288899999999999987544997599970


No 285
>>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structural genomics consortium (NESG); NMR {Escherichia coli K12} (A:)
Probab=39.33  E-value=20  Score=14.47  Aligned_cols=80  Identities=11%  Similarity=0.094  Sum_probs=37.2

Q ss_pred             CCCEEEEEEECCCCEEE--EEEECCCCCCC-------CCCCCCCCEEEEEEEEEEEC-CCCEEEEEEEE---------EE
Q ss_conf             88627999874894799--99973521058-------66814598899999966752-88437999997---------10
Q gi|254780791|r   49 SSGHAYFSLKDNHSRID--AIIWKGTLNKI-------EFLPEEGIEFLVIGKITTFP-GSSKYQIIIES---------LI  109 (529)
Q Consensus        49 ~sGH~Yf~lkd~~a~i~--~~~~~~~~~~~-------~~~~~~G~~v~~~g~~~~y~-~~g~~ql~v~~---------i~  109 (529)
                      ..|.|||.|++.+..+=  -.+|.+...-.       ..-|..+.-       .+|. ..|+|.|...+         =.
T Consensus        27 ~~g~~rfrL~a~ng~iia~S~~Y~s~~~a~~~I~~v~~~a~~A~if-------El~~d~~g~~~f~L~~~ng~vIa~Se~   99 (130)
T 2k8e_A           27 SDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERY-------EKKTASNGKFYFNLKAANHQIIGSSQM   99 (130)
T ss_dssp             TTCCEEEEEECTTSCEEEECCCBSSHHHHHHHHHHHHHSSSCTTTE-------EEEEETTTEEEEEEECTTSCEEEECCC
T ss_pred             CCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-------EEEECCCCCEEEEEEECCCCEEEECCC
T ss_conf             8997999999299999986799688899999999998755566407-------888547997799999799858887788


Q ss_pred             ECCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             16800799999999997654012261
Q gi|254780791|r  110 PSGSGTLLTALEKRKKKLLEEGLFSD  135 (529)
Q Consensus       110 ~~g~G~l~~~~e~lk~~L~~eGlfd~  135 (529)
                      +....++...++.+|+--.....+|.
T Consensus       100 y~s~~~a~~~i~~vk~~a~~a~v~d~  125 (130)
T 2k8e_A          100 YATAQSRETGIASVKANGTSQTVKDN  125 (130)
T ss_dssp             BSSHHHHHHHHHHHHHHTTCCCEEEC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf             69999999999999974899925851


No 286
>>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} (A:44-272)
Probab=39.03  E-value=20  Score=14.44  Aligned_cols=98  Identities=12%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             EEEEEEECCCC----CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHCCHHHHHHHHHHCCCE
Q ss_conf             58999721001----111036799999999741003576777589995168884-----442200769999999748904
Q gi|254780791|r  172 LRVIIFPVKVQ----GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHFNDEMIVRAIANSSIP  242 (529)
Q Consensus       172 ~~~~~~p~~vQ----G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~FN~e~laraI~~~~iP  242 (529)
                      +-++.....|.    |..+..-++++++.+++.+       .-+|.++-+||..     +-+..+=.-.-+-+-+...+|
T Consensus        54 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~-------~Piv~l~ds~G~r~~e~~~~~~~~~~~~~~~~~~~~~vP  126 (229)
T 1on3_A           54 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-------TPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVP  126 (229)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-------CCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             EEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999974866150779787524279999998559-------988999826997655440133320389999998507897


Q ss_pred             EEEEECCCCCC--HHHHHHHCCCCCCCHHHHHHHCC
Q ss_conf             88520577752--58988641237772145676332
Q gi|254780791|r  243 IISAIGHETDW--TLADYAADLRAPTPTGAAEMAVP  276 (529)
Q Consensus       243 VisgIGHE~D~--Tl~D~VAD~Ra~TPTaAAElavp  276 (529)
                      +|+.|-+..=-  .++=-.+|....+|.+.-=++-|
T Consensus       127 ~i~vv~g~~~ggga~~~~~~D~~i~~~~a~~~~~gP  162 (229)
T 1on3_A          127 QIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP  162 (229)
T ss_dssp             EEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH
T ss_pred             EEEEEECCCCCCCEEECCCCCEEEEECCEEEEEECC
T ss_conf             799970788765043314482899815604994082


No 287
>>3bic_A Methylmalonyl-COA mutase, mitochondrial precursor; organic aciduria, methylmalonyl COA mutase deficiency, metabolic disease, structural genomics; 2.60A {Homo sapiens} (A:584-762)
Probab=38.91  E-value=20  Score=14.42  Aligned_cols=111  Identities=11%  Similarity=0.085  Sum_probs=64.6

Q ss_pred             CEEEEEEC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHH
Q ss_conf             28999847--842589999998630597589997210011110367999999997410035767775899951-688844
Q gi|254780791|r  146 KIIAVITS--PTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIE  222 (529)
Q Consensus       146 ~~i~vits--~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~e  222 (529)
                      .+|-+++.  ..-..-..++..+-++.+++++...+.+=|    .+++.++..-          .+|+|++.- =++..+
T Consensus        22 ~~vll~~~~~d~H~~g~~~~~~~l~~~G~~v~~lg~~~~~----~~~~~~~~~~----------~~d~V~ls~~~~~~~~   87 (179)
T 3bic_A           22 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTP----REVAQQAVDA----------DVHAVGVSTLAAGHKT   87 (179)
T ss_dssp             CEEEEEEBSSCCCCHHHHHHHHHHHHTTCEEEECCTTBCH----HHHHHHHHHH----------TCSEEEEEECSSHHHH
T ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCH----HHHHHHHHHC----------CCCEEEEECCCCCHHH
T ss_conf             7699965787745102999999998578007508877899----9999999975----------9899999368734798


Q ss_pred             HHHHCCHHHHHHHHHH---CCCEEE-EEECCCCCCHHH-HHHHCCCCCCCHHHHHHHC
Q ss_conf             4220076999999974---890488-520577752589-8864123777214567633
Q gi|254780791|r  223 DLWHFNDEMIVRAIAN---SSIPII-SAIGHETDWTLA-DYAADLRAPTPTGAAEMAV  275 (529)
Q Consensus       223 DL~~FN~e~laraI~~---~~iPVi-sgIGHE~D~Tl~-D~VAD~Ra~TPTaAAElav  275 (529)
                           +-..+++.+-+   -.+||| +|-+-+.|...+ ..=+|-=+..|+.+.|.+.
T Consensus        88 -----~~~~~~~~lr~~g~~~~~vivgG~~~~~~~~~~~~~Gad~~~~~~~~~~e~l~  140 (179)
T 3bic_A           88 -----LVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAV  140 (179)
T ss_dssp             -----HHHHHHHHHHHHTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHH
T ss_pred             -----HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf             -----99999999996799886799807688788999997797678199980999999


No 288
>>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} (A:1-58,A:158-335)
Probab=38.80  E-value=14  Score=15.81  Aligned_cols=65  Identities=17%  Similarity=0.221  Sum_probs=34.6

Q ss_pred             HHHHCCCEEEEEEEC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf             863059758999721---------00111103679999999974100357677758999516888444220076999999
Q gi|254780791|r  165 RISCRFPLRVIIFPV---------KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA  235 (529)
Q Consensus       165 ~~~~r~p~~~~~~p~---------~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara  235 (529)
                      .|++|+..+|+|=.=         .+.|.+..     |++-+..+      +.+|+|++.=|||+.-       -.+++.
T Consensus        39 ~ls~~~~~~v~lkredlq~vd~p~viaGq~Ti-----a~EI~~Ql------~~pD~vv~pvGgGGl~-------aGi~~~  100 (236)
T 1tdj_A           39 KLSSRLDNVILVKREDRQPVDHPMVIAGQGTL-----ALELLQQD------AHLDRVFVPVGGGGLA-------AGVAVL  100 (236)
T ss_dssp             HHHHHTTSEEEEECGGGSTTCCHHHHHHHHHH-----HHHHHHHC------TTCCEEEEECSSSHHH-------HHHHHH
T ss_pred             HHHHHHCCEEEEEECCCCCCCCHHHHCCCCHH-----HHHHHHHC------CCCCEEEEECCHHHHH-------HHHHHH
T ss_conf             86698699899997788988571552424036-----77899875------8989899972750899-------999999


Q ss_pred             HH-HCCCEEEEEE
Q ss_conf             97-4890488520
Q gi|254780791|r  236 IA-NSSIPIISAI  247 (529)
Q Consensus       236 I~-~~~iPVisgI  247 (529)
                      +. ..|-+-|.||
T Consensus       101 ~k~~~p~~kiigV  113 (236)
T 1tdj_A          101 IKQLMPQIKVIAV  113 (236)
T ss_dssp             HHHHCTTCEEEEE
T ss_pred             HHHHCCCCCEEEE
T ss_conf             9874997605655


No 289
>>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (B:)
Probab=38.39  E-value=20  Score=14.36  Aligned_cols=66  Identities=24%  Similarity=0.362  Sum_probs=47.0

Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf             77758999516888444220076999999974890488520577752589886412377721456763323467776699
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLI  286 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~  286 (529)
                      ..||+|||.         .+=+|...++....+.||||+=+--.+|.+.+||.               +|...+-...+.
T Consensus       157 ~~Pd~iii~---------d~~~~~~ai~Ea~~l~IPvi~lvDTn~~p~~idyp---------------IP~Ndds~~si~  212 (256)
T 2vqe_B          157 RLPDAIFVV---------DPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI---------------IPGNDDAIRSIQ  212 (256)
T ss_dssp             SCCSEEEES---------CTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEE---------------CCSCSSCHHHHH
T ss_pred             HCCCEEEEE---------CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEE---------------EECCCCHHHHHH
T ss_conf             046469970---------67731899998885285189972135877656634---------------325885087999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9998887789
Q gi|254780791|r  287 NLEARLNNII  296 (529)
Q Consensus       287 ~l~~RL~~a~  296 (529)
                      -+..-+..++
T Consensus       213 li~~ll~~ai  222 (256)
T 2vqe_B          213 LILSRAVDLI  222 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999


No 290
>>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263)
Probab=38.37  E-value=20  Score=14.36  Aligned_cols=72  Identities=18%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHH-CCC--E-EEEEEE--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             28999847842589999998630-597--5-899972--10011110367999999997410035767775899951688
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISC-RFP--L-RVIIFP--VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~-r~p--~-~~~~~p--~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      .+++|||-.++-..+++...+++ .++  + .++..|  +.|=|++....|..|...           .+..|.+.+|+.
T Consensus        34 ~~~~ivTN~~~~~~~~~~~~L~~lg~~~~~~~i~~sp~~~~~VGD~~~~Di~~A~~a-----------G~~ti~v~~g~~  102 (131)
T 1zjj_A           34 IPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGEELWMVGDRLDTDIAFAKKF-----------GMKAIMVLTGVS  102 (131)
T ss_dssp             CCEEEEESCCSSCHHHHHHHHHTTTCCCCGGGEEEHTCEEEEEESCTTTHHHHHHHT-----------TCEEEEESSSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECHCCEEEEECCCHHHHHHHHHHC-----------CCCEEEECCCCC
T ss_conf             968999489999999999999976998881547511430799768817789999987-----------996999888999


Q ss_pred             CHHHHHHCC
Q ss_conf             844422007
Q gi|254780791|r  220 SIEDLWHFN  228 (529)
Q Consensus       220 S~eDL~~FN  228 (529)
                      +.+++...+
T Consensus       103 ~~~~~~~~~  111 (131)
T 1zjj_A          103 SLEDIKKSE  111 (131)
T ss_dssp             CHHHHTTCS
T ss_pred             CHHHHHHCC
T ss_conf             867885058


No 291
>>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:198-366)
Probab=37.75  E-value=21  Score=14.28  Aligned_cols=85  Identities=20%  Similarity=0.232  Sum_probs=50.7

Q ss_pred             EEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH--------------HHHCCHHHHHHHHHH
Q ss_conf             99972100-111103679999999974100357677758999516888444--------------220076999999974
Q gi|254780791|r  174 VIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED--------------LWHFNDEMIVRAIAN  238 (529)
Q Consensus       174 ~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD--------------L~~FN~e~laraI~~  238 (529)
                      +++|-... .-..-...+++|+..+....       +++-+++-|+|..++              +..++.+++..-++.
T Consensus        13 ~i~~~g~l~~~~Kg~~~li~a~~~l~~~~-------~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   85 (169)
T 2gek_A           13 TVLFLGRYDEPRKGMAVLLAALPKLVARF-------PDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRS   85 (169)
T ss_dssp             EEEEESCTTSGGGCHHHHHHHHHHHHTTS-------TTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCHHHHHCCC
T ss_conf             48999602466420267899877665208-------86210222232220012331255653899740233101110123


Q ss_pred             CCCEEEEEECCC-CCCHHHHHHHCCCCC
Q ss_conf             890488520577-752589886412377
Q gi|254780791|r  239 SSIPIISAIGHE-TDWTLADYAADLRAP  265 (529)
Q Consensus       239 ~~iPVisgIGHE-~D~Tl~D~VAD~Ra~  265 (529)
                      |.+-++..--+| .-.++.+..|-=...
T Consensus        86 ~~~~~~~~~~~e~~~~~~lEama~G~pv  113 (169)
T 2gek_A           86 ADVYCAPHLGGESFGIVLVEAMAAGTAV  113 (169)
T ss_dssp             SSEEEECCCSCCSSCHHHHHHHHHTCEE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCEE
T ss_conf             3222222234356754002211368419


No 292
>>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus} (B:1-124,B:272-291)
Probab=37.63  E-value=21  Score=14.27  Aligned_cols=90  Identities=8%  Similarity=0.014  Sum_probs=50.7

Q ss_pred             CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             16310265289998478425899999986305975899972---100111103679999999974100357677758999
Q gi|254780791|r  138 KNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP---VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       138 k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p---~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii  214 (529)
                      +.|-+.--+.+|.+=-++|-==+==--+...+-+..++.++   +.+...+...+.+.   .+..+.       +|+||+
T Consensus        27 ~~~~~l~gk~va~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsi~Dta~---vLs~~~-------~D~ivi   96 (144)
T 3d6n_B           27 EGKEETIKASAVLFFSEPSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLK---TFEGLG-------FDYVVF   96 (144)
T ss_dssp             TTCCCCCCCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHH---HHHHTT-------CSEEEE
T ss_pred             HCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH---HHHCCC-------CEEEEE
T ss_conf             2520036874999980897445999999999859988867710112667874889998---740256-------528998


Q ss_pred             ECC-CCCHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             516-888444220076999999974890488520
Q gi|254780791|r  215 ARG-GGSIEDLWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       215 ~RG-GGS~eDL~~FN~e~laraI~~~~iPVisgI  247 (529)
                      -++ +|....          .....+.+|||-|=
T Consensus        97 R~~~~~~~l~----------~~a~~s~vPVINa~  120 (144)
T 3d6n_B           97 RVPFVFFPYK----------EIVKSLNLRLVNAG  120 (144)
T ss_dssp             EESSCCCSCH----------HHHHTCSSEEEEEE
T ss_pred             CCCCCHHHHH----------HHHHCCCCCEEECC
T ss_conf             2453105799----------99731897789898


No 293
>>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} (A:)
Probab=37.59  E-value=21  Score=14.26  Aligned_cols=90  Identities=22%  Similarity=0.275  Sum_probs=47.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHH-HHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             289998478425899999986-305-975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRI-SCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~-~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      ++|-||-.  -.....++..+ ... +.+++..+..          =.+|+..+....+......||+||+      --+
T Consensus         3 ~~ILiVdd--d~~~~~~l~~~L~~~g~~~~v~~a~~----------g~eal~~l~~~~~~~~~~~pdliil------D~~   64 (140)
T 1k68_A            3 KKIFLVED--NKADIRLIQEALANSTVPHEVVTVRD----------GMEAMAYLRQEGEYANASRPDLILL------XLN   64 (140)
T ss_dssp             CEEEEECC--CHHHHHHHHHHHHTCSSCCEEEEECS----------HHHHHHHHTTCGGGGSCCCCSEEEE------CSS
T ss_pred             CCEEEEEC--CHHHHHHHHHHHHHCCCCCEEEEECC----------HHHHHHHHHHHHHHHCCCCCCEEEE------ECC
T ss_conf             82999979--99999999999996799818999899----------9999999986155540579988999------888


Q ss_pred             HHHCCHHHHHHHHHHC----CCEEE--EEECCCCCC
Q ss_conf             2200769999999748----90488--520577752
Q gi|254780791|r  224 LWHFNDEMIVRAIANS----SIPII--SAIGHETDW  253 (529)
Q Consensus       224 L~~FN~e~laraI~~~----~iPVi--sgIGHE~D~  253 (529)
                      |=..|-.++++.|-+.    .+|||  |+-+-+.+.
T Consensus        65 mP~~dG~el~~~ir~~~~~~~~pvI~lS~~~~~~~~  100 (140)
T 1k68_A           65 LPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDI  100 (140)
T ss_dssp             CSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH
T ss_conf             999964899999984876689978999578999999


No 294
>>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} (A:)
Probab=37.55  E-value=21  Score=14.26  Aligned_cols=101  Identities=19%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             CCCEEEEEEC----CCHHHHHHHHHHHH--HCCCEEEEEEEC-----------CCCCCCHHHHHHHHHHH--HH---HHC
Q ss_conf             6528999847----84258999999863--059758999721-----------00111103679999999--97---410
Q gi|254780791|r  144 IPKIIAVITS----PTGAVIRDILQRIS--CRFPLRVIIFPV-----------KVQGDECPKEIANAILQ--LN---TLK  201 (529)
Q Consensus       144 ~p~~i~vits----~~~a~~~D~~~~~~--~r~p~~~~~~p~-----------~vQG~~a~~~i~~ai~~--~~---~~~  201 (529)
                      -+|||+||.+    .+|.-..|+...+.  .+.++++.+...           ..+-......++.....  +.   ...
T Consensus         5 ~~kki~ill~~~~~~dG~~~~e~~~p~~~l~~ag~~v~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~   84 (232)
T 1vhq_A            5 TXKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVLIEAARITRGEIRPLA   84 (232)
T ss_dssp             -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEHHHHHCCCCCHH
T ss_conf             64669999658988775319899999999998899899994699846406258886236655446531010202567767


Q ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHC---------CHH--HHHHHHHHCCCEEEE
Q ss_conf             03576777589995168884442200---------769--999999748904885
Q gi|254780791|r  202 EGRTCPRPDIIILARGGGSIEDLWHF---------NDE--MIVRAIANSSIPIIS  245 (529)
Q Consensus       202 ~~~~~~~~D~iii~RGGGS~eDL~~F---------N~e--~laraI~~~~iPVis  245 (529)
                      + -....||+|++.-|.|+..|+--+         |.+  .+.+..++...||.+
T Consensus        85 ~-~~~~d~d~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a  138 (232)
T 1vhq_A           85 Q-ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAXHQAGKPLGF  138 (232)
T ss_dssp             G-CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEE
T ss_pred             H-CCHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf             8-79645878996698542888765330352022289999999999986996999


No 295
>>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:)
Probab=37.53  E-value=21  Score=14.25  Aligned_cols=46  Identities=9%  Similarity=0.099  Sum_probs=25.1

Q ss_pred             CCCEEEEECCCCCE-E------CCHHHCCCCCEEEEEEECEEEEEEEEECCCC
Q ss_conf             14619998489889-5------7778929998699999110999999505788
Q gi|254780791|r  459 KRGYTSIQDTNNNF-I------TQKRNLATKTRILINFFDGQANAIVINKAPP  504 (529)
Q Consensus       459 ~RGYaiv~~~~Gki-I------~s~~~l~~gd~i~i~l~DG~v~a~V~~k~~~  504 (529)
                      +|||-.|...+|.- +      .....+.+|+.++-.+..|.-.-+..+..+.
T Consensus        13 ~kGfGFI~~~~g~~~~f~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~~   65 (74)
T 2k5n_A           13 DKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTTNNKGLSAYAVKVV   65 (74)
T ss_dssp             TTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEECSSSEEEEEEEEC
T ss_pred             CCCEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEE
T ss_conf             99858984279981999966007987138999999999979998778899996


No 296
>>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} (A:)
Probab=37.44  E-value=21  Score=14.24  Aligned_cols=44  Identities=18%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH-----HHCCCEEEEEECCCCC
Q ss_conf             76777589995168884442200769999999-----7489048852057775
Q gi|254780791|r  205 TCPRPDIIILARGGGSIEDLWHFNDEMIVRAI-----ANSSIPIISAIGHETD  252 (529)
Q Consensus       205 ~~~~~D~iii~RGGGS~eDL~~FN~e~laraI-----~~~~iPVisgIGHE~D  252 (529)
                      ...+.|++++-|||-...    |+.+.|.-+.     ..++.|||.=..|-+.
T Consensus       223 s~GN~~~~l~~RG~~~~n----y~~~~vd~~~~~~~k~~~~~pvivD~SH~~~  271 (350)
T 1n8f_A          223 TSGNGDCHIILRGGKEPN----YSAKHVAEVKEGLNKAGLPAQVMIDFSHANS  271 (350)
T ss_dssp             ECCCSCEEEEECCSSSCC----CSHHHHHHHHHHHHHTTCCCCEEEECSGGGT
T ss_pred             CCCCCCCEEEEECCCCCC----CCHHHHHHHHHHHHHCCCCHHHHHHCCCCCC
T ss_conf             689987348986588899----8999999999999887998788651037764


No 297
>>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A (A:)
Probab=37.39  E-value=21  Score=14.24  Aligned_cols=86  Identities=20%  Similarity=0.207  Sum_probs=56.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      .+||-||-  +.+..++++..+-+.|++++..+...-          +|+..+..       ..||+||+      =-.|
T Consensus         2 ~~rILiVd--D~~~~~~~l~~~L~~~g~~v~~a~~~~----------~al~~~~~-------~~~dlii~------D~~l   56 (127)
T 2jba_A            2 ARRILVVE--DEAPIREMVCFVLEQNGFQPVEAEDYD----------SAVNQLNE-------PWPDLILL------AWML   56 (127)
T ss_dssp             CCEEEEEC--SCHHHHHHHHHHHHHTTCEEEEECSHH----------HHHTTCSS-------SCCSEEEE------ESEE
T ss_pred             CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEECCHH----------HHHHHHHH-------CCCCEEEE------ECCC
T ss_conf             99899997--999999999999998799999971317----------89999985-------34625886------3278


Q ss_pred             HHCCHHHHHHHHHH----CCCEEEEEECCCCCCHH
Q ss_conf             20076999999974----89048852057775258
Q gi|254780791|r  225 WHFNDEMIVRAIAN----SSIPIISAIGHETDWTL  255 (529)
Q Consensus       225 ~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl  255 (529)
                      =..|-.++++.|-.    ..+|||.-.+++...+.
T Consensus        57 P~~~G~~l~~~lr~~~~~~~~piI~ls~~~~~~~~   91 (127)
T 2jba_A           57 PGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDR   91 (127)
T ss_dssp             TTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
T ss_conf             99989999999983787899929999898999999


No 298
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350)
Probab=37.26  E-value=21  Score=14.22  Aligned_cols=97  Identities=12%  Similarity=0.148  Sum_probs=53.8

Q ss_pred             CEEEEEE-CCCH-H---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             2899984-7842-5---899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  146 KIIAVIT-SPTG-A---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       146 ~~i~vit-s~~~-a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      .+|++|. +..+ .   .+...+....+..++++.+..+    ++-+....+.++.+-...     .++|+||+.-...+
T Consensus         4 ~~I~~i~p~~~~n~F~~~v~~gie~aA~~~G~~l~v~~s----~~d~~~q~~~ie~lia~~-----~~vD~Iii~p~~~~   74 (208)
T 3h75_A            4 TSVVFLNPGNSTETFWVSYSQFXQAAARDLGLDLRILYA----ERDPQNTLQQARELFQGR-----DKPDYLXLVNEQYV   74 (208)
T ss_dssp             CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHSS-----SCCSEEEEECCSSH
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHCC-----CCEEEEEECCCCCC
T ss_conf             799998699888989999999999999973998999948----999999999999998479-----98699997784203


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEE---EECC-CCCCHHHHHH
Q ss_conf             4442200769999999748904885---2057-7752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIIS---AIGH-ETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVis---gIGH-E~D~Tl~D~V  259 (529)
                      .        ..+.+......||||+   .+.. .+++.-.|-.
T Consensus        75 ~--------~~~i~~a~~~gIPVV~ids~l~~~~~~~Vg~Dn~  109 (208)
T 3h75_A           75 A--------PQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQ  109 (208)
T ss_dssp             H--------HHHHHHHTTSCCEEEEEESCCCTTTC--------
T ss_pred             C--------HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             6--------9999999977994999266556531000013543


No 299
>>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} (A:89-256)
Probab=37.19  E-value=21  Score=14.21  Aligned_cols=92  Identities=5%  Similarity=-0.041  Sum_probs=57.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      |.+..+++++.-.+....+.....++.+++...|..=.+.--+.++-+++.           +++.++++.-..+-.-  
T Consensus        29 ~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ai~-----------~~~~~v~i~~~~~~tg--   95 (168)
T 1t3i_A           29 AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS-----------EKTKLVTVVHISNTLG--   95 (168)
T ss_dssp             TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC-----------TTEEEEEEESBCTTTC--
T ss_pred             CCCEEEECCCCCCCEEEHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC-----------CCCEEEEEECCCCCCC--
T ss_conf             998677103555010110433220268257753121223104988744027-----------8956999971245654--


Q ss_pred             HHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             2007699999997489048852057
Q gi|254780791|r  225 WHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       225 ~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                      ...+=+++++..-+..+++|.=-=|
T Consensus        96 ~~~~i~~i~~~~~~~~~~~i~D~~~  120 (168)
T 1t3i_A           96 CVNPAEEIAQLAHQAGAKVLVDACQ  120 (168)
T ss_dssp             BBCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             3580888888875058636875211


No 300
>>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} (A:)
Probab=36.80  E-value=11  Score=16.69  Aligned_cols=79  Identities=14%  Similarity=0.037  Sum_probs=45.4

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HH---HH-----------HCCHHHHHHHHHHCCCEEEE
Q ss_conf             110367999999997410035767775899951688-84---44---22-----------00769999999748904885
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---ED---LW-----------HFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eD---L~-----------~FN~e~laraI~~~~iPVis  245 (529)
                      .....++..++..+....      .+- +||.+|.| ..   -|   .+           .-.-..+..++..||.|||.
T Consensus        38 ~~~~~~l~~~l~~~~~d~------~~~-~vvi~g~g~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia  110 (258)
T 3lao_A           38 SAXLADLALAXGEYERSE------ESR-CAVLFAHGEHFTAGLDLXELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVV  110 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCT------TCC-EEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEE
T ss_pred             HHHHHHHHHHHHHHHHCC------CCE-EEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             999999999999997399------954-9999778986677871776353320345544555666999999738998899


Q ss_pred             EE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf             20-577752-5898864123777214
Q gi|254780791|r  246 AI-GHETDW-TLADYAADLRAPTPTG  269 (529)
Q Consensus       246 gI-GHE~D~-Tl~D~VAD~Ra~TPTa  269 (529)
                      +| ||=.-- .-.-+.+|+|..|+++
T Consensus       111 av~G~a~GgG~~lalacD~ria~~~a  136 (258)
T 3lao_A          111 AVQGTCWTAGIELXLNADIAVAARGT  136 (258)
T ss_dssp             EECSEEETHHHHHHHTSSEEEEETTC
T ss_pred             EEECEECCCCCHHHHHHHHHHHHHCC
T ss_conf             98085715753655403564350137


No 301
>>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (G:123-209)
Probab=36.77  E-value=21  Score=14.16  Aligned_cols=76  Identities=8%  Similarity=0.009  Sum_probs=49.3

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE--EEC
Q ss_conf             8999997054356888627999874-8947999997352105866814598899999966752884379999971--016
Q gi|254780791|r   35 VCVRGEISGYRGIHSSGHAYFSLKD-NHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESL--IPS  111 (529)
Q Consensus        35 ~~v~gEis~~~~~~~sGH~Yf~lkd-~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i--~~~  111 (529)
                      =-|.|.|++..   ..| ||-+|-. -.|-+.---+.......+-.++.|+.|.++.  .--.+.|...|.....  .+.
T Consensus         7 diV~G~V~~i~---~~g-~fVdi~~~~~g~l~is~~~~~~~~~~~~l~~Gd~V~a~V--~~vd~~~~i~Ls~k~~~~~~~   80 (87)
T 2nn6_G            7 DHVIGIVTAKS---GDI-FKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQF--VVANKDMEPEMVCIDSCGRAN   80 (87)
T ss_dssp             EEEEEEEEEEE---TTE-EEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEE--EECCTTSCCEEECSBTTTTBC
T ss_pred             CEEEEEEEEEC---CCE-EEEECCCCCCEEECCHHCCCCHHCCCCCCCCCCEEEEEE--EEECCCCCEEEEEECCCCCCC
T ss_conf             99999998982---873-899848985048750206770010476689999999999--994589975899863666434


Q ss_pred             CCCHH
Q ss_conf             80079
Q gi|254780791|r  112 GSGTL  116 (529)
Q Consensus       112 g~G~l  116 (529)
                      +.|.|
T Consensus        81 ~~G~l   85 (87)
T 2nn6_G           81 GMGVI   85 (87)
T ss_dssp             CCCSC
T ss_pred             CCCCC
T ss_conf             66724


No 302
>>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A (A:)
Probab=36.56  E-value=22  Score=14.14  Aligned_cols=82  Identities=16%  Similarity=0.121  Sum_probs=55.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEE---------------EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             289998478425899999986305975899---------------97210011110367999999997410035767775
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVI---------------IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPD  210 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~---------------~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D  210 (529)
                      .|++|||..++--=.-+.+.+.++- .+|+               .+.+-|+-..+....+..+....        ..+|
T Consensus         2 ~Kv~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~~~~~~~~~~~~dv~~~~~v~~~~~~~~~~~--------g~iD   72 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEAL--------GGLH   72 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHTCEEEECCTTTSCHHHHHHHHHHHH--------TSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC--------CCCC
T ss_conf             9889996787589999999999879-989999799999998669879984358899999999999981--------9998


Q ss_pred             EEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf             89995168884442200769999999
Q gi|254780791|r  211 IIILARGGGSIEDLWHFNDEMIVRAI  236 (529)
Q Consensus       211 ~iii~RGGGS~eDL~~FN~e~laraI  236 (529)
                      ++|-.=|.+....++-.++|..-+.+
T Consensus        73 ilinnAg~~~~~~~~~~~~~~~~~~~   98 (239)
T 2ekp_A           73 VLVHAAAVNVRKPALELSYEEWRRVL   98 (239)
T ss_dssp             EEEECCCCCCCCCTTTCCHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHCCHHHHHHHH
T ss_conf             99989988999990459999999999


No 303
>>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} (A:1-89)
Probab=36.16  E-value=20  Score=14.48  Aligned_cols=54  Identities=11%  Similarity=0.094  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             8007999999999976540122610016310265289998478425899999986305
Q gi|254780791|r  112 GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR  169 (529)
Q Consensus       112 g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r  169 (529)
                      ..|.+|..    .++|.++|+........--..++++=-||..+-+.+.+.+....+|
T Consensus        36 ~~g~iY~~----L~~L~~~GlI~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~l~~~~~~   89 (89)
T 1yg2_A           36 SHQQVYRE----LNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH   89 (89)
T ss_dssp             CHHHHHHH----HHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCCC
T ss_pred             CCCCHHHH----HHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCC
T ss_conf             97819999----9999977974788520689987637788888999999998555458


No 304
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:1-106,A:247-290)
Probab=35.76  E-value=22  Score=14.04  Aligned_cols=85  Identities=12%  Similarity=0.108  Sum_probs=54.0

Q ss_pred             CEEEEEECCCH-HHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             28999847842-58999999863---059758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSPTG-AVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~~~-a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      -+||||.+..+ --+..+.+-+.   ++.++.+++.++    ++.+..-.++|+.+-..       .+|.|||+=..+. 
T Consensus         3 ~~Igvi~~~~~~~f~~~i~~gie~aa~~~G~~v~l~~~----~~d~~~~~~~i~~l~~~-------~vdgIIi~~~~~~-   70 (150)
T 2fn9_A            3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS----QNDTAKESAHFDAIIAA-------GYDAIIFNPTDAD-   70 (150)
T ss_dssp             CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHT-------TCSEEEECCSCTT-
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHC-------CCCEEEEECCCCC-
T ss_conf             98999948998989999999999999985998999968----99989999999999965-------9986987315652-


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf             442200769999999748904885205
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIG  248 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIG  248 (529)
                            ........+.+..||||+-=.
T Consensus        71 ------~~~~~i~~l~~~gIPvV~id~   91 (150)
T 2fn9_A           71 ------GSIANVKRAKEAGIPVFCVDR   91 (150)
T ss_dssp             ------TTHHHHHHHHHTTCCEEEESS
T ss_pred             ------CHHHHHHHHHHCCCCCEEECC
T ss_conf             ------149999999975996256436


No 305
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276)
Probab=35.57  E-value=22  Score=14.02  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=50.1

Q ss_pred             EEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             8999847-842589999998630---597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  147 IIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       147 ~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      .||||.. .+...+..+++-+.+   .+++.+.++.+.-    .+......++.+...       ++|.||+.=..-+- 
T Consensus         1 TIgviv~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~----~~~~~~~~i~~ll~~-------~vDGIIl~~~~~~~-   68 (142)
T 2h0a_A            1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPILS----LARLKRYLENTTLAY-------LTDGLILASYDLTE-   68 (142)
T ss_dssp             CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCCCS----CCCCC---------C-------CCSEEEEESCCCC--
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEECCCCHH-
T ss_conf             989998888788999999999999998699899997899----869999999999855-------89878984133006-


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEEEECCC---CCCHHHHHH
Q ss_conf             4220076999999974890488520577---752589886
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIISAIGHE---TDWTLADYA  259 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVisgIGHE---~D~Tl~D~V  259 (529)
                              ...+.+....+|||. +|++   .|+..+|.|
T Consensus        69 --------~~~~~l~~~~iPvV~-id~~~~~~~~V~~Dn~   99 (142)
T 2h0a_A           69 --------RFEEGRLPTERPVVL-VDAQNPRYDSVYLDNV   99 (142)
T ss_dssp             -------------CCSCSSCEEE-ESSCCTTSEEEEECSH
T ss_pred             --------HHHHHHHHHCCCCCC-CCCCCCCCEEEEECHH
T ss_conf             --------789987651465212-2235764217873119


No 306
>>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} (A:)
Probab=35.33  E-value=20  Score=14.47  Aligned_cols=14  Identities=21%  Similarity=0.088  Sum_probs=9.8

Q ss_pred             CCCCCCEEEEEEEE
Q ss_conf             81459889999996
Q gi|254780791|r   79 LPEEGIEFLVIGKI   92 (529)
Q Consensus        79 ~~~~G~~v~~~g~~   92 (529)
                      .|+.|+.|.+.|..
T Consensus       127 ~~~~g~~v~~~G~p  140 (239)
T 1l1j_A          127 KVKIGEWAIAIGNP  140 (239)
T ss_dssp             GCCTTCEEEEEECT
T ss_pred             CCCCCCEEEEEECC
T ss_conf             13569989998678


No 307
>>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} (A:)
Probab=35.33  E-value=22  Score=13.99  Aligned_cols=69  Identities=9%  Similarity=-0.073  Sum_probs=39.2

Q ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH
Q ss_conf             99998630597589997210011110367999999997410035767775899951688844422007699999997
Q gi|254780791|r  161 DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA  237 (529)
Q Consensus       161 D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~  237 (529)
                      +.+..+.+.++-++..+++=|.-.++...+++.+...        ...+|++|-.-|.+....+.-+.+++.-+.+-
T Consensus        52 ~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~--------~g~idilvnnag~~~~~~~~~~~~~~~~~~~~  120 (256)
T 3ezl_A           52 VKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE--------VGEIDVLVNNAGITRDVVFRKMTREDWQAVID  120 (256)
T ss_dssp             HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH--------TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCCEEEECCCCCCCCCHHHCCHHHHHHHHH
T ss_conf             9999999844997899975779999999999999998--------19986999889877777732399999999999


No 308
>>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} (A:)
Probab=35.23  E-value=23  Score=13.98  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE---------------------EEECCCCCCCHHHHHHHHHHHH
Q ss_conf             6310265289998478425899999986305975899---------------------9721001111036799999999
Q gi|254780791|r  139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI---------------------IFPVKVQGDECPKEIANAILQL  197 (529)
Q Consensus       139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~---------------------~~p~~vQG~~a~~~i~~ai~~~  197 (529)
                      .+.+.+-.|+++||..++--=.-+.+.+.++- .+|+                     .+.+-|........+++.+...
T Consensus        22 ~~~~~l~gk~vlITGas~GIG~aiA~~la~~G-~~V~i~~r~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  100 (277)
T 3gvc_A           22 MNHPDLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             -----CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             99989999989994878789999999999879-98999969889999999985897389984589999999999999985


Q ss_pred             HHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH
Q ss_conf             7410035767775899951688844422007699999997
Q gi|254780791|r  198 NTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA  237 (529)
Q Consensus       198 ~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~  237 (529)
                      .        ..+|++|-.-|++...+++.+++++.-+.+.
T Consensus       101 ~--------g~idilvnnag~~~~~~~~~~~~~~~~~~~~  132 (277)
T 3gvc_A          101 F--------GGVDKLVANAGVVHLASLIDTTVEDFDRVIA  132 (277)
T ss_dssp             H--------SSCCEEEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred             C--------CCCCEEEECCCCCCCCCHHHCCHHHHHHHHH
T ss_conf             8--------9985899899899999903499999999999


No 309
>>2qf3_A Protease DEGS; periplasmic stress sensor, HTRA, allosteric activation, hydrolase; 2.04A {Escherichia coli K12} (A:)
Probab=35.20  E-value=23  Score=13.97  Aligned_cols=12  Identities=33%  Similarity=0.324  Sum_probs=6.7

Q ss_pred             CCCCEEEEEEEE
Q ss_conf             459889999996
Q gi|254780791|r   81 EEGIEFLVIGKI   92 (529)
Q Consensus        81 ~~G~~v~~~g~~   92 (529)
                      +.|..|.+.|..
T Consensus       137 ~~g~~v~~~g~p  148 (243)
T 2qf3_A          137 HIGDVVLAIGNP  148 (243)
T ss_dssp             CTTBEEEEEECG
T ss_pred             CCCEEEEEEECC
T ss_conf             442289998223


No 310
>>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} (A:)
Probab=34.98  E-value=23  Score=13.94  Aligned_cols=55  Identities=16%  Similarity=0.270  Sum_probs=31.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-HHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             100111103679999999974100357677758999516888-4442200769999999748904885
Q gi|254780791|r  179 VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-IEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       179 ~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      ..+.+......|++..+..          ++|+||+++-|.+ +..+ .|.+ ..-+-+-++++||+.
T Consensus        80 ~~~~~g~~~~~I~~~a~~~----------~~dliviG~~~~~~~~~~-~~gs-~~~~ll~~~~~pVli  135 (137)
T 2z08_A           80 ALLLEGVPAEAILQAARAE----------KADLIVMGTRGLGALGSL-FLGS-QSQRVVAEAPCPVLL  135 (137)
T ss_dssp             EEEEESSHHHHHHHHHHHT----------TCSEEEEESSCTTCCSCS-SSCH-HHHHHHHHCSSCEEE
T ss_pred             EEEEECCHHHHHHHHHHHH----------HHHHEEECCCCCCCCCCC-CCCH-HHHHHHHCCCCCEEE
T ss_conf             9998057489999987654----------445225556799851103-1470-999999648998999


No 311
>>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} (A:)
Probab=34.67  E-value=23  Score=13.91  Aligned_cols=88  Identities=15%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-------------EEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             310265289998478425899999986305975899-------------9721001111036799999999741003576
Q gi|254780791|r  140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI-------------IFPVKVQGDECPKEIANAILQLNTLKEGRTC  206 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-------------~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~  206 (529)
                      +.|.+-.|+++||..++--=..+.+.+.++. .+|+             .+.+-|.+..+...++..+....        
T Consensus         9 ~~~~l~gk~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~~~--------   79 (247)
T 1uzm_A            9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQ--------   79 (247)
T ss_dssp             CCCCCCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHH--------
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHC--------
T ss_conf             9959999979993888889999999999879-9899997982210675389964489999999999999856--------


Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf             777589995168884442200769999999
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAI  236 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI  236 (529)
                      ..+|++|-.-|.+-..++.-+++++.-+.+
T Consensus        80 g~id~linnAg~~~~~~~~~~~~~~~~~~~  109 (247)
T 1uzm_A           80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVI  109 (247)
T ss_dssp             SSCSEEEEECSCCC-----CCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCCHHHCCHHHHHHHH
T ss_conf             982389875112465226659999999999


No 312
>>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108)
Probab=34.62  E-value=23  Score=13.90  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      +||-||..  .+...+++...-+.|++++....          +--.|++.+...       .||+||+=-      .|=
T Consensus         4 ~~VLiVdd--~~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~l~~~-------~~dliilD~------~lp   58 (108)
T 3c3m_A            4 YTILVVDD--SPXIVDVFVTXLERGGYRPITAF----------SGEECLEALNAT-------PPDLVLLDI------XXE   58 (108)
T ss_dssp             CEEEEECS--CHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEEES------CCS
T ss_pred             CEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CCHHHHHHHHHH-------CCCCEEECC------CCC
T ss_conf             98999989--89999999999998799999833----------531189988642-------332044112------568


Q ss_pred             HCCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf             0076999999974----890488520577752
Q gi|254780791|r  226 HFNDEMIVRAIAN----SSIPIISAIGHETDW  253 (529)
Q Consensus       226 ~FN~e~laraI~~----~~iPVisgIGHE~D~  253 (529)
                      ..|-.++++.|-+    ..+|||-=-|+....
T Consensus        59 ~~dG~~l~~~ir~~~~~~~~Pii~lt~~~~~~   90 (108)
T 3c3m_A           59 PXDGWETLERIKTDPATRDIPVLXLTAKPLTP   90 (108)
T ss_dssp             SSCHHHHHHHHHHSTTTTTSCEEEEESSCCCH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEEECCCCHH
T ss_conf             99869999999848655799889984578799


No 313
>>1pk6_B C1Q, complement C1Q subcomponent, B chain precursor; complement system, immunology, jellyroll, IGG, immune system; 1.85A {Homo sapiens} (B:)
Probab=34.62  E-value=23  Score=13.90  Aligned_cols=59  Identities=10%  Similarity=0.147  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCEEEEEEE---CCCCEEEEEEECCCCCC------------------CCCCCCCCCEEEEEEEEE--EECCC
Q ss_conf             05435688862799987---48947999997352105------------------866814598899999966--75288
Q gi|254780791|r   42 SGYRGIHSSGHAYFSLK---DNHSRIDAIIWKGTLNK------------------IEFLPEEGIEFLVIGKIT--TFPGS   98 (529)
Q Consensus        42 s~~~~~~~sGH~Yf~lk---d~~a~i~~~~~~~~~~~------------------~~~~~~~G~~v~~~g~~~--~y~~~   98 (529)
                      .-|+ .+..|.+||+.-   .....+...+-++....                  +-..++.||+|.+...-.  +|...
T Consensus        40 G~Ft-~p~~GvY~F~~~~~~~~~~~~~v~l~~n~~~~~~~~~~~~~~~~~~~S~s~il~L~~GD~V~l~l~~~~~~~~~~  118 (132)
T 1pk6_B           40 GKFT-CKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGME  118 (132)
T ss_dssp             TEEE-CSSCEEEEEEEEEEESSCEEEEEEEESSSEEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEEEEEECCBCBT
T ss_pred             CEEE-CCCCCEEEEEEEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEEECCC
T ss_conf             8697-775748999999994796488888840042489998137998643286899999089999999996896075379


Q ss_pred             CEE
Q ss_conf             437
Q gi|254780791|r   99 SKY  101 (529)
Q Consensus        99 g~~  101 (529)
                      ..|
T Consensus       119 ~~~  121 (132)
T 1pk6_B          119 GAN  121 (132)
T ss_dssp             TBC
T ss_pred             CCC
T ss_conf             994


No 314
>>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:23-266)
Probab=34.46  E-value=14  Score=15.71  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=18.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEECCCCCH
Q ss_conf             11110367999999997410035767775-89995168884
Q gi|254780791|r  182 QGDECPKEIANAILQLNTLKEGRTCPRPD-IIILARGGGSI  221 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D-~iii~RGGGS~  221 (529)
                      -|-.|+.+|.+.++.+..         -| ||+++-||||-
T Consensus        82 ~s~~Aa~~il~~~~~~~~---------~dlvl~LiSGGgSA  113 (244)
T 1x3l_A           82 KSILGAKEALSILNRARE---------NDIVFILISGGGSA  113 (244)
T ss_dssp             HHHHHHHHHHHHHHHCCT---------TSEEEEEECTTHHH
T ss_pred             HHHHHHHHHHHHHHHCCC---------CCEEEEEEECCCCC
T ss_conf             789999999999970898---------77489998478631


No 315
>>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* (A:28-234,A:388-429)
Probab=34.46  E-value=23  Score=13.88  Aligned_cols=102  Identities=20%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             CCCCEEEEEEC-CCHHHHHHHHHHH----HHCCC-EEEEEEECCCCC------------------------------CCH
Q ss_conf             26528999847-8425899999986----30597-589997210011------------------------------110
Q gi|254780791|r  143 FIPKIIAVITS-PTGAVIRDILQRI----SCRFP-LRVIIFPVKVQG------------------------------DEC  186 (529)
Q Consensus       143 ~~p~~i~vits-~~~a~~~D~~~~~----~~r~p-~~~~~~p~~vQG------------------------------~~a  186 (529)
                      .-+++|||+|| -...++.++++-+    .++++ .+|+-+.-=.+|                              -..
T Consensus        68 ~~~~~i~IvtsGG~aPGlN~vI~giv~~l~~~~~~~~v~G~~~G~~GL~~~~~~~~~~lt~~~v~~i~~~GGs~LGssR~  147 (249)
T 2hig_A           68 PTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRG  147 (249)
T ss_dssp             GGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEECCCCC
T ss_conf             77878999886887476899999999999997599389998620588615986421018999984287479717206899


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf             367999999997410035767775899951688844422007699999997489048852057775258
Q gi|254780791|r  187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL  255 (529)
Q Consensus       187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl  255 (529)
                      ....-++++.+.+++       +|.++++=|-||......+.+|-..+   .++|+|| ||-.-+|--|
T Consensus       148 ~~~~~~i~~~l~~~~-------I~~LviIGGdgS~~~a~~L~e~~~~~---~~~i~Vv-gIPKTIDNDi  205 (249)
T 2hig_A          148 PQDPKEMVDTLERLG-------VNILFTVGGDGTQRGALVISQEAKRR---GVDISVF-GVPKTIDNDL  205 (249)
T ss_dssp             CCCHHHHHHHHHHHT-------CSEEEEEECHHHHHHHHHHHHHHHHH---TCCCEEE-EEECCTTSSC
T ss_pred             CCCHHHHHHHHHHHC-------CCEEEEECCHHHHHHHHHHHHHHHHC---CCCCEEE-ECCCCCCCCC
T ss_conf             745999999999859-------98899964707899999999998861---8983288-3364226777


No 316
>>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, PSI-2, protein structure initiative; 2.80A {Archaeoglobus fulgidus} (A:)
Probab=34.45  E-value=23  Score=13.88  Aligned_cols=80  Identities=14%  Similarity=0.214  Sum_probs=54.9

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             65289998478425899999986305975-89997210011110367999999997410035767775899951688844
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      .-++|+||..+....-  |    + -.++ ++  |+     -..+.++.++|+.+-...      ++.+|+|      .|
T Consensus         8 ~m~~IaViGd~dtv~G--F----r-LaGi~~~--~~-----v~~~ee~~~~l~~l~~~~------~~gII~i------te   61 (102)
T 2i4r_A            8 HSHXLAVVGDPDFTIG--F----X-LAGISDI--YE-----VTSDEEIVKAVEDVLKRD------DVGVVIX------KQ   61 (102)
T ss_dssp             -CCEEEEEECHHHHHH--H----H-HTTCCCE--EE-----CCSHHHHHHHHHHHHHCS------SEEEEEE------EG
T ss_pred             CCEEEEEEECHHHHHH--H----H-HHCCCCC--CC-----CCCHHHHHHHHHHHHCCC------CEEEEEE------EH
T ss_conf             4279999958899888--8----9-8288751--66-----899899999999985279------8489997------08


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf             422007699999997489048852057
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIISAIGH  249 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVisgIGH  249 (529)
                      ++..--.+.+-+.+.++.+|+|.-|.-
T Consensus        62 ~~~~~i~~~i~~~~~~~~~P~Ii~IP~   88 (102)
T 2i4r_A           62 EYLKKLPPVLRREIDEKVEPTFVSVGG   88 (102)
T ss_dssp             GGSTTSCHHHHTTTTTCCSSEEEEEC-
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             999874799999985689778999699


No 317
>>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482} (A:)
Probab=34.36  E-value=23  Score=13.87  Aligned_cols=20  Identities=15%  Similarity=0.152  Sum_probs=11.7

Q ss_pred             EEEEEEEEECCCCEEEEEEE
Q ss_conf             99999667528843799999
Q gi|254780791|r   87 LVIGKITTFPGSSKYQIIIE  106 (529)
Q Consensus        87 ~~~g~~~~y~~~g~~ql~v~  106 (529)
                      ...-.|++|...|.-.+.|.
T Consensus       131 ~~~~~i~if~gn~~a~v~v~  150 (176)
T 3fyf_A          131 SATVSIVLTGGTNQASVTIN  150 (176)
T ss_dssp             EEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEC
T ss_conf             89999999379953699976


No 318
>>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} (A:)
Probab=34.23  E-value=23  Score=13.85  Aligned_cols=30  Identities=17%  Similarity=0.486  Sum_probs=14.2

Q ss_pred             CEEEEEEECCCCCC---CCCCCCCCCEEEEEEE
Q ss_conf             47999997352105---8668145988999999
Q gi|254780791|r   62 SRIDAIIWKGTLNK---IEFLPEEGIEFLVIGK   91 (529)
Q Consensus        62 a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~   91 (529)
                      ..+.++++-.....   +......|.-|++.+.
T Consensus        63 ~~vdGii~~~~~~~~~~~~~~~~~~~pvv~i~~   95 (287)
T 3bbl_A           63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGR   95 (287)
T ss_dssp             TCCSEEEECSCCTTCHHHHHHHHTTCCEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             896789995687997999999965998899851


No 319
>>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:94-292)
Probab=34.11  E-value=23  Score=13.84  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=38.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCC-CEEEE-EEEC-------------CC-------C-CCCHHHHHHHHHHHHHHHC
Q ss_conf             52899984784258999999863059-75899-9721-------------00-------1-1110367999999997410
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRF-PLRVI-IFPV-------------KV-------Q-GDECPKEIANAILQLNTLK  201 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~-p~~~~-~~p~-------------~v-------Q-G~~a~~~i~~ai~~~~~~~  201 (529)
                      |.||+++.|..++.+..++....... +.++. ++..             ++       + ......++.+.++..    
T Consensus         2 ~~ki~~~gs~~~~~l~~ll~~~~~~~~~~~i~~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----   77 (199)
T 3lou_A            2 RPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETS----   77 (199)
T ss_dssp             CCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHH----
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC----
T ss_conf             8459999769983699999998779987489999548957599998626998999568885678999999999754----


Q ss_pred             CCCCCCCCCEEEEECCCC
Q ss_conf             035767775899951688
Q gi|254780791|r  202 EGRTCPRPDIIILARGGG  219 (529)
Q Consensus       202 ~~~~~~~~D~iii~RGGG  219 (529)
                            .+|++|++.-+.
T Consensus        78 ------~~D~iv~~~~~~   89 (199)
T 3lou_A           78 ------GAELVILARYXQ   89 (199)
T ss_dssp             ------TCSEEEESSCCS
T ss_pred             ------CCCEEEEECCCC
T ss_conf             ------981999801267


No 320
>>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I (I:)
Probab=33.98  E-value=23  Score=13.93  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=18.7

Q ss_pred             CCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC
Q ss_conf             76777589995168884442200769999999748
Q gi|254780791|r  205 TCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANS  239 (529)
Q Consensus       205 ~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~  239 (529)
                      ...+||+.|-+.|||-..-     -+.+.-+|+.+
T Consensus        54 ~~~~~Di~i~V~GGG~~gQ-----a~Air~aiara   83 (138)
T 3jyv_I           54 KFSNIDIRVRVTGGGHVSQ-----VYAIRQAIAKG   83 (138)
T ss_dssp             SSSSEEEEEEEESCCTTTH-----HHHHHHHHHHT
T ss_pred             CCCCCCEEEEEECCCHHHH-----HHHHHHHHHHH
T ss_conf             3365016999967864279-----86999999999


No 321
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:1-114,A:247-292)
Probab=33.91  E-value=23  Score=13.81  Aligned_cols=87  Identities=13%  Similarity=0.211  Sum_probs=55.2

Q ss_pred             CCEEEEEECCCHH------HHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             5289998478425------89999998630---59758999721001111036799999999741003576777589995
Q gi|254780791|r  145 PKIIAVITSPTGA------VIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       145 p~~i~vits~~~a------~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      -..||||++..+.      -+.++++.+.+   ...+.++++++.    +.+......++.+...       .+|.|||+
T Consensus         8 s~~Igvi~p~~~~~~~~~~f~~~l~~gi~~~~~~~g~~lil~~~~----~~~~~~~~~~~~l~~~-------~vDGiIi~   76 (160)
T 3k4h_A            8 TKTLGLVXPSSASKAFQNPFFPEVIRGISSFAHVEGYALYXSTGE----TEEEIFNGVVKXVQGR-------QIGGIILL   76 (160)
T ss_dssp             CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCC----SHHHHHHHHHHHHHTT-------CCCEEEES
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHCC-------CCCEEEEE
T ss_conf             797999976776564448899999999999999859999998389----9889999999998637-------86657653


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             1688844422007699999997489048852057775
Q gi|254780791|r  216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETD  252 (529)
Q Consensus       216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D  252 (529)
                      -..-         +...++...+..||+|. |+...+
T Consensus        77 ~~~~---------~~~~~~~l~~~~iPvV~-id~~~~  103 (160)
T 3k4h_A           77 YSRE---------NDRIIQYLHEQNFPFVL-IGKPYD  103 (160)
T ss_dssp             CCBT---------TCHHHHHHHHTTCCEEE-ESCCSS
T ss_pred             CCCC---------CCHHHHHHHHCCCCCCC-CCCCCC
T ss_conf             0234---------31233345532532233-465544


No 322
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:1-112,A:258-309)
Probab=33.90  E-value=24  Score=13.81  Aligned_cols=100  Identities=8%  Similarity=0.032  Sum_probs=58.4

Q ss_pred             CEEEEEECCCHHHHHHH-HHHHH---HCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             28999847842589999-99863---059-75899972100111103679999999974100357677758999516888
Q gi|254780791|r  146 KIIAVITSPTGAVIRDI-LQRIS---CRF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~-~~~~~---~r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      .+|||+.+.-..-+... ++-+.   +.. .+.+.++++.-    -...-.+.++.+-..       ++|.|||.=....
T Consensus         3 ~~IGv~~~~~~d~f~~~l~~gi~~~a~~~~g~~l~~~~~~~----d~~~q~~~i~~li~~-------~vDgIIi~~~d~~   71 (164)
T 2fvy_A            3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN----DQSKQNDQIDVLLAK-------GVKALAINLVDPA   71 (164)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTT----CHHHHHHHHHHHHHT-------TCSEEEECCSSGG
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC----CHHHHHHHHHHHHHC-------CCCEEEEECCCCH
T ss_conf             88999969998999999999999999876993799975999----999999999999975-------9988997132101


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCC
Q ss_conf             4442200769999999748904885205777525898864-1237
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA-DLRA  264 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA-D~Ra  264 (529)
                             ....+...+.+..||||.- +.+.+..-.++|. |...
T Consensus        72 -------~~~~~i~~a~~agIPvV~v-n~~~~~~~~~~v~~d~~~  108 (164)
T 2fvy_A           72 -------AAGTVIEKARGQNVPVVFF-NKEPSRKALDSYDKAYYV  108 (164)
T ss_dssp             -------GHHHHHHHHHTTTCCEEEE-SSCCCHHHHHTCTTEEEE
T ss_pred             -------HHHHHHHHHHHCCCCEECC-CCCCCCCCCCCCCCCEEE
T ss_conf             -------3699999998459630003-654444323357874078


No 323
>>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} (A:43-218)
Probab=33.84  E-value=24  Score=13.80  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=54.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHH
Q ss_conf             1110367999999997410035767775899951-68884442200769999999748904885205777--52589886
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHET--DWTLADYA  259 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~--D~Tl~D~V  259 (529)
                      +.+....+++.|..++....     .-.+++.+- .||+..     .-..++.+|..++.||++=++..-  -=+++=..
T Consensus        13 ~~~~~~~i~~~l~~~~~~~~-----~~~i~l~InSpGG~v~-----~~~~i~~~i~~~~~~v~~~~~g~aaS~a~~i~~a   82 (176)
T 1y7o_A           13 EDNXANSVIAQLLFLDAQDS-----TKDIYLYVNTPGGSVS-----AGLAIVDTXNFIKADVQTIVXGXAASXGTVIASS   82 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHHCT-----TSCEEEEEEECCBCHH-----HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHH-----HHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEE
T ss_conf             68999999999999863376-----6757998038878776-----8999999998565664999865745755224551


Q ss_pred             HCCCCCCCHHH
Q ss_conf             41237772145
Q gi|254780791|r  260 ADLRAPTPTGA  270 (529)
Q Consensus       260 AD~Ra~TPTaA  270 (529)
                      +|.+.-.|++-
T Consensus        83 ~~~~~~~~~~~   93 (176)
T 1y7o_A           83 GAKGKRFXLPN   93 (176)
T ss_dssp             SCTTCEEECTT
T ss_pred             CCCCCEEEEHH
T ss_conf             26883697255


No 324
>>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV} (A:)
Probab=33.69  E-value=18  Score=14.83  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             ECCCCCHHHHHHCCHHHHHHHHHHC
Q ss_conf             5168884442200769999999748
Q gi|254780791|r  215 ARGGGSIEDLWHFNDEMIVRAIANS  239 (529)
Q Consensus       215 ~RGGGS~eDL~~FN~e~laraI~~~  239 (529)
                      .+|||-..||.-|=+|.|---|++-
T Consensus        24 ~qGggrKGDLSrFiEeAVr~~ife~   48 (51)
T 2k6l_A           24 AQGGGRKGDLSRFIEDAVRAYLFER   48 (51)
T ss_dssp             HHCSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             5079864429999999999999998


No 325
>>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259)
Probab=33.47  E-value=24  Score=13.76  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH-CCC--EEEEEEE----CCCCCCCHHHHHHH
Q ss_conf             9999997654012261001631026528999847842589999998630-597--5899972----10011110367999
Q gi|254780791|r  120 LEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISC-RFP--LRVIIFP----VKVQGDECPKEIAN  192 (529)
Q Consensus       120 ~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~-r~p--~~~~~~p----~~vQG~~a~~~i~~  192 (529)
                      ..++.++|++.|+              +++|||..++.-..++...+.. .+.  +..++-.    +.+=|+.-...|..
T Consensus        28 ~~e~L~~L~~~G~--------------~~~iiTN~~~~~~~~~~~~L~~~Gl~~~f~~ii~~~p~~~~~VGD~~~~Di~~   93 (140)
T 2ho4_A           28 AQEALKRLRATSV--------------XVRFVTNTTKETKKDLLERLKKLEFEISEDEIFTSAPEEAVXIGDDCRDDVDG   93 (140)
T ss_dssp             HHHHHHHHHTSSC--------------EEEEEECCSSCCHHHHHHHHHHTTCCCCGGGEEEHCGGGEEEEESCTTTTHHH
T ss_pred             HHHHHHHHHHCCC--------------CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECHCCCCCEEECCCHHHHHHH
T ss_conf             9999999998699--------------88999489989999999998630467770057217631124743783758999


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHC
Q ss_conf             99999741003576777589995168884442200
Q gi|254780791|r  193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF  227 (529)
Q Consensus       193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~F  227 (529)
                      |-..           .+..|.+.+|.++.+++...
T Consensus        94 a~~~-----------G~~ti~v~~g~~~~~~~~~~  117 (140)
T 2ho4_A           94 AQNI-----------GXLGILVKTGKYKAADEEKI  117 (140)
T ss_dssp             HHHT-----------TCEEEEESSTTCCTTGGGGS
T ss_pred             HHHC-----------CCCEEEECCCCCCHHHHHCC
T ss_conf             9987-----------99299989999996786146


No 326
>>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis} (A:)
Probab=33.19  E-value=22  Score=13.99  Aligned_cols=34  Identities=12%  Similarity=0.065  Sum_probs=25.6

Q ss_pred             HHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC
Q ss_conf             220076999999974890488520577752589886412
Q gi|254780791|r  224 LWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL  262 (529)
Q Consensus       224 L~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~  262 (529)
                      .-.+.|..|||++|..     +.+|.++...+-.-||.+
T Consensus        85 IPiv~d~~LAr~L~~~-----~~~g~~IP~ely~aVA~i  118 (123)
T 2jli_A           85 VPILQRIPLARALYWD-----ALVDHYIPAEQIEATAEV  118 (123)
T ss_dssp             CCEEECHHHHHHHHHH-----CCTTSBCCGGGHHHHHHH
T ss_pred             CCEEECHHHHHHHHHC-----CCCCCCCCHHHHHHHHHH
T ss_conf             9889789999999974-----889890699999999999


No 327
>>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3} (A:)
Probab=33.11  E-value=24  Score=13.71  Aligned_cols=52  Identities=15%  Similarity=0.122  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHH-HCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             0367999999997410035767775899951-688844422-0076999999974890488520577
Q gi|254780791|r  186 CPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLW-HFNDEMIVRAIANSSIPIISAIGHE  250 (529)
Q Consensus       186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~-~FN~e~laraI~~~~iPVisgIGHE  250 (529)
                      ....|+++.+..          ++|+||+++ |-|.....+ .-..+.   -+..|+.||+.-=.+.
T Consensus       105 ~~~~I~~~a~~~----------~~dliv~G~~~~~~~~~~~~gs~~~~---i~~~~~~pVlvv~~~~  158 (170)
T 2dum_A          105 PWDEIVKVAEEE----------NVSLIILPSRGKLSLSHEFLGSTVMR---VLRKTKKPVLIIKEVD  158 (170)
T ss_dssp             HHHHHHHHHHHT----------TCSEEEEESCCCCC--TTCCCHHHHH---HHHHCSSCEEEECCCC
T ss_pred             HHHHHHHHHHCC----------CCEEEEEECCCCCCCCCCCCCCHHHH---HHHCCCCCEEEECCCC
T ss_conf             265555654136----------75079985368986554500769999---9962899899986874


No 328
>>2zwm_A Transcriptional regulatory protein YYCF; two-component system, response regulator, dimerization domain, phosphorylation site, cytoplasm; 2.04A {Bacillus subtilis} (A:)
Probab=33.05  E-value=24  Score=13.70  Aligned_cols=84  Identities=23%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      .+||-||-  +...+.++++.+-..|++++..+...          ..|+..+...       .||+||+-=.      |
T Consensus         2 ~~rVLiVD--D~~~~~~~l~~~L~~~g~~v~~a~~~----------~eAl~~l~~~-------~~dlvi~D~~------m   56 (130)
T 2zwm_A            2 DKKILVVD--DEKPIADILEFNLRKEGYEVHCAHDG----------NEAVEMVEEL-------QPDLILLDIM------L   56 (130)
T ss_dssp             CCEEEEEC--SCHHHHHHHHHHHHHHTCEEEEECSH----------HHHHHHHHHH-------CCSEEEEETT------C
T ss_pred             CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHC-------CCCEEECCCC------C
T ss_conf             97099998--99999999999999879999995869----------9999999837-------9998981477------9


Q ss_pred             HHCCHHHHHHHHHH-CCCEEEEEECCCCCC
Q ss_conf             20076999999974-890488520577752
Q gi|254780791|r  225 WHFNDEMIVRAIAN-SSIPIISAIGHETDW  253 (529)
Q Consensus       225 ~~FN~e~laraI~~-~~iPVisgIGHE~D~  253 (529)
                      -..|...+++.+.. .++|+|.-.||....
T Consensus        57 P~~dg~~~~~~~~~~~~~~~i~~t~~~~~~   86 (130)
T 2zwm_A           57 PNKDGVEVCREVRKKYDMPIIMLTAKDSEI   86 (130)
T ss_dssp             SSSCHHHHHHHHHHHCCSCEEEEEETTCHH
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEECCCCHH
T ss_conf             999999999999807999099997779999


No 329
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:1-114,A:247-295)
Probab=33.02  E-value=24  Score=13.70  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             CCEEEEEECC------CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             5289998478------42589999998630---59758999721001111036799999999741003576777589995
Q gi|254780791|r  145 PKIIAVITSP------TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       145 p~~i~vits~------~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      -+.||||.+.      +..-+.++++-+.+   ..++.+.++++.-    .+......++.+...       .+|.+||.
T Consensus         7 s~tIgvIip~~~~~~~~npff~~ii~gI~~~a~~~Gy~lii~~~~~----~~~~~~~~i~~l~~~-------~vDGiII~   75 (163)
T 3hcw_A            7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNN----MNDLMDEVYKMIKQR-------MVDAFILL   75 (163)
T ss_dssp             SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCS----HHHHHHHHHHHHHTT-------CCSEEEES
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEE
T ss_conf             6989999906876665696899999999999998599899997899----979999999999966-------99849997


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf             168884442200769999999748904885205777525898864
Q gi|254780791|r  216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA  260 (529)
Q Consensus       216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA  260 (529)
                      -.         ..+....+.+.+..+|+|. |+...+..-+++|.
T Consensus        76 ~~---------~~~~~~i~~l~~~~iPvVl-id~~~~~~~~~~V~  110 (163)
T 3hcw_A           76 YS---------KENDPIKQMLIDESMPFIV-IGKPTSDIDHQFTH  110 (163)
T ss_dssp             CC---------CTTCHHHHHHHHTTCCEEE-ESCCCSSGGGGSCE
T ss_pred             EC---------CCCCHHHHHHHHHHCCCEE-EECCCCCCCCCEEC
T ss_conf             22---------5531567888864010002-53035667765302


No 330
>>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} (B:)
Probab=32.85  E-value=24  Score=13.68  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      ++|+||--.++= .+.+.+.+.... .++.++|....-       ...+...          .++.+++.=|.++..|.|
T Consensus         2 ~~i~iid~g~~~-~~~~~~~l~~~g-~~~~v~~~~~~~-------~~~~~~~----------~~~~~~~~g~~~~~~~~~   62 (195)
T 1qdl_B            2 DLTLIIDNYDSF-VYNIAQIVGELG-SYPIVIRNDEIS-------IKGIERI----------DPDRLIISPGPGTPEKRE   62 (195)
T ss_dssp             CEEEEEECSCSS-HHHHHHHHHHTT-CEEEEEETTTSC-------HHHHHHH----------CCSEEEECCCSSCTTSHH
T ss_pred             CEEEEEECCCCH-HHHHHHHHHHCC-CEEEEEECCCCC-------HHHHHHC----------CCCEEEECCCCCCCCCCC
T ss_conf             879999788717-999999999789-937998489899-------9999864----------999799899999800022


Q ss_pred             HCCHHHHHHHHHHCCCEEE
Q ss_conf             0076999999974890488
Q gi|254780791|r  226 HFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       226 ~FN~e~laraI~~~~iPVi  244 (529)
                      ......+.+...+..+||+
T Consensus        63 ~~~~~~~i~~~~~~~~PvL   81 (195)
T 1qdl_B           63 DIGVSLDVIKYLGKRTPIL   81 (195)
T ss_dssp             HHTTHHHHHHHHTTTSCEE
T ss_pred             CCCCCHHHHHHHCCCCCEE
T ss_conf             3336799999854799778


No 331
>>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopeptidase, ATP-dependent protease, hydrolase; 2.6A {Mycobacterium tuberculosis} (A:)
Probab=32.52  E-value=25  Score=13.64  Aligned_cols=109  Identities=17%  Similarity=0.093  Sum_probs=73.4

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH
Q ss_conf             98478425899999986305975899972100111103679999999974100357677758999516888444220076
Q gi|254780791|r  150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND  229 (529)
Q Consensus       150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~  229 (529)
                      ..|++.+.+.-|+...+-+.-    ++|..-.-+......+++.|..+......    +.=++.|-=+||+..     .-
T Consensus         8 ~~~~~~~~~~~~i~~~~~~~~----ii~~~~~i~~~~~~~~~~~l~~~~~~~~~----~~i~l~InSpGG~v~-----~~   74 (208)
T 2cby_A            8 RSNSQGLSLTDSVYERLLSER----IIFLGSEVNDEIANRLCAQILLLAAEDAS----KDISLYINSPGGSIS-----AG   74 (208)
T ss_dssp             -------CHHHHHHHHHHTTT----EEEECSCBCHHHHHHHHHHHHHHHHHCSS----SCEEEEEEECCBCHH-----HH
T ss_pred             CCCCCCCCCCCHHHHHHHCCC----EEEECCEECHHHHHHHHHHHHHHHCCCCC----CCEEEECCCCCCCHH-----HH
T ss_conf             347888666557989875378----89879868689999999999998664999----998986788878677-----89


Q ss_pred             HHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHCCCCCCCHHHH
Q ss_conf             99999997489048852057--7752589886412377721456
Q gi|254780791|r  230 EMIVRAIANSSIPIISAIGH--ETDWTLADYAADLRAPTPTGAA  271 (529)
Q Consensus       230 e~laraI~~~~iPVisgIGH--E~D~Tl~D~VAD~Ra~TPTaAA  271 (529)
                      ..++.+|-.++.||++-+.-  ----+++-..+|.+...|++=.
T Consensus        75 ~~i~~~i~~~~~~v~~~~~g~aaSa~~~i~~a~d~~~~~~~~~~  118 (208)
T 2cby_A           75 MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHA  118 (208)
T ss_dssp             HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTC
T ss_pred             HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             99999986305401453275424379999873798956887865


No 332
>>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} (A:242-511)
Probab=32.51  E-value=25  Score=13.64  Aligned_cols=41  Identities=20%  Similarity=0.291  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCC
Q ss_conf             79999999974100357677758999516888444220076999999974890
Q gi|254780791|r  189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSI  241 (529)
Q Consensus       189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~i  241 (529)
                      ++...++.+....       ++ .|++-||||..++|+    .+.-.|..+||
T Consensus       149 ~~~~~~e~l~~~~-------~~-~i~v~GGgs~s~~w~----q~~Advlg~~v  189 (270)
T 3hz6_A          149 SLRWCAELLGXEK-------VG-LLKVVGGGARSEAWL----RXIADNLNVSL  189 (270)
T ss_dssp             HHHHHHHHHTGGG-------CC-EEEEESGGGGCHHHH----HHHHHHHTCEE
T ss_pred             HHHHHHHHHHCCC-------CC-EEEEECCHHHCHHHH----HHHHHHHCCCE
T ss_conf             9999999960799-------88-799982555489999----99999868985


No 333
>>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A (A:1-125)
Probab=32.40  E-value=25  Score=13.62  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             89998478425899999986305975899
Q gi|254780791|r  147 IIAVITSPTGAVIRDILQRISCRFPLRVI  175 (529)
Q Consensus       147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~  175 (529)
                      |+-||+.|+|+|-..+.+.|.+++|..++
T Consensus         2 k~ivi~GpsgsGKt~la~~La~~~~~~ii   30 (125)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV   30 (125)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCEEE
T ss_conf             69999798864789999999998799399


No 334
>>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} (A:9-120,A:264-285)
Probab=32.31  E-value=25  Score=13.61  Aligned_cols=79  Identities=20%  Similarity=0.208  Sum_probs=45.5

Q ss_pred             CCCEEEEEEC-CCHHH--HHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             6528999847-84258--9999998630597--58999721001111036799999999741003576777589995168
Q gi|254780791|r  144 IPKIIAVITS-PTGAV--IRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       144 ~p~~i~vits-~~~a~--~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      .+-++++|-. .+.|.  |.-.......+.+  ++++-+|..+    ...++.++|+.+|...      .+|-|+|=+  
T Consensus        25 ~~PkLaiI~vg~d~aS~~Yv~~k~k~a~~lGI~~~~~~l~~~~----~~~el~~~I~kLN~D~------~V~GIlVq~--   92 (134)
T 3l07_A           25 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHT----TESELLELIDQLNNDS------SVHAILVQL--   92 (134)
T ss_dssp             CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTC----CHHHHHHHHHHHHTCT------TCCEEEECS--
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----CHHHHHHHHHHHHCCC------CCCEEEEEC--
T ss_conf             9972799995897567999999999999748858999789998----8999999999996467------867799606--


Q ss_pred             CCHHHHH-HCCHHHHHHHHHH
Q ss_conf             8844422-0076999999974
Q gi|254780791|r  219 GSIEDLW-HFNDEMIVRAIAN  238 (529)
Q Consensus       219 GS~eDL~-~FN~e~laraI~~  238 (529)
                          =|. .+|+..+..+|.-
T Consensus        93 ----PLP~~id~~~i~~~I~P  109 (134)
T 3l07_A           93 ----PLPAHINKNNVIYSIKP  109 (134)
T ss_dssp             ----SCCTTSCHHHHHHHSCG
T ss_pred             ----CCCCCCCHHHHHHCCCC
T ss_conf             ----76556106889860495


No 335
>>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} (A:172-238)
Probab=32.31  E-value=25  Score=13.61  Aligned_cols=16  Identities=25%  Similarity=0.727  Sum_probs=10.0

Q ss_pred             HCCCEEEEECCC-CCEE
Q ss_conf             314619998489-8895
Q gi|254780791|r  458 LKRGYTSIQDTN-NNFI  473 (529)
Q Consensus       458 L~RGYaiv~~~~-GkiI  473 (529)
                      --||||-|.+.+ |+++
T Consensus        23 ~GRGYAAVK~~~~g~v~   39 (67)
T 1c0m_A           23 WGRGYAAVKNRDTDKVI   39 (67)
T ss_dssp             ECSSEEEEEETTTCCEE
T ss_pred             EECCEEEEECCCCCCEE
T ss_conf             71624999748888258


No 336
>>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} (A:279-530)
Probab=32.13  E-value=25  Score=13.59  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=52.3

Q ss_pred             CEEEEEEECCCC----CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHCCHHHHHH---HHHHCC
Q ss_conf             758999721001----111036799999999741003576777589995168884---4422007699999---997489
Q gi|254780791|r  171 PLRVIIFPVKVQ----GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHFNDEMIVR---AIANSS  240 (529)
Q Consensus       171 p~~~~~~p~~vQ----G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~FN~e~lar---aI~~~~  240 (529)
                      |+-|+-....|+    |..+...+.++++.+++.+       .=+|.++=.+|..   ++.+.-.-...++   +.+++.
T Consensus        55 ~v~via~d~~~~gG~~~~~~~~K~~r~i~~a~~~~-------iPiv~l~dt~G~~~~~~~e~~~~~~~~~~~~~a~~~~~  127 (252)
T 1xny_A           55 PVGIVANQPMQFAGCLDITASEKAARFVRTCDAFN-------VPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT  127 (252)
T ss_dssp             EEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTT-------CCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCC
T ss_pred             EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC-------CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88897201333578756534899999999987558-------63899985344445579998628999999999997078


Q ss_pred             CEEEEEECCC------CCCHHHHHHHCCCCCCCHHH
Q ss_conf             0488520577------75258988641237772145
Q gi|254780791|r  241 IPIISAIGHE------TDWTLADYAADLRAPTPTGA  270 (529)
Q Consensus       241 iPVisgIGHE------~D~Tl~D~VAD~Ra~TPTaA  270 (529)
                      +|+|+-|-=.      -=.....+.+|....+|++-
T Consensus       128 vP~i~vi~g~~~gg~~~~~a~~~~~~d~~~a~~~a~  163 (252)
T 1xny_A          128 VPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQ  163 (252)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCE
T ss_pred             CCEEEEEECCCCCHHHHHCCCCCCCCCEEEECCCCE
T ss_conf             886999977753023431166667888799978787


No 337
>>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} (A:119-311)
Probab=32.00  E-value=25  Score=13.57  Aligned_cols=77  Identities=17%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH-HHCCCEEEEE--ECC
Q ss_conf             8999721001111036799999999741003576777589995168884442200769999999-7489048852--057
Q gi|254780791|r  173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI-ANSSIPIISA--IGH  249 (529)
Q Consensus       173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI-~~~~iPVisg--IGH  249 (529)
                      ..+||==.|  ++.+..|-+++..+....   ..+++..||++|=-+--++=+.+.-+.+.+.+ ....+||+.+  +||
T Consensus        95 g~ILfLEd~--~e~~~~idR~L~~L~~~G---~f~~~~gii~G~f~~~~~~~~~~~~~~il~~~~~~~~~Pv~~~~~~GH  169 (193)
T 1zl0_A           95 GSILVLEDV--GEPYYRLERSLWQLLESI---DARQLGAICLGSFTDCPRKEVAHSLERIFGEYAAAIEVPLYHHLPSGH  169 (193)
T ss_dssp             TCEEEEEEE--SCCHHHHHHHHHHHHHHT---TGGGCSEEEEEEEETCCCTTCSSCHHHHHHHHHHHTTCCEEECCSCSS
T ss_pred             CEEEEEECC--CCHHHHHHHHHHHHHHCC---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             829999706--861789999999998708---521376799961577997651240999999987428982897999989


Q ss_pred             CCCCH
Q ss_conf             77525
Q gi|254780791|r  250 ETDWT  254 (529)
Q Consensus       250 E~D~T  254 (529)
                      -.+..
T Consensus       170 ~~p~~  174 (193)
T 1zl0_A          170 GAQNR  174 (193)
T ss_dssp             SSCCC
T ss_pred             CCCCE
T ss_conf             99854


No 338
>>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} (A:)
Probab=31.89  E-value=25  Score=13.56  Aligned_cols=88  Identities=17%  Similarity=0.074  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE-----------------EECCCCCCCHHHHHHHHHHHHH
Q ss_conf             00163102652899984784258999999863059758999-----------------7210011110367999999997
Q gi|254780791|r  136 QHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVII-----------------FPVKVQGDECPKEIANAILQLN  198 (529)
Q Consensus       136 ~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~-----------------~p~~vQG~~a~~~i~~ai~~~~  198 (529)
                      .+..+...+--|++|||..++--=.-+.+.+.+.- .+|++                 +++-|-...+..+.   ++.+.
T Consensus         4 ~~~~~~~~l~gk~vlVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~Dv~~~~~~~~~---~~~~~   79 (249)
T 3f9i_A            4 HHHHHMIDLTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEE---CSNLI   79 (249)
T ss_dssp             -----CCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHH---HHHHH
T ss_pred             CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCCEEEECCCCCHHH---HHHHH
T ss_conf             56786776789989993878789999999999879-999999799999999999856683499878999999---99999


Q ss_pred             HHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH
Q ss_conf             4100357677758999516888444220076999
Q gi|254780791|r  199 TLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI  232 (529)
Q Consensus       199 ~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l  232 (529)
                      .     ....+|++|-.=|.+-..+++-.++|..
T Consensus        80 ~-----~~g~iD~lVnnAG~~~~~~~~~~~~e~~  108 (249)
T 3f9i_A           80 S-----KTSNLDILVCNAGITSDTLAIRMKDQDF  108 (249)
T ss_dssp             H-----TCSCCSEEEECCC-------------CH
T ss_pred             H-----HHCCCCEEEECCCCCCCCCHHHCCHHHH
T ss_conf             9-----7599989998997667788123999999


No 339
>>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (A:56-212)
Probab=31.74  E-value=23  Score=13.89  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=18.6

Q ss_pred             CCEEEEEECCCHHHHHHHH----HHHHHCCCEEEEEE
Q ss_conf             5289998478425899999----98630597589997
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDIL----QRISCRFPLRVIIF  177 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~----~~~~~r~p~~~~~~  177 (529)
                      |+-|.|+||...+.++|=+    +.++.+.+..|+..
T Consensus        89 p~~I~V~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v  125 (157)
T 1m1n_A           89 NKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPV  125 (157)
T ss_dssp             CCCEEEEECTHHHHHTCCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCEEEEECCCHHHHHCCCHHHHHHHHHHHHCCEEEEE
T ss_conf             9889997887688853699999999877539879999


No 340
>>3b6y_A Gamma-interferon-inducible protein IFI-16; transcription factor, OB-fold, structural genomics, PSI-2, protein structure initiative; 2.35A {Homo sapiens} (A:111-200)
Probab=31.48  E-value=25  Score=13.51  Aligned_cols=52  Identities=21%  Similarity=0.402  Sum_probs=32.8

Q ss_pred             EEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE
Q ss_conf             9999970543568886279998748947999997352105866814598899999
Q gi|254780791|r   36 CVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG   90 (529)
Q Consensus        36 ~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g   90 (529)
                      .|-|+-.=.+-.-..-+.||.++|+.++|..|.. +++.++.  =++||++-+.+
T Consensus        10 ~V~G~F~v~KK~v~~k~i~Y~I~D~TG~MeVvv~-G~~~ni~--CeeGDKLrL~c   61 (90)
T 3b6y_A           10 FVNGVFEVHKKNVRGEFTYYEIQDNTGKMEVVVH-GRLTTIN--CEEGDKLKLTC   61 (90)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEECSSCEEEEEEE-SGGGGSC--CCTTCEEEEEE
T ss_pred             EEEEEEEEEEEEECCCEEEEEEECCCCCEEEEEE-CEEEECC--CCCCCEEEEEE
T ss_conf             9968999999997267699998638873899995-6080014--68897489999


No 341
>>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} (A:9-123,A:273-301)
Probab=31.41  E-value=25  Score=13.50  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=46.5

Q ss_pred             CCCCEEEEEECCCHHH--HHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             2652899984784258--9999998630597--58999721001111036799999999741003576777589995168
Q gi|254780791|r  143 FIPKIIAVITSPTGAV--IRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       143 ~~p~~i~vits~~~a~--~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      ..|+=..|..+.+.|.  |.-......+..+  ++++-+|..+    ...++++.|+.+|...      .+|-|+|    
T Consensus        26 ~~P~LavIlvg~d~aS~~Yv~~k~k~a~~iGI~~~~~~l~~~~----se~ell~~I~~LN~D~------~V~GIlV----   91 (144)
T 1a4i_A           26 FTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTT----TESEVMKYITSLNEDS------TVHGFLV----   91 (144)
T ss_dssp             CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTC----CHHHHHHHHHHHHHCT------TCCEEEE----
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC----CHHHHHHHHHHHHCCC------CHHHHEE----
T ss_conf             9971799996998038999999999998665834998456420----0899999998761585------1421100----


Q ss_pred             CCHHHHHH---CCHHHHHHHHH
Q ss_conf             88444220---07699999997
Q gi|254780791|r  219 GSIEDLWH---FNDEMIVRAIA  237 (529)
Q Consensus       219 GS~eDL~~---FN~e~laraI~  237 (529)
                        .-=|..   +|+..+..+|.
T Consensus        92 --QlPLP~h~~id~~~i~~aI~  111 (144)
T 1a4i_A           92 --QLPLDSENSINTEEVINAIA  111 (144)
T ss_dssp             --CSSCCCSSCCCHHHHHHTSC
T ss_pred             --CCCCCCCCCHHHHHHHHCCC
T ss_conf             --16665544445788875259


No 342
>>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} (A:)
Probab=31.27  E-value=26  Score=13.48  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=21.8

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCC-CEEEE
Q ss_conf             899984784258999999863059-75899
Q gi|254780791|r  147 IIAVITSPTGAVIRDILQRISCRF-PLRVI  175 (529)
Q Consensus       147 ~i~vits~~~a~~~D~~~~~~~r~-p~~~~  175 (529)
                      ||+++.|.+++++.+++..+.... +.++.
T Consensus         2 kI~~~gs~~~~~l~~ll~~~~~~~~~~~i~   31 (212)
T 1jkx_A            2 NIVVLISGNGSNLQAIIDACKTNKIKGTVR   31 (212)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHTTSSSSEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHCCCCCCEEE
T ss_conf             799998268478999999887099998899


No 343
>>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens} (A:116-190)
Probab=31.21  E-value=26  Score=13.47  Aligned_cols=48  Identities=23%  Similarity=0.231  Sum_probs=33.2

Q ss_pred             HHHHCCHHHHHCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEECCCCCC
Q ss_conf             88716967773146199984898895777892999869999911099999950578887
Q gi|254780791|r  448 ILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKAPPKE  506 (529)
Q Consensus       448 ~L~slsP~~~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~k~~~~~  506 (529)
                      -++..+|+.+|++-           +++-..|..||.|.|.+.+-.-.-.|.+..|...
T Consensus        14 F~~i~npkavLE~~-----------Lr~ystLT~Gd~i~i~~~~~~y~l~V~e~kP~~a   61 (75)
T 2yuj_A           14 FLDITNPKAVLENA-----------LRNFACLTTGDVIAINYNEKIYELRVMETKPDKA   61 (75)
T ss_dssp             HHHSSCHHHHHHHH-----------HTTCCEECTTCEEEEESSSCEEEEEEEEESSSSS
T ss_pred             CCCCCCHHHHHHHH-----------HHCCCEEECCCEEEEEECCEEEEEEEEEECCCCE
T ss_conf             53566489999999-----------7478000149999997599999999999778883


No 344
>>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (b:)
Probab=31.06  E-value=26  Score=13.45  Aligned_cols=44  Identities=14%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             77758999516888444220076999999974890488520577752589886
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      ..+|+|+|.         .+-.|...++.-..+.||||+=+-...|.+.+||+
T Consensus       117 ~~P~~iiv~---------dp~~~~~ai~Ea~~l~IPvIai~DTn~~p~~idy~  160 (295)
T 2zkq_b          117 REPRLLVVT---------DPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA  160 (295)
T ss_dssp             CCCSEEEES---------CTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEE
T ss_pred             CCCCEEEEE---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
T ss_conf             367702776---------66631588999875499989980378986457767


No 345
>>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316)
Probab=31.03  E-value=26  Score=13.45  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=28.8

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             26528999847842589999998630597589997
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIF  177 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~  177 (529)
                      .-..+|-+|++|+|+|-..+.+.|.+++|..++..
T Consensus         7 ~~~~~iI~I~GpSGsGKttla~~La~~~~~~~i~~   41 (232)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISV   41 (232)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             88995699989883279999999999869979960


No 346
>>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:117-211)
Probab=31.00  E-value=26  Score=13.44  Aligned_cols=89  Identities=17%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             5289998478425899999986305975899972------1001111036799999999741003576777589995168
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP------VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p------~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      .+||||+|+=.-..-+-+..-+... +++|.-+-      ..--|.-.+.+|..++..+...     .+..|+|++.-.+
T Consensus         1 vkriai~TPY~~~v~~~~~~~~~~~-G~eV~~~~~l~~~~~~~ia~i~~~~i~~~~~~~~~d-----~p~adai~isCTn   74 (95)
T 3ixl_A            1 VRRVALATAYIDDVNERLAAFLAEE-SLVPTGXRSLGITGVEAMARVDTATLVDLCVRAFEA-----APDSDGILLSSGG   74 (95)
T ss_dssp             CSEEEEEESSCHHHHHHHHHHHHHT-TCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHT-----STTCSEEEEECTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHC-CCEECCEEECCCCCCHHHCCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCC
T ss_conf             9748997088689879999999987-973303110278852654037999999999999741-----8998789984788


Q ss_pred             CCHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             8844422007699999997489048852
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                           |..++  -+.+.=....+||||.
T Consensus        75 -----lrt~~--~i~~lE~~lG~PVisS   95 (95)
T 3ixl_A           75 -----LLTLD--AIPEVERRLGVPVVSS   95 (95)
T ss_dssp             -----SCCTT--HHHHHHHHHSSCEEEH
T ss_pred             -----CCHHH--HHHHHHHHHCCCEEEH
T ss_conf             -----53788--9999999989889866


No 347
>>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:122-254,A:330-346)
Probab=30.69  E-value=26  Score=13.40  Aligned_cols=87  Identities=13%  Similarity=0.080  Sum_probs=47.6

Q ss_pred             CCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             52899984784258--9999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  145 PKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       145 p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      .++|+||++.+.-+  ..+.++..-+...++|.-....=.|..--.+++..|...          ++|+||++=.+.   
T Consensus        17 ~k~vaii~~d~~~G~~~~~~~~~~l~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~----------~~d~Ii~~~~~~---   83 (150)
T 1usg_A           17 PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKE----------NIDFVYYGGYYP---   83 (150)
T ss_dssp             CSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHT----------TCCEEEEESCHH---
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHC----------CCCEEEEEECCH---
T ss_conf             5203674165201256787765544134422788873362111013688888753----------874699974443---


Q ss_pred             HHHHCCHHHHHHHHHHC--CCEEEEEECC
Q ss_conf             42200769999999748--9048852057
Q gi|254780791|r  223 DLWHFNDEMIVRAIANS--SIPIISAIGH  249 (529)
Q Consensus       223 DL~~FN~e~laraI~~~--~iPVisgIGH  249 (529)
                           .--.+.++..+.  +.|++..-|=
T Consensus        84 -----~~~~~~~~~~~~g~~~~~~~~~~~  107 (150)
T 1usg_A           84 -----EMGQMLRQARSVGLKTQFMGPEGV  107 (150)
T ss_dssp             -----HHHHHHHHHHHTTCCCEEEECGGG
T ss_pred             -----HHHHEEEECCCCCCCCEEEEEEEC
T ss_conf             -----443214101223556303310001


No 348
>>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391)
Probab=30.29  E-value=26  Score=13.35  Aligned_cols=107  Identities=13%  Similarity=-0.014  Sum_probs=59.7

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             6528999847842589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -.++|+||.+.+++-=+++...+.+   ..+.+|...-..-.|...-...+..|+....        ++|+|+++=   +
T Consensus        19 g~kkvavi~~dd~~yG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~~d~~~~v~~lk~~~a--------~pdaVil~~---~   87 (181)
T 3eaf_A           19 GQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAA--------DPDYVWCGN---T   87 (181)
T ss_dssp             CSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTT--------CCSEEEECS---C
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC--------CCCEEEEEC---C
T ss_conf             36738999814783047899999999975367500466214311222202444444325--------642699952---5


Q ss_pred             HHHHHHCCHHHHHHHHHH--CCCEEEEEECCCCCCHHH---HHHHCCCCCC
Q ss_conf             444220076999999974--890488520577752589---8864123777
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIAN--SSIPIISAIGHETDWTLA---DYAADLRAPT  266 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~--~~iPVisgIGHE~D~Tl~---D~VAD~Ra~T  266 (529)
                      -.|.     -.++|+..+  .+.|++.+-|=-.+..+.   +.+..+-..+
T Consensus        88 ~~~~-----~~~ikq~~~~g~~~~ii~~~~~~~~~~l~~~g~~~eG~~~~~  133 (181)
T 3eaf_A           88 ISSC-----SLLGRAXAKVGLDAFLLTNVWGFDERSPQLIGEGGYGKVFGI  133 (181)
T ss_dssp             HHHH-----HHHHHHHHHHTCCCEEEECGGGCSTTHHHHHCGGGTTSEEEE
T ss_pred             CHHH-----HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
T ss_conf             5267-----899999997399852787414688999997678636809998


No 349
>>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} (A:115-206)
Probab=30.11  E-value=27  Score=13.33  Aligned_cols=38  Identities=18%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE
Q ss_conf             86279998748947999997352105866814598899999
Q gi|254780791|r   50 SGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG   90 (529)
Q Consensus        50 sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g   90 (529)
                      .-+.||+++|+.++|..|.. +++.++  .=++||++-+.+
T Consensus        28 ~k~~~YeI~D~TG~MeVvv~-g~~~ni--~CeeGDKLrL~c   65 (92)
T 2oq0_A           28 QKTTIYEIQDDRGKXDVVGT-GQCHNI--PCEEGDKLQLFC   65 (92)
T ss_dssp             SSEEEEEEEETTEEEEEEEE-GGGSSC--CCCTTCEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEE-CCEEEC--CCCCCCEEEEEE
T ss_conf             67489998538863899995-617001--468897489999


No 350
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:1-109,A:240-289)
Probab=29.98  E-value=27  Score=13.31  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             28999847842589999998630---597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      ..||||++.+..-+.++++-+.+   ..++.++++++---.     ...+.++.+...       ++|.||+.-..=..+
T Consensus        13 ~~IGVI~~l~npF~~eii~gI~~~a~~~GY~lli~~~~~~e-----~e~~~l~~l~~~-------~VDGIIl~~~~~~~~   80 (159)
T 3k9c_A           13 RLLGVVFELQQPFHGDLVEQIYAAATRRGYDVXLSAVAPSR-----AEKVAVQALXRE-------RCEAAILLGTRFDTD   80 (159)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTB-----CHHHHHHHHTTT-------TEEEEEEETCCCCHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-----HHHHHHHHHHHC-------CCCEEEEECCCHHHH
T ss_conf             98999953787699999999999999869989999489888-----999999999970-------975121102301588


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             4220076999999974890488520577752589886
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                              .+  ....-.+|+|. |+...+..-.|+|
T Consensus        81 --------~~--~ll~~~iPvVl-Id~~~~~~~~~~V  106 (159)
T 3k9c_A           81 --------EL--GALADRVPALV-VARASGLPGVGAV  106 (159)
T ss_dssp             --------HH--HHHHTTSCEEE-ESSCCSSTTSEEE
T ss_pred             --------HH--HHHHCCCCEEE-ECCCCCCCCCCCC
T ss_conf             --------99--87544477586-3244675556644


No 351
>>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling; 2.56A {Escherichia coli} (A:1-7,A:120-261)
Probab=29.86  E-value=27  Score=13.30  Aligned_cols=88  Identities=14%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             HCCCCCCCCCCCCCCCEEEEEEC-CC-HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             12261001631026528999847-84-25899999986305975899972100111103679999999974100357677
Q gi|254780791|r  131 GLFSDQHKNPIPFIPKIIAVITS-PT-GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPR  208 (529)
Q Consensus       131 Glfd~~~k~~lP~~p~~i~vits-~~-~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~  208 (529)
                      +....-+..-++.-=+++.||-- .. |..+...++.    ....+.+++....      .+-+++.+            
T Consensus        33 av~~ll~~~~~~l~Gk~vvViGrs~~vG~pla~lL~~----~gatVt~~~~~t~------~l~e~~~~------------   90 (149)
T 1b0a_A           33 GIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL----AGCTTTVTHRFTK------NLRHHVEN------------   90 (149)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT----TTCEEEEECSSCS------CHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHC----CCCCCCCCCCCCC------CHHHHHCC------------
T ss_conf             8999999851001003168843664200777765430----2344233322453------01223010------------


Q ss_pred             CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             7589995168884442200769999999748904885205777
Q gi|254780791|r  209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHET  251 (529)
Q Consensus       209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~  251 (529)
                      -|+||.+=|.-.+-+.-++.+.           .++--|||..
T Consensus        91 ADIVVsA~G~~~~i~~~~ik~g-----------avViDvG~~~  122 (149)
T 1b0a_A           91 ADLLIVAVGKPGFIPGDWIKEG-----------AIVIDVGINR  122 (149)
T ss_dssp             CSEEEECSCCTTCBCTTTSCTT-----------CEEEECCCEE
T ss_pred             HHHHHHHCCCCCCCCCCCCCCC-----------CEEEEECCEE
T ss_conf             2455442057775540222678-----------7899803606


No 352
>>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase- like superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} (A:1-16,A:87-200)
Probab=29.82  E-value=27  Score=13.29  Aligned_cols=52  Identities=2%  Similarity=-0.135  Sum_probs=28.6

Q ss_pred             CEEEEEECCCHHHHHHHHHHHH--HCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             2899984784258999999863--0597589997210011110367999999997
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRIS--CRFPLRVIIFPVKVQGDECPKEIANAILQLN  198 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~--~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~  198 (529)
                      -+++|+|+.+...+..++..+.  +.|. .++.....-..+-.+.-+..+++..+
T Consensus        32 ~~~~i~Sn~~~~~~~~~l~~~gl~~~fd-~i~~~~~~~~~Kp~p~~~~~~~~~~g   85 (130)
T 3cnh_A           32 YRXYSLNNEGRDLNEYRIRTFGLGEFLL-AFFTSSALGVXKPNPAXYRLGLTLAQ   85 (130)
T ss_dssp             SEEEEEECCCHHHHHHHHHHHTGGGTCS-CEEEHHHHSCCTTCHHHHHHHHHHHT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             3699983450788999998750122222-11112233456617888999999819


No 353
>>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:585-763)
Probab=29.65  E-value=27  Score=13.27  Aligned_cols=92  Identities=15%  Similarity=0.094  Sum_probs=51.2

Q ss_pred             HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC----CCEE
Q ss_conf             059758999721001111036799999999741003576777589995168884442200769999999748----9048
Q gi|254780791|r  168 CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANS----SIPI  243 (529)
Q Consensus       168 ~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~----~iPV  243 (529)
                      ++.+++++..++.|    .+++++.++..-          ++|+|.|.=--++ .|-+.-+-..+++.+-+.    .++|
T Consensus        47 ~~~G~~V~~LG~~~----p~e~l~~~~~~~----------~~diV~lS~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~v  111 (179)
T 3kp1_A           47 EKYGVEVHYLGTSV----PVEKLVDAAIEL----------KADAILASTIISH-DDIHYKNMKRIHELAVEKGIRDKIMI  111 (179)
T ss_dssp             GGGTCEEEECCSSB----CHHHHHHHHHHT----------TCSEEEEECCCCG-GGHHHHHHHHHHHHHHHTTCTTTSEE
T ss_pred             HHCCEEEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEHHHHH-HHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             54464899548658----989999999976----------9999997522132-44598889999999996288888699


Q ss_pred             EEEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             8520577752589886412377721456763
Q gi|254780791|r  244 ISAIGHETDWTLADYAADLRAPTPTGAAEMA  274 (529)
Q Consensus       244 isgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla  274 (529)
                      +-|.....-..+..+=+|.=+...+.+.+.+
T Consensus       112 ~~GG~~~~~~~~~~~G~d~~~~~~~~~~~~~  142 (179)
T 3kp1_A          112 GCGGTQVTPEVAVKQGVDAGFGRGSKGIHVA  142 (179)
T ss_dssp             EEECTTCCHHHHHTTTCSEEECTTCCHHHHH
T ss_pred             EECCCCCCHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf             9689877889999739560018989778999


No 354
>>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} (A:20-281)
Probab=29.57  E-value=27  Score=13.26  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=41.5

Q ss_pred             EECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH
Q ss_conf             84784258999999863059758999721001111036799999999741003576777589995168884442200769
Q gi|254780791|r  151 ITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE  230 (529)
Q Consensus       151 its~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e  230 (529)
                      +++.+-....+....+....+..+.++.+-+--+++..+.+..+...        ...+|++|-.-|++...+++...++
T Consensus        36 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~g~idilinnAg~~~~~~~~~~~~~  107 (262)
T 1w6u_A           36 IASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV--------AGHPNIVINNAAGNFISPTERLSPN  107 (262)
T ss_dssp             EEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH--------TCSCSEEEECCCCCCCSCGGGCCHH
T ss_pred             EEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCH
T ss_conf             99798889999999998851994899978889999999987557886--------2980698630234544543221200


Q ss_pred             HHHHHHH
Q ss_conf             9999997
Q gi|254780791|r  231 MIVRAIA  237 (529)
Q Consensus       231 ~laraI~  237 (529)
                      +.-+.+.
T Consensus       108 ~~~~~~~  114 (262)
T 1w6u_A          108 AWKTITD  114 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             5777766


No 355
>>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* (A:)
Probab=29.43  E-value=27  Score=13.24  Aligned_cols=103  Identities=15%  Similarity=0.042  Sum_probs=61.0

Q ss_pred             CCCCCCEEEEEECCCHHHHHHHH-----HHHHHCCCE--EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf             10265289998478425899999-----986305975--89997210011110367999999997410035767775899
Q gi|254780791|r  141 IPFIPKIIAVITSPTGAVIRDIL-----QRISCRFPL--RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII  213 (529)
Q Consensus       141 lP~~p~~i~vits~~~a~~~D~~-----~~~~~r~p~--~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii  213 (529)
                      +..-+.|||||.|.=-.-+-|=+     .++.+ +.+  .++-.|-..       ||--+++.+-+..+ ....+||.||
T Consensus         8 ~~~~~~riaIV~s~fn~~i~~~l~~ga~~~l~~-~g~~i~v~~VPGa~-------EiP~a~~~l~~~~~-~~~~~yDavi   78 (157)
T 2i0f_A            8 HEADAPHLLIVEARFYDDLADALLDGAKAALDE-AGATYDVVTVPGAL-------EIPATISFALDGAD-NGGTEYDGFV   78 (157)
T ss_dssp             ---CCCEEEEEEECSSHHHHHHHHHHHHHHHHH-TTCEEEEEEESSGG-------GHHHHHHHHHHHHH-TTCCCCSEEE
T ss_pred             CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHH-------HHHHHHHHHHHHHH-CCCCCCCEEE
T ss_conf             668999899997848789999999999999998-69958999804265-------57999999998624-0256666699


Q ss_pred             ----EECCCCCHHHHHHCC-HHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             ----951688844422007-699999997489048852057775
Q gi|254780791|r  214 ----LARGGGSIEDLWHFN-DEMIVRAIANSSIPIISAIGHETD  252 (529)
Q Consensus       214 ----i~RGGGS~eDL~~FN-~e~laraI~~~~iPVisgIGHE~D  252 (529)
                          |+||+=.--|..|=. ...|.+.=.+..+||+.||=+.-.
T Consensus        79 aLG~VIrGeT~H~e~v~~~v~~gl~~v~l~~~~PV~~gvLt~~~  122 (157)
T 2i0f_A           79 ALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVEN  122 (157)
T ss_dssp             EEEEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             88778724640577999999999999875259618988713798


No 356
>>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str} (A:1-43,A:144-241)
Probab=29.28  E-value=27  Score=13.22  Aligned_cols=36  Identities=11%  Similarity=0.255  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHCCHHHHHCCCEEEEECCCCCEECCHHHC
Q ss_conf             999999988716967773146199984898895777892
Q gi|254780791|r  441 SVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNL  479 (529)
Q Consensus       441 rL~~l~~~L~slsP~~~L~RGYaiv~~~~GkiI~s~~~l  479 (529)
                      -++.+.+.|..+.   .-+.||+.+.|.+|.+|-+...-
T Consensus        43 ~Ld~l~~~L~~i~---~g~~Gy~fIiD~dG~IIaHpd~~   78 (141)
T 3c8c_A           43 PLAELAELVNEVK---LFDAGYVFIVSEDGTTIAHPKKE   78 (141)
T ss_dssp             CHHHHHHHHTCSC---CTTSEEEEEEETTSBEEECSSGG
T ss_pred             CCHHHCCCCCCCC---CCCCEEEEEEECCCCEEECCCHH
T ss_conf             9001101121234---57644999995899599658858


No 357
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242)
Probab=28.85  E-value=28  Score=13.16  Aligned_cols=97  Identities=21%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             CCCEEEEEECCCHHHHHHHH----HHHHHCCC-EEEE-EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             65289998478425899999----98630597-5899-972100111103679999999974100357677758999516
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDIL----QRISCRFP-LRVI-IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~----~~~~~r~p-~~~~-~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      -..+|++|+.+....-.+-.    ..+++..| +.+. .+++...-+.+..    ++..+-...     +.+|+|     
T Consensus        18 g~~~i~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-----~~~~ai-----   83 (134)
T 3g1w_A           18 GEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRR----VAHQLLEDY-----PNLAGI-----   83 (134)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHH----HHHHHHHHC-----TTEEEE-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH----HHHHHHCCC-----CCCCEE-----
T ss_conf             576199993124312899999999999875776631457516653588999----999874038-----998889-----


Q ss_pred             CCCHHHHHHCCHH---HHHHHHHHCCCE-EEEEECCCCCCHHHHHHHC
Q ss_conf             8884442200769---999999748904-8852057775258988641
Q gi|254780791|r  218 GGSIEDLWHFNDE---MIVRAIANSSIP-IISAIGHETDWTLADYAAD  261 (529)
Q Consensus       218 GGS~eDL~~FN~e---~laraI~~~~iP-VisgIGHE~D~Tl~D~VAD  261 (529)
                             |++|+.   .+++++.+..+| =|+-||..-+....+++.+
T Consensus        84 -------~~~~~~~a~g~~~al~~~g~~~di~i~g~d~~~~~~~~i~~  124 (134)
T 3g1w_A           84 -------FATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDE  124 (134)
T ss_dssp             -------EESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHT
T ss_pred             -------EECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC
T ss_conf             -------97774899999999997699998399997896999999985


No 358
>>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} (A:)
Probab=28.85  E-value=28  Score=13.16  Aligned_cols=84  Identities=14%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             63102652899984784258999999863059758999721001111036799999999741003576777589995168
Q gi|254780791|r  139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      .+-|.-+.||+||--.++- .+.+.+.+.++. +.+.++|..-    .+.+                ...+|.|||.=|+
T Consensus         7 ~~~~~~~m~vliid~g~~~-~~~i~~~l~~~g-~~~~v~~~~~----~~~~----------------~~~~dgiii~GG~   64 (212)
T 2a9v_A            7 HHHHHHXLKIYVVDNGGQW-THREWRVLRELG-VDTKIVPNDI----DSSE----------------LDGLDGLVLSGGA   64 (212)
T ss_dssp             ---CCCCCBEEEEEESCCT-TCHHHHHHHHTT-CBCCEEETTS----CGGG----------------GTTCSEEEEEEEC
T ss_pred             CCCCCCCCEEEEEECCCCH-HHHHHHHHHHCC-CEEEEEECCC----CHHH----------------HHCCCEEEEECCC
T ss_conf             3250664579999997678-999999999789-8489996979----9999----------------8468907983576


Q ss_pred             CCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             884442200769999999748904885
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      ++..|-.. -.+.+.+.+....+||+-
T Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~PiLG   90 (212)
T 2a9v_A           65 PNIDEELD-KLGSVGKYIDDHNYPILG   90 (212)
T ss_dssp             SCGGGTGG-GHHHHHHHHHHCCSCEEE
T ss_pred             CCCCCCCC-HHHHHHHHHHHCCCEEEE
T ss_conf             55420332-124567776515832899


No 359
>>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A (A:1-212,A:297-323)
Probab=28.83  E-value=28  Score=13.16  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=27.7

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             52899984784258999999863059758999
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVII  176 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~  176 (529)
                      ..+|-||.+|||+|-..+...|..++|.+++.
T Consensus         4 ~~kiivI~GpTGsGKt~La~~La~~~~~~iis   35 (239)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELIS   35 (239)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             99589998978417999999999987997994


No 360
>>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} (A:)
Probab=28.82  E-value=28  Score=13.16  Aligned_cols=48  Identities=13%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             89999998630597-589997210011110367999999997410035767775899951688844
Q gi|254780791|r  158 VIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       158 ~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      .+..+...+++.++ ..++||.+..-|+..+.                 ...+|++|+..+.-+..
T Consensus         3 ~l~~i~~~~~~~~~~~~v~LFGS~ArG~~~~~-----------------~SDiDilVv~~~~~~~~   51 (96)
T 1ylq_A            3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIG-----------------LSDIDVAIVSDVFEDRN   51 (96)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSC-----------------CCSEEEEEECGGGGSHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCEECCCCCCC-----------------CCCCEEEEEECCCCCHH
T ss_conf             89999999998689958999961883798789-----------------88427999977888878


No 361
>>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} (A:)
Probab=28.80  E-value=28  Score=13.16  Aligned_cols=90  Identities=20%  Similarity=0.184  Sum_probs=54.0

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHH-HHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             65289998478425899999986-305-9758999721001111036799999999741003576777589995168884
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRI-SCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~-~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      -+.+|-||-.  ....+.+++.. ... +.+.+....          +-..|++.+...       .||+||+-      
T Consensus         7 ~~~~vLiVDD--~~~~~~~l~~~L~~~~~~~~v~~a~----------~~~~al~~l~~~-------~pdliilD------   61 (143)
T 3cnb_A            7 NDFSILIIED--DKEFADMLTQFLENLFPYAKIKIAY----------NPFDAGDLLHTV-------KPDVVMLD------   61 (143)
T ss_dssp             --CEEEEECS--CHHHHHHHHHHHHHHCTTCEEEEEC----------SHHHHHHHHHHT-------CCSEEEEE------
T ss_pred             CCCEEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC----------CHHHHHHHHHHC-------CCCEEEEE------
T ss_conf             9998999959--9999999999998478981999989----------999999999845-------89899982------


Q ss_pred             HHHHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHHHH
Q ss_conf             44220076999999974----89048852057775258988
Q gi|254780791|r  222 EDLWHFNDEMIVRAIAN----SSIPIISAIGHETDWTLADY  258 (529)
Q Consensus       222 eDL~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~D~  258 (529)
                      -+|=-.|-.++++.|.+    +.+|||-=.|+..+......
T Consensus        62 ~~mp~~dG~~l~~~ir~~~~~~~~pvI~lt~~~~~~~~~~~  102 (143)
T 3cnb_A           62 LMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRI  102 (143)
T ss_dssp             TTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf             36689808999999985677899879997068999999999


No 362
>>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} (A:)
Probab=28.76  E-value=28  Score=13.15  Aligned_cols=110  Identities=16%  Similarity=0.104  Sum_probs=61.3

Q ss_pred             CCCCEEEEEECCCHHH-----HHHHHHHHHHC--CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE-
Q ss_conf             2652899984784258-----99999986305--97-589997210011110367999999997410035767775899-
Q gi|254780791|r  143 FIPKIIAVITSPTGAV-----IRDILQRISCR--FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII-  213 (529)
Q Consensus       143 ~~p~~i~vits~~~a~-----~~D~~~~~~~r--~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii-  213 (529)
                      .-+.|||||.|.=-.-     +...+..+.++  .+ -.|.++.++  |   +-||--+++++-+.+      +||.|| 
T Consensus        15 ~~~~riaIV~s~fn~~i~~~l~~ga~~~l~~~~~~~~~~i~~~~VP--G---a~EiP~a~~~l~~~~------~~DaiIa   83 (159)
T 1kz1_A           15 GPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVP--G---SWELPQGIRASIARN------TYDAVIG   83 (159)
T ss_dssp             CTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECS--S---GGGHHHHHHHHHHHS------CCSEEEE
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECC--C---HHHHHHHHHHHHCCC------CCCEEEE
T ss_conf             8899899997218789999999999999999669995345899859--6---889999999986037------8786999


Q ss_pred             ---EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf             ---95168884442200-7699999997489048852057775258988641237772
Q gi|254780791|r  214 ---LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP  267 (529)
Q Consensus       214 ---i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP  267 (529)
                         |+||+=.--|..|= =...|.+.=....+||+.||=    ++-.+.=|.-|+-+-
T Consensus        84 LG~VIrGeT~H~~~i~~~vs~gl~~v~l~~~~PV~~Gil----T~~~~eQA~~R~~~~  137 (159)
T 1kz1_A           84 IGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLL----TVLNEEQALYRAGLN  137 (159)
T ss_dssp             EEEEECCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEE----EESSHHHHHHHBTCT
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHHHHHCCCC
T ss_conf             888853888278999999999999998444998799863----779999999880786


No 363
>>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} (A:)
Probab=28.62  E-value=28  Score=13.13  Aligned_cols=98  Identities=14%  Similarity=0.052  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEE-CCCCCHHHHHHCCHHHHHHH
Q ss_conf             89999998630597589997210011110367999999997410035767775-89995-16888444220076999999
Q gi|254780791|r  158 VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPD-IIILA-RGGGSIEDLWHFNDEMIVRA  235 (529)
Q Consensus       158 ~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D-~iii~-RGGGS~eDL~~FN~e~lara  235 (529)
                      ++=||..++.....    +|....-+......++..|..+.....      .+ +++.+ =.||+..     .-..+..+
T Consensus        71 avi~i~g~i~~~~~----~~~~~~~~~~~~~~i~~~l~~~~~~~~------~~~I~l~InSpGG~v~-----~~~~i~~~  135 (277)
T 1tg6_A           71 RAYDIYSRLLRERI----VCVMGPIDDSVASLVIAQLLFLQSESN------KKPIHMYINSPGGVVT-----AGLAIYDT  135 (277)
T ss_dssp             --CBHHHHHHTTTE----EEEESSBCHHHHHHHHHHHHHHHHHCS------SSCEEEEEEECCBCHH-----HHHHHHHH
T ss_pred             EEHHHHHHHHCCCE----EEECCEECHHHHHHHHHHHHHHHCCCC------CCCEEEEECCCCCCHH-----HHHHHHHH
T ss_conf             20127678762788----988988868999999999999864598------7627999569998475-----79999999


Q ss_pred             HHHCCCEEEEEECCC--CCCHHHHHHHCCCCCCCHHH
Q ss_conf             974890488520577--75258988641237772145
Q gi|254780791|r  236 IANSSIPIISAIGHE--TDWTLADYAADLRAPTPTGA  270 (529)
Q Consensus       236 I~~~~iPVisgIGHE--~D~Tl~D~VAD~Ra~TPTaA  270 (529)
                      |..++.||++-|...  ---+++=.++|.+..+|++-
T Consensus       136 i~~~~~pv~~~~~g~aaS~g~~ia~a~d~~~~~~~~~  172 (277)
T 1tg6_A          136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN  172 (277)
T ss_dssp             HHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT
T ss_pred             HHHCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9727898508998350687899998066687743876


No 364
>>2o2z_A Hypothetical protein; NP_244435.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A (A:)
Probab=28.42  E-value=28  Score=13.10  Aligned_cols=106  Identities=20%  Similarity=0.144  Sum_probs=67.1

Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf             6310265289998478425899999986305975-899972100111103679999999974100357677758999516
Q gi|254780791|r  139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG  217 (529)
Q Consensus       139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG  217 (529)
                      .|.-.-|-.+.+.|..+.-..+.. .+-....|+ ++.+.|..+   .|....++||+.            -|+||++=|
T Consensus       124 lP~t~~~~~l~a~~~dG~~~~ge~-~I~~~~~~I~rv~~~~~~~---~a~p~al~AI~~------------AD~IV~gPG  187 (323)
T 2o2z_A          124 LPASNRSIILHGEXEDGTIVTGES-SIPKAGKKIKRVFLTPKDT---KPLREGLEAIRK------------ADVIVIGPG  187 (323)
T ss_dssp             EESCSSCCEEEEEETTSCEEESTT-TGGGGCSCEEEEEEESTTC---CCCHHHHHHHHH------------CSEEEECSS
T ss_pred             EECCCCCEEEEEEECCCCCCCCEE-HHHCCCCCEEEEECCCCCC---CCCHHHHHHHHH------------CCCEEECCC
T ss_conf             956898469999978997347612-2331666417885246667---799789999981------------893798475


Q ss_pred             CCCHHHHHHCCHHHHHHHHHHCCCEE--EEEECC---C-CCCHHHHHHH
Q ss_conf             88844422007699999997489048--852057---7-7525898864
Q gi|254780791|r  218 GGSIEDLWHFNDEMIVRAIANSSIPI--ISAIGH---E-TDWTLADYAA  260 (529)
Q Consensus       218 GGS~eDL~~FN~e~laraI~~~~iPV--isgIGH---E-~D~Tl~D~VA  260 (529)
                      -==..=+=.+-=..++.||.+++-|+  |+=|+-   | ..+|.+|+|.
T Consensus       188 SlyTSIiP~Llv~gI~eAI~~s~a~kV~V~Nl~tq~GET~g~t~~d~V~  236 (323)
T 2o2z_A          188 SLYTSVLPNLLVPGICEAIKQSTARKVYICNVXTQNGETDGYTASDHLQ  236 (323)
T ss_dssp             CTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCHHHHHH
T ss_conf             2787751461218799998637997799966888854441767799999


No 365
>>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} (A:1-257)
Probab=28.29  E-value=28  Score=13.09  Aligned_cols=86  Identities=16%  Similarity=0.053  Sum_probs=42.3

Q ss_pred             CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-----------------------EEEEEEECCCCCCCHHHHHHHH
Q ss_conf             01631026528999847842589999998630597-----------------------5899972100111103679999
Q gi|254780791|r  137 HKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-----------------------LRVIIFPVKVQGDECPKEIANA  193 (529)
Q Consensus       137 ~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-----------------------~~~~~~p~~vQG~~a~~~i~~a  193 (529)
                      ..++.+.+-.|++|||..++--=.-+.+.+.+.-.                       ..+..+.+-|--.+...+.+..
T Consensus        22 ~~~~~~~l~gk~~lITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  101 (257)
T 1yb1_A           22 MPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKK  101 (257)
T ss_dssp             ---CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf             99999999998899928766999999999998799899998999999999999884299489999517998999999999


Q ss_pred             HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH
Q ss_conf             9999741003576777589995168884442200769
Q gi|254780791|r  194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE  230 (529)
Q Consensus       194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e  230 (529)
                      +...        ...+|++|..=|++...++..+.++
T Consensus       102 ~~~~--------~g~~d~lv~nag~~~~~~~~~~~~~  130 (257)
T 1yb1_A          102 VKAE--------IGDVSILVNNAGVVYTSDLFATQDP  130 (257)
T ss_dssp             HHHH--------TCCCSEEEECCCCCCCCCCGGGHHH
T ss_pred             HHHH--------CCCCCEEEEECCCCCCCCCCCCCHH
T ss_conf             9986--------4996189961444665433557568


No 366
>>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99)
Probab=28.08  E-value=29  Score=13.06  Aligned_cols=75  Identities=12%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHH
Q ss_conf             42589999998630597589997210011110367999999997410035767775899951688844422007699999
Q gi|254780791|r  155 TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVR  234 (529)
Q Consensus       155 ~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lar  234 (529)
                      +...+..++...-..+.+.+....          +..+|+..+...       .||+||+-.+          |-.++++
T Consensus         8 Dd~~~~~~i~~~L~~~g~~v~~a~----------~~~~a~~~~~~~-------~~dlviLp~~----------~G~~ll~   60 (99)
T 2hqr_A            8 KNSVLGGEIEKGLNVKGFMADVTE----------SLEDGEYLMDIR-------NYDLVMVSDK----------NALSFVS   60 (99)
T ss_dssp             SCHHHHHHHHHHHGGGTCCEEEES----------SHHHHHHHHTTS-------CCSEEEECCT----------THHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCHHHCCCC----------CCCCCCC
T ss_conf             799999999999998799999989----------999999999736-------9861102223----------3211112


Q ss_pred             HHH--HCCCEEEEEECCCCCCHHH
Q ss_conf             997--4890488520577752589
Q gi|254780791|r  235 AIA--NSSIPIISAIGHETDWTLA  256 (529)
Q Consensus       235 aI~--~~~iPVisgIGHE~D~Tl~  256 (529)
                      .+=  ...+|||---||....+..
T Consensus        61 ~lr~~~~~~pvI~lt~~~~~~~~~   84 (99)
T 2hqr_A           61 RIKEKHSSIVVLVSSDNPTSEEEV   84 (99)
T ss_dssp             HHHHHCTTSEEEEEESSCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             222222222221233211212222


No 367
>>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:1-143)
Probab=27.94  E-value=29  Score=13.04  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      .++|-||-.  -..+.+++..+-+.|++++....          +--.|+..+...       .||+||+      =-+|
T Consensus         4 ~~~ILiVDD--~~~~~~~i~~~l~~~g~~v~~a~----------~~~~al~~l~~~-------~~d~iil------D~~l   58 (143)
T 1yio_A            4 KPTVFVVDD--DMSVREGLRNLLRSAGFEVETFD----------CASTFLEHRRPE-------QHGCLVL------DMRM   58 (143)
T ss_dssp             CCEEEEECS--CHHHHHHHHHHHHTTTCEEEEES----------SHHHHHHHCCTT-------SCEEEEE------ESCC
T ss_pred             CCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCEEEEE------ECCC
T ss_conf             997999969--99999999999997799999978----------999999998845-------9869997------2454


Q ss_pred             HHCCHHHHHHHHHHC--CCEEE--EEECCCCC
Q ss_conf             200769999999748--90488--52057775
Q gi|254780791|r  225 WHFNDEMIVRAIANS--SIPII--SAIGHETD  252 (529)
Q Consensus       225 ~~FN~e~laraI~~~--~iPVi--sgIGHE~D  252 (529)
                      -.+|-.++++.|.+.  .+|||  ||-|-+.+
T Consensus        59 p~~~G~el~~~ir~~~~~~pvI~~t~~~~~~~   90 (143)
T 1yio_A           59 PGMSGIELQEQLTAISDGIPIVFITAHGDIPM   90 (143)
T ss_dssp             SSSCHHHHHHHHHHTTCCCCEEEEESCTTSCC
T ss_pred             CCCCCCCCHHHHHHHHCCCCEEEEEEECCHHH
T ss_conf             68788530057788733573799986287999


No 368
>>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236)
Probab=27.89  E-value=29  Score=13.03  Aligned_cols=41  Identities=20%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHH
Q ss_conf             8425899999986305975899972100-1111036799999
Q gi|254780791|r  154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAI  194 (529)
Q Consensus       154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai  194 (529)
                      ++-..+-++.+.+.+.-++.+++|..+. -|.....+....+
T Consensus       109 ~~~~~i~~~~~~ia~a~~~piiiy~~P~~~g~~~~~~~l~~l  150 (236)
T 2vc6_A          109 PTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARI  150 (236)
T ss_dssp             CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf             999999999998601456438999502233543539999987


No 369
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355)
Probab=27.87  E-value=29  Score=13.03  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCC-CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf             999999976540122610016310265-28999847-842589999998630---5975899972100111103679999
Q gi|254780791|r  119 ALEKRKKKLLEEGLFSDQHKNPIPFIP-KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANA  193 (529)
Q Consensus       119 ~~e~lk~~L~~eGlfd~~~k~~lP~~p-~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~a  193 (529)
                      ..++..+-.++-||.-....+.+..-. ..||++.+ .+..-+.+++.-+.+   ..++.+.++.+.-    .+..-..+
T Consensus        43 Tr~rVl~aA~elGY~pn~~a~~l~~~~s~~i~~i~~~~~~~f~~~ii~gi~~~a~~~G~~v~i~~~~~----d~e~e~~~  118 (221)
T 3e3m_A           43 TRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAY----SPEREEQL  118 (221)
T ss_dssp             ----------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTT----CHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCC----CCHHHHHH
T ss_conf             99999999999699538878876228774588735765555210100024555541387421232345----53014689


Q ss_pred             HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             999974100357677758999516888444220076999999974890488520
Q gi|254780791|r  194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI  247 (529)
                      ++.+...       .+|.||+.=..         .+...++...+..||||.-=
T Consensus       119 l~~l~~~-------~vdGIIi~~~~---------~~~~~i~~L~~~gIPvV~id  156 (221)
T 3e3m_A          119 VETMLRR-------RPEAMVLSYDG---------HTEQTIRLLQRASIPIVEIW  156 (221)
T ss_dssp             HHHHHHT-------CCSEEEEECSC---------CCHHHHHHHHHCCSCEEEES
T ss_pred             HHHHHHH-------CCCCCCCCCCC---------CCHHHHHHHHHCCCCCEEEC
T ss_conf             9999852-------23322223465---------41346677653158740322


No 370
>>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364)
Probab=27.82  E-value=29  Score=13.02  Aligned_cols=98  Identities=9%  Similarity=-0.001  Sum_probs=51.8

Q ss_pred             CCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             2652899984784258--99999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  143 FIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       143 ~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      .-.++|++|.+.+.-+  ..|..+..-++...++.-.-..-.|......++..|+..          ++|+|+++=-|. 
T Consensus        17 ~g~~~Vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~----------~pdvIv~~~~~~-   85 (162)
T 3lop_A           17 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAXASYPRNTANVGPAVDKLLAA----------DVQAIFLGATAE-   85 (162)
T ss_dssp             TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHS----------CCSEEEEESCHH-
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHC----------CCCEEEEECCHH-
T ss_conf             199889999836832699999999999976988999998379885368999999857----------989999968789-


Q ss_pred             HHHHHHCCHHHHHHHHHHCC--CEEEEEECCCCCCHHHHH
Q ss_conf             44422007699999997489--048852057775258988
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSS--IPIISAIGHETDWTLADY  258 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~--iPVisgIGHE~D~Tl~D~  258 (529)
                        |     -..+.++..+..  -|++..-|--.+..+-..
T Consensus        86 --~-----~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~  118 (162)
T 3lop_A           86 --P-----AAQFVRQYRARGGEAQLLGLSSIDPGILQKVA  118 (162)
T ss_dssp             --H-----HHHHHHHHHHTTCCCEEEECTTSCHHHHHHHH
T ss_pred             --H-----HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
T ss_conf             --9-----99999999983899769997578869999874


No 371
>>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} (A:1-164)
Probab=27.80  E-value=21  Score=14.18  Aligned_cols=25  Identities=8%  Similarity=-0.073  Sum_probs=10.5

Q ss_pred             CCCCEECCHHHCCCCCEEEEEEECE
Q ss_conf             8988957778929998699999110
Q gi|254780791|r  468 TNNNFITQKRNLATKTRILINFFDG  492 (529)
Q Consensus       468 ~~GkiI~s~~~l~~gd~i~i~l~DG  492 (529)
                      .+|.+++...-+...+.+.++|.||
T Consensus        39 ~~G~ilT~~Hvv~~~~~i~v~~~~g   63 (164)
T 3fan_A           39 GKIKCVTAAHVLTGNSARVSGVGFN   63 (164)
T ss_dssp             TEEEEEEEGGGSBTTEEEEEETTEE
T ss_pred             CCEEEEECHHHHCCCCEEEEEECCC
T ss_conf             9808997037228897799991699


No 372
>>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} (A:1-109)
Probab=27.64  E-value=29  Score=13.00  Aligned_cols=47  Identities=28%  Similarity=0.516  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH--HCCHHHHHHHHHH---CCCEEE--EEECCC
Q ss_conf             7999999997410035767775899951688844422--0076999999974---890488--520577
Q gi|254780791|r  189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW--HFNDEMIVRAIAN---SSIPII--SAIGHE  250 (529)
Q Consensus       189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~--~FN~e~laraI~~---~~iPVi--sgIGHE  250 (529)
                      +-.+|++.+...       .||+|++        |+.  ..|-.++++.+-+   .++|||  |+-|++
T Consensus        36 ~g~eal~~~~~~-------~~dlill--------D~~mP~~dG~e~~~~lr~~~~~~~~ii~lt~~~~~   89 (109)
T 1dz3_A           36 NGQDCLQMLEEK-------RPDILLL--------DIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQE   89 (109)
T ss_dssp             SHHHHHHHHHHH-------CCSEEEE--------ESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCH
T ss_pred             CHHHHHHHHHHC-------CCCEEEE--------ECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf             999999999826-------9999999--------55789998999999998469999959999764999


No 373
>>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:)
Probab=27.63  E-value=29  Score=13.00  Aligned_cols=78  Identities=17%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf             78425899999986305975899972100-11110367999999997410035767775899951688844422007699
Q gi|254780791|r  153 SPTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM  231 (529)
Q Consensus       153 s~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~  231 (529)
                      .++-.++-++...+.+..|+.+++|..+. -|-.=+.+.+..|..           .+.++-+--++|..+.        
T Consensus       109 ~~s~~~i~~~~~~ia~a~~~piiiYn~P~~~g~~~s~~~l~~l~~-----------~~~ivg~K~~~~~~~~--------  169 (291)
T 3bi8_A          109 KTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE-----------DKNIVAVKEASGNISQ--------  169 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTCCSCEEEEECHHHHSCCCCHHHHHHHTT-----------SSSEEEEEECSCCHHH--------
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHC-----------CCCEEEEEECCCCHHH--------
T ss_conf             899999999999998336998899978763587666566577760-----------8996566358899999--------


Q ss_pred             HHHHHHHCC--CEEEEEECC
Q ss_conf             999997489--048852057
Q gi|254780791|r  232 IVRAIANSS--IPIISAIGH  249 (529)
Q Consensus       232 laraI~~~~--iPVisgIGH  249 (529)
                      +.+.+..++  +-|++|.++
T Consensus       170 ~~~~~~~~~~~~~~~~g~d~  189 (291)
T 3bi8_A          170 IAQIKALCGDKLDIYSGNDD  189 (291)
T ss_dssp             HHHHHHHHGGGCEEEESCGG
T ss_pred             HHHHHHHCCCCEEEECCCHH
T ss_conf             99999974998378078378


No 374
>>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167)
Probab=27.54  E-value=29  Score=12.99  Aligned_cols=101  Identities=20%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCC---CEEEE-EEECCCCCCCHHHHHHHHHHHH------HHHCC--CCCCCCCC
Q ss_conf             2652899984784258999999863059---75899-9721001111036799999999------74100--35767775
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDILQRISCRF---PLRVI-IFPVKVQGDECPKEIANAILQL------NTLKE--GRTCPRPD  210 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~~~~~~r~---p~~~~-~~p~~vQG~~a~~~i~~ai~~~------~~~~~--~~~~~~~D  210 (529)
                      .-+.+|-+|+++-|+|---.+..+..++   ..++. +.|. .--..-...|...+..-      +...+  .....++|
T Consensus        25 ~~~~~l~~i~G~mgsGKTt~L~~~~~~~~~~~~kv~ii~p~-~d~r~~~~~I~s~~g~~~~a~~~~~~~~i~~~~~~~~d  103 (167)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-IDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMD  103 (167)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCCSSCC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCEE
T ss_conf             58837999990507889999999999999879909998041-66236886479058977267872265321001254200


Q ss_pred             EEEEECCCCCHHHHHHC---CHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             89995168884442200---76999999974890488520577752
Q gi|254780791|r  211 IIILARGGGSIEDLWHF---NDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       211 ~iii~RGGGS~eDL~~F---N~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                      +|+|        |=..|   +-.+.+|.+.+..+|||.+ |..+|+
T Consensus       104 vi~I--------DEaQFl~~~~ie~~~~l~~~~~~Vi~a-gL~~d~  140 (167)
T 2j9r_A          104 VIAI--------DEVQFFDGDIVEVVQVLANRGYRVIVA-GLDQDF  140 (167)
T ss_dssp             EEEE--------CCGGGSCTTHHHHHHHHHHTTCEEEEE-ECSBCT
T ss_pred             EEEE--------ECCCCCCHHHHHHHHHHHHCCCCEEEE-EEEEEE
T ss_conf             9998--------341114224899999998447744899-777204


No 375
>>3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A (A:1-125)
Probab=27.53  E-value=29  Score=12.98  Aligned_cols=50  Identities=20%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCEEEEEEEE-------EE-ECCCCEEEEEEEEEEECCC
Q ss_conf             799999735210586681459889999996-------67-5288437999997101680
Q gi|254780791|r   63 RIDAIIWKGTLNKIEFLPEEGIEFLVIGKI-------TT-FPGSSKYQIIIESLIPSGS  113 (529)
Q Consensus        63 ~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~-------~~-y~~~g~~ql~v~~i~~~g~  113 (529)
                      .|+-.+|.+..... .++-...+++..|.+       +| |.+.|+|++.|+-++..|-
T Consensus        43 ~VswnvWsG~~g~~-~~l~~ng~~V~tg~~t~~~~~a~~~~~~~G~y~~~V~lcn~~Gc  100 (125)
T 3b9e_A           43 KVKFNQWSGTSGDT-YNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGC  100 (125)
T ss_dssp             EEEEECCSSCCCSE-EEEEETTEEEEEEECCTTEEEEEEEECCCEEEEEEEEEECSSCE
T ss_pred             EEEEEEECCCCCCE-EEEEECCEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCC
T ss_conf             24774213888846-99998877887313367624898723789569999999879997


No 376
>>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} (A:1-8,A:121-263)
Probab=27.51  E-value=29  Score=12.98  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             CCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             16310265289998478--4258999999863059758999721001111036799999999741003576777589995
Q gi|254780791|r  138 KNPIPFIPKIIAVITSP--TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       138 k~~lP~~p~~i~vits~--~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      ..-+|.-=+++.||--.  =|..+.-.++.-.    ..+.+++..-      ..+.++++.            -|+||.+
T Consensus        42 ~~~~~l~Gk~vvViG~s~~VG~pla~lL~~~g----a~Vtv~~~~t------~~l~e~~~~------------ADIVVsA   99 (151)
T 3l07_A           42 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAK----ATVTTCHRFT------TDLKSHTTK------------ADILIVA   99 (151)
T ss_dssp             HTTCCCTTCEEEEECCCTTTHHHHHHHHHHTT----CEEEEECTTC------SSHHHHHTT------------CSEEEEC
T ss_pred             HHCCCCCCCEEEEECCCCCCCHHHHHHHHCCC----CEEEEEECCC------CCHHHHHHH------------CCHHHHH
T ss_conf             95998679779998898756558999985589----7499983589------998998650------------6766663


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             16888444220076999999974890488520577752
Q gi|254780791|r  216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                      =|.--+-+.-.+-+           =-++--|||..+.
T Consensus       100 tG~~~~i~~~~ik~-----------GaividvG~~~~~  126 (151)
T 3l07_A          100 VGKPNFITADMVKE-----------GAVVIDVGINHVD  126 (151)
T ss_dssp             CCCTTCBCGGGSCT-----------TCEEEECCCEEET
T ss_pred             CCCCCCCCCCCCCC-----------CCEEEEECCCCCC
T ss_conf             38977664333689-----------9789992562568


No 377
>>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} (A:258-504)
Probab=27.42  E-value=29  Score=12.97  Aligned_cols=136  Identities=14%  Similarity=0.082  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHCCCCCCC---CCCCCCCCEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf             9999997654012261001---631026528999847842589999998630---5975899972100111103679999
Q gi|254780791|r  120 LEKRKKKLLEEGLFSDQHK---NPIPFIPKIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANA  193 (529)
Q Consensus       120 ~e~lk~~L~~eGlfd~~~k---~~lP~~p~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~a  193 (529)
                      .++-++-|++.|+=+....   ..-...+..+-+++........++...++.   ..++++.+-+...      ......
T Consensus        81 ~~~A~~ll~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~------~~~~~~  154 (247)
T 1vr5_A           81 PEXAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWXVSIQSIAEDLVKVGINVEPKYPDY------SKYADD  154 (247)
T ss_dssp             HHHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECCCH------HHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH------HHHHHH
T ss_conf             79999989973986458776401477666421323688862678999999999764020033222211------244443


Q ss_pred             HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHH
Q ss_conf             999974100357677758999516888444220076999999974890488520577752589886412377721456
Q gi|254780791|r  194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAA  271 (529)
Q Consensus       194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAA  271 (529)
                         ...       .++|+.+.+-+|.+..|-+.|=.......-....-+.-.--|+-.|..+-.++...++.|-.+..
T Consensus       155 ---~~~-------g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~d~ll~~~~~~~d~~~r  222 (247)
T 1vr5_A          155 ---LYG-------GKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKI  222 (247)
T ss_dssp             ---HHH-------TCCSEEEECSSCBCCSCHHHHHHHHHCGGGGTSSSCSSSCTTCCCCHHHHHHHHHHHTCCCHHHH
T ss_pred             ---HHC-------CCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             ---321-------21013320555788887677765421654211367888765665989999999998715999999


No 378
>>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} (A:1-183,A:295-339)
Probab=27.32  E-value=29  Score=12.96  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             2652899984784258999999863059758999
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVII  176 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~  176 (529)
                      .-+.+|-||.+|+|+|-..+.+.|.++++.+++.
T Consensus        37 ~~~~~iIvI~GpSGSGKStLa~~La~~l~~~ii~   70 (228)
T 3a8t_A           37 HRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN   70 (228)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             5788679998988538999999999987997995


No 379
>>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} (A:)
Probab=27.21  E-value=22  Score=13.98  Aligned_cols=79  Identities=25%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH--
Q ss_conf             899984784258999999863059758999721001111036799999999741003576777589995168884442--
Q gi|254780791|r  147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL--  224 (529)
Q Consensus       147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL--  224 (529)
                      ||-||  .+....+.+++.+-++|.+.+..+    -|..       |+..+..       ..||+||+        |+  
T Consensus         5 kvLiV--DD~~~~r~~l~~~l~~~~~~v~a~----~~~e-------a~~~~~~-------~~~dlvil--------D~~m   56 (135)
T 3eqz_A            5 RVFIV--DDDTLTCNLLKTIVEPIFGNVEAF----QHPR-------AFLTLSL-------NKQDIIIL--------DLMM   56 (135)
T ss_dssp             EEEEE--CSCHHHHHHHHHHHTTTCSCEEEE----SCHH-------HHTTSCC-------CTTEEEEE--------ECCT
T ss_pred             EEEEE--ECCHHHHHHHHHHHHHCCCEEEEE----CCHH-------HHHHHHH-------CCCCEEEE--------EEEC
T ss_conf             89999--489999999999999789989993----7999-------9999982-------68880687--------7637


Q ss_pred             HHCCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf             20076999999974----890488520577752
Q gi|254780791|r  225 WHFNDEMIVRAIAN----SSIPIISAIGHETDW  253 (529)
Q Consensus       225 ~~FN~e~laraI~~----~~iPVisgIGHE~D~  253 (529)
                      =--|-.++++.|.+    .|++++||.+.....
T Consensus        57 P~~dG~e~~~~ir~~~~~~~iii~s~~~~~~~~   89 (135)
T 3eqz_A           57 PDMDGIEVIRHLAEHKSPASLILISGYDSGVLH   89 (135)
T ss_dssp             TTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf             999999999999960988968999835765450


No 380
>>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} (A:)
Probab=27.08  E-value=30  Score=12.92  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=37.7

Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             77758999516888444220076999999974890488520577752589886
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      ..+|++||         +.+-++...++.-..+.||||+=+--..|.+++||+
T Consensus       150 ~~P~liii---------~d~~~~~~ai~Ea~kl~IPvI~ivDTn~~p~~idyp  193 (253)
T 3bch_A          150 REPRLLVV---------TDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA  193 (253)
T ss_dssp             CSCSEEEE---------SCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE
T ss_pred             CCCCCEEE---------ECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
T ss_conf             46660145---------556775077777765389889994478885558767


No 381
>>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:)
Probab=26.79  E-value=30  Score=12.88  Aligned_cols=60  Identities=20%  Similarity=0.241  Sum_probs=25.8

Q ss_pred             HHHHHHHHHCCCE-EEEEEECCCCCCCHH--HHHHHH-HHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             9999986305975-899972100111103--679999-9999741003576777589995168884442
Q gi|254780791|r  160 RDILQRISCRFPL-RVIIFPVKVQGDECP--KEIANA-ILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       160 ~D~~~~~~~r~p~-~~~~~p~~vQG~~a~--~~i~~a-i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      .+.-+.|+.+|++ ++++.|+.+.+....  ..+.+. .+.++..-     ..-+++.++=||+.+..+
T Consensus        10 ~~le~~L~~~f~l~~~~vv~~~~~~~~~~~~~~va~~aa~~l~~~l-----~~~~~i~i~~ggt~~~~~   73 (264)
T 2r5f_A           10 LELETRLQKXYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSL-----SAQDHIGISSWSSTIRAX   73 (264)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCSSTTCHHHHHHHHHHHHHHHHHHHC-----CTTCEEEECTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCHHHHHH
T ss_conf             9999999998199989996799999758999999999999999866-----659879997585799999


No 382
>>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} (A:)
Probab=26.72  E-value=30  Score=12.87  Aligned_cols=80  Identities=6%  Similarity=0.021  Sum_probs=50.7

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH
Q ss_conf             98478425899999986305975899972100111103679999999974100357677758999516888444220076
Q gi|254780791|r  150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND  229 (529)
Q Consensus       150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~  229 (529)
                      |+++.+-....+....+....+-.+..+++-|-=+++...+++.+....        ..+|++|-.-|.+-..+++..++
T Consensus        49 v~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--------g~iDilvnnAg~~~~~~~~~~~~  120 (274)
T 1ja9_A           49 VVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF--------GGLDFVMSNSGMEVWCDELEVTQ  120 (274)
T ss_dssp             EEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH--------SCEEEEECCCCCCCCCCGGGCCH
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH--------CCCEEEEECCCCCCCCCHHHCCH
T ss_conf             9971898689999999999729958999824899999999999999983--------99609995663356788265999


Q ss_pred             HHHHHHHH
Q ss_conf             99999997
Q gi|254780791|r  230 EMIVRAIA  237 (529)
Q Consensus       230 e~laraI~  237 (529)
                      +..-+.+.
T Consensus       121 ~~~~~~~~  128 (274)
T 1ja9_A          121 ELFDKVFN  128 (274)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999873


No 383
>>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} (A:1-114,A:252-303)
Probab=26.69  E-value=30  Score=12.87  Aligned_cols=84  Identities=17%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             28999847-842589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      ..||||.+ .+.-.+.+|+.-+.+   ...+.++++.+.-.    ......+++.+...       .+|.|||+-...  
T Consensus        16 ~~Igliip~~~~~~~~~~~~gi~~~a~~~g~~~~l~~~~~~----~~~~~~~i~~l~~~-------~vDGiIi~~~~~--   82 (166)
T 3kke_A           16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAP----PRGTQQLSRLVSEG-------RVDGVLLQRRED--   82 (166)
T ss_dssp             -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCST----THHHHHHHHHHHSC-------SSSEEEECCCTT--
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEECCCCC--
T ss_conf             98999959898779999999999999976998999968999----79999999999958-------978898324568--


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             44220076999999974890488520577
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHE  250 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE  250 (529)
                             +......+.+..+|||. ||..
T Consensus        83 -------~~~~~~~l~~~~iPvV~-id~~  103 (166)
T 3kke_A           83 -------FDDDMLAAVLEGVPAVT-INSR  103 (166)
T ss_dssp             -------CCHHHHHHHHTTSCEEE-ESCC
T ss_pred             -------CHHHHHHHHHCCCCEEE-ECCC
T ss_conf             -------75999999975998898-1687


No 384
>>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} (A:)
Probab=26.44  E-value=17  Score=15.01  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=9.3

Q ss_pred             HHHHHHHCCC-EEEEEEECCCCCCCHH
Q ss_conf             9998630597-5899972100111103
Q gi|254780791|r  162 ILQRISCRFP-LRVIIFPVKVQGDECP  187 (529)
Q Consensus       162 ~~~~~~~r~p-~~~~~~p~~vQG~~a~  187 (529)
                      .+..++..+| +.+.....-+||.+..
T Consensus       269 ~~~~~r~~~~~~~~l~pGi~~qggg~~  295 (352)
T 2fds_A          269 EMKIIRNKFPDSYILSPGIGAQNGDLY  295 (352)
T ss_dssp             HHHHHHHHSTTCCEEECCC-----CHH
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCHH
T ss_conf             889999878998599087477789988


No 385
>>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4} (A:1-46,A:122-130,A:172-326)
Probab=26.41  E-value=30  Score=12.83  Aligned_cols=99  Identities=24%  Similarity=0.273  Sum_probs=58.1

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECCCCC---------------CCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89998478425899999986305975899-97210011---------------110367999999997410035767775
Q gi|254780791|r  147 IIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVKVQG---------------DECPKEIANAILQLNTLKEGRTCPRPD  210 (529)
Q Consensus       147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~vQG---------------~~a~~~i~~ai~~~~~~~~~~~~~~~D  210 (529)
                      +|-+|  -.|-++.=+++-|+. ++.++. +.-++=-|               -.|.++.++||+.            -|
T Consensus         6 ~iv~i--GGGtGl~~~l~glk~-~~~~itaiVtv~DdGGssG~l~~~l~~~~~~~a~p~ai~AI~~------------AD   70 (210)
T 2q7x_A            6 XITVI--GGGTGSPVILXSLRE-XDVEIAAIVTVADDGGSSGELTGXIYPSSDPLASRRVVQTILE------------SD   70 (210)
T ss_dssp             EEEEE--CCCTTHHHHHHHHHH-SSCEEEEEECCBSCGGGGSSCCSEEEESBSCCBCSHHHHHHHH------------CS
T ss_pred             EEEEE--CCCCCHHHHHHHHHH-CCCCEEEEEECCCCCCCCEEHCEEEECCCCCCCCHHHHHHHHH------------CC
T ss_conf             49998--785228999999850-9998599998840885522127589915488779999999961------------99


Q ss_pred             EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEE--EEEECC---C-CCCHHHHHHH
Q ss_conf             899951688844422007699999997489048--852057---7-7525898864
Q gi|254780791|r  211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPI--ISAIGH---E-TDWTLADYAA  260 (529)
Q Consensus       211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPV--isgIGH---E-~D~Tl~D~VA  260 (529)
                      +||++=|-==..=+-.+-=..++.||.+++-|+  |+-|+.   | ..+|..|+|.
T Consensus        71 lIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kVyV~Ni~tq~GET~g~s~~dhV~  126 (210)
T 2q7x_A           71 XIVLGPGSLFTSILPNIVIXEIGRALLETXAEIAYVCNIXTQRGETEHFTDSDHVE  126 (210)
T ss_dssp             EEEECSSCCCCCCHHHHTSHHHHHHHHHCSSEEEEECCSBCCTTSCTTCCHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             89997996077666788899999999851676499971799972337988999999


No 386
>>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} (A:1-237,A:481-521)
Probab=25.99  E-value=30  Score=12.93  Aligned_cols=15  Identities=13%  Similarity=0.040  Sum_probs=7.1

Q ss_pred             HHHHHHHCCCCCCCH
Q ss_conf             589886412377721
Q gi|254780791|r  254 TLADYAADLRAPTPT  268 (529)
Q Consensus       254 Tl~D~VAD~Ra~TPT  268 (529)
                      +++|+|-.++.=||.
T Consensus       172 ~~~d~v~~~~vV~~d  186 (278)
T 2ipi_A          172 VVADHLYAVEVVVVD  186 (278)
T ss_dssp             CGGGGEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEEC
T ss_conf             000440137999877


No 387
>>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} (A:1-145,A:269-299)
Probab=25.99  E-value=31  Score=12.77  Aligned_cols=107  Identities=19%  Similarity=0.112  Sum_probs=58.4

Q ss_pred             CCCCCCCCCC-CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE----CCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             2261001631-0265289998478425899999986305975899972----1001111036799999999741003576
Q gi|254780791|r  132 LFSDQHKNPI-PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP----VKVQGDECPKEIANAILQLNTLKEGRTC  206 (529)
Q Consensus       132 lfd~~~k~~l-P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p----~~vQG~~a~~~i~~ai~~~~~~~~~~~~  206 (529)
                      -|..+.+.+. +.-.+.|+.+=-++|--=+==-.....+-+..++.|.    +.+.+.++..+.++-|...         
T Consensus        24 ~~k~~~~~~~~~L~gk~v~llF~epSTRTR~SFe~A~~~LGg~~i~~~~~~~ss~~kgESv~DtarvLs~y---------   94 (176)
T 1pg5_A           24 KYSKNLNDTRKILSGKTISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNY---------   94 (176)
T ss_dssp             HHHSCCTTCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHH---------
T ss_pred             HHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---------
T ss_conf             99761166665679998999962787316999999999819962135663100156865099999998626---------


Q ss_pred             CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE-EECC--CCCCHHHHHH
Q ss_conf             777589995168884442200769999999748904885-2057--7752589886
Q gi|254780791|r  207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS-AIGH--ETDWTLADYA  259 (529)
Q Consensus       207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis-gIGH--E~D~Tl~D~V  259 (529)
                        +| +|++|+         |.+..+-...-.+.+|||. |=|.  ..=-.|+|+-
T Consensus        95 --~D-~iviR~---------~~~~~~~~~a~~s~vPVINAG~g~~~HPtQaLaDl~  138 (176)
T 1pg5_A           95 --SD-GIVMRH---------KYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIY  138 (176)
T ss_dssp             --CS-EEEEEE---------SSBTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHH
T ss_pred             --CC-EEEEEE---------CCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf             --85-599997---------301156775322574132277777778568999999


No 388
>>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} (A:1-146)
Probab=25.98  E-value=31  Score=12.77  Aligned_cols=83  Identities=11%  Similarity=0.064  Sum_probs=47.1

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      .||-||--  -....+++...-.+++..+    +..       +=.+||...         ..||+||+=      -.|=
T Consensus         3 mrVLiVDD--d~~~~~~l~~~L~~~g~v~----~a~-------~g~eal~~~---------~~~dliilD------~~mP   54 (146)
T 1p2f_A            3 WKIAVVDD--DKNILKKVSEKLQQLGRVK----TFL-------TGEDFLNDE---------EAFHVVVLD------VXLP   54 (146)
T ss_dssp             EEEEEECS--CHHHHHHHHHHHTTTEEEE----EES-------SHHHHHHCC---------SCCSEEEEE------SBCS
T ss_pred             CEEEEEEC--CHHHHHHHHHHHHHCCEEE----EEC-------CHHHHHHHC---------CCCCEEEEE------CCCC
T ss_conf             87999959--9999999999998699899----987-------999999527---------999999995------8998


Q ss_pred             HCCHHHHHHHHH----HCCCEEEEEECCCCCCHHH
Q ss_conf             007699999997----4890488520577752589
Q gi|254780791|r  226 HFNDEMIVRAIA----NSSIPIISAIGHETDWTLA  256 (529)
Q Consensus       226 ~FN~e~laraI~----~~~iPVisgIGHE~D~Tl~  256 (529)
                      ..|-.++++.|-    .+||+++||.+++-+..-+
T Consensus        55 ~~dG~e~~~~lr~~~~~~pii~it~~~~~~~~~~a   89 (146)
T 1p2f_A           55 DYSGYEICRXIKETRPETWVILLTLLSDDESVLKG   89 (146)
T ss_dssp             SSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHH
T ss_pred             CCCCHHHHHHHHHCCCCCCEEEECCCCCCCEEEEE
T ss_conf             88763677654530455745730222221015753


No 389
>>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A (A:57-291)
Probab=25.95  E-value=31  Score=12.77  Aligned_cols=92  Identities=15%  Similarity=0.069  Sum_probs=48.6

Q ss_pred             CEEEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH-----HHHCCHHHHHHHHHHCCC
Q ss_conf             7589997210011----1103679999999974100357677758999516888444-----220076999999974890
Q gi|254780791|r  171 PLRVIIFPVKVQG----DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED-----LWHFNDEMIVRAIANSSI  241 (529)
Q Consensus       171 p~~~~~~p~~vQG----~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD-----L~~FN~e~laraI~~~~i  241 (529)
                      |+-++-....|+|    .....-++++++.+.+..       .-+|.++-.||..-+     |..+-.-.-+-+.+...+
T Consensus        53 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~lA~~~~-------lPlv~l~ds~G~~~~e~~~~~~~~~~i~~~~~~~~~~v  125 (235)
T 2bzr_A           53 DVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-------RPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVI  125 (235)
T ss_dssp             EEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-------CCEEEEECCCSCCGGGTTHHHHHHHHHHHHHHHTTTTS
T ss_pred             EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             99999987850252788677799999999999728-------97899970588655654311100101789999984899


Q ss_pred             EEEEEECCCCC---CHHHHHHHCCCCCCCHH
Q ss_conf             48852057775---25898864123777214
Q gi|254780791|r  242 PIISAIGHETD---WTLADYAADLRAPTPTG  269 (529)
Q Consensus       242 PVisgIGHE~D---~Tl~D~VAD~Ra~TPTa  269 (529)
                      |+|+.|--.+=   .-..=+-.|+-..+|++
T Consensus       126 P~i~vv~g~~~gGga~~~~~~~~~~~~~~~~  156 (235)
T 2bzr_A          126 PQISLIMGAAAGGHVYSPALTDFVIMVDQTS  156 (235)
T ss_dssp             CEEEEECSEEESGGGHHHHHSSEEEEETTTC
T ss_pred             CEEEEECCCCCCCEEEEECCCCCEEEECCCC
T ss_conf             8799973566653156740476158742665


No 390
>>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A (A:1-159,A:246-294)
Probab=25.85  E-value=31  Score=12.75  Aligned_cols=91  Identities=13%  Similarity=0.017  Sum_probs=54.0

Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCC
Q ss_conf             721001111036799999999741003576777589995-16888444220076999999974890488520577--752
Q gi|254780791|r  177 FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA-RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDW  253 (529)
Q Consensus       177 ~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~-RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~  253 (529)
                      +-.-.-|......|+++|+.+......     -.+++.+ =+||+..-  .+.-....+.......||++.+|+-  .==
T Consensus        62 ~~~g~ig~~~~~~i~~~l~~A~~~~~~-----k~ivl~InSpGG~v~a--~~~I~~~i~~~~~~~~pVv~~v~g~aASgg  134 (208)
T 3bf0_A           62 ASSDRLQENSLFDIVNTIRQAKDDRNI-----TGIVMDLKNFAGGDQP--SMQYIGKALKEFRDSGKPVYAVGENYSQGQ  134 (208)
T ss_dssp             -----CCEEEHHHHHHHHHHHHHCTTC-----CCEEEECTEEEECCHH--HHHHHHHHHHHHHHTTCCEEEEESCEEHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCC-----EEEEEECCCCCCCCHH--HHHHHHHHHHHHHHHCCEEEEEECCCCHHH
T ss_conf             887754321399999999998349995-----0899981698886599--999999999999970990999962553365


Q ss_pred             HHHHHHHCCCCCCCHHHHHHH
Q ss_conf             589886412377721456763
Q gi|254780791|r  254 TLADYAADLRAPTPTGAAEMA  274 (529)
Q Consensus       254 Tl~D~VAD~Ra~TPTaAAEla  274 (529)
                      +.+=..||.+..+|++-.-.+
T Consensus       135 ~~ia~aaD~I~a~p~a~iGsi  155 (208)
T 3bf0_A          135 YYLASFANKIWLSPQGVVDLH  155 (208)
T ss_dssp             HHHHTTSSEEEECTTCCEECC
T ss_pred             HHHHHHCCEEEECCCCEEEEE
T ss_conf             686743888998799765143


No 391
>>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} (A:)
Probab=25.83  E-value=31  Score=12.75  Aligned_cols=103  Identities=11%  Similarity=0.112  Sum_probs=60.3

Q ss_pred             EEEEEC-CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH----------CCCCCCCCCCEEEEEC
Q ss_conf             999847-84258999999863059758999721001111036799999999741----------0035767775899951
Q gi|254780791|r  148 IAVITS-PTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTL----------KEGRTCPRPDIIILAR  216 (529)
Q Consensus       148 i~vits-~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~----------~~~~~~~~~D~iii~R  216 (529)
                      |.||-- .|-.-+.-.++.+...-+-.+.+..+.-|+..+....+.......-.          ...-....+|+++|. 
T Consensus        44 i~IinL~kT~~~L~~A~~~i~~~~~~~iLfV~t~~~~~~~i~~~a~~~~~~~v~~rw~gG~LTN~~~~~~~~P~liii~-  122 (208)
T 1vi6_A           44 LYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVN-  122 (208)
T ss_dssp             CEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEES-
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEEE-
T ss_conf             6996799999999999999975134755787225307789999997359975456455776555777531013279997-


Q ss_pred             CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             6888444220076999999974890488520577752589886
Q gi|254780791|r  217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                              .+..|...++....+.||||+=+---+|.+++||+
T Consensus       123 --------d~~~~~~ai~Ea~~l~IP~Ial~DTn~~p~~idyp  157 (208)
T 1vi6_A          123 --------DPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLV  157 (208)
T ss_dssp             --------CTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE
T ss_pred             --------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
T ss_conf             --------67610789999986389736760367895358878


No 392
>>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structural comparisons, virus/viral protein complex; 1.20A {Enterobacteria phage T4} PDB: 2fl9_A (A:284-456)
Probab=25.79  E-value=31  Score=12.74  Aligned_cols=18  Identities=11%  Similarity=0.196  Sum_probs=9.8

Q ss_pred             EEEEECCCCEEEEEEECC
Q ss_conf             999874894799999735
Q gi|254780791|r   54 YFSLKDNHSRIDAIIWKG   71 (529)
Q Consensus        54 Yf~lkd~~a~i~~~~~~~   71 (529)
                      |=-.-|++..+....|..
T Consensus        73 Ys~~~d~~~~~~~i~f~~   90 (173)
T 2fl8_A           73 YSVETDENGIPEILHFDS   90 (173)
T ss_pred             EEEEECCCCCEEEEEECC
T ss_conf             368976888777888446


No 393
>>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} (A:)
Probab=25.78  E-value=31  Score=12.74  Aligned_cols=30  Identities=30%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             HHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             220076999999974890488520577752
Q gi|254780791|r  224 LWHFNDEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       224 L~~FN~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                      .-..|.+.+-..+-.--||||+.+|+-.+-
T Consensus       145 ~~~v~~~~i~~ll~~~~ipvi~~~~~~~~g  174 (282)
T 2bty_A          145 VKKVNPEILHALIENDYIPVIAPVGIGEDG  174 (282)
T ss_dssp             EEEECTHHHHHHHHTTCEEEEESEEECSSS
T ss_pred             HHEECHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf             110066889999847985254576678870


No 394
>>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* (A:)
Probab=25.69  E-value=31  Score=12.73  Aligned_cols=92  Identities=16%  Similarity=0.090  Sum_probs=53.9

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      .|||-||-.  .....++++..-++|++++.....          -..|+..+...       .||++|+=-      +|
T Consensus         1 ~kriLiVdD--~~~~~~~i~~~L~~~g~~v~~a~~----------~~~al~~~~~~-------~~dliilD~------~l   55 (116)
T 3a10_A            1 XKRILVVDD--EPNIRELLKEELQEEGYEIDTAEN----------GEEALKKFFSG-------NYDLVILDI------EX   55 (116)
T ss_dssp             CCEEEEECS--CHHHHHHHHHHHHHTTCEEEEESS----------HHHHHHHHHHS-------CCSEEEECS------CC
T ss_pred             CCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEEEC------CC
T ss_conf             988999969--899999999999986998999689----------99999988634-------877899852------68


Q ss_pred             HHCCHHHHHHHHHH--CCCEE--EEEECCCCCCHHHHHHHC
Q ss_conf             20076999999974--89048--852057775258988641
Q gi|254780791|r  225 WHFNDEMIVRAIAN--SSIPI--ISAIGHETDWTLADYAAD  261 (529)
Q Consensus       225 ~~FN~e~laraI~~--~~iPV--isgIGHE~D~Tl~D~VAD  261 (529)
                      =..|-.++++.|-+  ..+||  +||.+.+.+....--+.|
T Consensus        56 p~~~G~el~~~lr~~~~~~pii~lt~~~~~~~~~~~~G~~d   96 (116)
T 3a10_A           56 PGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDXSSWAADE   96 (116)
T ss_dssp             SSSCHHHHHHHHHHHCTTCCEEEEESCGGGGGCGGGGGSSE
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCE
T ss_conf             99987999999997389981999978488999998269988


No 395
>>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=25.56  E-value=31  Score=12.71  Aligned_cols=39  Identities=21%  Similarity=0.317  Sum_probs=25.9

Q ss_pred             CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             6777589995168884442200769999999748904885
Q gi|254780791|r  206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      ..++|.|||.=|.++..|- .-..-.+.+.+.+..+||+-
T Consensus        35 l~~~dgivi~GG~~~~~~~-~~~~~~li~~~~~~~~PilG   73 (186)
T 2ywj_A           35 LEGIDALIIPGGESTAIGK-LMKKYGLLEKIKNSNLPILG   73 (186)
T ss_dssp             GTTCSEEEECCSCHHHHHH-HHHHTTHHHHHHTCCCCEEE
T ss_pred             HHCCCEEEECCCCCCCCCC-CCCCCCHHHHHHCCCCCEEE
T ss_conf             5077868988999851221-11121045677507983898


No 396
>>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (A:69-200)
Probab=25.49  E-value=31  Score=12.70  Aligned_cols=54  Identities=17%  Similarity=0.124  Sum_probs=30.0

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHH----HCCCEEEEEEECC-CCCCCHHHHHHHHHHHH
Q ss_conf             652899984784258999999863----0597589997210-01111036799999999
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRIS----CRFPLRVIIFPVK-VQGDECPKEIANAILQL  197 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~----~r~p~~~~~~p~~-vQG~~a~~~i~~ai~~~  197 (529)
                      -|+-|+|+|+..++.++|=+.-+.    ++.+..|+..++. ..|..-..-.-.|+..+
T Consensus        66 ~p~~I~v~~tC~~~iIGdDi~~i~~~~~~~~~~~vi~v~~~gf~~~~~~~G~~~al~~l  124 (132)
T 1mio_A           66 HPAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIANNTV  124 (132)
T ss_dssp             CCSEEEECCCHHHHHHTCCHHHHHHHHHHHHSSCEEECCCCTTSSSSTHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             99899997786798863489999999889758966998478766864104999999999


No 397
>>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} (A:)
Probab=25.48  E-value=31  Score=12.70  Aligned_cols=87  Identities=6%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             5289998478425899999986305975-899972100111103679999999974100357677758999516888444
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      +.||-||-  +....++++..+-..|++ .+.          ++.+.-.|++.+...       .||+||+-      -+
T Consensus         6 ~~riLiVd--d~~~~~~~l~~~L~~~g~~~v~----------~a~~~~~a~~~l~~~-------~~dlvilD------~~   60 (129)
T 1p6q_A            6 KIKVLIVD--DQVTSRLLLGDALQQLGFKQIT----------AAGDGEQGMKIMAQN-------PHHLVISD------FN   60 (129)
T ss_dssp             CCCEEEEC--SSHHHHHHHHHHHHTTTCSCEE----------CCSSHHHHHHHHHTS-------CCSEEEEC------SS
T ss_pred             CCEEEEEE--CCHHHHHHHHHHHHHCCCEEEE----------EECCHHHHHHHHHHC-------CCCEEEEE------CC
T ss_conf             88899994--9999999999999987993999----------989999999999728-------99899994------58


Q ss_pred             HHHCCHHHHHHHHH----HCCCEEEEEECCCCCCHHH
Q ss_conf             22007699999997----4890488520577752589
Q gi|254780791|r  224 LWHFNDEMIVRAIA----NSSIPIISAIGHETDWTLA  256 (529)
Q Consensus       224 L~~FN~e~laraI~----~~~iPVisgIGHE~D~Tl~  256 (529)
                      |-..|-.++++.|-    ...+|||-=.||..+....
T Consensus        61 lp~~dG~el~~~ir~~~~~~~~pvi~lt~~~~~~~~~   97 (129)
T 1p6q_A           61 MPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQ   97 (129)
T ss_dssp             SCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHH
T ss_conf             8999879999999838556898399998139999999


No 398
>>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:1-105,A:242-288)
Probab=25.42  E-value=31  Score=12.69  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=60.7

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             28999847842589999998630---597589997210011110367999999997410035767775899951688844
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      +.||||.+.+..-+..+++-+.+   ..++.++++.+-    +-+....+.++.+-..       ++|.||++--.....
T Consensus         9 ~tIGvIvpd~npff~~ii~gIe~~a~~~Gy~vlI~~s~----~d~e~e~~~i~~li~~-------~VDGIIl~~~~~~~~   77 (152)
T 2qu7_A            9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSE----ENEDKQQDLIETFVSQ-------NVSAIILVPVKSKFQ   77 (152)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECT----TCHHHHHHHHHHHHHT-------TEEEEEECCSSSCCC
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCCCCCCCCHHHHH
T ss_conf             98999918999799999999999999859999999689----9989999999999745-------967221256213566


Q ss_pred             HHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             4220076999999974890488520577752589886
Q gi|254780791|r  223 DLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       223 DL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      +.+           ....+|+|. |+...|-.-.|+|
T Consensus        78 ~~~-----------~~~~IPvV~-idr~~~~~~~~~V  102 (152)
T 2qu7_A           78 MKR-----------EWLKIPIMT-LDRELESTSLPSI  102 (152)
T ss_dssp             CCG-----------GGGGSCEEE-ESCCCSSCCCCEE
T ss_pred             HHH-----------HHHHEEEEE-CCCCCCCCCCCCC
T ss_conf             655-----------431200000-1234333222231


No 399
>>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} (A:26-209)
Probab=25.35  E-value=31  Score=12.68  Aligned_cols=26  Identities=4%  Similarity=-0.014  Sum_probs=12.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf             28999847842589999998630597
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFP  171 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p  171 (529)
                      .+..+|.....+.+.+....+....+
T Consensus        35 ~~~~~v~~~~~~~~~~l~~~l~~~~~   60 (184)
T 2fr1_A           35 ARVRELVVDARCGRDELAERLRSVGE   60 (184)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHTTSCC
T ss_pred             CEEEEECCCCCCCHHHHHHHHHCCCC
T ss_conf             84899678987588899988745688


No 400
>>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:35-261)
Probab=25.32  E-value=14  Score=15.88  Aligned_cols=41  Identities=22%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEECCCCCH-----------HHHHHCCHHHH
Q ss_conf             1110367999999997410035767775-89995168884-----------44220076999
Q gi|254780791|r  183 GDECPKEIANAILQLNTLKEGRTCPRPD-IIILARGGGSI-----------EDLWHFNDEMI  232 (529)
Q Consensus       183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D-~iii~RGGGS~-----------eDL~~FN~e~l  232 (529)
                      |-.|+.+|.+.+   ....+      -| ||+++-||||-           ||+-..|+.-+
T Consensus        75 s~~Aa~~il~~~---~~~~~------~dlvl~LiSGGgSALl~~P~~gitL~dk~~~~~~Ll  127 (227)
T 2b8n_A           75 TIKTTRRVLELV---DQLNE------NDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALL  127 (227)
T ss_dssp             HHHHHHHHHHHH---SSCCT------TCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HCCCC------CCEEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHH
T ss_conf             999999999999---61899------874899852885401104899999999999999998


No 401
>>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:)
Probab=25.20  E-value=32  Score=12.66  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=57.8

Q ss_pred             CCCCCCCEEEEEEC-CC-HHHHHHHHHHHHH-CCCEEEE-EEE----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             31026528999847-84-2589999998630-5975899-972----100111103679999999974100357677758
Q gi|254780791|r  140 PIPFIPKIIAVITS-PT-GAVIRDILQRISC-RFPLRVI-IFP----VKVQGDECPKEIANAILQLNTLKEGRTCPRPDI  211 (529)
Q Consensus       140 ~lP~~p~~i~vits-~~-~a~~~D~~~~~~~-r~p~~~~-~~p----~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~  211 (529)
                      ..-.-|++||||-. .+ +..-.-+++.+.+ .|+  ++ +.|    ..+-|..+..++.+.       .     ..+|+
T Consensus         8 ~~l~~pk~iAViG~S~~~~~~g~~v~~~l~~~g~~--v~~v~p~~~~~ei~G~~~~~sl~ei-------p-----~~iD~   73 (145)
T 2duw_A            8 GILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH--VIPVSPKVAGKTLLGQQGYATLADV-------P-----EKVDM   73 (145)
T ss_dssp             HHHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC--EEEECSSSTTSEETTEECCSSTTTC-------S-----SCCSE
T ss_pred             HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCE--EEEECCCCCEEEEEEEECCCCHHHC-------C-----CCCCE
T ss_conf             99866893999920799998389999999868986--8985245441256206225754446-------7-----62116


Q ss_pred             EEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf             99951688844422007699999997489048852057775258988641
Q gi|254780791|r  212 IILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD  261 (529)
Q Consensus       212 iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD  261 (529)
                      ++|++..-...        .+++.+.+..++.+--+..-.+..+.+.+.+
T Consensus        74 v~i~~p~~~~~--------~~i~e~~~~g~k~~~~~~~~~~e~~~~~a~~  115 (145)
T 2duw_A           74 VDVFRNSEAAW--------GVAQEAIAIGAKTLWLQLGVINEQAAVLARE  115 (145)
T ss_dssp             EECCSCSTHHH--------HHHHHHHHHTCCEEECCTTCCCHHHHHHHHT
T ss_pred             EEEECCHHHHH--------HHHHHHHHCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             89951499999--------9999999729975995245441999999999


No 402
>>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} (A:27-171)
Probab=25.19  E-value=32  Score=12.66  Aligned_cols=32  Identities=9%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf             65289998478425899999986305975899
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVI  175 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~  175 (529)
                      -+.-+......+...++.+...+.+++++-++
T Consensus        46 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~   77 (145)
T 2zvf_A           46 SXKVVAEVVDADXQALQKLAERLAEKGAVGCL   77 (145)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHHHHTTEEEEE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf             95068866258989999999998434774887


No 403
>>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} (A:)
Probab=24.98  E-value=32  Score=12.63  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=24.6

Q ss_pred             HHCCHHHHHCCCEEEEECCCC-CEECCHHHCCCCCEEE
Q ss_conf             716967773146199984898-8957778929998699
Q gi|254780791|r  450 QSFAYKNTLKRGYTSIQDTNN-NFITQKRNLATKTRIL  486 (529)
Q Consensus       450 ~slsP~~~L~RGYaiv~~~~G-kiI~s~~~l~~gd~i~  486 (529)
                      +.+.|...|-.|=--++..+| +.|++.+++..|+...
T Consensus        47 ~~l~~~~~l~~~Vr~lyT~~G~~~V~~l~dl~~g~~yV   84 (116)
T 1uf0_A           47 RTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYV   84 (116)
T ss_dssp             HHSCCSSSCSSCCCEEEESSSSCEECSTTSCCSSEEEE
T ss_pred             HHHHHCCCCCCCCEEEECCCCCCCCCCHHHHCCCCEEE
T ss_conf             98711478987724998699980858999966899899


No 404
>>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A (A:108-195)
Probab=24.89  E-value=14  Score=15.70  Aligned_cols=20  Identities=15%  Similarity=0.514  Sum_probs=7.2

Q ss_pred             EEEEECCCHHHHHHHHHHHH
Q ss_conf             99984784258999999863
Q gi|254780791|r  148 IAVITSPTGAVIRDILQRIS  167 (529)
Q Consensus       148 i~vits~~~a~~~D~~~~~~  167 (529)
                      +|++++.+-.++.|+++|++
T Consensus        39 vglvspssvsvladmlrtlr   58 (88)
T 2bbr_A           39 VGLVSPSSVSVLADMLRTLR   58 (88)
T ss_dssp             TTSCBTTBCHHHHHHHHHTT
T ss_pred             HCCCCCCHHHHHHHHHHHCC
T ss_conf             09989623999999999849


No 405
>>2qo3_A Eryaii erythromycin polyketide synthase modules 3 and 4; ketosynthase, acyltransferase, phosphopantetheine; 2.59A {Saccharopolyspora erythraea} (A:439-530,A:837-864)
Probab=24.59  E-value=32  Score=12.57  Aligned_cols=58  Identities=12%  Similarity=0.129  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHH-C--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-HHHHHCC
Q ss_conf             89999998630-5--9758999721001111036799999999741003576777589995168884-4422007
Q gi|254780791|r  158 VIRDILQRISC-R--FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-EDLWHFN  228 (529)
Q Consensus       158 ~~~D~~~~~~~-r--~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-eDL~~FN  228 (529)
                      -+.|++.|+.. |  +|+...+.-.      ...+++.+|+.+..-       .+++..+--|-|+. .||.+|-
T Consensus        38 ~l~DLayTL~~rRs~~~~R~aiva~------s~~el~~~L~~~~~~-------~~~i~fvFsGqGaQw~~~~~~~   99 (120)
T 2qo3_A           38 DLAGVGLGLATTRARHEHRAAVVAS------TREEAVRGLREIAAG-------AATADAVVEGVTEVDGDLSAFL   99 (120)
T ss_dssp             CHHHHHHHHHHSSCCCSEEEEEEES------SHHHHHHHHHHHHHT-------CCCCTTEEEEECSCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEC------CHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCHHHHHH
T ss_conf             3678999986544305561588734------579998889998515-------6532232222234787899999


No 406
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:1-163,A:294-332)
Probab=24.50  E-value=32  Score=12.56  Aligned_cols=108  Identities=14%  Similarity=0.133  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             99999999765401226100163-10265289998478-42589999998630---597589997210011110367999
Q gi|254780791|r  118 TALEKRKKKLLEEGLFSDQHKNP-IPFIPKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIAN  192 (529)
Q Consensus       118 ~~~e~lk~~L~~eGlfd~~~k~~-lP~~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~  192 (529)
                      ...++.++-.++.||.-....+. .......|+++... +..-+.+++.-+.+   +.++.+.++++.-..+    ....
T Consensus        35 ~TrerV~~aa~elgY~~~~~a~~~~~~~~~~i~~i~~~~~~~~~~~il~gi~~~a~~~G~~v~i~~~~~d~~----~~~~  110 (202)
T 2o20_A           35 KTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVE----KEEK  110 (202)
T ss_dssp             ---------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH----HHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCHH----HHHH
T ss_conf             999999999999689769889976308874520013455565211112220345552585245134568778----8999


Q ss_pred             HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             99999741003576777589995168884442200769999999748904885
Q gi|254780791|r  193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis  245 (529)
                      .++.+...       ++|.+|+.-..-         ++..+..+....+|++.
T Consensus       111 ~l~~l~~~-------~vdGiIi~~~~~---------~~~~~~~l~~~~iPvVl  147 (202)
T 2o20_A          111 VLETFLSK-------QVDGIVYMGSSL---------DEKIRTSLKNSRTPVVL  147 (202)
T ss_dssp             HHHHHHHT-------TCSEEEECSSCC---------CHHHHHHHHHHCCCEEE
T ss_pred             HHHHHHHC-------CCCCCCCCCCCC---------CHHHHHHHCCCCCCEEE
T ss_conf             99999820-------756540101345---------36777663157787786


No 407
>>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A (A:1-82)
Probab=24.26  E-value=33  Score=12.52  Aligned_cols=20  Identities=25%  Similarity=0.395  Sum_probs=14.9

Q ss_pred             EEEEEEE---CCCCCCCHHHHHH
Q ss_conf             5899972---1001111036799
Q gi|254780791|r  172 LRVIIFP---VKVQGDECPKEIA  191 (529)
Q Consensus       172 ~~~~~~p---~~vQG~~a~~~i~  191 (529)
                      +.|.+|.   +.+||.+|..++.
T Consensus        41 ~tIt~Y~SGKVlfQGk~ae~~a~   63 (82)
T 2d0b_A           41 VVITAYRSGKVLFQGKAAEQEAA   63 (82)
T ss_dssp             CEEEEETTSEEEEESTTHHHHHH
T ss_pred             CEEEEEECCEEEEECCCHHHHHH
T ss_conf             58999957789996587799999


No 408
>>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:1-133)
Probab=24.24  E-value=33  Score=12.52  Aligned_cols=89  Identities=11%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             CCCCEEEEEECCCHHHHH--HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             265289998478425899--999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIR--DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~--D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      .-+++|+|+-|-.+=|-+  |+++...++  |+|..    +=+..-...+.+.++.|+          |..+++.-....
T Consensus         7 ~~mk~i~ILGSTGSIG~qtL~Vi~~~~d~--f~vv~----lsa~~n~~~L~~q~~ef~----------p~~v~v~d~~~~   70 (133)
T 1q0q_A            7 SGMKQLTILGSTGSIGCSTLDVVRHNPEH--FRVVA----LVAGKNVTRMVEQCLEFS----------PRYAVMDDEASA   70 (133)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHCTTT--EEEEE----EEESSCHHHHHHHHHHHC----------CSEEEESSHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCC--CEEEE----EEECCCHHHHHHHHHHHC----------CCEEEEECHHHH
T ss_conf             89968999754879899999999839477--48999----994897999999999839----------999999488999


Q ss_pred             HH--HHH---------HCCHHHHHHHHHHCCCEE-EEEE
Q ss_conf             44--422---------007699999997489048-8520
Q gi|254780791|r  221 IE--DLW---------HFNDEMIVRAIANSSIPI-ISAI  247 (529)
Q Consensus       221 ~e--DL~---------~FN~e~laraI~~~~iPV-isgI  247 (529)
                      .+  +++         .+.++.|.+.+..+++-+ ++||
T Consensus        71 ~~lk~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~vv~Ai  109 (133)
T 1q0q_A           71 KLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAI  109 (133)
T ss_dssp             HHHHHHHHHTTCCCEEEESHHHHHHHHTCTTCCEEEECC
T ss_pred             HHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCCEEEEEC
T ss_conf             999998773489957975706888874567778999942


No 409
>>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} (A:)
Probab=24.24  E-value=33  Score=12.52  Aligned_cols=85  Identities=20%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      .|+||-||-.  ...+..+++..-..+++.+....+.          -.|++.+...       .||+||+-=      .
T Consensus         1 ~P~rVLiVdd--d~~~~~~l~~~L~~~g~~v~~a~~~----------~~al~~~~~~-------~~dliilD~------~   55 (122)
T 1zgz_A            1 XPHHIVIVED--EPVTQARLQSYFTQEGYTVSVTASG----------AGLREIXQNQ-------SVDLILLDI------N   55 (122)
T ss_dssp             -CCEEEEECS--SHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHHHHHS-------CCSEEEEES------C
T ss_pred             CCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHCC-------CCCEEEEEH------H
T ss_conf             9985999979--9999999999999639999998999----------9999997515-------996886500------1


Q ss_pred             HHHCCHHHHHHHHHHC-CCEEEEEECCCCCC
Q ss_conf             2200769999999748-90488520577752
Q gi|254780791|r  224 LWHFNDEMIVRAIANS-SIPIISAIGHETDW  253 (529)
Q Consensus       224 L~~FN~e~laraI~~~-~iPVisgIGHE~D~  253 (529)
                      +-..|-.++++.|.+- ++|||-=.+|....
T Consensus        56 mp~~dG~~~~~~ir~~~~~pii~ls~~~~~~   86 (122)
T 1zgz_A           56 LPDENGLXLTRALRERSTVGIILVTGRSDRI   86 (122)
T ss_dssp             CSSSCHHHHHHHHHTTCCCEEEEEESSCCHH
T ss_pred             CCCCCHHHHHHHHHHCCCCCEEEEEECCCHH
T ss_conf             0463025789998722566359999449999


No 410
>>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} (A:)
Probab=24.23  E-value=33  Score=12.52  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=46.5

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH
Q ss_conf             98478425899999986305975899972100111103679999999974100357677758999516888444220076
Q gi|254780791|r  150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND  229 (529)
Q Consensus       150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~  229 (529)
                      +|+..+.....+....+....+-....+++-|.=+++..+.++.+..-        ...+|++|-.=|.+...++-.+.+
T Consensus        49 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~g~iDilVnnA~~~~~~~~~~~~~  120 (267)
T 1vl8_A           49 VVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK--------FGKLDTVVNAAGINRRHPAEEFPL  120 (267)
T ss_dssp             EEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH--------HSCCCEEEECCCCCCCCCGGGCCH
T ss_pred             EEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCCEEEECCCCCCCCCHHHCCH
T ss_conf             999798899999999999971994899984699999999999999997--------399989998999899999155999


Q ss_pred             HHHHHHHH
Q ss_conf             99999997
Q gi|254780791|r  230 EMIVRAIA  237 (529)
Q Consensus       230 e~laraI~  237 (529)
                      ++.-+.+.
T Consensus       121 ~~~~~~~~  128 (267)
T 1vl8_A          121 DEFRQVIE  128 (267)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99997533


No 411
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:1-105,A:202-373)
Probab=24.16  E-value=33  Score=12.51  Aligned_cols=128  Identities=22%  Similarity=0.195  Sum_probs=62.1

Q ss_pred             EEEEEEEC-C-CCHHHHHHHHHHHHHHHH-HC-----CCCCC--------------CCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf             99971016-8-007999999999976540-12-----26100--------------163102652899984784258999
Q gi|254780791|r  104 IIESLIPS-G-SGTLLTALEKRKKKLLEE-GL-----FSDQH--------------KNPIPFIPKIIAVITSPTGAVIRD  161 (529)
Q Consensus       104 ~v~~i~~~-g-~G~l~~~~e~lk~~L~~e-Gl-----fd~~~--------------k~~lP~~p~~i~vits~~~a~~~D  161 (529)
                      .|-+|.-+ | .-...+.++.+++-++++ |.     +|..-              +...|.-..-|++---.++..+..
T Consensus        63 ~~~R~n~sh~~~~~~~~~~~~~r~~~~~~~~~~~~i~~d~~GpiP~it~~D~~~~v~~a~p~G~rgi~~sfv~~a~~~~~  142 (277)
T 3gg8_A           63 NVCRLNFSHGDHETHARTVQNIQEAMKQRPEARLAILLDTKGPLPVIGEKDKHDILNFGIPMGCNFIAASFVQSADDVRY  142 (277)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHHHHHCTTCCCEEEEECCCCSCSSCHHHHHHHHHTTTTTTCCEEEETTCCSHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
T ss_conf             99999899999999999999999999865899859999488981244235689999999971998563202465577899


Q ss_pred             HHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH--HHHHC-CHHHHHHHHH
Q ss_conf             9998630597-589997210011110367999999997410035767775899951688844--42200-7699999997
Q gi|254780791|r  162 ILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE--DLWHF-NDEMIVRAIA  237 (529)
Q Consensus       162 ~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e--DL~~F-N~e~laraI~  237 (529)
                      +...++.... ..|+.-==...|-....+|+.+               +|.|+|+||-=|.+  --+-| ..+.+.+++-
T Consensus       143 ~~~~l~~~~~~~~viakIEt~eavenldeIl~~---------------~DgI~iGrgDLs~~lg~~~~~~~q~~i~~~~~  207 (277)
T 3gg8_A          143 IRGLLGPRGRHIRIIPKIENVEGLVNFDEILAE---------------ADGIMIARGDLGMEIPPEKVFLAQKMMIAKCN  207 (277)
T ss_dssp             HHHHHTGGGTTCEEEEEECSHHHHHTHHHHHHH---------------CSCEEEEHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHH---------------CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             999998669836999973446666522889875---------------78799976870003798899999999999877


Q ss_pred             HCCCEEEEE
Q ss_conf             489048852
Q gi|254780791|r  238 NSSIPIISA  246 (529)
Q Consensus       238 ~~~iPVisg  246 (529)
                      ..--|++.+
T Consensus       208 ~~~k~v~~a  216 (277)
T 3gg8_A          208 VVGKPVITA  216 (277)
T ss_dssp             HTTCCEEEE
T ss_pred             HCCCEEEEE
T ss_conf             339838995


No 412
>>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} (A:)
Probab=24.16  E-value=33  Score=12.51  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r  145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      .+||-||-.  ....+.+++.+-..+++++....          +--.|++.+...       .||+||+        |+
T Consensus         3 ~~~iLiVdd--~~~~~~~l~~~l~~~g~~v~~a~----------~~~eal~~l~~~-------~~dliil--------D~   55 (124)
T 1srr_A            3 NEKILIVDD--QSGIRILLNEVFNKEGYQTFQAA----------NGLQALDIVTKE-------RPDLVLL--------DM   55 (124)
T ss_dssp             CCEEEEECS--CHHHHHHHHHHHHTTTCEEEEES----------SHHHHHHHHHHH-------CCSEEEE--------ES
T ss_pred             CCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE--------EC
T ss_conf             885999979--99999999999998699899959----------989999999807-------9988998--------53


Q ss_pred             H--HCCHHHHHHHHH--HCCCEEEEEECCCCCCHHHHH
Q ss_conf             2--007699999997--489048852057775258988
Q gi|254780791|r  225 W--HFNDEMIVRAIA--NSSIPIISAIGHETDWTLADY  258 (529)
Q Consensus       225 ~--~FN~e~laraI~--~~~iPVisgIGHE~D~Tl~D~  258 (529)
                      +  ..|-.++++.|-  ...+|||-=.||.........
T Consensus        56 ~lp~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~~~   93 (124)
T 1srr_A           56 KIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQES   93 (124)
T ss_dssp             CCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
T ss_conf             69999889999999960999989999888999999999


No 413
>>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} (A:)
Probab=24.14  E-value=33  Score=12.51  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=15.7

Q ss_pred             CCEEEEECCCC-CHHHHHHCCHHHHHHH-HHHCCCEEEE
Q ss_conf             75899951688-8444220076999999-9748904885
Q gi|254780791|r  209 PDIIILARGGG-SIEDLWHFNDEMIVRA-IANSSIPIIS  245 (529)
Q Consensus       209 ~D~iii~RGGG-S~eDL~~FN~e~lara-I~~~~iPVis  245 (529)
                      +|+||++..|- .+..++   --.+++. +..+++||+.
T Consensus       252 ~dliV~G~~~~~~~~~~~---~Gs~s~~il~~~~~pVli  287 (294)
T 3loq_A          252 ATTIFXGSRGAGSVXTXI---LGSTSESVIRRSPVPVFV  287 (294)
T ss_dssp             CSEEEEECCCCSCHHHHH---HHCHHHHHHHHCSSCEEE
T ss_pred             CCEEEEECCCCCCCCCCC---CCHHHHHHHHHCCCCEEE
T ss_conf             989999478886531030---380999999609998999


No 414
>>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:104-204)
Probab=24.05  E-value=33  Score=12.49  Aligned_cols=83  Identities=23%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             CCCEEEEEECC--CHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             65289998478--4258999999863059758999-----7210011110367999999997410035767775899951
Q gi|254780791|r  144 IPKIIAVITSP--TGAVIRDILQRISCRFPLRVII-----FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR  216 (529)
Q Consensus       144 ~p~~i~vits~--~~a~~~D~~~~~~~r~p~~~~~-----~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R  216 (529)
                      .-+||+|++-.  ....+.|+++    .+++++..     .+..+=+...+.++.++++.+...       ..|+|+|+=
T Consensus        11 ~~~ri~V~py~~~~~~~~~~~~~----~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~adai~l~C   79 (101)
T 2eq5_A           11 YGRRVGVLNLTEETPKVIRSILG----NNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEK-------GVEVIALGC   79 (101)
T ss_dssp             TCSSEEEECSSSCCCHHHHHHHG----GGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHT-------TCSEEEECC
T ss_pred             HCCCEEEEECHHHHHHHHHHHHH----HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC-------CCCEEEEEC
T ss_conf             27863566504626999999998----7401013440221001245788999999999999866-------998899806


Q ss_pred             CCCCHHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf             6888444220076999999974890488
Q gi|254780791|r  217 GGGSIEDLWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       217 GGGS~eDL~~FN~e~laraI~~~~iPVi  244 (529)
                      .|=..-|+       +..--....+|||
T Consensus        80 t~l~~~~~-------~~~Le~~lgvPVi  100 (101)
T 2eq5_A           80 TGMSTIGI-------APVLEEEVGIPVI  100 (101)
T ss_dssp             THHHHHTC-------HHHHHHHHSSCEE
T ss_pred             CCCCHHHH-------HHHHHHCCCCEEE
T ss_conf             87202555-------8988435898698


No 415
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:62-285)
Probab=24.02  E-value=33  Score=12.49  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             EEEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH--HHC-CHHHHH---HHHHHCCC
Q ss_conf             589997210011----11036799999999741003576777589995168884442--200-769999---99974890
Q gi|254780791|r  172 LRVIIFPVKVQG----DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL--WHF-NDEMIV---RAIANSSI  241 (529)
Q Consensus       172 ~~~~~~p~~vQG----~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL--~~F-N~e~la---raI~~~~i  241 (529)
                      +-|+-....|+|    .....-++++++.+.+.+       .-+|.++.+||..-.-  -.+ --..+.   .+++...+
T Consensus        62 V~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~-------iPiv~l~dt~G~~~~e~~e~~~~~~~~~~~~~~~~~~~v  134 (224)
T 2f9i_B           62 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-------LPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGL  134 (224)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-------CCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-------CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             6512326777535578799999999999999614-------537999278975546555431111367899999986899


Q ss_pred             EEEEEECCCCCCHH-HH--HHHCCCCCCCHHH
Q ss_conf             48852057775258-98--8641237772145
Q gi|254780791|r  242 PIISAIGHETDWTL-AD--YAADLRAPTPTGA  270 (529)
Q Consensus       242 PVisgIGHE~D~Tl-~D--~VAD~Ra~TPTaA  270 (529)
                      |+|+.|+...=.-. +=  .-+|+...+|++.
T Consensus       135 P~i~vi~g~~~gG~~~~~~~~~~~~~~~~~~~  166 (224)
T 2f9i_B          135 LYISYLTHPTTGGVSASFASVGDINLSEPKAL  166 (224)
T ss_dssp             CEEEEEEEEEEHHHHTTGGGCCSEEEECTTCB
T ss_pred             CEEEEECCCCCCCEEEEEEECCCEEEECCCCE
T ss_conf             75999826631111555430374475048608


No 416
>>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} (A:1-206)
Probab=24.00  E-value=33  Score=12.49  Aligned_cols=29  Identities=0%  Similarity=-0.057  Sum_probs=14.8

Q ss_pred             HHHHHCCHHHHHHHHH---HCCCEEEEEECCC
Q ss_conf             4422007699999997---4890488520577
Q gi|254780791|r  222 EDLWHFNDEMIVRAIA---NSSIPIISAIGHE  250 (529)
Q Consensus       222 eDL~~FN~e~laraI~---~~~iPVisgIGHE  250 (529)
                      .|...++++.+...+.   .+.-+++.++=++
T Consensus       103 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (206)
T 1qwj_A          103 ATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR  134 (206)
T ss_dssp             TTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             57776672789999999985899879999840


No 417
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=23.99  E-value=33  Score=12.48  Aligned_cols=83  Identities=14%  Similarity=0.073  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC-CC--E-EEEEEE--CCCCCCCHHHHHHHH
Q ss_conf             99999976540122610016310265289998478425899999986305-97--5-899972--100111103679999
Q gi|254780791|r  120 LEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR-FP--L-RVIIFP--VKVQGDECPKEIANA  193 (529)
Q Consensus       120 ~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r-~p--~-~~~~~p--~~vQG~~a~~~i~~a  193 (529)
                      -.+..++|.+.|+              +++++|..++....++...+... ++  + .|+..|  +.+=|++....|..|
T Consensus        38 a~e~l~~L~~~G~--------------~~~~vTN~~~~~~~~~~~~l~~~gi~~~~d~i~~sp~~~i~VGDs~~~Di~~A  103 (145)
T 1vjr_A           38 SLEFLETLKEKNK--------------RFVFFTNNSSLGAQDYVRKLRNXGVDVPDDAVVTSKERXAXVGDRLYTDVKLG  103 (145)
T ss_dssp             HHHHHHHHHHTTC--------------EEEEEESCTTSCHHHHHHHHHHTTCCCCGGGEEEHGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHCCC--------------CEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCHCHHCCCCCCCHHHHHHHH
T ss_conf             9999999997699--------------78994589989999999999851556652323458110351177817899999


Q ss_pred             HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHC
Q ss_conf             9999741003576777589995168884442200
Q gi|254780791|r  194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF  227 (529)
Q Consensus       194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~F  227 (529)
                      ...           ....|.+.+|+.+.+++-..
T Consensus       104 ~~a-----------G~~ti~v~~g~~~~~~~~~~  126 (145)
T 1vjr_A          104 KNA-----------GIVSILVLTGETTPEDLERA  126 (145)
T ss_dssp             HHH-----------TCEEEEESSSSCCHHHHHHC
T ss_pred             HHC-----------CCCEEEECCCCCCHHHHHHC
T ss_conf             987-----------99499989899997889736


No 418
>>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} (A:)
Probab=23.96  E-value=33  Score=12.48  Aligned_cols=91  Identities=12%  Similarity=0.115  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99997654012261001631026528999847842589999998630597589997210011110367999999997410
Q gi|254780791|r  122 KRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLK  201 (529)
Q Consensus       122 ~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~  201 (529)
                      .+-++|.++|.=               -++++.+...+......+....+ .+..+.+-|.-+++....++.+....   
T Consensus        17 aia~~la~~G~~---------------V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~---   77 (256)
T 1geg_A           17 AIALRLVKDGFA---------------VAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTL---   77 (256)
T ss_dssp             HHHHHHHHTTCE---------------EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHCCCE---------------EEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHHC---
T ss_conf             999999987998---------------99998989999999999985289-71378512100057789999999963---


Q ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf             03576777589995168884442200769999999
Q gi|254780791|r  202 EGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI  236 (529)
Q Consensus       202 ~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI  236 (529)
                           ..+|++|-.-|.+....++-+.+++.-+.+
T Consensus        78 -----g~iDilvnnAg~~~~~~~~~~~~~~~~~~~  107 (256)
T 1geg_A           78 -----GGFDVIVNNAGVAPSTPIESITPEIVDKVY  107 (256)
T ss_dssp             -----TCCCEEEECCCCCCCBCGGGCCHHHHHHHH
T ss_pred             -----CCCEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             -----997099989876668876779999999999


No 419
>>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} (A:1-70)
Probab=23.91  E-value=33  Score=12.47  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999999765401226100163
Q gi|254780791|r  120 LEKRKKKLLEEGLFSDQHKNP  140 (529)
Q Consensus       120 ~e~lk~~L~~eGlfd~~~k~~  140 (529)
                      -|..+++|.+.|++|.+.|..
T Consensus        12 gE~~Rr~L~~~~lld~~ykI~   32 (70)
T 2yx1_A           12 GEQTRRILIENNLLNKDYKIT   32 (70)
T ss_dssp             HHHHHHHHHHTTCBCTTSCCE
T ss_pred             HHHHHHHHHHCCCCCCCCEEE
T ss_conf             799999997694706896476


No 420
>>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} (A:)
Probab=23.89  E-value=33  Score=12.47  Aligned_cols=41  Identities=10%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             HHCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEE
Q ss_conf             73146199984898895777892999869999911099999950
Q gi|254780791|r  457 TLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVIN  500 (529)
Q Consensus       457 ~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~  500 (529)
                      .+..|. |.  -||+.++....++.||.|++.+.+-.....+..
T Consensus        22 ~i~~g~-I~--VNg~~~~~~~~v~~gD~i~i~~~~~~~~~~~~~   62 (92)
T 2k6p_A           22 MCNVGA-VW--LNGSCAKASKEVKAGDTISLHYLKGIEEYTILQ   62 (92)
T ss_dssp             HHHHTC-CE--ETTEECCTTCBCCTTCEEEECCSSCCEEEEECC
T ss_pred             HHHCCC-EE--ECCEEEEECCCCCCCCEEEEEECCCCEEEEEEE
T ss_conf             998997-99--898998662471899999998489636899997


No 421
>>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231)
Probab=23.88  E-value=33  Score=12.47  Aligned_cols=131  Identities=11%  Similarity=0.009  Sum_probs=75.1

Q ss_pred             EEEEEEEEEEC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-E---
Q ss_conf             79999971016---8007999999999976540122610016310265289998478425899999986305975-8---
Q gi|254780791|r  101 YQIIIESLIPS---GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-R---  173 (529)
Q Consensus       101 ~ql~v~~i~~~---g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~---  173 (529)
                      +.+++.+++-.   ..+.+.....+..++|.+.|+              .++|+|+.+...+.+++..+.-..++ .   
T Consensus         3 ~k~i~~D~DgTl~~~~~~l~~~~~e~l~~l~~~Gi--------------~~~i~Tgr~~~~~~~~l~~~~~~~~~i~~nG   68 (162)
T 1wr8_A            3 IKAISIDIDGTITYPNRMIHEKALEAIRRAESLGI--------------PIMLVTGNTVQFAEAASILIGTSGPVVAEDG   68 (162)
T ss_dssp             CCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTC--------------CEEEECSSCHHHHHHHHHHHTCCSCEEEGGG
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC--------------EEEEEECCCCCCCHHHHHHCCCCCCEEEECC
T ss_conf             45999966778828989469999999999985799--------------0999935750010224553277675275157


Q ss_pred             -EEEEECCCCC-CC-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             -9997210011-11-03679999999974100357677758999516888444220076999999974890488520577
Q gi|254780791|r  174 -VIIFPVKVQG-DE-CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE  250 (529)
Q Consensus       174 -~~~~p~~vQG-~~-a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE  250 (529)
                       .+..+-.+.= .- --.++++.|......      ..-+++.++   -+..|+      ..   ...+.++|..+-++.
T Consensus        69 ~~i~~~~~~~~~~p~~K~~~i~~l~~~~~~------~~~~~~~iG---D~~nD~------~~---~~~a~~~~a~~~~~~  130 (162)
T 1wr8_A           69 GAISYKKKRIFLASINKGSGIEKASEFLGI------KPKEVAHVG---DGENDL------DA---FKVVGYKVAVAQAPK  130 (162)
T ss_dssp             TEEEETTEEEESCCCCHHHHHHHHHHHHTS------CGGGEEEEE---CSGGGH------HH---HHHSSEEEECTTSCH
T ss_pred             CEEEECCCEEEEECCCCCHHHHHHHHHHCC------CHHHEEECC---CCHHHH------HH---HHHCCEEEEECCCCH
T ss_conf             323314531243116880333102244034------777803105---886379------99---996890899689889


Q ss_pred             CCCHHHHHHHCCCCCCC
Q ss_conf             75258988641237772
Q gi|254780791|r  251 TDWTLADYAADLRAPTP  267 (529)
Q Consensus       251 ~D~Tl~D~VAD~Ra~TP  267 (529)
                      .    +.-.||.-.+++
T Consensus       131 ~----~~~~a~~v~~~~  143 (162)
T 1wr8_A          131 I----LKENADYVTKKE  143 (162)
T ss_dssp             H----HHTTCSEECSSC
T ss_pred             H----HHHHCCEEECCC
T ss_conf             9----998599998999


No 422
>>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:92-305)
Probab=23.84  E-value=33  Score=12.46  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=17.0

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEE
Q ss_conf             8999847842589999998630597-5899972
Q gi|254780791|r  147 IIAVITSPTGAVIRDILQRISCRFP-LRVIIFP  178 (529)
Q Consensus       147 ~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p  178 (529)
                      +||+..+-....+-+++..+.+.|| +++.++.
T Consensus         4 rIg~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~   36 (214)
T 3fxq_A            4 TFAASPAIALAALPLALASFAREFPDVTVNVRD   36 (214)
T ss_dssp             EEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             996256216878999999999978997787774


No 423
>>2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein A; putative protein, molybdenum cofactor, structural genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5} (A:)
Probab=23.84  E-value=33  Score=12.46  Aligned_cols=16  Identities=6%  Similarity=0.007  Sum_probs=6.5

Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             1111036799999999
Q gi|254780791|r  182 QGDECPKEIANAILQL  197 (529)
Q Consensus       182 QG~~a~~~i~~ai~~~  197 (529)
                      .+.+....+..+...+
T Consensus        80 ~~~g~~~~i~~~~~~~   95 (201)
T 2e8b_A           80 EESASIIGLYTALKHA   95 (201)
T ss_dssp             SSCCHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHH
T ss_conf             2234057787666651


No 424
>>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358)
Probab=23.81  E-value=33  Score=12.46  Aligned_cols=26  Identities=12%  Similarity=0.291  Sum_probs=17.4

Q ss_pred             EEEEEECCCCCCCCCC-EEEEEEECCC
Q ss_conf             9999970543568886-2799987489
Q gi|254780791|r   36 CVRGEISGYRGIHSSG-HAYFSLKDNH   61 (529)
Q Consensus        36 ~v~gEis~~~~~~~sG-H~Yf~lkd~~   61 (529)
                      .+..=|.+|.....|| |+.|+|.|+.
T Consensus        24 ~~~~~~~~~~~~~GSG~H~H~SL~~~g   50 (168)
T 2j9i_A           24 LLSAFIADFAAAAGAGSHSIWDVGAAG   50 (168)
T ss_dssp             ECCEECCCCTTSCCCBCCEEECEEETT
T ss_pred             EEEEEEEEECCCCCCCEEEEEECCCCC
T ss_conf             876316788212334427999534899


No 425
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305)
Probab=23.77  E-value=33  Score=12.45  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=49.4

Q ss_pred             CCEEEEEECCCH-HHHHHHHHHHH---HCCCEEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             528999847842-58999999863---059758999-7210011110367999999997410035767775899951688
Q gi|254780791|r  145 PKIIAVITSPTG-AVIRDILQRIS---CRFPLRVII-FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       145 p~~i~vits~~~-a~~~D~~~~~~---~r~p~~~~~-~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      ..+||+|+...+ --+..+++-+.   +..++++.+ +++  +  +-...-+++|+.+-..       .+|.|||.=...
T Consensus         4 s~~I~viv~~~~~~f~~~v~~Gie~aa~~~G~~~~~~~~~--~--~d~~~q~~~ie~li~~-------~vdGIii~p~d~   72 (171)
T 3g1w_A            4 NETYXXITFQSGXDYWKRCLKGFEDAAQALNVTVEYRGAA--Q--YDIQEQITVLEQAIAK-------NPAGIAISAIDP   72 (171)
T ss_dssp             -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECS--S--SCHHHHHHHHHHHHHH-------CCSEEEECCSST
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--C--CCHHHHHHHHHHHHHC-------CCCEEEEECCCH
T ss_conf             8869999789998299999999999999729979999799--9--9999999999999977-------999999967873


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             844422007699999997489048852
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                      ..       ....++.+.+..||||+-
T Consensus        73 ~~-------~~~~i~~a~~~gIPVV~i   92 (171)
T 3g1w_A           73 VE-------LTDTINKAVDAGIPIVLF   92 (171)
T ss_dssp             TT-------THHHHHHHHHTTCCEEEE
T ss_pred             HH-------HHHHHHHHHHCCCCEEEE
T ss_conf             77-------899999999869929998


No 426
>>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} (A:17-217)
Probab=23.72  E-value=33  Score=12.44  Aligned_cols=29  Identities=17%  Similarity=0.188  Sum_probs=9.9

Q ss_pred             HHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             99999974890488520577752589886
Q gi|254780791|r  231 MIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       231 ~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                      ++++.++...+.||||-|.=.|.-..+-+
T Consensus        44 ~lg~~la~~g~~vvsGg~~Gvm~aa~~~a   72 (201)
T 1wek_A           44 RLGRALAEAGFGVVTGGGPGVXEAVNRGA   72 (201)
T ss_dssp             HHHHHHHHHTCEEEECSCSHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEECCCCHHHHHHHHHH
T ss_conf             99999985873799667811777988656


No 427
>>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} (A:)
Probab=23.70  E-value=33  Score=12.44  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=46.2

Q ss_pred             CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             10265289998478425899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r  141 IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       141 lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      -+....+|+||.=..+- .+.|.+.+.++. +.+.++|...--           ..++..       .+|.||+.=|.+|
T Consensus        20 ~~~~~~~i~iid~~~~~-~~~i~~~l~~~g-~~~~i~~~~~~~-----------~~~~~~-------~~dGiii~Gg~~~   79 (218)
T 2vpi_A           20 FQSMEGAVVILDAGAQY-GKVIDRRVRELF-VQSEIFPLETPA-----------FAIKEQ-------GFRAIIISGGPNS   79 (218)
T ss_dssp             ---CTTCEEEEECSTTT-THHHHHHHHHTT-CCEEEECTTCCH-----------HHHHHH-------TCSEEEEEC----
T ss_pred             CCCCCCCEEEEECCCHH-HHHHHHHHHHCC-CEEEEECCCCCH-----------HHHHHC-------CCCEEEEECCCCC
T ss_conf             01488989999898459-899999977459-569998899999-----------999851-------9988999589988


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf             444220076999999974890488
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPII  244 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVi  244 (529)
                      ..|.   .+-.+.+......+||+
T Consensus        80 ~~d~---~~~~~i~~~~~~~~PiL  100 (218)
T 2vpi_A           80 VYAE---DAPWFDPAIFTIGKPVL  100 (218)
T ss_dssp             --------CCCCCGGGGTSSCCEE
T ss_pred             CCCC---CCCCCCHHHHHCCCCEE
T ss_conf             5434---46431266662597378


No 428
>>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289)
Probab=23.68  E-value=33  Score=12.44  Aligned_cols=95  Identities=13%  Similarity=-0.042  Sum_probs=51.4

Q ss_pred             CCCEEEEEECCCHHHHHHHHHH----HHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             6528999847842589999998----630597-58999721001111036799999999741003576777589995168
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQR----ISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~----~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      -.++|++|+.+.+..-.+-+.-    +++..+ ..+..    +.++....+-..++..+-...     +.+|+|+.    
T Consensus        18 g~~~i~~i~g~~~~~~~~R~~Gf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-----~~~~ai~~----   84 (133)
T 1jx6_A           18 KHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSA----YYTKATKQSGYDAAKASLAKH-----PDVDFIYA----   84 (133)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEE----ECCCSSHHHHHHHHHHHHHHC-----CCCSEEEE----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEE----EECCCCHHHHHHHHHHHHHCC-----CCCCEEEE----
T ss_conf             97479981599985699999999999986327885159----837999999999999975425-----66623574----


Q ss_pred             CCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             8844422007699---9999974890488520577752589886
Q gi|254780791|r  219 GSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       219 GS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                              .||..   +.+++.+...-=|.-||+.-+-....++
T Consensus        85 --------~~d~~a~g~~~al~~~g~~~i~ivg~D~~~~~~~~i  120 (133)
T 1jx6_A           85 --------CSTDVALGAVDALAELGREDIMINGWGGGSAELDAI  120 (133)
T ss_dssp             --------SSHHHHHHHHHHHHHHTCTTSEEBCSBCCHHHHHHH
T ss_pred             --------CCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHH
T ss_conf             --------375999999999987489882898168989999986


No 429
>>2qyw_A Vesicle transport through interaction with T- snares 1B homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V (A:)
Probab=23.47  E-value=34  Score=12.41  Aligned_cols=14  Identities=29%  Similarity=0.304  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             67776699999888
Q gi|254780791|r  279 EHLQSSLINLEARL  292 (529)
Q Consensus       279 ~EL~~~L~~l~~RL  292 (529)
                      ....+++..+.+-+
T Consensus        18 e~YE~~f~~l~a~i   31 (102)
T 2qyw_A           18 EKLHEIFRGLLEDL   31 (102)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             88999999999999


No 430
>>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis} (A:)
Probab=23.43  E-value=17  Score=15.00  Aligned_cols=72  Identities=8%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             CEEEEEEECCCCCCCC-CCEEEEEEECCCC-EEEEEEECCCCC--CCCCCCCCCCEEEEEEEEEEECCCC---EEEEEEE
Q ss_conf             1899999705435688-8627999874894-799999735210--5866814598899999966752884---3799999
Q gi|254780791|r   34 HVCVRGEISGYRGIHS-SGHAYFSLKDNHS-RIDAIIWKGTLN--KIEFLPEEGIEFLVIGKITTFPGSS---KYQIIIE  106 (529)
Q Consensus        34 ~~~v~gEis~~~~~~~-sGH~Yf~lkd~~a-~i~~~~~~~~~~--~~~~~~~~G~~v~~~g~~~~y~~~g---~~ql~v~  106 (529)
                      .+.|.-+|.|-...+- -....|.|.|.+. +...........  .....+..|.++  .|.+-|=.|.+   .|.|...
T Consensus        48 fv~v~vtv~N~g~~~~~~~~~~f~l~d~dg~~y~~~~~~~~~~~~~~~~~L~PG~~~--~G~ivFeVPk~~~~~~~L~y~  125 (159)
T 3cfu_A           48 RLIIEVTXENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILXGGTLVSGKKV--TGVLSYVIPKGEQKHYTLVYN  125 (159)
T ss_dssp             EEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEE--EEEEEEEESTTCGGGCEEEEC
T ss_pred             EEEEEEEEEECCCCCEEECCCEEEEEECCCCEECCCEEECCCCCEEEEEEECCCCEE--EEEEEEEECCCCCCEEEEEEE
T ss_conf             999999999788886785254189992799795231610367760522464799888--999999957999731899980


Q ss_pred             E
Q ss_conf             7
Q gi|254780791|r  107 S  107 (529)
Q Consensus       107 ~  107 (529)
                      .
T Consensus       126 ~  126 (159)
T 3cfu_A          126 P  126 (159)
T ss_dssp             H
T ss_pred             C
T ss_conf             0


No 431
>>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:1-122,A:256-317)
Probab=23.36  E-value=34  Score=12.39  Aligned_cols=108  Identities=17%  Similarity=0.110  Sum_probs=58.8

Q ss_pred             CCCEEEEEECCCHH--HH--HHHHHHHH---H-------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             65289998478425--89--99999863---0-------59758999721001111036799999999741003576777
Q gi|254780791|r  144 IPKIIAVITSPTGA--VI--RDILQRIS---C-------RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       144 ~p~~i~vits~~~a--~~--~D~~~~~~---~-------r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      -|-+||++.+.+|.  ++  ..+.+-++   +       .++++++++...-....|..   .+-+.+..         -
T Consensus         3 ~~i~IG~~~p~SG~~a~~~G~~~~~g~~lAv~~iNggi~G~~ielv~~D~~~~~~~a~~---~a~~li~~---------~   70 (184)
T 3i09_A            3 DSVKIGFITDXSGLYADIDGQGGLEAIKXAVADFGGKVNGKPIEVVYADHQNKADIAAS---KAREWXDR---------G   70 (184)
T ss_dssp             SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHH---HHHHHHHH---------S
T ss_pred             CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHH---HHHHHHHC---------C
T ss_conf             87699998078774302288899999999999967987997889999559999899999---99999962---------8


Q ss_pred             CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH---HHHHHCCCC-CCCHH
Q ss_conf             5899951688844422007699999997489048852057775258---988641237-77214
Q gi|254780791|r  210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL---ADYAADLRA-PTPTG  269 (529)
Q Consensus       210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl---~D~VAD~Ra-~TPTa  269 (529)
                      .|.+|+=+.+|-.      -..++.......+|+|+.-....+.|-   -+++-.+++ +||..
T Consensus        71 ~v~~iiG~~~S~~------~~a~~~~~~~~~vp~i~~~a~~~~l~~~~~~~~~fr~~~~~~~~~  128 (184)
T 3i09_A           71 GLDLLVGGTNSAT------ALSXNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYNRDQAS  128 (184)
T ss_dssp             CEEEEEECSCHHH------HHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCTSSHHH
T ss_pred             CCEEEEEECCCHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH
T ss_conf             9769995055167------778777887608753344445532346677763344146124567


No 432
>>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} (A:1-25,A:210-450)
Probab=23.34  E-value=34  Score=12.39  Aligned_cols=55  Identities=13%  Similarity=0.049  Sum_probs=29.1

Q ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf             5899972100111103679999999974100357677758999516888444220076999999
Q gi|254780791|r  172 LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA  235 (529)
Q Consensus       172 ~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara  235 (529)
                      ..+..+.+-|--   .+++.+++..+..      ...+|+++..=|+.....++-++.+..-+.
T Consensus        95 ~~v~~~~~Dvs~---~~~~~~~~~~~~~------~~~i~~vi~nag~~~~~~~~~~~~~~~~~~  149 (266)
T 2fr1_A           95 ARTTVAACDVTD---RESVRELLGGIGD------DVPLSAVFHAAATLDDGTVDTLTGERIERA  149 (266)
T ss_dssp             CEEEEEECCTTC---HHHHHHHHHTSCT------TSCEEEEEECCCCCCCCCGGGCCHHHHHHH
T ss_pred             CEEEEEEEECCC---HHHHHHHHHHHHH------HCCCEEEEEECCCCCCCCHHHCCHHHHHHH
T ss_conf             738999534789---8999999999997------488129998677456763011138899999


No 433
>>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} (A:)
Probab=23.34  E-value=34  Score=12.39  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=50.9

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      -+.||-||-..  +....++...-..+++++....          +-..|+..+...       .||+||+-      ..
T Consensus         7 ~~~rvLiVDd~--~~~~~~l~~~l~~~G~~v~~a~----------~~~~Al~~l~~~-------~~dlillD------~~   61 (147)
T 2zay_A            7 KWWRIMLVDTQ--LPALAASISALSQEGFDIIQCG----------NAIEAVPVAVKT-------HPHLIITE------AN   61 (147)
T ss_dssp             -CEEEEEECTT--GGGGHHHHHHHHHHTEEEEEES----------SHHHHHHHHHHH-------CCSEEEEE------SC
T ss_pred             CCCEEEEEECC--HHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEEE------CC
T ss_conf             99889999799--9999999999998799999988----------889999998604-------77788750------44


Q ss_pred             HHHCCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf             220076999999974----890488520577752
Q gi|254780791|r  224 LWHFNDEMIVRAIAN----SSIPIISAIGHETDW  253 (529)
Q Consensus       224 L~~FN~e~laraI~~----~~iPVisgIGHE~D~  253 (529)
                      |=-.|-.++++.|-+    ..+|||-=-|+..+.
T Consensus        62 mp~~dG~~l~~~ir~~~~~~~iPii~ls~~~~~~   95 (147)
T 2zay_A           62 MPKISGMDLFNSLKKNPQTASIPVIALSGRATAK   95 (147)
T ss_dssp             CSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHH
T ss_conf             0356767899999838023899689981789999


No 434
>>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} (B:119-258)
Probab=23.20  E-value=34  Score=12.37  Aligned_cols=114  Identities=12%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEECCC-HHHH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCC
Q ss_conf             02652899984784-2589-99999863059758999721001111036799999999741003576777589995-168
Q gi|254780791|r  142 PFIPKIIAVITSPT-GAVI-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA-RGG  218 (529)
Q Consensus       142 P~~p~~i~vits~~-~a~~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~-RGG  218 (529)
                      |.-+.+|-+.|.++ .-.+ -.++..+-+..+++++.....+    .+.++++++...          ++|+|.|. .-+
T Consensus         2 ~~~~~~vl~~~~~gd~H~lG~~~va~~lr~~G~~V~~lG~~~----p~~~l~~~~~~~----------~~d~V~lS~~~~   67 (140)
T 2i2x_B            2 PKTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDV----PAEEVLAAVQKE----------KPIMLTGTALMT   67 (140)
T ss_dssp             CCCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEEC----CSHHHHHHHHHH----------CCSEEEEECCCT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEECCC
T ss_conf             565430466314886766899999999997799089658889----879999999971----------788598652345


Q ss_pred             CCHHHHHHCCHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             884442200769999999748--90488520577752589886412377721456763
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIANS--SIPIISAIGHETDWTLADYAADLRAPTPTGAAEMA  274 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~~--~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla  274 (529)
                      .+..+.     ..+++.+-+.  .+||+.|=|.-+..-...+=+|.-++..+.+.+.+
T Consensus        68 ~~~~~~-----~~~~~~lr~~~~~~~v~vGG~~~~~~~~~~~g~d~~~~~~~~~~~~~  120 (140)
T 2i2x_B           68 TTMYAF-----KEVNDMLLENGIKIPFACGGGAVNQDFVSQFALGVYGEEAADAPKIA  120 (140)
T ss_dssp             TTTTHH-----HHHHHHHHTTTCCCCEEEESTTCCHHHHHTSTTEEECSSTTHHHHHH
T ss_pred             CCHHHH-----HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCEECCCHHHHHHHH
T ss_conf             325889-----99999998469997399889869999999829884717999999999


No 435
>>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} (A:1-157,A:293-328)
Probab=23.20  E-value=34  Score=12.37  Aligned_cols=103  Identities=18%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CCCCCCCC-CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             00163102-65289998478425899999986305975899-972---10011110367999999997410035767775
Q gi|254780791|r  136 QHKNPIPF-IPKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFP---VKVQGDECPKEIANAILQLNTLKEGRTCPRPD  210 (529)
Q Consensus       136 ~~k~~lP~-~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p---~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D  210 (529)
                      +.+++.|. -.+.|+.+=-.+|-=-+==-.....+-+..++ +-+   +...|.+...+   ....+..+        +|
T Consensus        34 ~~~~~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~vi~l~~~~~s~~~~~Esi~D---ta~vls~y--------~D  102 (193)
T 3grf_A           34 NPAKYTARAANKTLLAFFAKPSLRTRVSLETAMTRLGGHAIYYELGANSNVGGKETVQD---TAEVFSRM--------VD  102 (193)
T ss_dssp             CGGGGTTTTTTCEEEEEESSCCHHHHHHHHHHHHHHTCEEEEEEC----------CHHH---HHHHHTTT--------CS
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCHHHCCCCCHHHHH---HHHHHHCC--------CC
T ss_conf             73445656689889999668971079999999998599889877531111577526999---99998333--------76


Q ss_pred             EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE-ECCC-CCCHHHHHH
Q ss_conf             899951688844422007699999997489048852-0577-752589886
Q gi|254780791|r  211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA-IGHE-TDWTLADYA  259 (529)
Q Consensus       211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg-IGHE-~D~Tl~D~V  259 (529)
                      + |++|+         |++..+-.....+.+|||.| -||+ .=-.|+|+-
T Consensus       103 ~-iviR~---------~~~~~~~~~a~~s~vPVINag~g~~HPtQaLaDl~  143 (193)
T 3grf_A          103 I-CTARL---------ATKEMMREMAQHASVPCINALDDFGHPLQMVCDFM  143 (193)
T ss_dssp             E-EEEEC---------SSHHHHHHHHHHCSSCEEESSCSSCCHHHHHHHHH
T ss_pred             E-EEEEC---------CCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf             5-66640---------20212788764178614637643247999999899


No 436
>>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} (A:)
Probab=23.08  E-value=34  Score=12.35  Aligned_cols=33  Identities=9%  Similarity=0.098  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999999999999999999999999999988716
Q gi|254780791|r  420 IKKLITRIEFILSHKIKSCHTSVSITTRILQSF  452 (529)
Q Consensus       420 l~~l~~rL~~~~~~~L~~~~~rL~~l~~~L~sl  452 (529)
                      .......|..-+...|..++.++..+.++|...
T Consensus       201 k~~~E~~L~~KF~~lLNeKK~KIR~L~~~L~~a  233 (246)
T 1z56_A          201 LETRDERTRAMMVTLLNEKKKKIRELHEILRQN  233 (246)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHHHGGGTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998899999999999717789999999999975


No 437
>>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} (A:1-131)
Probab=22.94  E-value=34  Score=12.33  Aligned_cols=83  Identities=19%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      .||-||  .+......+++.+=..|++.+....          +--+|++.+...       .||+||+=      -.|=
T Consensus         8 ~~ILiV--dDd~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~~~~~-------~~dliilD------~~lp   62 (131)
T 1ys7_A            8 PRVLVV--DDDSDVLASLERGLRLSGFEVATAV----------DGAEALRSATEN-------RPDAIVLD------INMP   62 (131)
T ss_dssp             CEEEEE--CSCHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEEE------SSCS
T ss_pred             CEEEEE--ECCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCEEEEEE------ECCC
T ss_conf             879999--7999999999999997899999989----------999999999858-------98299973------0233


Q ss_pred             HCCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf             0076999999974----890488520577752
Q gi|254780791|r  226 HFNDEMIVRAIAN----SSIPIISAIGHETDW  253 (529)
Q Consensus       226 ~FN~e~laraI~~----~~iPVisgIGHE~D~  253 (529)
                      ..|-.++++.+-.    .|++++|+.+...+.
T Consensus        63 ~~~g~e~~~~ir~~~~~~~ii~~t~~~~~~~~   94 (131)
T 1ys7_A           63 VLDGVSVVTALRAMDNDVPVCVLSARSSVDDR   94 (131)
T ss_dssp             SSCHHHHHHHHHHTTCCCCEEEEECCCTTTCC
T ss_pred             CCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHH
T ss_conf             33322210010014553331235578999999


No 438
>>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95)
Probab=22.88  E-value=26  Score=13.35  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=27.7

Q ss_pred             ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             5168884442200769999999748904885205777525898864123
Q gi|254780791|r  215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR  263 (529)
Q Consensus       215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R  263 (529)
                      .+|.||++++..=+.++|+.         |-|||-.+=-.|.++.++.+
T Consensus        53 ~~~~~s~e~i~~As~e~L~~---------i~Gig~~~A~~I~~~~~~~~   92 (95)
T 1pzn_A           53 EAGYDTLEAIAVASPIELKE---------VAGISEGTALKIIQAARKAA   92 (95)
T ss_dssp             TTTCCSHHHHHTCCHHHHHH---------HHCCCHHHHHHHHHHHHHHC
T ss_pred             HCCCCCHHHHHHCCHHHHHH---------HHCCCHHHHHHHHHHHHHHC
T ss_conf             85997199998289999997---------54989999999999998733


No 439
>>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} (A:1-220)
Probab=22.80  E-value=35  Score=12.31  Aligned_cols=11  Identities=18%  Similarity=0.151  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99997654012
Q gi|254780791|r  122 KRKKKLLEEGL  132 (529)
Q Consensus       122 ~lk~~L~~eGl  132 (529)
                      ++.+.|.+-|+
T Consensus       118 ~l~~~l~~~g~  128 (220)
T 2i0k_A          118 AIVTELQKHDL  128 (220)
T ss_dssp             HHHHHHHHTTE
T ss_pred             HHHHHHHHCCC
T ss_conf             99999985366


No 440
>>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240)
Probab=22.75  E-value=35  Score=12.30  Aligned_cols=122  Identities=13%  Similarity=0.138  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999976540122610016310265289998478425899999986305975899972100111103679999999974
Q gi|254780791|r  120 LEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNT  199 (529)
Q Consensus       120 ~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~  199 (529)
                      ..++.++|.+.|+              +++|+|+......+.+++..-..+...++-.....+++-.+..+..++++.+-
T Consensus        27 v~e~L~~Lk~~G~--------------~l~i~Tn~~~~~~~~~l~~~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~g~   92 (152)
T 2hi0_A           27 ILDLXKNLRQKGV--------------KLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIRRKPAPDXTSECVKVLGV   92 (152)
T ss_dssp             HHHHHHHHHHTTC--------------EEEEEEEEEHHHHHHHHHHHSTTTCSEEEEECTTSCCTTSSHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCC--------------CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             4689999864124--------------52113567367889998751111010101122345443321001457987197


Q ss_pred             HCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEE-EEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             100357677758999516888444220076999999974890488-520577752589886412377721456763
Q gi|254780791|r  200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPII-SAIGHETDWTLADYAADLRAPTPTGAAEMA  274 (529)
Q Consensus       200 ~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVi-sgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla  274 (529)
                      ..       -++++|+            |...=+++--++.++.| ..=|+..-.-+..+=+|.-..+|....+++
T Consensus        93 ~p-------~~~i~VG------------D~~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~pd~ii~s~~el~~~l  149 (152)
T 2hi0_A           93 PR-------DKCVYIG------------DSEIDIQTARNSEXDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEEAI  149 (152)
T ss_dssp             CG-------GGEEEEE------------SSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCCCEECSHHHHHHHH
T ss_pred             CC-------CCCEECC------------CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCHHHHHHHH
T ss_conf             51-------2211026------------887789999986994999888989878897689999989999999985


No 441
>>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} (A:)
Probab=22.74  E-value=35  Score=12.30  Aligned_cols=98  Identities=12%  Similarity=0.078  Sum_probs=51.6

Q ss_pred             CCCCCCEEEEEECCCHHHHHHHH-HHHHH-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf             10265289998478425899999-98630-59758999721001111036799999999741003576777589995168
Q gi|254780791|r  141 IPFIPKIIAVITSPTGAVIRDIL-QRISC-RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG  218 (529)
Q Consensus       141 lP~~p~~i~vits~~~a~~~D~~-~~~~~-r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG  218 (529)
                      ++.-+.+|-||--.  .....++ +.+++ .+.++|.....          -.+|+..+..... .....||+|++=-  
T Consensus         3 ~~~~~~~ILiVdDd--~~~~~~i~~~L~~~g~~~~v~~a~~----------g~~al~~l~~~~~-~~~~~pdlIilD~--   67 (143)
T 2qvg_A            3 LAADKVDILYLEDD--EVDIQSVERVFHKISSLIKIEIAKS----------GNQALDXLYGRNK-ENKIHPKLILLDI--   67 (143)
T ss_dssp             ----CCSEEEECCC--HHHHHHHHHHHHHHCTTCCEEEESS----------HHHHHHHHHTCTT-CCCCCCSEEEEET--
T ss_pred             CCCCCCEEEEEECC--HHHHHHHHHHHHHCCCCEEEEEECC----------HHHHHHHHHHHHH-HCCCCCCEEEECC--
T ss_conf             88888989999799--9999999999997599749999778----------2899999971103-2147888899728--


Q ss_pred             CCHHHHHHCCHHHHHHHHHH----CCCEEE--EEECCCCCCHHHH
Q ss_conf             88444220076999999974----890488--5205777525898
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIAN----SSIPII--SAIGHETDWTLAD  257 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~~----~~iPVi--sgIGHE~D~Tl~D  257 (529)
                          .|=--|-.++++.|-+    .++|||  ||-|.+.|..-+-
T Consensus        68 ----~mP~~dG~el~~~ir~~~~~~~~pviils~~~~~~~~~~~~  108 (143)
T 2qvg_A           68 ----NIPKXNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFE  108 (143)
T ss_dssp             ----TCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHT
T ss_pred             ----CCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             ----88897579999999857666899399997879999999999


No 442
>>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} (A:55-65,A:336-502)
Probab=22.72  E-value=35  Score=12.29  Aligned_cols=66  Identities=9%  Similarity=0.019  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCH
Q ss_conf             999999976540122610016310265289998478425899999986305-97589997210011110
Q gi|254780791|r  119 ALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR-FPLRVIIFPVKVQGDEC  186 (529)
Q Consensus       119 ~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r-~p~~~~~~p~~vQG~~a  186 (529)
                      .-..++++|.+-|.|...-  +-|..|--+.-+.-.++--+.|+.+.+.++ |.+..+.||..+++...
T Consensus        26 ~a~yl~~~L~~~~~~~i~~--~~~~~~vv~~~~~~~~~~~~~~i~~~L~~~G~~~~~~~~P~~~~~~~~   92 (178)
T 3hbx_A           26 NMIVLREGLEKTERFNIVS--KDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITV   92 (178)
T ss_dssp             HHHHHHHHHHTTTCEEECS--CSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEE
T ss_pred             HHHHHHHHHHHCCCEEEEE--CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCEE
T ss_conf             9999999997489959982--799840899974799887899999999985987415778986456357


No 443
>>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} (A:62-304)
Probab=22.69  E-value=35  Score=12.29  Aligned_cols=98  Identities=10%  Similarity=-0.043  Sum_probs=58.0

Q ss_pred             CEEEEEEECCC----CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHCCH----HHHHHHHH
Q ss_conf             75899972100----1111036799999999741003576777589995168884-----44220076----99999997
Q gi|254780791|r  171 PLRVIIFPVKV----QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHFND----EMIVRAIA  237 (529)
Q Consensus       171 p~~~~~~p~~v----QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~FN~----e~laraI~  237 (529)
                      |+-|+.....+    .|..+..-++++++.+++.+       .-+|.++-.||..     |-++.+-.    -.-.....
T Consensus        45 ~v~via~d~~~~gGs~~~~~~~K~~r~~~~a~~~~-------iPlv~l~dt~G~~~~~~~e~~~~~~~~~~~~~~~~~~~  117 (243)
T 1pix_A           45 WCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-------VPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELN  117 (243)
T ss_dssp             EEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-------CCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC-------CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999986821150878789899999999999829-------99899955788766651344100545649999999984


Q ss_pred             HCCCEEEEEECCCCCCH--HHHHHHCCCCCCCHHHHHHHC
Q ss_conf             48904885205777525--898864123777214567633
Q gi|254780791|r  238 NSSIPIISAIGHETDWT--LADYAADLRAPTPTGAAEMAV  275 (529)
Q Consensus       238 ~~~iPVisgIGHE~D~T--l~D~VAD~Ra~TPTaAAElav  275 (529)
                      .+.+|+|+.|--..=--  ..=..+|....+|++.--++-
T Consensus       118 ~~~vp~i~vv~g~~~gg~a~~~~~~d~~~~~~~a~i~~~g  157 (243)
T 1pix_A          118 QLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGG  157 (243)
T ss_dssp             HTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCC
T ss_pred             CCCCCEEEECCCCCCCCCCHHHHHCEEEEEECCEEEEECC
T ss_conf             6998567503578676420110002168872443799507


No 444
>>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} (A:)
Probab=22.55  E-value=34  Score=12.38  Aligned_cols=10  Identities=40%  Similarity=0.594  Sum_probs=4.7

Q ss_pred             CCEEEEEEEC
Q ss_conf             8627999874
Q gi|254780791|r   50 SGHAYFSLKD   59 (529)
Q Consensus        50 sGH~Yf~lkd   59 (529)
                      .|+.||.|||
T Consensus        73 ~gk~y~~Lk~   82 (82)
T 1nha_A           73 NDKMHFSLKE   82 (82)
T ss_dssp             TTEEEEECCC
T ss_pred             CCEEEEEECC
T ss_conf             7804887349


No 445
>>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis} (A:1-111)
Probab=22.50  E-value=16  Score=15.33  Aligned_cols=33  Identities=24%  Similarity=0.470  Sum_probs=23.5

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCC
Q ss_conf             89999970543568886279998748947999997352
Q gi|254780791|r   35 VCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGT   72 (529)
Q Consensus        35 ~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~   72 (529)
                      +..-|-.|||......-|+|||     +.+.+++|.-.
T Consensus        25 Ll~pg~~sny~~~~~~nhvYfT-----~~ld~A~wgAE   57 (111)
T 2hw2_A           25 RLVPGRESNFEAGRIMNHIYIT-----QTLDAAVWGAE   57 (111)
T ss_dssp             CCTTCEECSCCBCSSSTTCBCS-----CEEEESBHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEE-----EEEEECCCCHH
T ss_conf             7776540478634567675235-----79985143057


No 446
>>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} (A:)
Probab=22.42  E-value=35  Score=12.25  Aligned_cols=95  Identities=18%  Similarity=0.136  Sum_probs=57.8

Q ss_pred             CCCCEEEEEECCCHHHHHHH-----HHHHHHC-CC-EEEEE--EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf             26528999847842589999-----9986305-97-58999--7210011110367999999997410035767775899
Q gi|254780791|r  143 FIPKIIAVITSPTGAVIRDI-----LQRISCR-FP-LRVII--FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII  213 (529)
Q Consensus       143 ~~p~~i~vits~~~a~~~D~-----~~~~~~r-~p-~~~~~--~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii  213 (529)
                      .-|.|||||.|.=-.-+-|=     +..+++. .+ .++.+  .|-.+       ||--+++.+-+..      +||.+|
T Consensus         9 ~~~~riaIV~s~fn~~i~~~ll~ga~~~l~~~g~~~~~i~v~~VPGa~-------EiP~a~~~l~~s~------~~davI   75 (157)
T 2obx_A            9 YETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAY-------EIPLHARTLAETG------RYGAVL   75 (157)
T ss_dssp             CCCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGG-------GHHHHHHHHHHHT------CCSEEE
T ss_pred             CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH-------HHHHHHHHHHHCC------CCCEEE
T ss_conf             778989999802879999999999999999859974465799957788-------8899999998513------666488


Q ss_pred             ----EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             ----95168884442200-76999999974890488520577
Q gi|254780791|r  214 ----LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIGHE  250 (529)
Q Consensus       214 ----i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIGHE  250 (529)
                          |+||+=.--|..|= =...|.+.=....+||+.||=+.
T Consensus        76 aLG~VIrG~T~H~~~V~~~v~~gl~~v~l~~~~PV~~GvLt~  117 (157)
T 2obx_A           76 GTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTP  117 (157)
T ss_dssp             EEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEEECB
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             888776488627689999999999999732499679996587


No 447
>>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* (C:162-204)
Probab=22.38  E-value=35  Score=12.24  Aligned_cols=27  Identities=15%  Similarity=0.331  Sum_probs=20.0

Q ss_pred             EECCCCCHHH-HHHCCHHHHHHHHHHCC
Q ss_conf             9516888444-22007699999997489
Q gi|254780791|r  214 LARGGGSIED-LWHFNDEMIVRAIANSS  240 (529)
Q Consensus       214 i~RGGGS~eD-L~~FN~e~laraI~~~~  240 (529)
                      |..|.+..++ -+||||+++...+...+
T Consensus         5 v~~gk~~~~~~~Y~y~d~El~~~l~~~~   32 (43)
T 3k9f_C            5 MSKGKGKKEEVAYAWTDGELEELRKQFG   32 (43)
T ss_dssp             EEC-CGGGCCEEEECSHHHHHHHHHHSC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9854653045776651146799999837


No 448
>>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} (A:1520-1661)
Probab=22.19  E-value=35  Score=12.21  Aligned_cols=70  Identities=11%  Similarity=0.159  Sum_probs=43.1

Q ss_pred             EEEEEEECCCCCCCCCCEEEEEEE------CCCCEE---EEEEECCC-CCCCCCCCCCCCEEEEEEEEE-EECCCCEEEE
Q ss_conf             899999705435688862799987------489479---99997352-105866814598899999966-7528843799
Q gi|254780791|r   35 VCVRGEISGYRGIHSSGHAYFSLK------DNHSRI---DAIIWKGT-LNKIEFLPEEGIEFLVIGKIT-TFPGSSKYQI  103 (529)
Q Consensus        35 ~~v~gEis~~~~~~~sGH~Yf~lk------d~~a~i---~~~~~~~~-~~~~~~~~~~G~~v~~~g~~~-~y~~~g~~ql  103 (529)
                      +.++|.|-+..  ..+++.+|+.+      .....+   .-..|-.. .=..+..++.|.+.++.|+.+ .|...+++++
T Consensus        22 yv~kv~V~~~~--~~~~~~~~~v~V~~V~K~~~~~i~~g~~~~~~~~~~C~cp~~L~~g~~YLImG~~~~~~~~~~~~~~   99 (142)
T 2b39_A           22 YVYKTRLIQKK--LEDDFDEYIMVIENIIKSGSDEVQVKQERKFISHIKCREALKLKEGAHYLVWGVSSDLWGEKPKISY   99 (142)
T ss_dssp             EEEEEEEEEEE--CCSSEEEEEEEEEEECSCCTTCCCSSSCCEEEEETTTHHHHCCCTTCEEEEEEESTTBCSBTTBCCE
T ss_pred             EEEEEEEEEEE--CCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEECCCCCEEE
T ss_conf             89999999997--1478089999998865357764689988999976877841156679889998056756078985699


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780791|r  104 IIE  106 (529)
Q Consensus       104 ~v~  106 (529)
                      +++
T Consensus       100 il~  102 (142)
T 2b39_A          100 IIG  102 (142)
T ss_dssp             ECC
T ss_pred             ECC
T ss_conf             908


No 449
>>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} (A:1-167,A:265-324)
Probab=22.17  E-value=36  Score=12.21  Aligned_cols=93  Identities=19%  Similarity=0.273  Sum_probs=59.3

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             28999847842589999998630597-58999721001111036799999999741003576777589995168884442
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL  224 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL  224 (529)
                      -+||...+...-.+.++++.+..+|| +.+.+.    ||  .+.+|.+++..          ..+|+.|........+||
T Consensus        95 l~Ia~~~t~a~~~lp~vi~~f~~~~P~v~l~l~----~~--~~~~i~e~L~~----------g~~Di~I~~~~~~~~~~L  158 (227)
T 1al3_A           95 LYVATTHTQARYALPGVIKGFIERYPRVSLHMH----QG--SPTQIAEAVSK----------GNADFAIATEALHLYDDL  158 (227)
T ss_dssp             EEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEE----EC--CHHHHHHHHHT----------TCCSEEEESSCCCTTSCE
T ss_pred             CEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEE----CC--CHHHHHHHHHC----------CCCEECCCCCCCCCCCCE
T ss_conf             224326037877789999999753995389960----48--98999999975----------995011344666666530


Q ss_pred             HHCCHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHC
Q ss_conf             2007699999997489-048852057775258988641
Q gi|254780791|r  225 WHFNDEMIVRAIANSS-IPIISAIGHETDWTLADYAAD  261 (529)
Q Consensus       225 ~~FN~e~laraI~~~~-iPVisgIGHE~D~Tl~D~VAD  261 (529)
                      -.+=       .+.-+ =|-.|-||--.+.-|=.|+=|
T Consensus       159 v~lp-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (227)
T 1al3_A          159 VMLP-------CYHWNFSHSTTKIGFRRSTFLRSYMYD  189 (227)
T ss_dssp             EEEE-------EEEECBCCEEEEEEEETTCCCCHHHHH
T ss_pred             EEEE-------EEECCCCCCEEEEEEECCCCCCHHHHH
T ss_conf             5888-------420117654799999698857999999


No 450
>>1yzf_A Lipase/acylhydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Enterococcus faecalis V583} (A:)
Probab=22.14  E-value=36  Score=12.20  Aligned_cols=66  Identities=15%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             CEEEEEECCC---------HHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCCCCCCEEEE
Q ss_conf             2899984784---------25899999-986305975899972100111103679999999-974100357677758999
Q gi|254780791|r  146 KIIAVITSPT---------GAVIRDIL-QRISCRFPLRVIIFPVKVQGDECPKEIANAILQ-LNTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       146 ~~i~vits~~---------~a~~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~-~~~~~~~~~~~~~D~iii  214 (529)
                      +||.+|-..-         +.++.+.+ ..+..+++-.+.+....+-|....... ..+.. +..       ..+|+|||
T Consensus         2 k~i~~iGDS~t~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~g~~~~~~~-~~~~~~~~~-------~~~d~vii   73 (195)
T 1yzf_A            2 RKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGL-KRLNKEVLI-------EKPDEVVI   73 (195)
T ss_dssp             EEEEEEESHHHHCBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHH-HHHHHHTGG-------GCCSEEEE
T ss_pred             CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH-HHHHHHHCC-------CCCCEEEE
T ss_conf             8999992523168388887640899999998862688748998420441023455-431123115-------56666898


Q ss_pred             ECCCC
Q ss_conf             51688
Q gi|254780791|r  215 ARGGG  219 (529)
Q Consensus       215 ~RGGG  219 (529)
                      .=|+-
T Consensus        74 ~~G~N   78 (195)
T 1yzf_A           74 FFGAN   78 (195)
T ss_dssp             ECCTT
T ss_pred             ECCCC
T ss_conf             42344


No 451
>>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A* (A:67-150)
Probab=22.12  E-value=36  Score=12.20  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=15.5

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             2299999999999740017189999970543
Q gi|254780791|r   15 YSVSELSYHLKHIVESNLSHVCVRGEISGYR   45 (529)
Q Consensus        15 ~svs~l~~~i~~~l~~~~~~~~v~gEis~~~   45 (529)
                      +|+.|+...|+..+..-+.+--|.-++.+|+
T Consensus        53 lT~~e~~~~I~~~l~~~~~~p~v~V~v~~~r   83 (84)
T 2j58_A           53 KTVSQVRQDITSRLTTYIESPQVDVSIAAFR   83 (84)
T ss_dssp             CCHHHHHHHHHHHHTTTSSSCCEEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             9899999999999986515865068740123


No 452
>>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:1-146)
Probab=22.09  E-value=34  Score=12.35  Aligned_cols=43  Identities=7%  Similarity=0.051  Sum_probs=18.1

Q ss_pred             HHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6412377721456763323467776699999888778998889
Q gi|254780791|r  259 AADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIK  301 (529)
Q Consensus       259 VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~l~  301 (529)
                      .+.++|.|++-+..+-..+..++...-.++...+.+.+.+.+.
T Consensus        92 ~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~  134 (146)
T 3dv8_A           92 EVTIEAEKDTDLWIIPAEIYKGIXKDSAPVANYTNELXATRFS  134 (146)
T ss_dssp             CCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             4310122123324476999986641185256689999999999


No 453
>>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} (A:28-246)
Probab=22.03  E-value=36  Score=12.19  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=24.7

Q ss_pred             CEEEEEECCCCCCHHH-HHHH-----CCCCCCCHHHHHHH
Q ss_conf             0488520577752589-8864-----12377721456763
Q gi|254780791|r  241 IPIISAIGHETDWTLA-DYAA-----DLRAPTPTGAAEMA  274 (529)
Q Consensus       241 iPVisgIGHE~D~Tl~-D~VA-----D~Ra~TPTaAAEla  274 (529)
                      -||+..+||-+|.--+ .+|.     ..|-|+||..|-..
T Consensus       159 kPiyVS~Gh~i~le~A~~iv~~~~~~~~RlPEP~R~Ad~~  198 (219)
T 3ga2_A          159 KPIFLSCGNYIDLDSSYQITXSLINQESRLPIPVRLADLE  198 (219)
T ss_dssp             CCEEEEEEESSCHHHHHHHHHHTCCTTCSSCHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             8999828978799999999999834899898178999999


No 454
>>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243)
Probab=22.03  E-value=36  Score=12.19  Aligned_cols=84  Identities=14%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf             78425899999986305975899972100-11110367999999997410035767775899951688844422007699
Q gi|254780791|r  153 SPTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM  231 (529)
Q Consensus       153 s~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~  231 (529)
                      .++-+++-|+...+.+.-+..+++|..+. -|..-+.+.+.++...           +.++-+-=+.|        |-+.
T Consensus       108 ~~~~~~i~~~~~~ia~a~~~pi~iyn~P~~~g~~~~~~~~~~l~~~-----------~~v~giK~~~~--------~~~~  168 (243)
T 2rfg_A          108 RPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAAL-----------PRIVGVKDATT--------DLAR  168 (243)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTS-----------TTEEEEEECSC--------CTTH
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC-----------CCEEEEEECCC--------CCCH
T ss_conf             9899999999999975379858999457534688899999998407-----------99899740333--------3006


Q ss_pred             HHHHHHHCC--CEEEEEECCCCCCHHHHHH
Q ss_conf             999997489--0488520577752589886
Q gi|254780791|r  232 IVRAIANSS--IPIISAIGHETDWTLADYA  259 (529)
Q Consensus       232 laraI~~~~--iPVisgIGHE~D~Tl~D~V  259 (529)
                      +.+.+...+  +-|++|-    |..+++..
T Consensus       169 ~~~~~~~~~~~~~~~~g~----d~~~~~~l  194 (243)
T 2rfg_A          169 ISRERMLINKPFSFLSGD----DMTAIAYN  194 (243)
T ss_dssp             HHHHHTTCCSCCEEEESC----GGGHHHHH
T ss_pred             HHHHHHHCCCCCCEECCC----CCCCHHHH
T ss_conf             777654216785142566----42201355


No 455
>>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} (A:86-215)
Probab=21.99  E-value=36  Score=12.18  Aligned_cols=112  Identities=12%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             CCCEEEEEECCC-HHHH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE---CCC
Q ss_conf             652899984784-2589-99999863059758999721001111036799999999741003576777589995---168
Q gi|254780791|r  144 IPKIIAVITSPT-GAVI-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA---RGG  218 (529)
Q Consensus       144 ~p~~i~vits~~-~a~~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~---RGG  218 (529)
                      -..+|-+.|.++ .-.+ -.++..+-++++++++...+.+    .++++++++..-          ++|+|.|.   .-+
T Consensus         6 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~V~~LG~~~----p~e~l~~~~~~~----------~~d~V~ls~S~~~~   71 (130)
T 3ezx_A            6 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDV----LNENVVEEAAKH----------KGEKVLLVGSALMT   71 (130)
T ss_dssp             -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSC----CHHHHHHHHHHT----------TTSCEEEEEECSSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEEECCCC
T ss_conf             6773689856997778999999999997799799788899----999999999981----------98804787424565


Q ss_pred             CCHHHHHHCCHHHHHHHHH----HCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             8844422007699999997----4890488520577752589886412377721456763
Q gi|254780791|r  219 GSIEDLWHFNDEMIVRAIA----NSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMA  274 (529)
Q Consensus       219 GS~eDL~~FN~e~laraI~----~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla  274 (529)
                      .+.++++     .+++.+-    .-.+||+.|=..=+..-.--.=+|.-++..+.|.+++
T Consensus        72 ~~~~~~~-----~~~~~l~~~~~~~~i~v~vGG~~~~~~~~~~~Gad~~~~~~~~~~~~~  126 (130)
T 3ezx_A           72 TSMLGQK-----DLMDRLNEEKLRDSVKCMFGGAPVSDKWIEEIGADATAENAAEAAKVA  126 (130)
T ss_dssp             HHHTHHH-----HHHHHHHHTTCGGGSEEEEESSSCCHHHHHHHTCCBCCSSHHHHHHHH
T ss_pred             CCHHHHH-----HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCEEECCHHHHHHHH
T ss_conf             3369899-----999999981888899499889028999999839887807999999999


No 456
>>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix K1} (A:)
Probab=21.89  E-value=36  Score=12.17  Aligned_cols=79  Identities=10%  Similarity=0.005  Sum_probs=50.6

Q ss_pred             EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH
Q ss_conf             98478425899999986305975899972100111103679999999974100357677758999516888444220076
Q gi|254780791|r  150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND  229 (529)
Q Consensus       150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~  229 (529)
                      +|+..+.....+....+....+-.+..+.+-|.=+++...++..+...        ...+|++|=.=|++...++.-+++
T Consensus        35 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------~g~idilinnAg~~~~~~~~~~~~  106 (260)
T 2z1n_A           35 LLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD--------LGGADILVYSTGGPRPGRFMELGV  106 (260)
T ss_dssp             EEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH--------TTCCSEEEECCCCCCCBCGGGCCH
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH--------HCCCEEEECCCCCCCCCCHHHHHH
T ss_conf             999799899999999987424797299997878999999999999999--------689158722335777886676657


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254780791|r  230 EMIVRAI  236 (529)
Q Consensus       230 e~laraI  236 (529)
                      |..-+.+
T Consensus       107 e~~~~~~  113 (260)
T 2z1n_A          107 EDWDESY  113 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             7653000


No 457
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:59-159,A:294-316)
Probab=21.84  E-value=36  Score=12.16  Aligned_cols=96  Identities=13%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      +.||||++. +..-+.+|++-+.+   ..++.+.++++.=    .+..-..+++.+..       ..+|.||++-...  
T Consensus         3 ~~Igvivp~~~~pf~~~ii~gie~~a~~~Gy~l~i~~t~~----~~~~e~~~i~~l~~-------~~vdGiIi~~~~~--   69 (124)
T 2hsg_A            3 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQ----NQDKELHLLNNMLG-------KQVDGIIFMSGNV--   69 (124)
T ss_dssp             CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCS----HHHHHHHHHHHTSC-------CSSCCEEECCSSC--
T ss_pred             EEEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEECCCC----CHHHHHHHHHHHHH-------CCCCEEEECCCCC--
T ss_conf             2899984114674310233124221111332035411467----75889999987763-------2753697214431--


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC
Q ss_conf             44220076999999974890488520577752589886412
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL  262 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~  262 (529)
                             +........+..+|||. +|...+..-+++|.++
T Consensus        70 -------~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V~~~  102 (124)
T 2hsg_A           70 -------TEEHVEELKKSPVPVVL-AASIESTNQIPSVTIM  102 (124)
T ss_dssp             -------CHHHHHHHTTSSSCEEE-ESCCCSCTTSCEEEEH
T ss_pred             -------HHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCH
T ss_conf             -------03456665310022333-2234787554423569


No 458
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:1-101,A:232-277)
Probab=21.66  E-value=36  Score=12.13  Aligned_cols=87  Identities=16%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             5289998478-42589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      ...||||.+. +..-+.++++.+.+   ..++.++++++.-.-+..                  ...++|.|||.-.   
T Consensus         8 s~~Igviip~lsnpff~~ii~gI~~~a~~~Gy~lli~~s~~~~~~l------------------~~~~vDGIIi~~~---   66 (147)
T 3cs3_A            8 TNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFI------------------PEKMVDGAIILDW---   66 (147)
T ss_dssp             CCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCC------------------CTTTCSEEEEECT---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH------------------HHCCCCEEECCCC---
T ss_conf             9989999178988899999999999999859989998176889999------------------9719774201132---


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf             444220076999999974890488520577752589886
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA  259 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V  259 (529)
                            ..+....+.+.+..+|||. ++...+..-+++|
T Consensus        67 ------~~~~~~i~~l~~~~IPvV~-id~~~~~~~i~~V   98 (147)
T 3cs3_A           67 ------TFPTKEIEKFAERGHSIVV-LDRTTEHRNIRQV   98 (147)
T ss_dssp             ------TSCHHHHHHHHHTTCEEEE-SSSCCCSTTEEEE
T ss_pred             ------CHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCEE
T ss_conf             ------0018999875214887432-2233335665301


No 459
>>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} (A:1-59,A:163-323)
Probab=21.65  E-value=36  Score=12.13  Aligned_cols=83  Identities=13%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             CCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH-------CCCEEEEEECCC
Q ss_conf             10011110-3679999999974100357677758999516888444220076999999974-------890488520577
Q gi|254780791|r  179 VKVQGDEC-PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN-------SSIPIISAIGHE  250 (529)
Q Consensus       179 ~~vQG~~a-~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~-------~~iPVisgIGHE  250 (529)
                      -+|.|... +.||++.+..           .+|.||+.=|+|+.-       -.+++..-+       .+.|-+.||--+
T Consensus        58 PtieG~~Tia~EI~eQl~~-----------~pD~ivvpvG~Gg~~-------~Gi~~g~~el~~~g~i~~~p~i~gVq~~  119 (220)
T 2zsj_A           58 PTIEGQKTAAFEICDTLGE-----------APDYHFIPVGNAGNI-------TAYWKGFKIYYEEGKITKLPRMMGWQAE  119 (220)
T ss_dssp             TTHHHHTHHHHHHHHHHSS-----------CCSEEEEECSSSHHH-------HHHHHHHHHHHHTTSCSSCCEEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHCCC-----------CCCEEEEECCCCHHH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             7678888999999997499-----------998899803765349-------9999999985755650223664322324


Q ss_pred             CCCHHHHHHHCCCCCCCHHHHHHHCCCHH
Q ss_conf             75258988641237772145676332346
Q gi|254780791|r  251 TDWTLADYAADLRAPTPTGAAEMAVPVKE  279 (529)
Q Consensus       251 ~D~Tl~D~VAD~Ra~TPTaAAElavp~~~  279 (529)
                      -..++......-...|.+.+..+..|...
T Consensus       120 g~~~~~~~~~~~~~~t~a~~~~i~~~~~~  148 (220)
T 2zsj_A          120 GAAPIVKGYPIKNPQTIATAIKIGNPYSW  148 (220)
T ss_dssp             TBCHHHHTSCCSSCCCSCGGGCCSSCTTH
T ss_pred             CCCHHCCCCCCCCCCEECCCCCCCCCCCC
T ss_conf             46100146746677431022013678665


No 460
>>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} (B:56-304)
Probab=21.63  E-value=36  Score=12.13  Aligned_cols=133  Identities=16%  Similarity=0.133  Sum_probs=75.1

Q ss_pred             HHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC----------------CEEEEEEECCC----CCCCHHHH
Q ss_conf             01226100163102652899984784258999999863059----------------75899972100----11110367
Q gi|254780791|r  130 EGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRF----------------PLRVIIFPVKV----QGDECPKE  189 (529)
Q Consensus       130 eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~----------------p~~~~~~p~~v----QG~~a~~~  189 (529)
                      +.|||+.-..++...+.+.-..--+..-.+.+.+.-...+.                |+-++...-.|    .|..+..-
T Consensus         7 ~~l~D~~sf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~vitg~g~I~G~~V~v~a~d~~~~gGs~~~~~~~K   86 (249)
T 2f9y_B            7 HSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGAR   86 (249)
T ss_dssp             HHHSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEECEETTEECBEEEECTTSTTTCBCTHHHHH
T ss_pred             HHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEECCEEEEEEEEEHHHHCCCCCHHHHHH
T ss_conf             87635996787678767788445654433430155430256887615999998899899999976222134426667777


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH--HHHHCC-HHHHHHH---HHHCCCEEEEEECCCCCC---HHHHHHH
Q ss_conf             999999997410035767775899951688844--422007-6999999---974890488520577752---5898864
Q gi|254780791|r  190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIE--DLWHFN-DEMIVRA---IANSSIPIISAIGHETDW---TLADYAA  260 (529)
Q Consensus       190 i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e--DL~~FN-~e~lara---I~~~~iPVisgIGHE~D~---Tl~D~VA  260 (529)
                      ++++++.+.+..       .-+|.++-+||..-  .--++. --.++++   .+...+|+||.|.-..=-   -+.=+.+
T Consensus        87 ~~r~~~~a~~~~-------lPiv~l~dt~G~~~~~~~e~~~~~~~~~~~~~~~~~~~vP~i~vi~g~~~gG~~~~~~~~~  159 (249)
T 2f9y_B           87 FVRAVEQALEDN-------CPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG  159 (249)
T ss_dssp             HHHHHHHHHHHT-------CCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC
T ss_pred             HHHHHHHHHHHC-------CCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECHHCC
T ss_conf             657999999839-------9769984577543332100100000367789999967997467723786656142012056


Q ss_pred             CCCCCCCHH
Q ss_conf             123777214
Q gi|254780791|r  261 DLRAPTPTG  269 (529)
Q Consensus       261 D~Ra~TPTa  269 (529)
                      |.-..+|++
T Consensus       160 ~~~~~~~~a  168 (249)
T 2f9y_B          160 DLNIAEPKA  168 (249)
T ss_dssp             SEEEECTTC
T ss_pred             CEEEEECCC
T ss_conf             489863100


No 461
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:1-110,A:245-289)
Probab=21.63  E-value=36  Score=12.12  Aligned_cols=93  Identities=16%  Similarity=0.054  Sum_probs=56.1

Q ss_pred             CCEEEEEEC-C-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             528999847-8-42589999998630---597589997210011110367999999997410035767775899951688
Q gi|254780791|r  145 PKIIAVITS-P-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       145 p~~i~vits-~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      -..||||-+ . +..-+..|+.-+..   ..++.++++++.--++.....    ++.+..       .++|.|||..   
T Consensus        11 S~~IglIvp~~~snpffs~il~gI~~~a~~~Gy~lii~~t~~~~e~~~~~----i~~l~~-------~~vDGIIi~~---   76 (155)
T 3g85_A           11 KPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLE----KGISKE-------NSFDAAIIAN---   76 (155)
T ss_dssp             CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGC----GGGSTT-------TCCSEEEESS---
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH----HHHHHH-------CCCCEEEECC---
T ss_conf             99899995775575899999999999999859977999838971199999----999984-------7978798558---


Q ss_pred             CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
Q ss_conf             844422007699999997489048852057775258988
Q gi|254780791|r  220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADY  258 (529)
Q Consensus       220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~  258 (529)
                            ...++.....+....+|+|. ||+..+..=++.
T Consensus        77 ------~~~~d~~~~~l~~~~iPiVl-id~~~~~~~~~~  108 (155)
T 3g85_A           77 ------ISNYDLEYLNKASLTLPIIL-FNRLSNKYSSVN  108 (155)
T ss_dssp             ------CCHHHHHHHHHCCCSSCEEE-ESCCCSSSEEEE
T ss_pred             ------CCCCHHHHHHHHHCCCCEEE-ECCCCCCCCEEE
T ss_conf             ------87882999999757998899-534677578899


No 462
>>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:1-106,A:233-277)
Probab=21.59  E-value=36  Score=12.12  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf             289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r  146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI  221 (529)
Q Consensus       146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~  221 (529)
                      +.||||++. ++--+.++++-+.+   ..++.+.++++.=.-   +.....+++.+...       .+|.||+.=-    
T Consensus        11 ~tIgiIvpdl~~~f~~~ii~gI~~~a~~~Gy~v~I~~~~~~~---~~~e~~~i~~l~~~-------~vDGIIl~~~----   76 (151)
T 3hs3_A           11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSD---VKKYQNAIINFENN-------NVDGIITSAF----   76 (151)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCC---HHHHHHHHHHHHHT-------TCSEEEEECC----
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---HHHHHHHHHHHHHC-------CCCEEEECCC----
T ss_conf             889999299878899999999999999849989999589999---99999999999867-------9638994343----


Q ss_pred             HHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             4422007699999997489048852
Q gi|254780791|r  222 EDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       222 eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                       ++-.         .....+|+|.=
T Consensus        77 -~l~~---------~~~~~IPvV~i   91 (151)
T 3hs3_A           77 -TIPP---------NFHLNTPLVMY   91 (151)
T ss_dssp             -CCCT---------TCCCSSCEEEE
T ss_pred             -CCCH---------HHHCCCCEEEE
T ss_conf             -2204---------77659988997


No 463
>>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A* (A:1-304)
Probab=21.57  E-value=36  Score=12.12  Aligned_cols=14  Identities=7%  Similarity=0.442  Sum_probs=5.4

Q ss_pred             CEEEEECCCCCHHH
Q ss_conf             58999516888444
Q gi|254780791|r  210 DIIILARGGGSIED  223 (529)
Q Consensus       210 D~iii~RGGGS~eD  223 (529)
                      ++||+.-||+...|
T Consensus        33 ~~viV~sa~~~~~~   46 (304)
T 3c1m_A           33 DVVVVVSAMSEVTN   46 (304)
T ss_dssp             SCEEEEECCSTTHH
T ss_pred             CCCCCCCCCCCCCH
T ss_conf             87776476887742


No 464
>>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} (A:)
Probab=21.35  E-value=37  Score=12.08  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=64.7

Q ss_pred             CCCCCCCCEEEEEECCCHHHHHHHH-----HHHHHC-CC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             6310265289998478425899999-----986305-97---58999721001111036799999999741003576777
Q gi|254780791|r  139 NPIPFIPKIIAVITSPTGAVIRDIL-----QRISCR-FP---LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP  209 (529)
Q Consensus       139 ~~lP~~p~~i~vits~~~a~~~D~~-----~~~~~r-~p---~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~  209 (529)
                      -.++.-+.|||||.|.=-..+-|=+     ..+.+. .+   +.++-.|-..       ||--+++++-...      +|
T Consensus         6 ~~~~~~~~ri~IV~s~fn~~i~~~l~~ga~~~l~~~g~~~~~i~v~~VPGa~-------ElP~a~~~l~~~~------~~   72 (154)
T 1rvv_A            6 GNLVGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAF-------EIPFAAKKMAETK------KY   72 (154)
T ss_dssp             CCSCCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGG-------GHHHHHHHHHHTS------CC
T ss_pred             CCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEE-------CHHHHHHHHHCCC------CC
T ss_conf             5557899889999813769999999999999999859986576799988542-------1889999875035------65


Q ss_pred             CEEE----EECCCCCHHHHHHCC-HHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             5899----951688844422007-6999999974890488520577752
Q gi|254780791|r  210 DIII----LARGGGSIEDLWHFN-DEMIVRAIANSSIPIISAIGHETDW  253 (529)
Q Consensus       210 D~ii----i~RGGGS~eDL~~FN-~e~laraI~~~~iPVisgIGHE~D~  253 (529)
                      |.+|    |+||+=.--|..|=. ...|.+.=....+||+.||=|.-..
T Consensus        73 DavvaLG~VIrG~T~H~e~v~~~vs~gl~~v~l~~~~PV~~gvlt~~~~  121 (154)
T 1rvv_A           73 DAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENI  121 (154)
T ss_dssp             SEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSH
T ss_pred             CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH
T ss_conf             6278888896178712678999999999986465898789874488988


No 465
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:106-201)
Probab=21.32  E-value=37  Score=12.08  Aligned_cols=46  Identities=26%  Similarity=0.332  Sum_probs=30.7

Q ss_pred             HHCCCEEEEECCCCCE------EC-C----HHHCCCCCEEEEEEECEEEEEEEEECCCC
Q ss_conf             7314619998489889------57-7----78929998699999110999999505788
Q gi|254780791|r  457 TLKRGYTSIQDTNNNF------IT-Q----KRNLATKTRILINFFDGQANAIVINKAPP  504 (529)
Q Consensus       457 ~L~RGYaiv~~~~Gki------I~-s----~~~l~~gd~i~i~l~DG~v~a~V~~k~~~  504 (529)
                      .|++|.-++...+...      |. +    .+.+++|+.|-  +.||.+..+|+++.+.
T Consensus        14 ~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~Il--idDG~i~l~V~~v~~~   70 (96)
T 3gg8_A           14 TLQQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTIL--IADGSLSVKVVEVGSD   70 (96)
T ss_dssp             EECTTCEEEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEE--ETTTTEEEEEEEECSS
T ss_pred             EECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEE--EECCCEEEEEEEECCE
T ss_conf             85699889996687668986679873242212478898899--8068404888840210


No 466
>>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus} (A:)
Probab=21.23  E-value=37  Score=12.06  Aligned_cols=11  Identities=9%  Similarity=-0.055  Sum_probs=4.6

Q ss_pred             CCCCEEEEEEE
Q ss_conf             45988999999
Q gi|254780791|r   81 EEGIEFLVIGK   91 (529)
Q Consensus        81 ~~G~~v~~~g~   91 (529)
                      ..|..+...|.
T Consensus       107 ~~~~~~~~~g~  117 (191)
T 1zyo_A          107 SSKDVITCYGG  117 (191)
T ss_dssp             CSCEEEEEEEE
T ss_pred             CCCCCCEEECC
T ss_conf             03000101205


No 467
>>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} (A:1-78,A:188-374)
Probab=21.01  E-value=37  Score=12.03  Aligned_cols=35  Identities=29%  Similarity=0.389  Sum_probs=20.9

Q ss_pred             CCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf             01111-0367999999997410035767775899951688844
Q gi|254780791|r  181 VQGDE-CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE  222 (529)
Q Consensus       181 vQG~~-a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e  222 (529)
                      +-|.. ...||.+.+....       ...+|+||.+=||||.-
T Consensus        88 ~~gq~tig~Ei~~Ql~e~~-------g~~pD~Vv~~vGgGs~~  123 (265)
T 1v8z_A           88 RDFQSVIGREAKAQILEAE-------GQLPDVIVACVGGGSNA  123 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------SSCCSEEEEECSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC-------CCCCCEEEECCCCHHHH
T ss_conf             5332577887998899860-------89998899778871789


No 468
>>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex; HET: PSQ; 1.70A {Escherichia coli} (G:1-152,G:303-333)
Probab=20.99  E-value=37  Score=12.02  Aligned_cols=99  Identities=20%  Similarity=0.188  Sum_probs=55.2

Q ss_pred             CCCCCC-CEEEEEECCCHHH-HHHHHHHHHHCCCEEEEEEECC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf             310265-2899984784258-9999998630597589997210---0111103679999999974100357677758999
Q gi|254780791|r  140 PIPFIP-KIIAVITSPTGAV-IRDILQRISCRFPLRVIIFPVK---VQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL  214 (529)
Q Consensus       140 ~lP~~p-~~i~vits~~~a~-~~D~~~~~~~r~p~~~~~~p~~---vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii  214 (529)
                      +.+.+. +.|+.+=-.+|-- .-=| .....|-+..++.++..   +-..+   ++......++.+        +| +|+
T Consensus        38 ~~~~L~gK~v~llF~epSTRTR~SF-e~A~~~LGg~vi~l~~~~ss~~kgE---si~Dta~vLs~y--------~D-~iv  104 (183)
T 1duv_G           38 EEAKLTGKNIALIFEKDSTRTRCSF-EVAAYDQGARVTYLGPSGSQIGHKE---SIKDTARVLGRM--------YD-GIQ  104 (183)
T ss_dssp             CCCSCTTCEEEEEESSCCSHHHHHH-HHHHHHTTCEEEEECSSSSCBTTTB---CHHHHHHHHTTT--------CS-EEE
T ss_pred             CCCCCCCCEEEEEECCCCHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCC---HHHHHHHHHHCC--------CC-EEE
T ss_conf             6656799989999668962489999-9999983644013453000245540---167798874224--------63-476


Q ss_pred             ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHH
Q ss_conf             516888444220076999999974890488520577--7525898864
Q gi|254780791|r  215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYAA  260 (529)
Q Consensus       215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~VA  260 (529)
                      +|+.         .+..+......+.+|||.|-|..  .=-.|+|+-.
T Consensus       105 iR~~---------~~~~l~~la~~~~vPVINg~~~~~HPtQaLaDl~T  143 (183)
T 1duv_G          105 YRGY---------GQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLT  143 (183)
T ss_dssp             EECS---------CHHHHHHHHHHHSSCEEESCCSSCCHHHHHHHHHH
T ss_pred             ECCC---------CCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             4256---------66402322320776520341467769999999999


No 469
>>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} (A:)
Probab=20.91  E-value=37  Score=12.01  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=50.2

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf             28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r  146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW  225 (529)
Q Consensus       146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~  225 (529)
                      ++|-||-.  ...++..++..-..|++++..+...          ..|+..+...       .||+||+        |+.
T Consensus         2 ~~ILiVDd--d~~~~~~i~~~L~~~g~~v~~a~~~----------~eal~~l~~~-------~~dlvil--------D~~   54 (121)
T 1zh2_A            2 TNVLIVED--EQAIRRFLRTALEGDGMRVFEAETL----------QRGLLEAATR-------KPDLIIL--------DLG   54 (121)
T ss_dssp             CEEEEECS--CHHHHHHHHHHHHTTTCEEEEESSH----------HHHHHHHHHH-------CCSEEEE--------ESE
T ss_pred             CEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHC-------CCCEEEE--------ECC
T ss_conf             84999979--9999999999999879999996788----------9999999826-------9988996--------034


Q ss_pred             --HCCHHHHHHHHH-HCCCEEEEEECCCCCCHH
Q ss_conf             --007699999997-489048852057775258
Q gi|254780791|r  226 --HFNDEMIVRAIA-NSSIPIISAIGHETDWTL  255 (529)
Q Consensus       226 --~FN~e~laraI~-~~~iPVisgIGHE~D~Tl  255 (529)
                        .-|-.++++.+. ..++|+|--.++.-....
T Consensus        55 lP~~~G~ell~~l~~~~~~p~I~~t~~~~~~~~   87 (121)
T 1zh2_A           55 LPDGDGIEFIRDLRQWSAVPVIVLSARSEESDK   87 (121)
T ss_dssp             ETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHH
T ss_conf             569973899999972257729999834899999


No 470
>>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:36-143)
Probab=20.80  E-value=38  Score=11.99  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             3679999999974100357677758999516888444220076999999974
Q gi|254780791|r  187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN  238 (529)
Q Consensus       187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~  238 (529)
                      .+.+.+||..+....      ++++|.|+=..  .-.|-.=|=+.+|+..-.
T Consensus        46 ~~kL~~aI~~~~~~~------~p~~I~V~~tc--~~~iIGdDi~~v~~~~~~   89 (108)
T 1mio_B           46 GSNIKTAVKNIFSLY------NPDIIAVHTTC--LSETLGDDLPTYISQMED   89 (108)
T ss_dssp             HHHHHHHHHHHHHHT------CCSEEEEEECH--HHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC------CCCEEEEECCC--HHHHHCCCHHHHHHHHHH
T ss_conf             899999999999850------99899996786--798856889999999998


No 471
>>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} (A:)
Probab=20.78  E-value=38  Score=11.99  Aligned_cols=16  Identities=6%  Similarity=-0.070  Sum_probs=6.9

Q ss_pred             CEEEEEECCCHHHHHH
Q ss_conf             2899984784258999
Q gi|254780791|r  146 KIIAVITSPTGAVIRD  161 (529)
Q Consensus       146 ~~i~vits~~~a~~~D  161 (529)
                      ..|-||+......+.+
T Consensus        43 ~~ivvv~~~~~~~~~~   58 (245)
T 1h7e_A           43 VAEVWVATDDPRVEQA   58 (245)
T ss_dssp             CCEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCCCCHHH
T ss_conf             9979997566310013


No 472
>>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:137-272)
Probab=20.75  E-value=38  Score=11.99  Aligned_cols=42  Identities=14%  Similarity=0.317  Sum_probs=26.2

Q ss_pred             HCCHHHHHHHHHHCCCE---------EEEEECCCCCCHHHHHHHCCCCCCCHHHH
Q ss_conf             00769999999748904---------88520577752589886412377721456
Q gi|254780791|r  226 HFNDEMIVRAIANSSIP---------IISAIGHETDWTLADYAADLRAPTPTGAA  271 (529)
Q Consensus       226 ~FN~e~laraI~~~~iP---------VisgIGHE~D~Tl~D~VAD~Ra~TPTaAA  271 (529)
                      .||.+.+.+.+...+.|         ||+|||-    -+.|.+-...--.|...+
T Consensus         4 ~fd~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN----iy~~EiLf~A~IhP~~~~   54 (136)
T 1tdz_A            4 DFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGN----IYVDEVLWLAKIHPEKET   54 (136)
T ss_dssp             TCCHHHHHHHHHHCCSBHHHHHHTSSSSSCCCH----HHHHHHHHHTTCCTTCBG
T ss_pred             CCCHHHHHHHHHCCCCCCEEEEEECCEECCCCC----EEHHHHHHHHHHHHHHHH
T ss_conf             212033332200023110016750525505676----725557656443253322


No 473
>>2w19_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AROG; transferase isomerase complex, aromatic amino acid biosynthesis, multi-enzyme complex; 2.15A {Mycobacterium tuberculosis} PDB: 2w1a_A* 2b7o_A* (A:)
Probab=20.73  E-value=38  Score=11.98  Aligned_cols=85  Identities=13%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf             10367999999997410035767775899951-68884442200769999999748904885205777525898864123
Q gi|254780791|r  185 ECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR  263 (529)
Q Consensus       185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R  263 (529)
                      ..+.++++=++.+|-.++.     =-+.+|+| |.+.+.|.-    ..|++||-+.-.|||=-.         |   =+.
T Consensus       321 ~~p~el~~L~~~LnP~~ep-----GRlTLI~RmGa~kV~~~L----P~li~aV~~~G~~VvW~c---------D---PMH  379 (472)
T 2w19_A          321 MTPELAVEYVERLDPHNKP-----GRLTLVSRMGNHKVRDLL----PPIVEKVQATGHQVIWQC---------D---PMH  379 (472)
T ss_dssp             CCHHHHHHHHHHHCTTCCT-----TSEEEEECCCTTTHHHHH----HHHHHHHHHTTCCCEEEE---------C---CST
T ss_pred             CCHHHHHHHHHHHCCCCCC-----CEEEEEEECCCHHHHHHH----HHHHHHHHHCCCCEEEEE---------C---CCC
T ss_conf             9999999999984978878-----628999603837899888----999999987799649970---------7---988


Q ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             777214567633234677766999998
Q gi|254780791|r  264 APTPTGAAEMAVPVKEHLQSSLINLEA  290 (529)
Q Consensus       264 a~TPTaAAElavp~~~EL~~~L~~l~~  290 (529)
                      --|=+++--+-+..+..+...+..+.+
T Consensus       380 GNT~~~~~G~KTR~f~~I~~Ev~~ff~  406 (472)
T 2w19_A          380 GNTHESSTGFKTRHFDRIVDEVQGFFE  406 (472)
T ss_dssp             TCC---------CHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             875227998507777899999999999


No 474
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301)
Probab=20.64  E-value=38  Score=11.97  Aligned_cols=85  Identities=11%  Similarity=0.017  Sum_probs=51.0

Q ss_pred             CCEEEEEECCCH-HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf             528999847842-589999998630---5975899972100111103679999999974100357677758999516888
Q gi|254780791|r  145 PKIIAVITSPTG-AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS  220 (529)
Q Consensus       145 p~~i~vits~~~-a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS  220 (529)
                      .++||+|++..+ .-+.++++-+.+   .++++++++...   +..+..-.+.|+.+-..       .+|.||+.=..-.
T Consensus         3 s~~IgvI~p~~~~~f~~~i~~Gi~~aa~~~Gy~vil~~~s---~~d~~~q~~~i~~li~~-------~vDGIIi~~~~~~   72 (165)
T 1tjy_A            3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPT---EPSVSGQVQLVNNFVNQ-------GYDAIIVSAVSPD   72 (165)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCS---SCCHHHHHHHHHHHHHT-------TCSEEEECCSSSS
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC---CCCHHHHHHHHHHHHHC-------CCCEEEECCCCCC
T ss_conf             7889999499999999999999999999819989999799---99999999999999973-------9974420133320


Q ss_pred             HHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf             44422007699999997489048852
Q gi|254780791|r  221 IEDLWHFNDEMIVRAIANSSIPIISA  246 (529)
Q Consensus       221 ~eDL~~FN~e~laraI~~~~iPVisg  246 (529)
                             ..+...+...+..||||+=
T Consensus        73 -------~~~~~i~~l~~~gIPVV~i   91 (165)
T 1tjy_A           73 -------GLCPALKRAMQRGVKILTW   91 (165)
T ss_dssp             -------TTHHHHHHHHHTTCEEEEE
T ss_pred             -------HHHHHHHHHHHCCCCEEEC
T ss_conf             -------2456888765058520103


No 475
>>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} (A:1-152,A:307-335)
Probab=20.64  E-value=38  Score=11.97  Aligned_cols=125  Identities=18%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE-CC--CCC
Q ss_conf             710168007999999999976540122610016310265289998478425899999986305975899972-10--011
Q gi|254780791|r  107 SLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP-VK--VQG  183 (529)
Q Consensus       107 ~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p-~~--vQG  183 (529)
                      ++.+..+-.|+..-+++|+.-..       .+.+-|.--+.++.+=-..+-==+==--....+.+..++.++ ..  +..
T Consensus        14 dls~~el~~Ll~~A~~lK~~~~~-------~~~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~k   86 (181)
T 1dxh_A           14 HHSTRELRYLLDLSRDLKRAKYT-------GTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGH   86 (181)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH-------TCCCCCCTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCBTT
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf             19999999999999999877745-------88776679988999955897125999999999859938996863356789


Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHH
Q ss_conf             1103679999999974100357677758999516888444220076999999974890488520577--752589886
Q gi|254780791|r  184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYA  259 (529)
Q Consensus       184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~V  259 (529)
                      .+   ++......++.+        +| +|++|+.         ....+-+....|.+|||-|-|..  .=-.|+|+.
T Consensus        87 gE---si~DtarvLs~y--------~D-~iviR~~---------~~~~l~~~a~~s~vPVINg~~~~~HPtQaLaDl~  143 (181)
T 1dxh_A           87 KE---SMKDTARVLGRM--------YD-AIEYRGF---------KQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVL  143 (181)
T ss_dssp             TB---CHHHHHHHHHHH--------CS-EEEEECS---------CHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHHH--------CC-EEEEECC---------CHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH
T ss_conf             97---999999999863--------83-9999468---------5579999998689867868986525679999999


No 476
>>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} (A:114-382)
Probab=20.60  E-value=38  Score=11.96  Aligned_cols=12  Identities=17%  Similarity=0.459  Sum_probs=5.5

Q ss_pred             CCEEEEECCCCC
Q ss_conf             758999516888
Q gi|254780791|r  209 PDIIILARGGGS  220 (529)
Q Consensus       209 ~D~iii~RGGGS  220 (529)
                      .|+.+.++.+++
T Consensus        96 ~~~~~~vd~~~~  107 (269)
T 2qq6_A           96 PEVEVAIDXHGR  107 (269)
T ss_dssp             SSSEEEEECTTC
T ss_pred             CCEEEEECCCCC
T ss_conf             984885135545


No 477
>>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} (A:1-136,A:285-357)
Probab=20.53  E-value=38  Score=11.95  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=48.8

Q ss_pred             CCCCEEEEEECCCHH----------HHHHHHHHHHHC----------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             265289998478425----------899999986305----------975899972100111103679999999974100
Q gi|254780791|r  143 FIPKIIAVITSPTGA----------VIRDILQRISCR----------FPLRVIIFPVKVQGDECPKEIANAILQLNTLKE  202 (529)
Q Consensus       143 ~~p~~i~vits~~~a----------~~~D~~~~~~~r----------~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~  202 (529)
                      .-+-+||++.+.+|.          |++.-+..+.+.          +++++......-.-..+. .-+.|.+.+..   
T Consensus         7 ~~~i~IG~l~p~sg~~a~~g~~~~~a~~lAi~~IN~~ggi~~~~l~g~~i~~v~~D~~~~~~~~~-~a~~a~~l~~~---   82 (209)
T 1jdp_A            7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALF-SLVDRVAAARG---   82 (209)
T ss_dssp             CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHH-HHHHHHHHTTT---
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHH-HHHHHHHHHCC---
T ss_conf             97119999977999422104679999999999998667855567899589999964999979999-99999986245---


Q ss_pred             CCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCH
Q ss_conf             3576777589995168884442200769999999748904885205777525
Q gi|254780791|r  203 GRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWT  254 (529)
Q Consensus       203 ~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~T  254 (529)
                          .++|+||   |.++-.     --+.+++......||+||.-.....+|
T Consensus        83 ----~~v~~ii---Gp~~s~-----~~~ava~~a~~~~iP~is~~a~~~~ls  122 (209)
T 1jdp_A           83 ----AKPDLIL---GPVCEY-----AAAPVARLASHWDLPMLSAGALAAGFQ  122 (209)
T ss_dssp             ----CCCSEEE---CCCSHH-----HHHHHHHHHHHHTCCEEESCCCSGGGG
T ss_pred             ----CCEEEEE---CCCCHH-----HHHHHHHHHHHCCCEEEECCCCCCHHC
T ss_conf             ----7808999---998708-----999999999974983995465880121


No 478
>>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} (A:1-79)
Probab=20.41  E-value=38  Score=11.93  Aligned_cols=78  Identities=18%  Similarity=0.236  Sum_probs=50.3

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      ...+|+||+.+++..      -.+ -.+++.  |+     ..-+.++.++++.+-...      .+.+|+|      .|+
T Consensus         2 ~~~ki~VIgD~dtv~------GFr-L~Gi~~--~~-----v~~~ee~~~~~~~l~~~~------d~gII~i------te~   55 (79)
T 2d00_A            2 VPVRMAVIADPETAQ------GFR-LAGLEG--YG-----ASSAEEAQSLLETLVERG------GYALVAV------DEA   55 (79)
T ss_dssp             CCCCEEEEECHHHHH------HHH-HTTSEE--EE-----CSSHHHHHHHHHHHHHHC------CCSEEEE------ETT
T ss_pred             CCEEEEEECCHHHHH------HHH-HCCEEE--EE-----CCCHHHHHHHHHHHHHCC------CEEEEEE------EHH
T ss_conf             726999983688878------876-404135--75-----799899999999997088------8149997------289


Q ss_pred             HHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf             220076999999974890488520
Q gi|254780791|r  224 LWHFNDEMIVRAIANSSIPIISAI  247 (529)
Q Consensus       224 L~~FN~e~laraI~~~~iPVisgI  247 (529)
                      +..-=.+.+-+-..++.+|+|.-|
T Consensus        56 ~~~~i~~~i~~~~~~~~~P~Ii~I   79 (79)
T 2d00_A           56 LLPDPERAVERLMRGRDLPVLLPI   79 (79)
T ss_dssp             TCSCHHHHHHHHTTCCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             986618999999846999889996


No 479
>>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} (D:)
Probab=20.28  E-value=38  Score=11.91  Aligned_cols=80  Identities=14%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf             31026528999847842589999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r  140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG  219 (529)
Q Consensus       140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG  219 (529)
                      .-|.-+.+|||+.=++.  +.|+++.++.+- +++.+++..-                       ...++|.|||.=|-+
T Consensus        15 ~~~~~~~~Iav~~~~~~--~~~~~~~l~~~G-~~~~~~~~~~-----------------------~l~~~D~iil~GG~~   68 (208)
T 2iss_D           15 VPRGSHMKIGVLGVQGD--VREHVEALHKLG-VETLIVKLPE-----------------------QLDMVDGLILPGGES   68 (208)
T ss_dssp             -----CCEEEEECSSSC--HHHHHHHHHHTT-CEEEEECSGG-----------------------GGGGCSEEEECSSCH
T ss_pred             CCCCCCCEEEEEECCCC--HHHHHHHHHHCC-CCEEEECCHH-----------------------HHHHCCEEEECCCCH
T ss_conf             68999989999967998--999999999889-9899989989-----------------------983089899978868


Q ss_pred             CHHH--HHHCCHHHHHHHHHHCCCEEEE
Q ss_conf             8444--2200769999999748904885
Q gi|254780791|r  220 SIED--LWHFNDEMIVRAIANSSIPIIS  245 (529)
Q Consensus       220 S~eD--L~~FN~e~laraI~~~~iPVis  245 (529)
                      +..|  +|.-.....++..++-.+||+-
T Consensus        69 ~~~~~~~~~~~~~~~i~~~~~~g~PilG   96 (208)
T 2iss_D           69 TTMIRILKEMDMDEKLVERINNGLPVFA   96 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCEEEE
T ss_conf             9887665420110678999865965999


No 480
>>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A (A:1-145,A:275-307)
Probab=20.14  E-value=39  Score=11.89  Aligned_cols=103  Identities=19%  Similarity=0.159  Sum_probs=55.5

Q ss_pred             CCCCCCCC-CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             10016310-265289998478425899999986305975899-97210--011110367999999997410035767775
Q gi|254780791|r  135 DQHKNPIP-FIPKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVK--VQGDECPKEIANAILQLNTLKEGRTCPRPD  210 (529)
Q Consensus       135 ~~~k~~lP-~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~--vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D  210 (529)
                      .+++.+.+ .-.+.|+.+=-.++-=-+==-.....+-+..++ +=|..  +...+   ++......++.+        +|
T Consensus        28 ~~~~~~~~~L~gk~i~~lF~e~StRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgE---s~~Dta~vls~~--------~D   96 (178)
T 2i6u_A           28 KDPVSRRPLQGPRGVAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQLGRDE---TLQDTAKVLSRY--------VD   96 (178)
T ss_dssp             HSTTSCCTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEGGGSGGGGTC---CHHHHHHHHHHH--------EE
T ss_pred             HCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCC---HHHHHHHHHHHH--------HH
T ss_conf             3733467446797699996589733599999999954986201144323457761---455567663111--------24


Q ss_pred             EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE---ECCCCCCHHHHHH
Q ss_conf             899951688844422007699999997489048852---0577752589886
Q gi|254780791|r  211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA---IGHETDWTLADYA  259 (529)
Q Consensus       211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg---IGHE~D~Tl~D~V  259 (529)
                       +|++|+.         ....+-.....+.+|||-|   +.|=| -.|+|+-
T Consensus        97 -~iv~R~~---------~~~~~~~~a~~~~vPVINa~~~~~HPt-Q~LaD~~  137 (178)
T 2i6u_A           97 -AIVWRTF---------GQERLDAMASVATVPVINALSDEFHPC-QVLADLQ  137 (178)
T ss_dssp             -EEEEECS---------SHHHHHHHHHHCSSCEEESCCSSCCHH-HHHHHHH
T ss_pred             -HHHHCCC---------CCCCCCCCCCCCCCCEECCCCCCHHHH-HHHHHHH
T ss_conf             -4310222---------332211123356766453675411099-9998899


No 481
>>1dcf_A ETR1 protein; beta-alpha five sandwich; 2.50A {Arabidopsis thaliana} (A:)
Probab=20.13  E-value=39  Score=11.88  Aligned_cols=88  Identities=9%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED  223 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD  223 (529)
                      -+.||-||-.  ....+.+++..-++|++++...          .+.-+|++.+..        .||+|++-      -.
T Consensus         6 ~~~riLvVdd--~~~~~~~~~~~L~~~G~~v~~a----------~~~~eAl~~l~~--------~~dliilD------~~   59 (136)
T 1dcf_A            6 TGLKVLVMDE--NGVSRMVTKGLLVHLGCEVTTV----------SSNEECLRVVSH--------EHKVVFMD------VC   59 (136)
T ss_dssp             TTCEEEEECS--CHHHHHHHHHHHHHTTCEEEEE----------SSHHHHHHHCCT--------TCSEEEEE------CC
T ss_pred             CCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEE----------CCHHHHHHHHHC--------CCCEEEEE------EC
T ss_conf             9999999959--9999999999999879999998----------999999997643--------99853864------13


Q ss_pred             HHHCCHHHHHHHHH-------HCCCEEEEEECCCCCCHHHH
Q ss_conf             22007699999997-------48904885205777525898
Q gi|254780791|r  224 LWHFNDEMIVRAIA-------NSSIPIISAIGHETDWTLAD  257 (529)
Q Consensus       224 L~~FN~e~laraI~-------~~~iPVisgIGHE~D~Tl~D  257 (529)
                      |...|-.++++.|=       ...+|||.--||........
T Consensus        60 lp~~~G~e~~~~ir~~~~~~~~~~~~ii~~s~~~~~~~~~~  100 (136)
T 1dcf_A           60 MPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEK  100 (136)
T ss_dssp             SSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH
T ss_conf             79986799999999860002699985999979999999999


No 482
>>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} (A:)
Probab=20.11  E-value=39  Score=11.88  Aligned_cols=66  Identities=17%  Similarity=0.043  Sum_probs=46.6

Q ss_pred             CCCEEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             65289998478425899999-9863059758999721001111036799999999741003576777589995
Q gi|254780791|r  144 IPKIIAVITSPTGAVIRDIL-QRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA  215 (529)
Q Consensus       144 ~p~~i~vits~~~a~~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~  215 (529)
                      ...-++-+-+-||.++.-++ ..+++++|..+.++|.+.-+++.. +.-+|+..++.+.+     ..|.+|+.
T Consensus        98 ~~~~~~~~gGGTGSG~~~~i~~~~~~~~~~~~~vv~~p~~~e~~v-~~yNa~l~l~~L~~-----~~D~~i~~  164 (320)
T 1ofu_A           98 MVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRK-RMQIADEGIRALAE-----SVDSLITI  164 (320)
T ss_dssp             EEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHH-HHHHHHHHHHHHHT-----TCSEEEEE
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHHHHH-----HCCCHHEE
T ss_conf             899994268988765289999999984993899997786553368-99999999999998-----67823111


No 483
>>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* (A:192-274)
Probab=20.03  E-value=35  Score=12.22  Aligned_cols=36  Identities=8%  Similarity=-0.003  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf             7699999997489048852057775258988641237772
Q gi|254780791|r  228 NDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP  267 (529)
Q Consensus       228 N~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP  267 (529)
                      |...+...|...+.|+-.    ..+-.+.|++..+=.+-|
T Consensus        39 ~~~~~~~~i~~~~~~~p~----~~~~~~~~li~~~l~~dP   74 (83)
T 3g51_A           39 DRKETMTMILKAKLGMPQ----FLSPEAQSLLRMLFKRNP   74 (83)
T ss_dssp             SHHHHHHHHHHCCCCCCT----TSCHHHHHHHHHHCCSSG
T ss_pred             CHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHCCCCH
T ss_conf             999999999808999987----789999999999753898


No 484
>>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold; 1.75A {Escherichia coli} (A:1-112)
Probab=20.01  E-value=39  Score=11.87  Aligned_cols=30  Identities=7%  Similarity=-0.104  Sum_probs=16.1

Q ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             772145676332346777669999988877
Q gi|254780791|r  265 PTPTGAAEMAVPVKEHLQSSLINLEARLNN  294 (529)
Q Consensus       265 ~TPTaAAElavp~~~EL~~~L~~l~~RL~~  294 (529)
                      -.=|+||+..-=...-+...|..+++.+..
T Consensus        35 gS~t~AA~~l~is~~avs~~i~~LE~~lg~   64 (112)
T 1b9m_A           35 GSISQGAKDAGISYKSAWDAINEXNQLSEH   64 (112)
T ss_dssp             SSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             999999999798999999999999987199


Done!