Query gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 529 No_of_seqs 228 out of 1609 Neff 8.5 Searched_HMMs 33803 Date Wed Jun 1 14:01:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780791.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3f2b_A DNA-directed DNA polym 97.7 0.00034 9.9E-09 57.1 9.1 80 32-111 17-101 (110) 2 >1gm5_A RECG; helicase, replic 96.9 0.0012 3.5E-08 52.2 4.2 78 34-111 8-87 (89) 3 >2hpi_A DNA polymerase III alp 96.7 0.0065 1.9E-07 45.6 7.1 76 33-111 20-98 (105) 4 >3kf6_A Protein STN1; OB fold, 96.5 0.048 1.4E-06 37.8 10.3 104 6-113 11-128 (159) 5 >2pi2_A Replication protein A 96.4 0.094 2.8E-06 35.2 11.0 116 11-130 45-170 (270) 6 >1e1o_A Lysyl-tRNA synthetase; 96.3 0.062 1.8E-06 36.8 9.7 96 14-112 5-109 (121) 7 >3kdf_D Replication protein A 96.3 0.15 4.5E-06 33.3 12.3 113 12-128 6-128 (132) 8 >2kbn_A Conserved protein; nuc 96.1 0.089 2.6E-06 35.4 9.7 75 31-111 14-94 (109) 9 >3e9h_A Lysyl-tRNA synthetase; 95.8 0.084 2.5E-06 35.6 8.5 95 15-112 35-137 (145) 10 >1n9w_A Aspartyl-tRNA syntheta 95.6 0.23 6.8E-06 31.7 10.3 71 33-112 14-86 (104) 11 >3bju_A Lysyl-tRNA synthetase; 95.5 0.17 5E-06 32.9 9.2 98 13-112 4-110 (127) 12 >2fp4_B Succinyl-COA ligase [G 95.2 0.24 7.1E-06 31.6 9.2 135 131-274 4-145 (152) 13 >3i7f_A Aspartyl-tRNA syntheta 95.2 0.25 7.4E-06 31.4 9.2 77 33-112 63-151 (161) 14 >1oj7_A Hypothetical oxidoredu 95.1 0.15 4.3E-06 33.5 7.9 73 140-224 20-95 (175) 15 >2nu8_B SCS-beta, succinyl-COA 95.1 0.36 1.1E-05 30.1 9.9 133 130-274 2-144 (151) 16 >1b8a_A Protein (aspartyl-tRNA 95.1 0.28 8.3E-06 31.0 9.3 77 33-112 17-99 (108) 17 >1v1q_A Primosomal replication 95.0 0.38 1.1E-05 29.8 10.6 79 33-112 20-118 (134) 18 >1txy_A Primosomal replication 95.0 0.16 4.8E-06 33.1 7.9 79 34-113 4-102 (104) 19 >3eiv_A Single-stranded DNA-bi 94.9 0.18 5.3E-06 32.7 7.8 79 32-111 4-109 (199) 20 >2fxq_A Single-strand binding 94.8 0.32 9.4E-06 30.5 9.0 80 31-111 4-107 (264) 21 >1ujn_A Dehydroquinate synthas 94.7 0.15 4.4E-06 33.4 7.1 96 133-245 16-115 (160) 22 >1wyd_A Hypothetical aspartyl- 94.5 0.34 1E-05 30.2 8.6 78 33-112 17-96 (104) 23 >1c0a_A Aspartyl tRNA syntheta 94.5 0.33 9.9E-06 30.3 8.4 78 33-112 16-103 (111) 24 >1eov_A ASPRS, aspartyl-tRNA s 94.5 0.19 5.7E-06 32.4 7.2 77 33-112 37-128 (136) 25 >1o2d_A Alcohol dehydrogenase, 94.3 0.29 8.4E-06 30.9 7.8 76 144-237 40-118 (188) 26 >1x54_A Asparaginyl-tRNA synth 94.1 0.27 7.9E-06 31.2 7.3 82 29-112 12-99 (108) 27 >3dm3_A Replication factor A; 94.1 0.47 1.4E-05 29.0 8.4 73 34-111 16-97 (105) 28 >2vw9_A Single-stranded DNA bi 94.0 0.32 9.4E-06 30.5 7.4 79 33-112 3-106 (134) 29 >3e0e_A Replication protein A; 93.9 0.64 1.9E-05 27.8 9.0 72 34-110 13-92 (97) 30 >1xjv_A Protection of telomere 93.9 0.65 1.9E-05 27.7 11.3 54 51-106 38-93 (145) 31 >3fhw_A Primosomal replication 93.8 0.45 1.3E-05 29.1 7.9 76 34-111 3-96 (115) 32 >2h2w_A Homoserine O-succinylt 93.8 0.5 1.5E-05 28.8 8.1 117 124-244 24-151 (312) 33 >1x3e_A Single-strand binding 93.7 0.35 1E-05 30.2 7.2 79 32-111 4-109 (165) 34 >3ce9_A Glycerol dehydrogenase 93.7 0.29 8.7E-06 30.8 6.9 87 145-251 34-128 (162) 35 >1z9f_A Single-strand binding 93.7 0.37 1.1E-05 29.9 7.3 81 31-112 15-120 (153) 36 >3bfj_A 1,3-propanediol oxidor 93.6 0.57 1.7E-05 28.2 8.1 71 144-224 32-107 (185) 37 >1vlj_A NADH-dependent butanol 92.4 0.35 1E-05 30.1 5.7 77 144-238 42-122 (193) 38 >3lft_A Uncharacterized protei 92.4 1 3E-05 26.0 8.2 85 144-247 15-103 (118) 39 >1se8_A Single-strand binding 92.1 1.1 3.2E-05 25.7 8.5 82 31-113 4-111 (301) 40 >1jq5_A Glycerol dehydrogenase 92.0 0.71 2.1E-05 27.4 6.8 93 140-251 26-126 (163) 41 >3jzd_A Iron-containing alcoho 91.7 0.9 2.7E-05 26.4 7.1 82 144-245 35-118 (161) 42 >1xah_A Sadhqs, 3-dehydroquina 91.1 0.91 2.7E-05 26.4 6.6 91 144-245 30-121 (165) 43 >1o1y_A Conserved hypothetical 90.8 0.71 2.1E-05 27.4 5.8 88 139-244 6-97 (239) 44 >3koj_A Uncharacterized protei 90.7 0.49 1.5E-05 28.8 4.9 77 32-109 11-107 (108) 45 >3hl0_A Maleylacetate reductas 90.7 1.4 4.1E-05 24.8 7.2 83 143-245 32-116 (159) 46 >2ej5_A Enoyl-COA hydratase su 90.5 0.61 1.8E-05 28.0 5.2 81 182-269 27-125 (199) 47 >3isa_A Putative enoyl-COA hyd 89.6 0.88 2.6E-05 26.5 5.5 76 186-269 35-129 (254) 48 >3clh_A 3-dehydroquinate synth 89.6 0.043 1.3E-06 38.2 -1.2 104 142-252 23-128 (160) 49 >1qvc_A Single stranded DNA bi 89.4 1.8 5.2E-05 23.9 7.3 80 31-111 4-109 (145) 50 >3kjx_A Transcriptional regula 89.4 1.2 3.6E-05 25.2 6.1 111 145-275 8-122 (140) 51 >2fbm_A Y chromosome chromodom 89.3 1 3E-05 26.1 5.6 78 184-269 50-150 (291) 52 >1jb7_A Telomere-binding prote 89.1 1.8 5.5E-05 23.7 10.0 72 34-107 51-140 (180) 53 >2h3h_A Sugar ABC transporter, 89.0 1.9 5.5E-05 23.6 9.0 87 146-249 2-91 (147) 54 >1ynx_A Replication factor-A p 89.0 1.1 3.4E-05 25.6 5.7 74 33-106 15-101 (114) 55 >3k8a_A Putative primosomal re 89.0 1.9 5.6E-05 23.6 8.9 75 33-111 8-101 (103) 56 >1of8_A Phospho-2-dehydro-3-de 88.9 1.9 5.6E-05 23.6 10.0 43 208-250 241-283 (370) 57 >1sg6_A Pentafunctional AROM p 88.7 2 5.8E-05 23.5 9.0 94 143-245 34-136 (181) 58 >1eqq_A Single stranded DNA bi 88.1 0.74 2.2E-05 27.2 4.2 79 31-110 5-109 (178) 59 >1u0t_A Inorganic polyphosphat 87.9 2 5.8E-05 23.4 6.3 107 144-259 3-122 (149) 60 >1l0w_A Aspartyl-tRNA syntheta 87.9 2.2 6.4E-05 23.1 8.7 78 33-112 17-101 (113) 61 >3h02_A Naphthoate synthase; I 87.7 2.1 6.2E-05 23.2 6.3 79 185-269 54-153 (265) 62 >1jmc_A Protein (replication p 87.3 1.4 4.1E-05 24.8 5.3 73 33-105 19-104 (127) 63 >3ju1_A Enoyl-COA hydratase/is 87.3 1.4 4.2E-05 24.7 5.3 80 182-269 66-173 (407) 64 >3h0u_A Putative enoyl-COA hyd 87.3 1.3 3.8E-05 25.0 5.1 78 185-268 34-133 (289) 65 >3iv7_A Alcohol dehydrogenase 87.2 2.3 6.9E-05 22.8 6.8 72 145-238 37-109 (160) 66 >2gru_A 2-deoxy-scyllo-inosose 87.1 2.4 7E-05 22.7 11.2 94 141-245 29-125 (173) 67 >2ppy_A Enoyl-COA hydratase; b 87.1 2.3 6.9E-05 22.8 6.3 78 186-269 36-132 (207) 68 >3hp0_A Putative polyketide bi 87.1 1.8 5.4E-05 23.7 5.7 79 183-269 32-131 (267) 69 >1jye_A Lactose operon repress 87.0 2.4 7.1E-05 22.7 7.4 124 118-259 33-164 (219) 70 >1ta9_A Glycerol dehydrogenase 86.9 0.76 2.3E-05 27.1 3.7 89 143-251 89-185 (219) 71 >3ebe_A Protein MCM10 homolog; 86.8 0.57 1.7E-05 28.3 3.0 75 34-110 58-138 (149) 72 >2pbp_A Enoyl-COA hydratase su 86.5 2.5 7.4E-05 22.5 6.2 80 183-269 30-126 (200) 73 >2zxr_A Single-stranded DNA sp 86.4 2.6 7.6E-05 22.4 9.3 87 15-112 60-157 (160) 74 >2k50_A Replication factor A r 86.3 2.6 7.6E-05 22.4 7.7 52 53-107 45-98 (115) 75 >1sg4_A 3,2-trans-enoyl-COA is 86.2 2.3 6.8E-05 22.8 5.9 80 183-269 29-128 (260) 76 >2vdj_A Homoserine O-succinylt 86.1 1.4 4.2E-05 24.7 4.8 118 124-244 12-139 (301) 77 >3l83_A Glutamine amido transf 85.9 2.6 7.7E-05 22.3 6.0 81 146-244 4-86 (250) 78 >1rrm_A Lactaldehyde reductase 85.8 2.7 8.1E-05 22.2 6.1 71 145-225 31-104 (183) 79 >1uiy_A Enoyl-COA hydratase; l 85.7 2.7 8.1E-05 22.1 6.4 79 185-269 26-125 (198) 80 >2w3p_A Benzoyl-COA-dihydrodio 85.6 2.8 8.2E-05 22.1 6.5 75 184-263 57-154 (293) 81 >1q7r_A Predicted amidotransfe 84.7 3 8.9E-05 21.8 6.2 96 124-245 2-99 (219) 82 >2f6q_A Peroxisomal 3,2-trans- 84.6 3 8.9E-05 21.8 5.9 81 182-269 50-152 (280) 83 >2k75_A Uncharacterized protei 84.2 3.1 9.3E-05 21.6 8.9 66 32-106 13-85 (106) 84 >1vco_A CTP synthetase; tetram 83.7 3.3 9.7E-05 21.5 8.8 87 155-244 3-108 (270) 85 >3gjz_A Microcin immunity prot 83.5 3.3 9.8E-05 21.4 8.3 89 141-235 6-106 (142) 86 >3e61_A Putative transcription 83.4 3.3 9.9E-05 21.4 8.6 80 146-246 9-92 (120) 87 >2a7k_A CARB; crotonase, antib 83.2 3.4 0.0001 21.3 6.2 80 185-270 27-126 (250) 88 >1zl0_A Hypothetical protein P 83.1 3.4 0.0001 21.3 8.0 83 146-234 18-106 (118) 89 >1o7i_A SSB, SSO2364, single s 83.0 3.4 0.0001 21.3 9.4 68 33-106 13-88 (119) 90 >1wdk_A Fatty oxidation comple 82.9 3.5 0.0001 21.2 6.2 80 183-269 33-134 (284) 91 >1hzd_A AUH, AU-binding protei 82.6 3.4 0.0001 21.3 5.5 78 185-269 39-136 (213) 92 >3he2_A Enoyl-COA hydratase EC 82.2 2.4 7.1E-05 22.7 4.6 81 182-269 45-138 (226) 93 >2iex_A Dihydroxynapthoic acid 82.1 3.7 0.00011 21.0 6.5 81 183-269 37-137 (211) 94 >3g64_A Putative enoyl-COA hyd 82.0 3.7 0.00011 21.0 5.5 83 182-270 41-145 (236) 95 >1ef8_A Methylmalonyl COA deca 82.0 2.5 7.4E-05 22.5 4.6 77 187-269 33-127 (221) 96 >3lgj_A Single-stranded DNA-bi 81.9 2.9 8.5E-05 22.0 4.9 80 31-111 22-128 (169) 97 >3ull_A DNA binding protein; D 81.6 3.8 0.00011 20.8 7.7 82 31-113 13-126 (132) 98 >1mj3_A Enoyl-COA hydratase, m 81.6 1.8 5.3E-05 23.8 3.7 81 182-269 31-128 (238) 99 >3l3s_A Enoyl-COA hydratase/is 81.2 3.9 0.00012 20.7 5.7 82 182-269 30-135 (209) 100 >1qzg_A Protection of telomere 81.1 4 0.00012 20.7 9.7 70 34-105 44-125 (187) 101 >2eq5_A 228AA long hypothetica 80.5 1.8 5.4E-05 23.7 3.5 85 144-246 10-103 (127) 102 >2q5c_A NTRC family transcript 80.1 4.2 0.00013 20.5 6.7 77 144-250 3-81 (106) 103 >3fdu_A Putative enoyl-COA hyd 79.8 4.3 0.00013 20.4 6.1 77 186-269 33-130 (266) 104 >3en2_A Probable primosomal re 79.5 4.4 0.00013 20.3 8.3 69 32-102 2-90 (101) 105 >1kq3_A Glycerol dehydrogenase 79.5 0.74 2.2E-05 27.2 1.2 91 140-251 17-115 (150) 106 >1j6q_A Cytochrome C maturatio 79.3 4.3 0.00013 20.4 5.1 88 12-108 10-102 (136) 107 >1wz8_A Enoyl-COA hydratase; l 79.3 4.5 0.00013 20.3 5.7 79 185-269 37-135 (244) 108 >2vk2_A YTFQ, ABC transporter 78.7 4.6 0.00014 20.1 9.2 97 145-259 2-102 (134) 109 >1v4v_A UDP-N-acetylglucosamin 78.5 4.7 0.00014 20.1 8.8 82 177-271 63-159 (204) 110 >1lcy_A HTRA2 serine protease; 78.5 3.1 9.3E-05 21.6 4.1 44 460-503 23-67 (86) 111 >1h05_A 3-dehydroquinate dehyd 78.0 4.8 0.00014 20.0 9.2 81 146-245 3-99 (146) 112 >3h5o_A Transcriptional regula 77.9 4.8 0.00014 19.9 7.4 120 118-257 34-161 (207) 113 >3h81_A Enoyl-COA hydratase EC 77.9 4.7 0.00014 20.1 4.9 81 182-269 49-146 (278) 114 >3jy6_A Transcriptional regula 77.6 4.9 0.00015 19.9 9.3 93 145-259 7-103 (159) 115 >3da8_A Probable 5'-phosphorib 77.4 5 0.00015 19.8 6.9 36 140-175 7-42 (215) 116 >1dci_A Dienoyl-COA isomerase; 77.3 5 0.00015 19.8 6.2 81 182-269 28-138 (249) 117 >3brs_A Periplasmic binding pr 77.2 3.8 0.00011 20.8 4.3 94 144-253 6-103 (156) 118 >3kqf_A Enoyl-COA hydratase/is 76.6 5.2 0.00015 19.7 5.6 80 183-269 34-133 (207) 119 >1qpz_A PURA, protein (purine 76.2 5.3 0.00016 19.6 9.7 85 146-249 2-90 (151) 120 >1no5_A Hypothetical protein H 76.0 4 0.00012 20.7 4.1 79 158-259 13-94 (114) 121 >3lke_A Enoyl-COA hydratase; n 75.9 5.4 0.00016 19.5 6.2 78 185-269 31-132 (263) 122 >1dbq_A Purine repressor; tran 75.7 5.4 0.00016 19.5 9.4 88 145-251 7-98 (157) 123 >1pjh_A Enoyl-COA isomerase; E 75.4 5.5 0.00016 19.4 6.6 40 230-269 102-143 (280) 124 >1q52_A MENB; lyase, structura 75.4 5.5 0.00016 19.4 6.7 41 229-269 136-178 (290) 125 >2uuu_A Alkyldihydroxyacetonep 75.3 5 0.00015 19.8 4.5 52 154-220 42-95 (117) 126 >3bpt_A 3-hydroxyisobutyryl-CO 74.9 5.7 0.00017 19.3 6.1 77 182-269 30-133 (363) 127 >2vx2_A Enoyl-COA hydratase do 74.8 5.1 0.00015 19.7 4.4 41 229-269 115-157 (230) 128 >3g23_A Peptidase U61, LD-carb 74.6 5.8 0.00017 19.3 7.2 103 146-259 4-113 (167) 129 >2csu_A 457AA long hypothetica 74.5 5.8 0.00017 19.2 8.7 121 130-256 3-147 (183) 130 >2j5g_A ALR4455 protein; enzym 74.3 5.8 0.00017 19.2 6.0 83 181-269 47-148 (263) 131 >1ky9_A Protease DO, DEGP, HTR 73.8 4.2 0.00012 20.5 3.7 44 461-504 64-109 (128) 132 >1te0_A Protease DEGS; two dom 73.0 3.9 0.00011 20.8 3.4 43 461-503 24-67 (103) 133 >3i47_A Enoyl COA hydratase/is 71.7 6.6 0.0002 18.7 6.3 81 183-269 29-130 (221) 134 >2an1_A Putative kinase; struc 71.7 4.4 0.00013 20.3 3.4 92 143-253 3-101 (138) 135 >2iks_A DNA-binding transcript 71.6 6.6 0.0002 18.7 7.5 95 145-259 20-118 (163) 136 >3l49_A ABC sugar (ribose) tra 69.9 7.1 0.00021 18.4 9.2 88 144-249 4-95 (150) 137 >3dzc_A UDP-N-acetylglucosamin 69.6 7.2 0.00021 18.4 8.8 82 177-271 83-179 (211) 138 >1wjj_A Hypothetical protein F 69.2 7.3 0.00022 18.3 9.1 49 52-106 63-112 (145) 139 >2c4w_A 3-dehydroquinate dehyd 69.0 7.4 0.00022 18.3 8.7 82 146-245 10-109 (176) 140 >3cqy_A Anhydro-N-acetylmurami 68.8 7.5 0.00022 18.3 6.3 86 121-245 78-175 (180) 141 >3bf0_A Protease 4; bacterial, 68.6 7.3 0.00022 18.3 4.0 82 182-269 25-108 (223) 142 >1nzy_A Dehalogenase, 4-chloro 68.6 7.5 0.00022 18.2 6.2 79 185-269 30-131 (243) 143 >3hin_A Putative 3-hydroxybuty 68.1 5.2 0.00015 19.7 3.2 42 228-269 94-137 (210) 144 >3l6u_A ABC-type sugar transpo 68.0 7.7 0.00023 18.1 9.2 85 144-246 7-95 (155) 145 >2ioy_A Periplasmic sugar-bind 67.8 7.8 0.00023 18.1 8.0 98 146-261 2-103 (150) 146 >1zr6_A Glucooligosaccharide o 67.8 2.7 8.1E-05 22.1 1.7 58 148-220 17-76 (95) 147 >2hmc_A AGR_L_411P, dihydrodip 67.7 7.8 0.00023 18.1 4.6 71 182-262 41-114 (235) 148 >2rgy_A Transcriptional regula 67.6 7.9 0.00023 18.1 8.8 91 145-253 8-102 (132) 149 >2q35_A CURF; crotonase, lyase 67.5 7.1 0.00021 18.5 3.8 76 187-269 32-121 (243) 150 >3d8u_A PURR transcriptional r 67.1 8 0.00024 18.0 7.1 103 146-269 4-110 (154) 151 >1jfl_A Aspartate racemase; al 66.9 8.1 0.00024 18.0 6.8 86 146-247 2-104 (118) 152 >2f48_A Diphosphate--fructose- 66.8 8.1 0.00024 18.0 7.6 109 142-268 69-215 (283) 153 >2bon_A Lipid kinase; DAG kina 66.2 8.3 0.00025 17.8 7.1 104 142-271 26-138 (165) 154 >3bpp_A 1510-N membrane protea 66.1 5.4 0.00016 19.5 3.0 80 183-270 20-102 (210) 155 >3gkb_A Putative enoyl-COA hyd 66.1 8.3 0.00025 17.8 5.8 78 185-269 35-137 (227) 156 >1szo_A 6-oxocamphor hydrolase 66.1 8.3 0.00025 17.8 6.2 78 185-269 43-139 (257) 157 >2dri_A D-ribose-binding prote 65.8 8.4 0.00025 17.8 7.7 90 146-253 2-95 (139) 158 >3fdx_A Putative filament prot 65.7 8.4 0.00025 17.8 5.2 54 179-245 87-141 (143) 159 >3ixl_A Amdase, arylmalonate d 65.4 4.7 0.00014 20.1 2.5 96 145-247 6-105 (145) 160 >2j5i_A P-hydroxycinnamoyl COA 65.3 5 0.00015 19.8 2.7 79 184-269 35-137 (211) 161 >1mjh_A Protein (ATP-binding d 65.2 8.5 0.00025 17.8 3.8 49 185-245 107-156 (162) 162 >3dzd_A Transcriptional regula 65.2 8.6 0.00025 17.7 6.4 82 146-252 1-86 (128) 163 >1ueh_A Undecaprenyl pyrophosp 65.1 8.6 0.00026 17.7 10.6 15 139-153 12-26 (253) 164 >2ae2_A Protein (tropinone red 64.9 8.7 0.00026 17.7 8.2 92 122-236 24-115 (260) 165 >2rjo_A Twin-arginine transloc 64.7 8.8 0.00026 17.6 8.9 91 145-251 5-99 (152) 166 >1js1_X Transcarbamylase; alph 64.5 8.8 0.00026 17.6 7.5 120 132-260 22-157 (204) 167 >1a04_A Nitrate/nitrite respon 64.2 8.7 0.00026 17.7 3.7 83 145-253 5-94 (128) 168 >2uyg_A 3-dehydroquinate dehyd 64.2 8.9 0.00026 17.6 7.5 69 159-245 26-97 (149) 169 >8abp_A L-arabinose-binding pr 64.1 9 0.00027 17.5 9.5 97 145-260 2-102 (138) 170 >3d02_A Putative LACI-type tra 63.9 9 0.00027 17.5 9.7 100 145-261 4-107 (154) 171 >2gtr_A CDY-like, chromodomain 63.7 9.1 0.00027 17.5 5.8 80 183-269 31-132 (245) 172 >1pfk_A Phosphofructokinase; t 63.6 9.1 0.00027 17.5 8.4 103 144-270 1-139 (185) 173 >1hsk_A UDP-N-acetylenolpyruvo 63.0 6.3 0.00019 18.9 2.8 34 173-221 50-83 (121) 174 >2w3p_A Benzoyl-COA-dihydrodio 62.7 9.4 0.00028 17.3 5.2 82 182-269 59-162 (263) 175 >3fn2_A Putative sensor histid 62.5 6.9 0.00021 18.5 3.0 33 459-492 1-33 (59) 176 >2rff_A Putative nucleotidyltr 62.2 9.6 0.00028 17.3 3.9 39 165-221 26-65 (111) 177 >1to3_A Putative aldolase YIHT 62.2 9.6 0.00028 17.3 9.3 95 159-261 141-242 (304) 178 >1xi3_A Thiamine phosphate pyr 62.0 9.7 0.00029 17.3 5.3 81 182-273 113-205 (215) 179 >3gow_A PAAG, probable enoyl-C 61.8 9.8 0.00029 17.2 6.2 82 182-269 24-122 (254) 180 >2pl1_A Transcriptional regula 61.6 9.8 0.00029 17.2 6.5 82 147-253 2-87 (121) 181 >1yo3_A Dynein light chain 1; 61.6 9.8 0.00029 17.2 3.8 52 16-71 47-101 (102) 182 >3fg9_A Protein of universal s 61.6 9.8 0.00029 17.2 5.6 57 176-245 84-141 (143) 183 >3eod_A Protein HNR; response 61.5 9.8 0.00029 17.2 8.8 88 142-256 4-95 (130) 184 >1uqr_A 3-dehydroquinate dehyd 61.2 10 0.00029 17.1 6.7 81 146-245 2-98 (154) 185 >1e8g_A Vanillyl-alcohol oxida 60.9 5.8 0.00017 19.2 2.3 33 173-220 72-104 (126) 186 >1gg4_A UDP-N-acetylmuramoylal 60.9 10 0.0003 17.1 6.2 85 184-275 22-106 (140) 187 >3js8_A Cholesterol oxidase; c 60.6 10 0.0003 17.1 3.5 35 176-219 28-62 (87) 188 >1yg6_A ATP-dependent CLP prot 60.2 10 0.0003 17.0 7.1 81 179-268 32-114 (193) 189 >3gv0_A Transcriptional regula 60.1 10 0.00031 17.0 8.1 93 146-259 9-107 (156) 190 >2b4a_A BH3024; 10175646, stru 59.8 10 0.00031 17.0 7.9 89 140-254 10-104 (138) 191 >3d54_D Phosphoribosylformylgl 59.4 11 0.00031 16.9 7.3 75 146-244 3-83 (193) 192 >2fep_A Catabolite control pro 58.9 11 0.00032 16.8 8.9 84 144-247 15-102 (156) 193 >1gpm_A GMP synthetase, XMP am 58.7 11 0.00032 16.8 3.5 81 142-245 4-84 (204) 194 >3egc_A Putative ribose operon 58.6 11 0.00032 16.8 8.0 93 146-259 9-105 (159) 195 >1mvo_A PHOP response regulato 58.5 11 0.00032 16.8 9.3 100 144-268 2-106 (136) 196 >3bbn_B Ribosomal protein S2; 58.4 7.8 0.00023 18.1 2.6 44 207-259 156-199 (231) 197 >2zsk_A PH1733, 226AA long hyp 58.2 11 0.00033 16.7 6.6 89 146-250 2-106 (115) 198 >1wot_A Putative minimal nucle 57.9 4.4 0.00013 20.3 1.3 80 157-259 10-91 (98) 199 >1vc4_A Indole-3-glycerol phos 57.9 11 0.00033 16.7 3.9 113 144-274 128-252 (254) 200 >2f6i_A ATP-dependent CLP prot 57.8 11 0.00033 16.7 7.2 111 143-268 13-126 (215) 201 >1gtz_A 3-dehydroquinate dehyd 57.7 11 0.00033 16.7 7.6 83 143-244 4-103 (156) 202 >3bid_A UPF0339 protein NMB108 57.6 9.6 0.00028 17.3 3.0 18 48-65 8-25 (64) 203 >2exr_A Cytokinin dehydrogenas 57.4 11 0.00031 16.9 3.2 34 173-220 63-96 (115) 204 >2nv0_A Glutamine amidotransfe 57.3 11 0.00034 16.6 6.1 74 146-245 2-77 (196) 205 >2ef0_A Ornithine carbamoyltra 56.6 12 0.00034 16.5 11.3 120 121-259 21-143 (182) 206 >2gm3_A Unknown protein; AT3G0 56.3 12 0.00035 16.5 5.2 50 185-246 111-161 (175) 207 >1jvn_A Glutamine, bifunctiona 56.2 12 0.00035 16.5 5.0 76 146-244 5-83 (218) 208 >1kgs_A DRRD, DNA binding resp 56.0 12 0.00035 16.5 3.3 74 155-253 10-87 (124) 209 >2b99_A Riboflavin synthase; l 54.9 12 0.00036 16.3 10.1 93 146-253 3-105 (156) 210 >1zxx_A 6-phosphofructokinase; 54.7 12 0.00036 16.3 8.4 102 145-270 1-138 (182) 211 >3pfk_A Phosphofructokinase; t 54.7 12 0.00037 16.3 7.8 102 145-270 1-140 (186) 212 >1vgv_A UDP-N-acetylglucosamin 54.4 12 0.00037 16.3 7.4 83 176-271 57-154 (213) 213 >3kf8_A Protein STN1; OB fold; 54.2 13 0.00037 16.3 10.1 121 7-127 2-159 (179) 214 >2oyc_A PLP phosphatase, pyrid 53.9 13 0.00037 16.2 4.4 71 146-227 54-132 (166) 215 >2qv7_A Diacylglycerol kinase 53.6 13 0.00038 16.2 7.3 113 138-274 17-137 (140) 216 >1nnx_A Protein YGIW; structur 53.5 13 0.00038 16.2 7.6 69 33-110 38-106 (109) 217 >3clk_A Transcription regulato 53.4 13 0.00038 16.1 6.6 82 145-245 8-93 (159) 218 >1gqo_A Dehydroquinase, dhqase 53.3 13 0.00038 16.1 7.7 81 146-245 1-97 (143) 219 >2gkg_A Response regulator hom 53.3 13 0.00038 16.1 8.0 84 143-251 3-91 (127) 220 >3d3q_A TRNA delta(2)-isopente 53.2 13 0.00038 16.1 3.9 34 144-177 5-38 (182) 221 >2jfq_A Glutamate racemase; ce 53.2 13 0.00038 16.1 7.4 104 142-260 19-128 (174) 222 >1zq6_A Otcase, ornithine carb 53.1 13 0.00038 16.1 5.1 107 143-259 56-177 (222) 223 >3idf_A USP-like protein; univ 53.0 13 0.00039 16.1 3.3 35 208-245 101-136 (138) 224 >2ytx_A Cold shock domain-cont 52.9 8.6 0.00025 17.7 2.1 47 456-502 24-79 (97) 225 >3h5t_A Transcriptional regula 52.2 13 0.0004 16.0 5.7 93 145-259 8-109 (160) 226 >2csu_A 457AA long hypothetica 52.2 10 0.00031 17.0 2.4 88 142-249 5-97 (126) 227 >3hp4_A GDSL-esterase; psychro 51.2 14 0.00041 15.9 8.1 68 144-219 1-77 (185) 228 >2p7n_A Pathogenicity island 1 51.2 14 0.00041 15.9 5.4 113 176-299 231-364 (407) 229 >3c3k_A Alanine racemase; stru 50.6 14 0.00042 15.8 8.8 93 145-259 8-104 (154) 230 >2p0y_A Hypothetical protein L 50.6 14 0.00042 15.8 7.1 131 113-261 110-247 (341) 231 >3fij_A LIN1909 protein; 11172 50.5 14 0.00042 15.8 5.1 43 208-250 61-119 (254) 232 >1wvf_A 4-cresol dehydrogenase 50.2 11 0.00033 16.7 2.3 34 173-221 58-91 (112) 233 >2k7i_A UPF0339 protein ATU023 49.9 7.2 0.00021 18.4 1.3 17 48-64 30-46 (83) 234 >1ka9_H Imidazole glycerol pho 49.7 14 0.00043 15.7 5.0 74 146-245 3-80 (200) 235 >2bvf_A 6-hydroxy-D-nicotine o 49.3 15 0.00043 15.7 3.0 57 149-220 14-72 (252) 236 >3gbv_A Putative LACI-family t 49.1 15 0.00043 15.6 7.6 86 145-248 8-102 (167) 237 >3k8x_A Acetyl-COA carboxylase 49.0 15 0.00044 15.6 6.4 29 184-219 91-119 (255) 238 >1gud_A ALBP, D-allose-binding 48.9 15 0.00044 15.6 7.5 102 146-264 2-108 (153) 239 >3dbi_A Sugar-binding transcri 48.6 15 0.00044 15.6 9.1 123 119-261 34-163 (185) 240 >2ywd_A Glutamine amidotransfe 48.1 15 0.00045 15.5 3.9 74 146-245 3-79 (191) 241 >1pk6_C C1Q, complement C1Q su 47.6 15 0.00046 15.5 4.2 59 42-101 40-118 (129) 242 >2k49_A UPF0339 protein SO_388 47.6 13 0.00039 16.0 2.4 16 49-64 11-26 (118) 243 >1f0x_A DLDH, D-lactate dehydr 47.1 16 0.00046 15.4 3.4 33 173-220 47-79 (103) 244 >2ppv_A Uncharacterized protei 47.0 16 0.00046 15.4 4.6 123 117-260 106-235 (332) 245 >3brc_A Conserved protein of u 46.8 16 0.00047 15.4 4.5 63 146-217 1-65 (120) 246 >2d59_A Hypothetical protein P 46.7 16 0.00047 15.3 3.0 98 143-260 20-121 (144) 247 >3gt7_A Sensor protein; struct 46.4 16 0.00047 15.3 10.0 94 141-259 3-100 (154) 248 >3jvd_A Transcriptional regula 45.8 16 0.00048 15.2 4.6 86 118-215 36-126 (205) 249 >1rkq_A Hypothetical protein Y 45.7 16 0.00048 15.2 3.3 134 100-262 4-150 (176) 250 >1u0l_A Probable GTPase ENGC; 45.5 16 0.00049 15.2 6.3 49 35-88 9-57 (73) 251 >2vqe_I 30S ribosomal protein 45.3 13 0.00039 16.0 2.1 35 182-222 38-72 (128) 252 >1amf_A Molybdate transport pr 45.2 17 0.00049 15.2 3.7 45 123-167 62-110 (126) 253 >1s8n_A Putative antiterminato 45.1 17 0.00049 15.2 7.6 87 142-252 10-97 (143) 254 >1kny_A Kntase, kanamycin nucl 45.0 17 0.00049 15.1 2.9 49 156-222 13-64 (126) 255 >3cfy_A Putative LUXO represso 44.9 17 0.0005 15.1 6.5 80 145-251 4-87 (137) 256 >3i1m_I 30S ribosomal protein 44.7 14 0.00041 15.8 2.1 17 206-222 58-74 (130) 257 >2rdm_A Response regulator rec 44.6 17 0.0005 15.1 8.4 90 145-260 5-99 (132) 258 >1gpw_B Amidotransferase HISH; 44.6 17 0.0005 15.1 3.9 39 206-244 40-81 (201) 259 >1vma_A Cell division protein 44.5 17 0.0005 15.1 6.6 13 209-221 251-268 (306) 260 >3gjz_A Microcin immunity prot 44.4 17 0.0005 15.1 5.7 65 186-253 101-168 (194) 261 >3bbn_I Ribosomal protein S9; 44.3 12 0.00036 16.4 1.8 16 207-222 126-141 (197) 262 >2dgd_A 223AA long hypothetica 44.3 17 0.0005 15.1 8.8 88 145-245 1-94 (95) 263 >2j6b_A AFV3-109; sulfolobus, 43.0 18 0.00052 14.9 3.1 24 228-253 26-49 (109) 264 >2j85_A STIV B116; viral prote 42.4 10 0.0003 17.1 1.1 11 240-250 42-52 (122) 265 >3brq_A HTH-type transcription 42.3 18 0.00054 14.8 9.7 97 143-259 17-119 (144) 266 >2uva_G Fatty acid synthase be 42.2 18 0.00054 14.8 5.2 41 209-249 160-207 (383) 267 >2fyi_A HTH-type transcription 42.0 18 0.00054 14.8 5.2 58 142-215 12-70 (132) 268 >3fw9_A Reticuline oxidase; BI 42.0 18 0.00054 14.8 2.6 107 149-270 15-180 (258) 269 >1sr3_A APO-CCME; OB fold, bet 42.0 18 0.00054 14.8 9.8 88 12-108 6-97 (136) 270 >3i1m_B 30S ribosomal protein 42.0 18 0.00052 14.9 2.3 43 208-259 112-154 (196) 271 >3exa_A TRNA delta(2)-isopente 41.9 18 0.00054 14.8 4.2 32 146-177 3-34 (240) 272 >2dnf_A Doublecortin domain-co 41.8 13 0.0004 16.0 1.7 40 449-488 46-86 (108) 273 >1aj0_A DHPS, dihydropteroate 41.6 15 0.00046 15.4 2.0 116 82-246 11-139 (282) 274 >3ff6_A Acetyl-COA carboxylase 41.5 19 0.00055 14.7 4.8 25 209-238 168-192 (262) 275 >3gh1_A Predicted nucleotide-b 41.4 19 0.00055 14.7 4.1 46 209-261 166-222 (380) 276 >2ab0_A YAJL; DJ-1/THIJ superf 41.1 19 0.00056 14.7 4.6 93 144-246 1-105 (205) 277 >1t70_A Phosphatase; crystal, 41.0 19 0.00056 14.7 6.4 77 159-253 18-94 (255) 278 >3ksm_A ABC-type sugar transpo 40.6 19 0.00056 14.6 7.7 89 147-251 2-94 (140) 279 >2zkq_i 40S ribosomal protein 40.3 16 0.00046 15.4 1.8 32 206-238 63-94 (146) 280 >1meo_A Phosophoribosylglycina 40.3 19 0.00057 14.6 6.7 31 146-176 1-32 (209) 281 >1iuk_A Hypothetical protein T 40.2 19 0.00057 14.6 2.4 96 143-260 11-114 (140) 282 >2w5e_A Putative serine protea 40.0 19 0.00057 14.6 4.8 42 461-502 21-62 (80) 283 >3beo_A UDP-N-acetylglucosamin 39.9 19 0.00058 14.5 6.3 42 230-271 99-141 (164) 284 >2c92_A 6,7-dimethyl-8-ribityl 39.4 20 0.00059 14.5 10.1 91 143-248 15-117 (160) 285 >2k8e_A UPF0339 protein YEGP; 39.3 20 0.00059 14.5 2.3 80 49-135 27-125 (130) 286 >1on3_A Methylmalonyl-COA carb 39.0 20 0.00059 14.4 6.2 98 172-276 54-162 (229) 287 >3bic_A Methylmalonyl-COA muta 38.9 20 0.00059 14.4 9.2 111 146-275 22-140 (179) 288 >1tdj_A Biosynthetic threonine 38.8 14 0.00042 15.8 1.4 65 165-247 39-113 (236) 289 >2vqe_B 30S ribosomal protein 38.4 20 0.0006 14.4 2.8 66 207-296 157-222 (256) 290 >1zjj_A Hypothetical protein P 38.4 20 0.0006 14.4 4.3 72 146-228 34-111 (131) 291 >2gek_A Phosphatidylinositol m 37.7 21 0.00062 14.3 8.2 85 174-265 13-113 (169) 292 >3d6n_B Aspartate carbamoyltra 37.6 21 0.00062 14.3 8.4 90 138-247 27-120 (144) 293 >1k68_A Phytochrome response r 37.6 21 0.00062 14.3 4.3 90 146-253 3-100 (140) 294 >1vhq_A Enhancing lycopene bio 37.6 21 0.00062 14.3 4.5 101 144-245 5-138 (232) 295 >2k5n_A Putative cold-shock pr 37.5 21 0.00062 14.3 4.3 46 459-504 13-65 (74) 296 >1n8f_A DAHP synthetase; (beta 37.4 21 0.00062 14.2 9.8 44 205-252 223-271 (350) 297 >2jba_A Phosphate regulon tran 37.4 21 0.00062 14.2 6.9 86 145-255 2-91 (127) 298 >3h75_A Periplasmic sugar-bind 37.3 21 0.00063 14.2 7.5 97 146-259 4-109 (208) 299 >1t3i_A Probable cysteine desu 37.2 21 0.00063 14.2 5.7 92 145-249 29-120 (168) 300 >3lao_A Enoyl-COA hydratase/is 36.8 11 0.00033 16.7 0.6 79 184-269 38-136 (258) 301 >2nn6_G Exosome complex exonuc 36.8 21 0.00063 14.2 2.8 76 35-116 7-85 (87) 302 >2ekp_A 2-deoxy-D-gluconate 3- 36.6 22 0.00064 14.1 9.4 82 146-236 2-98 (239) 303 >1yg2_A Gene activator APHA; v 36.2 20 0.00059 14.5 1.8 54 112-169 36-89 (89) 304 >2fn9_A Ribose ABC transporter 35.8 22 0.00066 14.0 9.6 85 146-248 3-91 (150) 305 >2h0a_A TTHA0807, transcriptio 35.6 22 0.00066 14.0 4.0 92 147-259 1-99 (142) 306 >1l1j_A Heat shock protease HT 35.3 20 0.00059 14.5 1.7 14 79-92 127-140 (239) 307 >3ezl_A Acetoacetyl-COA reduct 35.3 22 0.00066 14.0 5.1 69 161-237 52-120 (256) 308 >3gvc_A Oxidoreductase, probab 35.2 23 0.00067 14.0 8.7 90 139-237 22-132 (277) 309 >2qf3_A Protease DEGS; peripla 35.2 23 0.00067 14.0 3.0 12 81-92 137-148 (243) 310 >2z08_A Universal stress prote 35.0 23 0.00067 13.9 6.6 55 179-245 80-135 (137) 311 >1uzm_A 3-oxoacyl-[acyl-carrie 34.7 23 0.00068 13.9 9.5 88 140-236 9-109 (247) 312 >3c3m_A Response regulator rec 34.6 23 0.00068 13.9 7.1 83 146-253 4-90 (108) 313 >1pk6_B C1Q, complement C1Q su 34.6 23 0.00068 13.9 6.1 59 42-101 40-121 (132) 314 >1x3l_A Hypothetical protein P 34.5 14 0.00043 15.7 0.9 31 182-221 82-113 (244) 315 >2hig_A 6-phospho-1-fructokina 34.5 23 0.00068 13.9 6.8 102 143-255 68-205 (249) 316 >2i4r_A V-type ATP synthase su 34.5 23 0.00068 13.9 3.6 80 144-249 8-88 (102) 317 >3fyf_A Protein BVU-3222; stru 34.4 23 0.00069 13.9 4.6 20 87-106 131-150 (176) 318 >3bbl_A Regulatory protein of 34.2 23 0.00069 13.9 5.4 30 62-91 63-95 (287) 319 >3lou_A Formyltetrahydrofolate 34.1 23 0.00069 13.8 7.2 65 145-219 2-89 (199) 320 >3jyv_I 40S ribosomal protein 34.0 23 0.00067 13.9 1.8 30 205-239 54-83 (138) 321 >3k4h_A Putative transcription 33.9 23 0.00069 13.8 9.0 87 145-252 8-103 (160) 322 >2fvy_A D-galactose-binding pe 33.9 24 0.0007 13.8 10.2 100 146-264 3-108 (164) 323 >1y7o_A ATP-dependent CLP prot 33.8 24 0.0007 13.8 5.8 78 183-270 13-93 (176) 324 >2k6l_A Putative uncharacteriz 33.7 18 0.00053 14.8 1.3 25 215-239 24-48 (51) 325 >2ho4_A Haloacid dehalogenase- 33.5 24 0.0007 13.8 4.5 83 120-227 28-117 (140) 326 >2jli_A YSCU, YOP proteins tra 33.2 22 0.00066 14.0 1.7 34 224-262 85-118 (123) 327 >2dum_A Hypothetical protein P 33.1 24 0.00071 13.7 5.8 52 186-250 105-158 (170) 328 >2zwm_A Transcriptional regula 33.0 24 0.00071 13.7 7.2 84 145-253 2-86 (130) 329 >3hcw_A Maltose operon transcr 33.0 24 0.00072 13.7 8.9 95 145-260 7-110 (163) 330 >1qdl_B Protein (anthranilate 32.9 24 0.00072 13.7 8.4 80 146-244 2-81 (195) 331 >2cby_A ATP-dependent CLP prot 32.5 25 0.00073 13.6 8.9 109 150-271 8-118 (208) 332 >3hz6_A Xylulokinase; xylulose 32.5 25 0.00073 13.6 5.4 41 189-241 149-189 (270) 333 >2ze6_A Isopentenyl transferas 32.4 25 0.00073 13.6 2.4 29 147-175 2-30 (125) 334 >3l07_A Bifunctional protein f 32.3 25 0.00073 13.6 4.9 79 144-238 25-109 (134) 335 >1c0m_A Protein (integrase); H 32.3 25 0.00073 13.6 2.2 16 458-473 23-39 (67) 336 >1xny_A Pccase, propionyl-COA 32.1 25 0.00074 13.6 3.8 93 171-270 55-163 (252) 337 >1zl0_A Hypothetical protein P 32.0 25 0.00074 13.6 6.3 77 173-254 95-174 (193) 338 >3f9i_A 3-oxoacyl-[acyl-carrie 31.9 25 0.00074 13.6 7.4 88 136-232 4-108 (249) 339 >1m1n_A Nitrogenase molybdenum 31.7 23 0.00068 13.9 1.6 33 145-177 89-125 (157) 340 >3b6y_A Gamma-interferon-induc 31.5 25 0.00075 13.5 7.0 52 36-90 10-61 (90) 341 >1a4i_A Methylenetetrahydrofol 31.4 25 0.00075 13.5 4.9 79 143-237 26-111 (144) 342 >1jkx_A GART;, phosphoribosylg 31.3 26 0.00076 13.5 6.2 29 147-175 2-31 (212) 343 >2yuj_A Ubiquitin fusion degra 31.2 26 0.00076 13.5 2.5 48 448-506 14-61 (75) 344 >2zkq_b 40S ribosomal protein 31.1 26 0.00076 13.5 2.1 44 207-259 117-160 (295) 345 >3foz_A TRNA delta(2)-isopente 31.0 26 0.00076 13.4 4.1 35 143-177 7-41 (232) 346 >3ixl_A Amdase, arylmalonate d 31.0 26 0.00076 13.4 10.2 89 145-246 1-95 (95) 347 >1usg_A Leucine-specific bindi 30.7 26 0.00077 13.4 5.3 87 145-249 17-107 (150) 348 >3eaf_A ABC transporter, subst 30.3 26 0.00078 13.4 9.3 107 144-266 19-133 (181) 349 >2oq0_A Gamma-interferon-induc 30.1 27 0.00079 13.3 7.0 38 50-90 28-65 (92) 350 >3k9c_A Transcriptional regula 30.0 27 0.00079 13.3 7.0 91 146-259 13-106 (159) 351 >1b0a_A Protein (fold bifuncti 29.9 27 0.00079 13.3 2.6 88 131-251 33-122 (149) 352 >3cnh_A Hydrolase family prote 29.8 27 0.0008 13.3 3.5 52 146-198 32-85 (130) 353 >3kp1_A D-ornithine aminomutas 29.6 27 0.0008 13.3 5.4 92 168-274 47-142 (179) 354 >1w6u_A 2,4-dienoyl-COA reduct 29.6 27 0.0008 13.3 7.4 79 151-237 36-114 (262) 355 >2i0f_A 6,7-dimethyl-8-ribityl 29.4 27 0.00081 13.2 11.6 103 141-252 8-122 (157) 356 >3c8c_A Methyl-accepting chemo 29.3 27 0.00081 13.2 3.1 36 441-479 43-78 (141) 357 >3g1w_A Sugar ABC transporter; 28.8 28 0.00082 13.2 8.8 97 144-261 18-124 (134) 358 >2a9v_A GMP synthase; NP_39440 28.8 28 0.00082 13.2 5.7 84 139-245 7-90 (212) 359 >3crm_A TRNA delta(2)-isopente 28.8 28 0.00082 13.2 4.1 32 145-176 4-35 (239) 360 >1ylq_A Putative nucleotidyltr 28.8 28 0.00082 13.2 2.9 48 158-222 3-51 (96) 361 >3cnb_A DNA-binding response r 28.8 28 0.00082 13.2 6.1 90 144-258 7-102 (143) 362 >1kz1_A 6,7-dimethyl-8-ribityl 28.8 28 0.00082 13.2 9.7 110 143-267 15-137 (159) 363 >1tg6_A Putative ATP-dependent 28.6 28 0.00083 13.1 8.8 98 158-270 71-172 (277) 364 >2o2z_A Hypothetical protein; 28.4 28 0.00083 13.1 6.0 106 139-260 124-236 (323) 365 >1yb1_A 17-beta-hydroxysteroid 28.3 28 0.00084 13.1 8.1 86 137-230 22-130 (257) 366 >2hqr_A Putative transcription 28.1 29 0.00084 13.1 4.6 75 155-256 8-84 (99) 367 >1yio_A Response regulatory pr 27.9 29 0.00085 13.0 7.3 83 145-252 4-90 (143) 368 >2vc6_A MOSA, dihydrodipicolin 27.9 29 0.00085 13.0 4.1 41 154-194 109-150 (236) 369 >3e3m_A Transcriptional regula 27.9 29 0.00085 13.0 9.2 109 119-247 43-156 (221) 370 >3lop_A Substrate binding peri 27.8 29 0.00085 13.0 3.8 98 143-258 17-118 (162) 371 >3fan_A Non-structural protein 27.8 21 0.00063 14.2 0.8 25 468-492 39-63 (164) 372 >1dz3_A Stage 0 sporulation pr 27.6 29 0.00086 13.0 3.4 47 189-250 36-89 (109) 373 >3bi8_A Dihydrodipicolinate sy 27.6 29 0.00086 13.0 6.6 78 153-249 109-189 (291) 374 >2j9r_A Thymidine kinase; TK1, 27.5 29 0.00086 13.0 6.7 101 143-253 25-140 (167) 375 >3b9e_A Chitinase A; TIM-barre 27.5 29 0.00086 13.0 5.2 50 63-113 43-100 (125) 376 >3l07_A Bifunctional protein f 27.5 29 0.00086 13.0 2.4 83 138-253 42-126 (151) 377 >1vr5_A Oligopeptide ABC trans 27.4 29 0.00086 13.0 5.3 136 120-271 81-222 (247) 378 >3a8t_A Adenylate isopentenylt 27.3 29 0.00087 13.0 4.1 34 143-176 37-70 (228) 379 >3eqz_A Response regulator; st 27.2 22 0.00067 14.0 0.9 79 147-253 5-89 (135) 380 >3bch_A 40S ribosomal protein 27.1 30 0.00087 12.9 2.7 44 207-259 150-193 (253) 381 >2r5f_A Transcriptional regula 26.8 30 0.00088 12.9 3.9 60 160-224 10-73 (264) 382 >1ja9_A 4HNR, 1,3,6,8-tetrahyd 26.7 30 0.00089 12.9 7.0 80 150-237 49-128 (274) 383 >3kke_A LACI family transcript 26.7 30 0.00089 12.9 8.2 84 146-250 16-103 (166) 384 >2fds_A Orotidine-monophosphat 26.4 17 0.00051 15.0 0.2 26 162-187 269-295 (352) 385 >2q7x_A UPF0052 protein SP_156 26.4 30 0.0009 12.8 3.9 99 147-260 6-126 (210) 386 >2ipi_A Aclacinomycin oxidored 26.0 30 0.00087 12.9 1.3 15 254-268 172-186 (278) 387 >1pg5_A Aspartate carbamoyltra 26.0 31 0.00091 12.8 10.4 107 132-259 24-138 (176) 388 >1p2f_A Response regulator; DR 26.0 31 0.00091 12.8 3.4 83 146-256 3-89 (146) 389 >2bzr_A Propionyl-COA carboxyl 26.0 31 0.00091 12.8 5.9 92 171-269 53-156 (235) 390 >3bf0_A Protease 4; bacterial, 25.9 31 0.00091 12.8 2.5 91 177-274 62-155 (208) 391 >1vi6_A 30S ribosomal protein 25.8 31 0.00091 12.7 2.6 103 148-259 44-157 (208) 392 >2fl8_A Baseplate structural p 25.8 31 0.00092 12.7 3.5 18 54-71 73-90 (173) 393 >2bty_A Acetylglutamate kinase 25.8 31 0.00092 12.7 3.1 30 224-253 145-174 (282) 394 >3a10_A Response regulator; ph 25.7 31 0.00092 12.7 9.1 92 145-261 1-96 (116) 395 >2ywj_A Glutamine amidotransfe 25.6 31 0.00092 12.7 3.3 39 206-245 35-73 (186) 396 >1mio_A Nitrogenase molybdenum 25.5 31 0.00093 12.7 2.3 54 144-197 66-124 (132) 397 >1p6q_A CHEY2; chemotaxis, sig 25.5 31 0.00093 12.7 6.9 87 145-256 6-97 (129) 398 >2qu7_A Putative transcription 25.4 31 0.00093 12.7 6.7 91 146-259 9-102 (152) 399 >2fr1_A Erythromycin synthase, 25.4 31 0.00093 12.7 3.9 26 146-171 35-60 (184) 400 >2b8n_A Glycerate kinase, puta 25.3 14 0.00041 15.9 -0.5 41 183-232 75-127 (227) 401 >2duw_A Putative COA-binding p 25.2 32 0.00094 12.7 2.2 100 140-261 8-115 (145) 402 >2zvf_A Alanyl-tRNA synthetase 25.2 32 0.00094 12.7 9.4 32 144-175 46-77 (145) 403 >1uf0_A Serine/threonine-prote 25.0 32 0.00094 12.6 1.8 37 450-486 47-84 (116) 404 >2bbr_A Viral CAsp8 and FADD-l 24.9 14 0.00043 15.7 -0.5 20 148-167 39-58 (88) 405 >2qo3_A Eryaii erythromycin po 24.6 32 0.00096 12.6 3.2 58 158-228 38-99 (120) 406 >2o20_A Catabolite control pro 24.5 32 0.00096 12.6 9.8 108 118-245 35-147 (202) 407 >2d0b_A RNAse HIII, ribonuclea 24.3 33 0.00097 12.5 1.9 20 172-191 41-63 (82) 408 >1q0q_A 1-deoxy-D-xylulose 5-p 24.2 33 0.00097 12.5 5.9 89 143-247 7-109 (133) 409 >1zgz_A Torcad operon transcri 24.2 33 0.00097 12.5 9.3 85 144-253 1-86 (122) 410 >1vl8_A Gluconate 5-dehydrogen 24.2 33 0.00097 12.5 7.4 80 150-237 49-128 (267) 411 >3gg8_A Pyruvate kinase; malar 24.2 33 0.00097 12.5 5.8 128 104-246 63-216 (277) 412 >1srr_A SPO0F, sporulation res 24.2 33 0.00097 12.5 9.3 87 145-258 3-93 (124) 413 >3loq_A Universal stress prote 24.1 33 0.00097 12.5 4.5 34 209-245 252-287 (294) 414 >2eq5_A 228AA long hypothetica 24.1 33 0.00098 12.5 4.2 83 144-244 11-100 (101) 415 >2f9i_B Acetyl-coenzyme A carb 24.0 33 0.00098 12.5 5.5 92 172-270 62-166 (224) 416 >1qwj_A Cytidine monophospho-N 24.0 33 0.00098 12.5 1.4 29 222-250 103-134 (206) 417 >1vjr_A 4-nitrophenylphosphata 24.0 33 0.00098 12.5 5.7 83 120-227 38-126 (145) 418 >1geg_A Acetoin reductase; SDR 24.0 33 0.00098 12.5 8.3 91 122-236 17-107 (256) 419 >2yx1_A Hypothetical protein M 23.9 33 0.00098 12.5 1.8 21 120-140 12-32 (70) 420 >2k6p_A Uncharacterized protei 23.9 33 0.00098 12.5 1.4 41 457-500 22-62 (92) 421 >1wr8_A Phosphoglycolate phosp 23.9 33 0.00098 12.5 7.7 131 101-267 3-143 (162) 422 >3fxq_A LYSR type regulator of 23.8 33 0.00098 12.5 4.8 32 147-178 4-36 (214) 423 >2e8b_A Probable molybdopterin 23.8 33 0.00098 12.5 4.5 16 182-197 80-95 (201) 424 >2j9i_A Glutamate-ammonia liga 23.8 33 0.00099 12.5 1.8 26 36-61 24-50 (168) 425 >3g1w_A Sugar ABC transporter; 23.8 33 0.00099 12.5 9.6 84 145-246 4-92 (171) 426 >1wek_A Hypothetical protein T 23.7 33 0.00099 12.4 2.1 29 231-259 44-72 (201) 427 >2vpi_A GMP synthase; guanine 23.7 33 0.00099 12.4 1.9 81 141-244 20-100 (218) 428 >1jx6_A LUXP protein; protein- 23.7 33 0.00099 12.4 4.5 95 144-259 18-120 (133) 429 >2qyw_A Vesicle transport thro 23.5 34 0.001 12.4 9.6 14 279-292 18-31 (102) 430 >3cfu_A Uncharacterized lipopr 23.4 17 0.00051 15.0 -0.3 72 34-107 48-126 (159) 431 >3i09_A Periplasmic branched-c 23.4 34 0.001 12.4 8.2 108 144-269 3-128 (184) 432 >2fr1_A Erythromycin synthase, 23.3 34 0.001 12.4 9.3 55 172-235 95-149 (266) 433 >2zay_A Response regulator rec 23.3 34 0.001 12.4 4.6 85 144-253 7-95 (147) 434 >2i2x_B MTAC, methyltransferas 23.2 34 0.001 12.4 10.7 114 142-274 2-120 (140) 435 >3grf_A Ornithine carbamoyltra 23.2 34 0.001 12.4 9.2 103 136-259 34-143 (193) 436 >1z56_A Ligase interacting fac 23.1 34 0.001 12.3 4.0 33 420-452 201-233 (246) 437 >1ys7_A Transcriptional regula 22.9 34 0.001 12.3 8.9 83 146-253 8-94 (131) 438 >1pzn_A RAD51, DNA repair and 22.9 26 0.00078 13.4 0.6 40 215-263 53-92 (95) 439 >2i0k_A Oxidoreductase; MIX al 22.8 35 0.001 12.3 3.0 11 122-132 118-128 (220) 440 >2hi0_A Putative phosphoglycol 22.8 35 0.001 12.3 12.2 122 120-274 27-149 (152) 441 >2qvg_A Two component response 22.7 35 0.001 12.3 4.8 98 141-257 3-108 (143) 442 >3hbx_A GAD 1, glutamate decar 22.7 35 0.001 12.3 7.4 66 119-186 26-92 (178) 443 >1pix_A Glutaconyl-COA decarbo 22.7 35 0.001 12.3 5.8 98 171-275 45-157 (243) 444 >1nha_A TFIIF-alpha, transcrip 22.6 34 0.001 12.4 1.1 10 50-59 73-82 (82) 445 >2hw2_A Rifampin ADP-ribosyl t 22.5 16 0.00047 15.3 -0.6 33 35-72 25-57 (111) 446 >2obx_A DMRL synthase 1, 6,7-d 22.4 35 0.001 12.2 9.1 95 143-250 9-117 (157) 447 >3k9f_C DNA topoisomerase 4 su 22.4 35 0.001 12.2 2.0 27 214-240 5-32 (43) 448 >2b39_A C3; thioester, immune 22.2 35 0.001 12.2 2.8 70 35-106 22-102 (142) 449 >1al3_A Cys regulon transcript 22.2 36 0.0011 12.2 3.0 93 146-261 95-189 (227) 450 >1yzf_A Lipase/acylhydrolase; 22.1 36 0.0011 12.2 4.7 66 146-219 2-78 (195) 451 >2j58_A WZA, outer membrane li 22.1 36 0.0011 12.2 3.3 31 15-45 53-83 (84) 452 >3dv8_A Transcriptional regula 22.1 34 0.001 12.3 1.0 43 259-301 92-134 (146) 453 >3ga2_A Endonuclease V; alpha- 22.0 36 0.0011 12.2 2.6 34 241-274 159-198 (219) 454 >2rfg_A Dihydrodipicolinate sy 22.0 36 0.0011 12.2 6.7 84 153-259 108-194 (243) 455 >3ezx_A MMCP 1, monomethylamin 22.0 36 0.0011 12.2 5.9 112 144-274 6-126 (130) 456 >2z1n_A Dehydrogenase; reducta 21.9 36 0.0011 12.2 7.4 79 150-236 35-113 (260) 457 >2hsg_A Glucose-resistance amy 21.8 36 0.0011 12.2 7.3 96 146-262 3-102 (124) 458 >3cs3_A Sugar-binding transcri 21.7 36 0.0011 12.1 8.2 87 145-259 8-98 (147) 459 >2zsj_A Threonine synthase; PL 21.6 36 0.0011 12.1 3.6 83 179-279 58-148 (220) 460 >2f9y_B Acetyl-coenzyme A carb 21.6 36 0.0011 12.1 6.1 133 130-269 7-168 (249) 461 >3g85_A Transcriptional regula 21.6 36 0.0011 12.1 3.5 93 145-258 11-108 (155) 462 >3hs3_A Ribose operon represso 21.6 36 0.0011 12.1 7.0 77 146-246 11-91 (151) 463 >3c1m_A Probable aspartokinase 21.6 36 0.0011 12.1 2.9 14 210-223 33-46 (304) 464 >1rvv_A Riboflavin synthase; t 21.3 37 0.0011 12.1 11.0 102 139-253 6-121 (154) 465 >3gg8_A Pyruvate kinase; malar 21.3 37 0.0011 12.1 3.8 46 457-504 14-70 (96) 466 >1zyo_A Serine protease; beta- 21.2 37 0.0011 12.1 2.1 11 81-91 107-117 (191) 467 >1v8z_A Tryptophan synthase be 21.0 37 0.0011 12.0 3.2 35 181-222 88-123 (265) 468 >1duv_G Octase-1, ornithine tr 21.0 37 0.0011 12.0 7.5 99 140-260 38-143 (183) 469 >1zh2_A KDP operon transcripti 20.9 37 0.0011 12.0 7.9 83 146-255 2-87 (121) 470 >1mio_B Nitrogenase molybdenum 20.8 38 0.0011 12.0 1.7 44 187-238 46-89 (108) 471 >1h7e_A 3-deoxy-manno-octuloso 20.8 38 0.0011 12.0 1.3 16 146-161 43-58 (245) 472 >1tdz_A Formamidopyrimidine-DN 20.8 38 0.0011 12.0 1.4 42 226-271 4-54 (136) 473 >2w19_A 3-deoxy-D-arabino-hept 20.7 38 0.0011 12.0 5.4 85 185-290 321-406 (472) 474 >1tjy_A Sugar transport protei 20.6 38 0.0011 12.0 9.6 85 145-246 3-91 (165) 475 >1dxh_A Ornithine carbamoyltra 20.6 38 0.0011 12.0 10.9 125 107-259 14-143 (181) 476 >2qq6_A Mandelate racemase/muc 20.6 38 0.0011 12.0 4.5 12 209-220 96-107 (269) 477 >1jdp_A NPR-C, atrial natriure 20.5 38 0.0011 11.9 9.2 96 143-254 7-122 (209) 478 >2d00_A V-type ATP synthase su 20.4 38 0.0011 11.9 4.5 78 144-247 2-79 (79) 479 >2iss_D Glutamine amidotransfe 20.3 38 0.0011 11.9 7.1 80 140-245 15-96 (208) 480 >2i6u_A Otcase, ornithine carb 20.1 39 0.0011 11.9 11.2 103 135-259 28-137 (178) 481 >1dcf_A ETR1 protein; beta-alp 20.1 39 0.0011 11.9 7.1 88 144-257 6-100 (136) 482 >1ofu_A FTSZ, cell division pr 20.1 39 0.0011 11.9 7.3 66 144-215 98-164 (320) 483 >3g51_A Ribosomal protein S6 k 20.0 35 0.001 12.2 0.7 36 228-267 39-74 (83) 484 >1b9m_A Protein (mode); DNA-bi 20.0 39 0.0011 11.9 2.4 30 265-294 35-64 (112) No 1 >>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:1-110) Probab=97.71 E-value=0.00034 Score=57.07 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=66.1 Q ss_pred CCCEEEEEEECCCCCC-CCCCEEE--EEEECCCCEEEEEEECCC--CCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEE Q ss_conf 1718999997054356-8886279--998748947999997352--1058668145988999999667528843799999 Q gi|254780791|r 32 LSHVCVRGEISGYRGI-HSSGHAY--FSLKDNHSRIDAIIWKGT--LNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIE 106 (529) Q Consensus 32 ~~~~~v~gEis~~~~~-~~sGH~Y--f~lkd~~a~i~~~~~~~~--~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~ 106 (529) -..|++.|.|++.+.. .++|+-| |+|-|..+.|.|++|... +....-.+++|.-|++.|+++++.-.|.+++.+. T Consensus 17 ~~~v~i~G~V~~~~~~~tK~G~~~~~~~l~D~tg~ie~~~F~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~~l~v~ 96 (110) T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVRDLVIIAN 96 (110) T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTTEEEEEEE T ss_pred CCEEEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEE T ss_conf 67699999998778787058988999999827886899995587432889850679968999998851577774278721 Q ss_pred EEEEC Q ss_conf 71016 Q gi|254780791|r 107 SLIPS 111 (529) Q Consensus 107 ~i~~~ 111 (529) .|.+. T Consensus 97 ~i~~i 101 (110) T 3f2b_A 97 DLNEI 101 (110) T ss_dssp EEEEE T ss_pred EEEEC T ss_conf 23654 No 2 >>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} (A:160-248) Probab=96.89 E-value=0.0012 Score=52.23 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=64.4 Q ss_pred CEEEEEEECCCCCCC-CCCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEC Q ss_conf 189999970543568-8862-79998748947999997352105866814598899999966752884379999971016 Q gi|254780791|r 34 HVCVRGEISGYRGIH-SSGH-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPS 111 (529) Q Consensus 34 ~~~v~gEis~~~~~~-~sGH-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~ 111 (529) .+-|.|+|.+.+..+ ++|- +.++|.|..+.|.|++|...+......++.|..+++.|+|..-.-+|++|++..+++.. T Consensus 8 ~v~i~g~V~~~~~~~~~~~~~~~~~l~D~tg~i~~v~F~~~~~~~~~~l~~g~~~~v~Gkv~~~~~~g~~~i~~p~~~~~ 87 (89) T 1gm5_A 8 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEVTPK 87 (89) T ss_dssp CCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEEEEECSCCTTSSCCEEEEEEECS T ss_pred EEEEEEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEECCEEECC T ss_conf 79999999997555579971189999989868999997987999765035999899999998768788699629877435 No 3 >>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* (A:1024-1128) Probab=96.74 E-value=0.0065 Score=45.57 Aligned_cols=76 Identities=14% Similarity=0.298 Sum_probs=64.9 Q ss_pred CCEEEEEEECCCCCC-CCCCEE--EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE Q ss_conf 718999997054356-888627--99987489479999973521058668145988999999667528843799999710 Q gi|254780791|r 33 SHVCVRGEISGYRGI-HSSGHA--YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLI 109 (529) Q Consensus 33 ~~~~v~gEis~~~~~-~~sGH~--Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~ 109 (529) ..+++.|-|++++.. .++|.. +|+|-|..+.+.|++|...+....-.++.|.-|++.|+++ | +++++|.++.+. T Consensus 20 ~~v~i~G~v~~~~~~~tk~G~~~a~~~leD~tg~~e~~~F~~~~~~~~~~l~~~~~v~i~g~v~-~--~~~~~l~v~~i~ 96 (105) T 2hpi_A 20 PKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVE-K--GEELRVLAQAVW 96 (105) T ss_dssp CEEEEEEEECCC------------CEEEEETTEEEEEC-------------CTTCEEEEEEEEC--------CEEEEEEE T ss_pred CEEEEEEEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEE-E--CCCEEEEEEECC T ss_conf 7899999998999701789997999999989987899984799999988851498799999999-7--895289996636 Q ss_pred EC Q ss_conf 16 Q gi|254780791|r 110 PS 111 (529) Q Consensus 110 ~~ 111 (529) +- T Consensus 97 ~l 98 (105) T 2hpi_A 97 TL 98 (105) T ss_dssp EH T ss_pred CH T ss_conf 59 No 4 >>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} (A:) Probab=96.52 E-value=0.048 Score=37.84 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=76.2 Q ss_pred CCCCCCCC-CCCHHHHHHHHHH------HH--HH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCC-EEEEEEECCCCC Q ss_conf 88888898-6229999999999------97--40-01718999997054356888627999874894-799999735210 Q gi|254780791|r 6 QKNSLDHP-EYSVSELSYHLKH------IV--ES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHS-RIDAIIWKGTLN 74 (529) Q Consensus 6 ~~~~~~~~-~~svs~l~~~i~~------~l--~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a-~i~~~~~~~~~~ 74 (529) .+|..+.. |.++++|...... .+ .+ .+..|+|.|-|.+++. ..+.+-|+|-|..+ -|.|++|..... T Consensus 11 ~~p~~~~~~pv~i~~l~~~~~~~~~~~~~~~~~~~~i~~V~ivG~V~~~~~--~~~~~~~~IdD~TG~~i~~~~~~~~~~ 88 (159) T 3kf6_A 11 QFPTLSRWNPMFISDVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDI--YEGKHVLTVDDCSGMVLRVVFIIQDDF 88 (159) T ss_dssp -----CCCCBCCHHHHTTCBCCCC---CCEEETTEEECEEEEEEEEEEEEE--ETTEEEEEEECSSSCEEEEEEEGGGCH T ss_pred CCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEEEEEEEEE--ECCEEEEEEECCCCCCEEEEEECCCCC T ss_conf 185210044023464877764878666479999998899999999998999--545599999889999179999876774 Q ss_pred CC---CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCC Q ss_conf 58---6681459889999996675288437999997101680 Q gi|254780791|r 75 KI---EFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGS 113 (529) Q Consensus 75 ~~---~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~ 113 (529) .- .-..+.|+-|.|.|++..| +|.-|+.+..|.+.+. T Consensus 89 ~~~~~~~~i~~G~~V~V~G~i~~~--~~~~~i~~~~i~~v~d 128 (159) T 3kf6_A 89 SMSKRAISMSPGNVVCVFGKINSF--RSEVELIAQSFEELRD 128 (159) T ss_dssp HHHHHHTTCCTTCEEEEEEEEECS--SSSCEEEEEEEEEECS T ss_pred CCCCCCCCCCCCCEEEEEEEEEEC--CCEEEEEEEEEEEECC T ss_conf 334435568999599999999662--9888999999999099 No 5 >>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} (A:) Probab=96.35 E-value=0.094 Score=35.23 Aligned_cols=116 Identities=15% Similarity=0.200 Sum_probs=82.8 Q ss_pred CCCCCCHHHHHHHHHH----HHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCE-EEEEEECCCCCC--CCCCCCC Q ss_conf 8986229999999999----9740-017189999970543568886279998748947-999997352105--8668145 Q gi|254780791|r 11 DHPEYSVSELSYHLKH----IVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSR-IDAIIWKGTLNK--IEFLPEE 82 (529) Q Consensus 11 ~~~~~svs~l~~~i~~----~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~-i~~~~~~~~~~~--~~~~~~~ 82 (529) +.=|.||++|...-.. .+.+ .+..|+|+|=|.++.. .++.+-|+|-|..+. |.|.+|...... ..-..++ T Consensus 45 ~l~PvtIk~i~~a~~~~~~~~i~g~~v~~V~ivG~V~~i~~--~~~~~~~~idDgTG~~i~v~~~~~~~~~~~~~~~i~~ 122 (270) T 2pi2_A 45 HIVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK--APTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPP 122 (270) T ss_dssp CCEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE--CSSEEEEEEECSSSSCEEEEEECC-------CCCCCT T ss_pred CEEEEEHHHHHHCCCCCCCEEECCEEEEEEEEEEEEEEEEE--CCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCC T ss_conf 46537899986270679976999999899999999968986--5866899997799984799997179986444651447 Q ss_pred CCEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHHH-HHHHHHHHHHHHH Q ss_conf 988999999667528843799999710168-00799-9999999976540 Q gi|254780791|r 83 GIEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTLL-TALEKRKKKLLEE 130 (529) Q Consensus 83 G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~-~~~e~lk~~L~~e 130 (529) |+-|.|.|++..| +|.-++.+..|.|.. ..++. -.+|-+...|..+ T Consensus 123 g~yVrV~G~lk~f--~~~~~i~~~~I~~V~d~Nei~~H~levi~~~l~~~ 170 (270) T 2pi2_A 123 ETYVKVAGHLRSF--QNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLS 170 (270) T ss_dssp TCEEEEEEEEEEE--TTEEEEEEEEEEECSCTHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEEECCC--CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC T ss_conf 9889999997323--98578999999990685378899999999999752 No 6 >>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} (A:38-158) Probab=96.28 E-value=0.062 Score=36.84 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=74.0 Q ss_pred CCCHHHHHHHHHHHHHH--CC--CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC-----CCCCCCCC Q ss_conf 62299999999999740--01--71899999705435688862799987489479999973521058-----66814598 Q gi|254780791|r 14 EYSVSELSYHLKHIVES--NL--SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI-----EFLPEEGI 84 (529) Q Consensus 14 ~~svs~l~~~i~~~l~~--~~--~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~-----~~~~~~G~ 84 (529) ..|+.++....+...+. .+ ..|+|.|=|.+.|. .++=++++|.|..+.+.|++.......- .-.+..|+ T Consensus 5 t~~~~~~~~~~~~~~~~~~~~~g~~V~i~GwV~~iR~--~gk~~Fi~l~d~~~~~Q~~~~~~~~~~~~~~~~~~~l~~g~ 82 (121) T 1e1o_A 5 DHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRI--MGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGD 82 (121) T ss_dssp SCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTC T ss_pred CCCHHHHHHHHCCCCCHHHHCCCCEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 7699999998604573024318988999886644536--89948999981883599999788583799999998456774 Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECC Q ss_conf 8999999667528843799999710168 Q gi|254780791|r 85 EFLVIGKITTFPGSSKYQIIIESLIPSG 112 (529) Q Consensus 85 ~v~~~g~~~~y~~~g~~ql~v~~i~~~g 112 (529) -|.|.|.+. -.+.|.|.|.++.+...+ T Consensus 83 ~v~V~G~v~-~~~~g~lEl~~~~i~ils 109 (121) T 1e1o_A 83 IIGARGTLF-KTQTGELSIHCTELRLLT 109 (121) T ss_dssp EEEEEEEEE-ECTTCCEEEEEEEEEEEE T ss_pred EEEEEEEEE-CCCCCCEEEEEEEEEEEE T ss_conf 899994884-389975899999999985 No 7 >>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B (D:) Probab=96.26 E-value=0.15 Score=33.32 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=77.1 Q ss_pred CCCCCHHHHHHHHHH----HHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC---CCCCCCC Q ss_conf 986229999999999----9740-0171899999705435688862799987489479999973521058---6681459 Q gi|254780791|r 12 HPEYSVSELSYHLKH----IVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI---EFLPEEG 83 (529) Q Consensus 12 ~~~~svs~l~~~i~~----~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~---~~~~~~G 83 (529) .=|.++++|...-+. .+.+ .+..|+|.|=|.++.. .+...=|+|-|..+.|.|+.|......- .-..++| T Consensus 6 i~PvtI~~i~~a~~~~~~~~i~~~~i~~V~ivG~V~~v~~--~~~~~~y~idDgTG~i~~~~~~~~~~~~~~~~~~i~~g 83 (132) T 3kdf_D 6 IVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK--APTNIVYKIDDXTAAPXDVRQWVDTDDTSSENTVVPPE 83 (132) T ss_dssp CEECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEE--CSSEEEEEEECSSSSCEEEEEEC---------CCCCTT T ss_pred EEEEEHHHHHCCCCCCCCEEECCEEEEEEEEEEEEEEEEE--CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC T ss_conf 2626999985080789978999999999999999989997--78779999988999958999978967571203326689 Q ss_pred CEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHHH-HHHHHHHHHHH Q ss_conf 88999999667528843799999710168-00799-99999999765 Q gi|254780791|r 84 IEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTLL-TALEKRKKKLL 128 (529) Q Consensus 84 ~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~-~~~e~lk~~L~ 128 (529) +-|-|.|++..| +|.-++.+..|.|.. .-++. -.+|-+..+|. T Consensus 84 ~~V~V~G~i~~~--~~~~~i~~~~i~~v~d~ne~~~h~lev~~~~l~ 128 (132) T 3kdf_D 84 TYVKVAGHLRSF--QNKKSLVAFKIXPLEDXNEFTTHILEVINAHXV 128 (132) T ss_dssp CEEEEEEEEEEE--TTEEEEEEEEEEECSSTHHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEEEC--CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 899999999501--985899999999907957999999999999873 No 8 >>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A (A:) Probab=96.08 E-value=0.089 Score=35.43 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=56.0 Q ss_pred CCCCEEEEEEECCCCCCCCCCEEEEE--EECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEEE Q ss_conf 01718999997054356888627999--874894799999735210586681459889999-996675288437999997 Q gi|254780791|r 31 NLSHVCVRGEISGYRGIHSSGHAYFS--LKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIES 107 (529) Q Consensus 31 ~~~~~~v~gEis~~~~~~~sGH~Yf~--lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~~ 107 (529) ...++-|+|-|.... ...+++.+|+ |.|+.+.|++++|.-.+ .-.++.|+-|.+. |.++.| +|.++|.+.. T Consensus 14 ~~~~v~i~~~V~~~~-~~~~~~~~~~~~l~DetG~I~~t~W~d~~---~~~i~~G~~v~i~~~~v~~~--~g~~el~~~~ 87 (109) T 2kbn_A 14 NGQWANLKAKVIQLW-ENTHESISQVGLLGDETGIIKFTIWKNAE---LPLLEQGESYLLRSVVVGEY--NDRFQVQVNK 87 (109) T ss_dssp TTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTTCCEEEEEEGGGC---CCCCCTTCEEEEEEEEEEEE--TTEEEEEECS T ss_pred CCCCEEEEEEEEEEE-CCCCCEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCCEEEEEEEEEEEE--CCEEEEEECC T ss_conf 998289999999974-79995299999998898759999967756---65467898999940799477--8827999899 Q ss_pred ---EEEC Q ss_conf ---1016 Q gi|254780791|r 108 ---LIPS 111 (529) Q Consensus 108 ---i~~~ 111 (529) |++. T Consensus 88 ~~~i~~~ 94 (109) T 2kbn_A 88 NSSIEKL 94 (109) T ss_dssp SSEEEEC T ss_pred CCEEEEC T ss_conf 8479988 No 9 >>3e9h_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm; HET: KAA; 2.10A {Bacillus stearothermophilus} PDB: 3e9i_A* (A:1-145) Probab=95.78 E-value=0.084 Score=35.64 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=71.1 Q ss_pred CCHHHHHHHHHHHHHH---CC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEE Q ss_conf 2299999999999740---01-7189999970543568886279998748947999997352105----86681459889 Q gi|254780791|r 15 YSVSELSYHLKHIVES---NL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEF 86 (529) Q Consensus 15 ~svs~l~~~i~~~l~~---~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v 86 (529) ++++++........+. .. ..|+|.|=|.++|. .++.+++.|.|....+.|++....... .--.+.-|+-| T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~~V~v~GrV~~~R~--~gk~~Fi~lrd~~~~iQ~~~~~~~~~~~~~~~~~~l~~g~~v 112 (145) T 3e9h_A 35 HKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRG--MGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIV 112 (145) T ss_dssp CCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEC--CSSEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEE T ss_pred CCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHHEEEEEEEE T ss_conf 849999998613375533358978999998770876--898298999819868999992774779998552146654578 Q ss_pred EEEEEEEEECCCCEEEEEEEEEEECC Q ss_conf 99999667528843799999710168 Q gi|254780791|r 87 LVIGKITTFPGSSKYQIIIESLIPSG 112 (529) Q Consensus 87 ~~~g~~~~y~~~g~~ql~v~~i~~~g 112 (529) .|.|.+- =.+.|++.+.++.|+.-+ T Consensus 113 ~V~G~v~-~~~~g~lEi~~~~i~ils 137 (145) T 3e9h_A 113 GVRGTMF-KTKVGELSIKVSSYEFLT 137 (145) T ss_dssp EEEEEEE-ECTTCCEEEEEEEEEEEE T ss_pred EEEEEEE-CCCCCCCCCEEEEEEEEE T ss_conf 8850372-157765332035799974 No 10 >>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} (A:1-104) Probab=95.65 E-value=0.23 Score=31.73 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=58.8 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEEEEEEEEE Q ss_conf 71899999705435688862799987489479999973521058668145988999999667528--8437999997101 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPG--SSKYQIIIESLIP 110 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~--~g~~ql~v~~i~~ 110 (529) ..|+|.|=|.+.|. .++.++++|.|..+.+.|++... ..+..|.-|.+.|.+. -.+ .|.|.|.+++++. T Consensus 14 ~~V~i~GwV~~~R~--~gk~~Fi~LrD~sg~~q~~~~~~------~~l~~~~~V~v~G~v~-~~~~~~~~~Ei~v~~i~i 84 (104) T 1n9w_A 14 QEVELLGFLHWRRD--LGRIQFLLLRDRSGVVQVVTGGL------KLPLPESALRVRGLVV-ENAKAPGGLEVQAKEVEV 84 (104) T ss_dssp SEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEESC------CCCCTTCEEEEEEEEE-ECTTSTTSEEEEEEEEEE T ss_pred CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEECCC------CCCCCCCEEEEEEEEE-CCCCCCCCEEEEEEEEEE T ss_conf 98999999997981--89879999994990099998766------3679998899999998-369999788999839999 Q ss_pred CC Q ss_conf 68 Q gi|254780791|r 111 SG 112 (529) Q Consensus 111 ~g 112 (529) -| T Consensus 85 l~ 86 (104) T 1n9w_A 85 LS 86 (104) T ss_dssp EE T ss_pred EE T ss_conf 97 No 11 >>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} (A:30-156) Probab=95.50 E-value=0.17 Score=32.91 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=72.8 Q ss_pred CCCCHHHHHHHHHHHHHHC-C--CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC----C--CCCCCC Q ss_conf 8622999999999997400-1--71899999705435688862799987489479999973521058----6--681459 Q gi|254780791|r 13 PEYSVSELSYHLKHIVESN-L--SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI----E--FLPEEG 83 (529) Q Consensus 13 ~~~svs~l~~~i~~~l~~~-~--~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~----~--~~~~~G 83 (529) +.+|++++........... + ..|+|.|=|.+.|. ..++=++.+|.|..+.+.|++-......- . -.+.-| T Consensus 4 ~t~~~~~~~~~~~~~~~~~~~~g~~v~v~G~V~~~R~-~g~~~~Fi~lrD~~~~~Q~~~~~~~~~~~~~~~~~~~~l~~g 82 (127) T 3bju_A 4 VDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRA-SGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRG 82 (127) T ss_dssp CCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEE-SSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTT T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEC-CCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHCEEEEE T ss_conf 8772999999741578764258988999999884886-899389999967977999999688678899999974816787 Q ss_pred CEEEEEEEEEEECCCCEEEEEEEEEEECC Q ss_conf 88999999667528843799999710168 Q gi|254780791|r 84 IEFLVIGKITTFPGSSKYQIIIESLIPSG 112 (529) Q Consensus 84 ~~v~~~g~~~~y~~~g~~ql~v~~i~~~g 112 (529) +-|.|.|.+. =.+.|.|.|.++.|+.-+ T Consensus 83 ~~V~v~G~v~-~t~~ge~El~~~~i~il~ 110 (127) T 3bju_A 83 DIIGVQGNPG-KTKKGELSIIPYEITLLS 110 (127) T ss_dssp CEEEEEEEEE-ECTTCCEEEEEEEEEEEE T ss_pred EEEEEEEEEC-CCCCCCCCCCCCCCHHHC T ss_conf 5899944552-334664322220000001 No 12 >>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:244-395) Probab=95.19 E-value=0.24 Score=31.57 Aligned_cols=135 Identities=12% Similarity=0.004 Sum_probs=79.1 Q ss_pred HCCCCCCCCC--CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 1226100163--10265289998478425899999986305975899972100111103679999999974100357677 Q gi|254780791|r 131 GLFSDQHKNP--IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPR 208 (529) Q Consensus 131 Glfd~~~k~~--lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~ 208 (529) -+||...... .|.-..+|||||...|.+.-=.=......+.. --|+=+.|...+.....+|+.+.... . T Consensus 4 el~d~a~~l~~~~~~~g~rv~iis~sGG~~~~~~D~~~~~G~~~---~NPiDl~g~~~~~~~~~~l~~l~~d~------~ 74 (152) T 2fp4_B 4 PIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKP---ANFLDLGGGVKESQVYQAFKLLTADP------K 74 (152) T ss_dssp HHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCB---CEEEECCSSCCHHHHHHHHHHHHHCT------T T ss_pred HHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC---EEEEEECCCCCHHHHHHHHHHHHCCC------C T ss_conf 57889887599710356627798447225566899999726871---16887337776788999999997199------9 Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC-----CCCCCHHHHHHH Q ss_conf 758999516888444220076999999974890488520577752589886412-----377721456763 Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL-----RAPTPTGAAEMA 274 (529) Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~-----Ra~TPTaAAEla 274 (529) +|.|++.=.+|....-+.+.....+..=...+.|++.-+|...-..-.....+. -+.||..|+..+ T Consensus 75 vd~iiv~~~~~~~~~~~~~~~~i~~~~~~~~kp~v~~~~~g~~~~~~~~~l~~~gipv~~f~~~e~av~al 145 (152) T 2fp4_B 75 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKA 145 (152) T ss_dssp CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHH T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHH T ss_conf 87899998087413699999999999952999758999998988999999997799748737999999999 No 13 >>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} (A:1-161) Probab=95.15 E-value=0.25 Score=31.43 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=59.7 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC-----CCCCCCCCEEEEEEEEEEECC-------CCE Q ss_conf 71899999705435688862799987489479999973521058-----668145988999999667528-------843 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI-----EFLPEEGIEFLVIGKITTFPG-------SSK 100 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~-----~~~~~~G~~v~~~g~~~~y~~-------~g~ 100 (529) ..|+|.|=|.+.|. .++.++++|.|....|.|++.......- --.+.-|+-|.|.|.+- -.| .|. T Consensus 63 ~~V~v~GrV~~~R~--~gk~~Fi~lrD~~~~iQ~~~~~~~~~~~~~~~~~~~l~~g~~v~v~G~v~-~~~~~~~~~~~g~ 139 (161) T 3i7f_A 63 KTVTIRARVQAVRG--KGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVK-AVEKPIEKATQQD 139 (161) T ss_dssp CEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEE-ECSSCCTTSSSCS T ss_pred CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEEE-CCCCCCCCCCCCC T ss_conf 98999899885875--89869999981880489999789888699999996399853899999997-4688766689985 Q ss_pred EEEEEEEEEECC Q ss_conf 799999710168 Q gi|254780791|r 101 YQIIIESLIPSG 112 (529) Q Consensus 101 ~ql~v~~i~~~g 112 (529) |.|.|+.+..-+ T Consensus 140 ~El~v~~i~ils 151 (161) T 3i7f_A 140 VEIHVTSIAVVS 151 (161) T ss_dssp EEEEEEEEEEEE T ss_pred EEEEEEEEEEEE T ss_conf 799964899986 No 14 >>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} (A:27-201) Probab=95.13 E-value=0.15 Score=33.51 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=51.6 Q ss_pred CCCCCCCEEEEEECCCHHH--HH-HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 3102652899984784258--99-99998630597589997210011110367999999997410035767775899951 Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAV--IR-DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529) Q Consensus 140 ~lP~~p~~i~vits~~~a~--~~-D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529) -+..+-+|+.|||+++... +. .+...+.+. .+ .+-..++++-....+.++++.+.... +| .||+- T Consensus 20 ~l~~~g~~~livt~~~~~~~~~~~~v~~~l~~~---~~-~v~~~~~~~~~~~~v~~~~~~~~~~~-------~d-~iiai 87 (175) T 1oj7_A 20 QIPHDARVLITYGGGSVKKTGVLDQVLDALKGM---DV-LEFGGIEPNPAYETLMNAVKLVREQK-------VT-FLLAV 87 (175) T ss_dssp HSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTS---EE-EEECCCCSSCBHHHHHHHHHHHHHHT-------CC-EEEEE T ss_pred HHHCCCCEEEEECCCHHHHCCHHHHHHHHHCCC---CE-EEEECCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEC T ss_conf 986799689998951687754999999981899---47-99918137989999999999997549-------97-89971 Q ss_pred CCCCHHHH Q ss_conf 68884442 Q gi|254780791|r 217 GGGSIEDL 224 (529) Q Consensus 217 GGGS~eDL 224 (529) ||||.-|+ T Consensus 88 GGGsv~D~ 95 (175) T 1oj7_A 88 GGGSVLDG 95 (175) T ss_dssp ESHHHHHH T ss_pred CCCCCCCH T ss_conf 78777307 No 15 >>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (B:238-388) Probab=95.12 E-value=0.36 Score=30.06 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=77.1 Q ss_pred HHCCCCCCCCCC--CCCCCEEEEEECCCHHHHH--HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 012261001631--0265289998478425899--999986305975899972100111103679999999974100357 Q gi|254780791|r 130 EGLFSDQHKNPI--PFIPKIIAVITSPTGAVIR--DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRT 205 (529) Q Consensus 130 eGlfd~~~k~~l--P~~p~~i~vits~~~a~~~--D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~ 205 (529) |-+||....... +.-..+|||||...|.+.- |.+.-. -+.. --|+-+.|...+.....+|+.+.... T Consensus 2 eel~d~a~~l~~~~~~~g~rv~iis~sGG~~~~~~D~~~~~--G~~~---~NPvDl~g~~~~~~~~~~l~~~~~d~---- 72 (151) T 2nu8_B 2 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLH--GGEP---ANFLDVGGGATKERVTEAFKIILSDD---- 72 (151) T ss_dssp CHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHT--TCCB---CEEEECCSCCCHHHHHHHHHHHHTST---- T ss_pred CHHHHHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHC--CCCC---CEEEEECCCCCHHHHHHHHHHHHCCC---- T ss_conf 81267786588751646985678715126667799999983--9983---13676258887999999999997599---- Q ss_pred CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHCC-----CCCCCHHHHHHH Q ss_conf 67775899951688844422007699999997489048852057-7752589886412-----377721456763 Q gi|254780791|r 206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGH-ETDWTLADYAADL-----RAPTPTGAAEMA 274 (529) Q Consensus 206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGH-E~D~Tl~D~VAD~-----Ra~TPTaAAEla 274 (529) .+|+|++.=++|....-+...+...+..=...+.||++-+|. +.+.. .....+. .++||..|+..+ T Consensus 73 --~vd~i~v~~~~~~~~~~~~~~~i~~~~~~~~~k~~v~~~~~g~~~~~~-~~~l~~~gipv~~f~s~~~Av~al 144 (151) T 2nu8_B 73 --KVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELG-AKKLADSGLNIIAAKGLTDAAQQV 144 (151) T ss_dssp --TCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHH-HHHHHTTCSSEEECSSHHHHHHHH T ss_pred --CCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHH-HHHHHHCCCCEEECCCHHHHHHHH T ss_conf --876899998566010899999999999971999868999998987999-999996899848718999999999 No 16 >>1b8a_A Protein (aspartyl-tRNA synthetase); tRNA ligase,; HET: ATP; 1.90A {Pyrococcus kodakaraensis} (A:1-108) Probab=95.10 E-value=0.28 Score=30.97 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=60.8 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEEEEEEEEEEECCCC--EEEEEEE Q ss_conf 7189999970543568886279998748947999997352105----866814598899999966752884--3799999 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEFLVIGKITTFPGSS--KYQIIIE 106 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v~~~g~~~~y~~~g--~~ql~v~ 106 (529) ..|+|.|=|.+.|. .++..+++|.|..+.+.|++.+..... .--.+..|+-|.+.|.+. ..|++ ++.|.++ T Consensus 17 ~~V~v~GwV~~iR~--~g~~~Fi~LrD~~~~~Q~v~~~~~~~~~~~~~~~~l~~~s~v~v~G~v~-~~~~~~~~~El~~~ 93 (108) T 1b8a_A 17 QKVKVAGWVWEVKD--LGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVN-FTPKAKLGFEILPE 93 (108) T ss_dssp CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEE-ECTTSTTSEEEEEE T ss_pred CEEEEEEEEEEEEC--CCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEE-ECCCCCCCCEEEEE T ss_conf 98999999870883--8980999999398639999958979999999986799845999996999-37888756421011 Q ss_pred EEEECC Q ss_conf 710168 Q gi|254780791|r 107 SLIPSG 112 (529) Q Consensus 107 ~i~~~g 112 (529) +++.-+ T Consensus 94 ~i~ils 99 (108) T 1b8a_A 94 KIVVLN 99 (108) T ss_dssp EEEEEE T ss_pred EEECCC T ss_conf 111035 No 17 >>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} (A:) Probab=95.05 E-value=0.38 Score=29.76 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=57.2 Q ss_pred CCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 71899999705---43568886--2799987------489------4799999735210586681459889999996675 Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF 95 (529) Q Consensus 33 ~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y 95 (529) ..|-+.|.|+. ++. -.+| .+-|+|. |.+ -.|+|++|...+..+.-.++.|+.|.|.|++..+ T Consensus 20 N~v~L~G~l~~dpelR~-Tp~G~~v~~f~La~~s~~~e~g~~r~~~~~i~vv~~G~~Ae~~~~~l~KG~~V~V~G~L~~~ 98 (134) T 1v1q_A 20 NRLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH 98 (134) T ss_dssp EEEEEEEEEEEEEEEEE-CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEE T ss_pred EEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHCCCCCEEEEEEEEEEE T ss_conf 08999999777864569-99997699999841120035655213579999999959999998752889999999998860 Q ss_pred CC---CCEEEEEEEEEEECC Q ss_conf 28---843799999710168 Q gi|254780791|r 96 PG---SSKYQIIIESLIPSG 112 (529) Q Consensus 96 ~~---~g~~ql~v~~i~~~g 112 (529) .- .+++-|.|+.|+.-+ T Consensus 99 ~~kn~~~k~vl~a~~iefLd 118 (134) T 1v1q_A 99 KAKNGLSKMVLHAEQIELID 118 (134) T ss_dssp CTTTTSCEEEEEEEEEEETT T ss_pred ECCCCCCEEEEEEEEEEECC T ss_conf 05289967999998999901 No 18 >>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} (A:) Probab=95.03 E-value=0.16 Score=33.12 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=61.4 Q ss_pred CEEEEEEECC---CCCCCCCCEEE--EEE------ECCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE--E Q ss_conf 1899999705---43568886279--998------7489------47999997352105866814598899999966--7 Q gi|254780791|r 34 HVCVRGEISG---YRGIHSSGHAY--FSL------KDNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT--T 94 (529) Q Consensus 34 ~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~--~ 94 (529) .|-+.|-|.+ ++. -.+|..| |+| +|.+ .-+.|++|...+..+.-.++.|+.|.|.|++. . T Consensus 4 ~v~l~G~l~~dp~~r~-t~~g~~~~~f~la~~~~~~~~~~~~~~~~~~~v~~~~~~A~~~~~~l~kG~~V~V~G~l~~~~ 82 (104) T 1txy_A 4 RLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQXPVIVSGHENQAITHSITVGSRITVQGFISCHK 82 (104) T ss_dssp EEEEEEEEEEEEEEEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC-- T ss_pred EEEEEEEECCCCCEEE-CCCCCEEEEEEEEEEEEEEECCCEEEEEEEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEEEEC T ss_conf 9999999677874789-589966999999872079716660889999999999099899887547999999999988722 Q ss_pred EC-CCCEEEEEEEEEEECCC Q ss_conf 52-88437999997101680 Q gi|254780791|r 95 FP-GSSKYQIIIESLIPSGS 113 (529) Q Consensus 95 y~-~~g~~ql~v~~i~~~g~ 113 (529) |+ +.|...+.++.|+.-+- T Consensus 83 ~~dkdg~~~~~~~~i~~l~~ 102 (104) T 1txy_A 83 AKNGLSKXVLHAEQIELIDS 102 (104) T ss_dssp ------CCEEEEEEEEEC-- T ss_pred CCCCCCEEEEEEEEEEEECC T ss_conf 62899629999999999517 No 19 >>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} (A:) Probab=94.89 E-value=0.18 Score=32.74 Aligned_cols=79 Identities=16% Similarity=0.359 Sum_probs=58.3 Q ss_pred CCCEEEEEEEC---CCCCCCCCCEEEE--EEE------CC---------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE Q ss_conf 17189999970---5435688862799--987------48---------9479999973521058668145988999999 Q gi|254780791|r 32 LSHVCVRGEIS---GYRGIHSSGHAYF--SLK------DN---------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529) Q Consensus 32 ~~~~~v~gEis---~~~~~~~sGH~Yf--~lk------d~---------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529) +..|-|.|-|. .++ ...+|+.|. +|. |. .--+.|++|...+..+.-.++.|+.|+|.|+ T Consensus 4 mn~v~l~G~l~~dPe~~-~~~~g~~~~~~~ia~~~~~~~~~~~~~~~~~t~~~~v~~~~~~Ae~~~~~l~KG~~V~V~G~ 82 (199) T 3eiv_A 4 ETVITVVGNLVDDPELR-FTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGR 82 (199) T ss_dssp CCEEEEEEEESSCCEEE-ECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE T ss_pred CCEEEEEEEECCCCEEE-ECCCCCEEEEEEEEECCCCEECCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCEEEEEEE T ss_conf 78799998807799898-88999989999999748702056783325543465666230679999974689999999989 Q ss_pred EEE--EC-----CCCEEEEEEEEEEEC Q ss_conf 667--52-----884379999971016 Q gi|254780791|r 92 ITT--FP-----GSSKYQIIIESLIPS 111 (529) Q Consensus 92 ~~~--y~-----~~g~~ql~v~~i~~~ 111 (529) +.. |. .++.+.|.+++|... T Consensus 83 l~~~~~~d~dG~~~~~~~i~a~~i~~~ 109 (199) T 3eiv_A 83 LKQRSYEDREGVKRTVYELDVDEVGAS 109 (199) T ss_dssp EEEEC--------CCEEEEEEEEEEEE T ss_pred EEECEEECCCCCEEEEEEEEEEECCCC T ss_conf 882506999998976999995252631 No 20 >>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A (A:) Probab=94.85 E-value=0.32 Score=30.48 Aligned_cols=80 Identities=20% Similarity=0.209 Sum_probs=60.2 Q ss_pred CCCCEEEEEEECC---CCCCCCCCE--EEEEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 0171899999705---435688862--79998------7489-------4799999735210586681459889999996 Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGH--AYFSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKI 92 (529) Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH--~Yf~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~ 92 (529) ++..|-+.|=|.+ ++. -.+|. +.|+| +|.. .-++|++|...+..+.-.++.|+.|.|.|++ T Consensus 4 ~mn~v~l~G~l~~~~~~~~-~~~g~~~~~~~la~~~~~~~~~~~~~~~~~~~~v~~~~~~A~~~~~~l~kG~~v~v~G~l 82 (264) T 2fxq_A 4 GLNQVFLIGTLTARPDMRY-TPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264) T ss_dssp CEEEEEEEEEESSCCCCEE-CTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE T ss_pred CCEEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCEEECCEEEEEEECHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 6508999999367987999-799988999999978977989999985358999998478878888715589789999898 Q ss_pred EE--EC----CCCEEEEEEEEEEEC Q ss_conf 67--52----884379999971016 Q gi|254780791|r 93 TT--FP----GSSKYQIIIESLIPS 111 (529) Q Consensus 93 ~~--y~----~~g~~ql~v~~i~~~ 111 (529) .. |. .+..+.++|+.|... T Consensus 83 ~~~~~~~~g~~~~~~~i~~~~i~~~ 107 (264) T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPL 107 (264) T ss_dssp EEC---------CCEEEEEEEEEEC T ss_pred ECCCEEECCEEEEEEEEEEEEEEEC T ss_conf 8158771990999999999997942 No 21 >>1ujn_A Dehydroquinate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} (A:1-160) Probab=94.74 E-value=0.15 Score=33.42 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=61.5 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 261001631026528999847842-5899999986305975899972100111103679999999974100357677758 Q gi|254780791|r 133 FSDQHKNPIPFIPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDI 211 (529) Q Consensus 133 fd~~~k~~lP~~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ 211 (529) |..+--..+|.+.+|+-|||.... ..+.|-+...-++..+.+..| ..+.++.....+.++++.+... ++| T Consensus 16 ~g~g~~~~l~~~~kk~liv~d~~~~~~~~~~i~~~l~~~~i~~~~~-~~~~~~~~~~~v~~~~~~~~~~-------~~d- 86 (160) T 1ujn_A 16 VGEGVLKEVPPLAGPAALLFDRRVEGFAQEVAKALGVRHLLGLPGG-EAAKSLEVYGKVLSWLAEKGLP-------RNA- 86 (160) T ss_dssp EESCGGGGSCCCSSCEEEEEEGGGHHHHHHHHHHHTCCCEEEECCS-GGGSSHHHHHHHHHHHHHHTCC-------TTC- T ss_pred ECCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHHHHHHHHHHHHHCC-------CCC- T ss_conf 8877898778875989999895489999999973588559997898-5648999999999999973103-------566- Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHH---HCCCEEEE Q ss_conf 99951688844422007699999997---48904885 Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIA---NSSIPIIS 245 (529) Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~---~~~iPVis 245 (529) .||+=||||.-|+ |++++ ...+|.|+ T Consensus 87 ~ivavGGGs~~D~--------aK~~a~~~~~~~p~i~ 115 (160) T 1ujn_A 87 TLLVVGGGTLTDL--------GGFVAATYLRGVAYLA 115 (160) T ss_dssp EEEEEESHHHHHH--------HHHHHHHBTTCCEEEE T ss_pred CEEEECCHHHHHH--------HHHHHHHHCCCCCEEC T ss_conf 4368524666678--------8887653137850331 No 22 >>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str} (A:1-104) Probab=94.54 E-value=0.34 Score=30.18 Aligned_cols=78 Identities=14% Similarity=0.093 Sum_probs=60.8 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCEEEEEEEEEEEC-CCCEEEEEEEEEEE Q ss_conf 7189999970543568886279998748947999997352105-866814598899999966752-88437999997101 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK-IEFLPEEGIEFLVIGKITTFP-GSSKYQIIIESLIP 110 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~-~~~~~~~G~~v~~~g~~~~y~-~~g~~ql~v~~i~~ 110 (529) ..|+|.|=|.+.|. .++..+++|.|..+.+.|++-...... .--.+..|+-|.+.|.+..-+ +.|+|.+.++.++. T Consensus 17 ~~V~v~Gwv~~~R~--~g~~~Fi~l~D~sg~~Q~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~~~~~~El~v~~i~i 94 (104) T 1wyd_A 17 KEVIWAGWVHLLRD--LGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITL 94 (104) T ss_dssp CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEEE T ss_pred CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEEECCCCCHHHHHCCCCCEEEEEEEEEECCCCCCCCEEECCCCCCC T ss_conf 98999998687875--8980999999498068999948953288995389962999997997788887653421232221 Q ss_pred CC Q ss_conf 68 Q gi|254780791|r 111 SG 112 (529) Q Consensus 111 ~g 112 (529) .| T Consensus 95 l~ 96 (104) T 1wyd_A 95 LS 96 (104) T ss_dssp EE T ss_pred CH T ss_conf 10 No 23 >>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} (A:1-111) Probab=94.49 E-value=0.33 Score=30.30 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=60.7 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC--CCCCCCCCEEEEEEEEEEEC--------CCCEEE Q ss_conf 71899999705435688862799987489479999973521058--66814598899999966752--------884379 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI--EFLPEEGIEFLVIGKITTFP--------GSSKYQ 102 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~--~~~~~~G~~v~~~g~~~~y~--------~~g~~q 102 (529) ..|+|.|=|.+.|. .++..++.|.|..+.+.|++-+...... --.+..|+-|.+.|.+..-+ +-|.+. T Consensus 16 ~~V~i~Gwv~~~R~--~gk~~Fi~LrD~~g~~Q~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~~~~~g~~E 93 (111) T 1c0a_A 16 QQVTLCGWVNRRRD--LGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIE 93 (111) T ss_dssp CEEEEEEEEEEEEE--CSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEE T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE T ss_conf 98999998640874--7994999999498679999968743289998539997689999899926877767777887489 Q ss_pred EEEEEEEECC Q ss_conf 9999710168 Q gi|254780791|r 103 IIIESLIPSG 112 (529) Q Consensus 103 l~v~~i~~~g 112 (529) +.|++++.-| T Consensus 94 i~v~~i~il~ 103 (111) T 1c0a_A 94 VLASSLTIIN 103 (111) T ss_dssp EEEEEEEEEE T ss_pred EEEEEEEEEE T ss_conf 9986999950 No 24 >>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} (A:1-136) Probab=94.49 E-value=0.19 Score=32.42 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=57.8 Q ss_pred CCEEEEEEECCCCCCCCCCEE-EEEEECCCCEEEEEEECCCCCCCC-------CCCCCCCEEEEEEEEEEECC------- Q ss_conf 718999997054356888627-999874894799999735210586-------68145988999999667528------- Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIE-------FLPEEGIEFLVIGKITTFPG------- 97 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~-------~~~~~G~~v~~~g~~~~y~~------- 97 (529) ..|||.|=|.+.|. .++.+ ++.|.|..+.+.|++-+.....-. -.+..|+-|.|.|.+. ..| T Consensus 37 ~~V~v~Gri~~~R~--~gk~~~Fi~l~d~~~~iQ~~~~~~~~~~~~~~~~~~~~~l~~es~V~v~G~v~-~~~~~~~~~~ 113 (136) T 1eov_A 37 KEVLFRARVHNTRQ--QGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVK-KVDEPIKSAT 113 (136) T ss_dssp CEEEEEEEEEEEEE--CSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEE-ECSSCCTTSS T ss_pred CEEEEEEEEECHHH--CCCCCEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEEEEEE-ECCCCCCCCC T ss_conf 88999898850320--79975899997398789999968855632599999983799974899999999-2688877888 Q ss_pred CCEEEEEEEEEEECC Q ss_conf 843799999710168 Q gi|254780791|r 98 SSKYQIIIESLIPSG 112 (529) Q Consensus 98 ~g~~ql~v~~i~~~g 112 (529) .|.|.|.|+.+..-+ T Consensus 114 ~g~lEl~v~~i~ils 128 (136) T 1eov_A 114 VQNLEIHITKIYTIS 128 (136) T ss_dssp EEEEEEEEEEEEEEE T ss_pred CCEEEEEEEEEEEEE T ss_conf 624899999999962 No 25 >>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} (A:1-188) Probab=94.32 E-value=0.29 Score=30.92 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=49.1 Q ss_pred CCCEEEEEECCCHHHHHHH---HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 6528999847842589999---9986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDI---LQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~---~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -.+++.|+|.++-...... +..+.+ .++.+.+|. -++++-...++.++++.+...+ +| .||+=|||| T Consensus 40 g~~~vlivt~~~~~~~~~~~~~~~~l~~-~~i~~~~~~-~~~~~~t~~~v~~~~~~~~~~~-------~d-~IiaiGGGs 109 (188) T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDE-TEISYEIFD-EVEENPSFDNVXKAVERYRNDS-------FD-FVVGLGGGS 109 (188) T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHH-TTCEEEEEE-EECSSCBHHHHHHHHHHHTTSC-------CS-EEEEEESHH T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHH-CCCEEEEEC-CCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEECCCC T ss_conf 9958999768688874599999999987-698599968-8678979999999999998539-------98-899928986 Q ss_pred HHHHHHCCHHHHHHHHH Q ss_conf 44422007699999997 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIA 237 (529) Q Consensus 221 ~eDL~~FN~e~laraI~ 237 (529) .-|+ |++++ T Consensus 110 ~iD~--------aK~~a 118 (188) T 1o2d_A 110 PXDF--------AKAVA 118 (188) T ss_dssp HHHH--------HHHHH T ss_pred CCHH--------HHHHH T ss_conf 1238--------99999 No 26 >>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A (A:1-108) Probab=94.15 E-value=0.27 Score=31.18 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=62.8 Q ss_pred HHCC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC----CCCCCCCCCEEEEEEEEEEEC-CCCEEE Q ss_conf 4001-7189999970543568886279998748947999997352105----866814598899999966752-884379 Q gi|254780791|r 29 ESNL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK----IEFLPEEGIEFLVIGKITTFP-GSSKYQ 102 (529) Q Consensus 29 ~~~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~----~~~~~~~G~~v~~~g~~~~y~-~~g~~q 102 (529) +... ..|.|.|-|.+.|. .++..+++|.|..+.+.|++....... .--.+.-|+-|.|.|.+.--+ +.|++. T Consensus 12 ~~~~gk~V~i~Gwv~~~R~--~g~~~Fi~lrD~s~~~Q~v~~~~~~~~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~E 89 (108) T 1x54_A 12 PELDGKKVRLAGWVYTNMR--VGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAE 89 (108) T ss_dssp GGGTTCEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEE T ss_pred HHHCCCEEEEEEEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCC T ss_conf 5879999999998661775--79929999980981489999589799999999964999569999999988988878754 Q ss_pred EEEEEEEECC Q ss_conf 9999710168 Q gi|254780791|r 103 IIIESLIPSG 112 (529) Q Consensus 103 l~v~~i~~~g 112 (529) +.|++++.-+ T Consensus 90 i~v~~i~il~ 99 (108) T 1x54_A 90 VHVEKLEVIQ 99 (108) T ss_dssp EEEEEEEEEE T ss_pred CCCCEEEECC T ss_conf 4420046424 No 27 >>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} (A:) Probab=94.05 E-value=0.47 Score=29.01 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=50.3 Q ss_pred CEEEEEEECCCCC----CCCCC---E-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEE Q ss_conf 1899999705435----68886---2-79998748947999997352105866814598899999-96675288437999 Q gi|254780791|r 34 HVCVRGEISGYRG----IHSSG---H-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQII 104 (529) Q Consensus 34 ~~~v~gEis~~~~----~~~sG---H-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~ 104 (529) .+-|.|.|-.+.. ..+.| + +-+.|-|+.+.|.+++|...+. ..++.|+-|.+.| +++.| +|.+||. T Consensus 16 ~v~v~g~V~~~~~~~~~~~~~g~~~~~~~~~i~D~Tg~i~~t~w~~~~~---~~l~~g~~v~i~g~~v~~~--~g~~~l~ 90 (105) T 3dm3_A 16 TATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD---IDVGRGDYVRVRGYIREGY--YGGLECT 90 (105) T ss_dssp EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG---SCCCTTCEEEEEEEEEECT--TSSEEEE T ss_pred EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEECCCCC---CCCCCCCEEEEEEEEECCC--CCCEEEE T ss_conf 5899999998258747992699888999999984998199999635222---5589999999970897368--8968999 Q ss_pred EEEEEEC Q ss_conf 9971016 Q gi|254780791|r 105 IESLIPS 111 (529) Q Consensus 105 v~~i~~~ 111 (529) +.....- T Consensus 91 ~~~~~~i 97 (105) T 3dm3_A 91 ANYVEIL 97 (105) T ss_dssp EEEEEEE T ss_pred ECCCEEE T ss_conf 5995397 No 28 >>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} (A:) Probab=93.98 E-value=0.32 Score=30.48 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=57.7 Q ss_pred CCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE Q ss_conf 71899999705---43568886279--998------7489-------479999973521058668145988999999667 Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT 94 (529) Q Consensus 33 ~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~ 94 (529) ..|-|.|-|.. ++. -.+|..| |+| +|.. .-++|++|...+..+...++.|+.|+|.|++.. T Consensus 3 N~v~l~G~l~~dp~~~~-~~~g~~~~~~~la~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~l~~ 81 (134) T 2vw9_A 3 NKVIMVGRLTRNVELKY-LPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTY 81 (134) T ss_dssp CCEEEEEEESSCCEEEE-CTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE T ss_pred EEEEEEEECCCCCEEEE-CCCCCEEEEEEEHHCCCCCCCCCCEEEEEEEEEEEEEEEHHHHHHHHHCCCEEEEEEEEEEE T ss_conf 27999999376978999-89998899999022665323578412431688747730023344464226629999986404 Q ss_pred --EC-CCC----EEEEEEEEEEECC Q ss_conf --52-884----3799999710168 Q gi|254780791|r 95 --FP-GSS----KYQIIIESLIPSG 112 (529) Q Consensus 95 --y~-~~g----~~ql~v~~i~~~g 112 (529) |. +.| .+.+.+++|...+ T Consensus 82 ~~~~~k~G~~~~~~~i~a~~i~~l~ 106 (134) T 2vw9_A 82 ESWMDQTGKKNSRHTITADSLQFMD 106 (134) T ss_dssp EEEECTTSCEEEEEEEEEEEEEECC T ss_pred EEEECCCCCEEEEEEEEEEEEEECC T ss_conf 5787689968999999997999745 No 29 >>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A (A:) Probab=93.94 E-value=0.64 Score=27.81 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=50.7 Q ss_pred CEEEEEEECCCC---C-CCCCCE--E--EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEE Q ss_conf 189999970543---5-688862--7--9998748947999997352105866814598899999966752884379999 Q gi|254780791|r 34 HVCVRGEISGYR---G-IHSSGH--A--YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIII 105 (529) Q Consensus 34 ~~~v~gEis~~~---~-~~~sGH--~--Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v 105 (529) .+.|.|-|.... . ..+.|+ . -+.|.|+.+.|++++|...+ .+.++.|+-|.+.|.+..| +|++||.+ T Consensus 13 ~vdi~~~V~~~~~~~~~~~k~g~~~~~~~~~i~D~Tg~i~~t~W~~~~---~~~~~~g~iv~i~g~v~~~--~g~~~l~~ 87 (97) T 3e0e_A 13 SGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELA---DFEVKKGDIAEVSGYVKQG--YSGLEISV 87 (97) T ss_dssp EEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGG---GCCCCTTCEEEEEEEEEEC----CEEEEE T ss_pred EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEECCHH---HCCCCCCCEEEEEEEEEEC--CCEEEEEE T ss_conf 457999999646744788579975389999994599879999999167---4064789999999999952--99599995 Q ss_pred EEEEE Q ss_conf 97101 Q gi|254780791|r 106 ESLIP 110 (529) Q Consensus 106 ~~i~~ 110 (529) ..... T Consensus 88 ~~~t~ 92 (97) T 3e0e_A 88 DNIGI 92 (97) T ss_dssp EEEEE T ss_pred CCCEE T ss_conf 99439 No 30 >>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} (A:1-145) Probab=93.89 E-value=0.65 Score=27.74 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=43.5 Q ss_pred CEEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEE Q ss_conf 62799987489-4799999735210586681459889999-99667528843799999 Q gi|254780791|r 51 GHAYFSLKDNH-SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIE 106 (529) Q Consensus 51 GH~Yf~lkd~~-a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~ 106 (529) ..+-|+|.|+. ..|++++|...+..++-..+.|+-|.+. ++++.| +|.+++.+. T Consensus 38 ~~~~l~i~D~t~~~i~v~lw~~~~~~l~~~~~~Gdvi~l~~~~v~~~--~g~~~~~~~ 93 (145) T 1xjv_A 38 YCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVY--KKETQGITS 93 (145) T ss_dssp EEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEE--TTEEEEEEE T ss_pred EEEEEEEECCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE--CCCEEEEEC T ss_conf 99999998189998189997888666998677798999977899997--893467725 No 31 >>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A (A:) Probab=93.79 E-value=0.45 Score=29.15 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=53.3 Q ss_pred CEEEEEEECC---CCCCCCCCEEE--EEE------ECC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC Q ss_conf 1899999705---43568886279--998------748------947999997352105866814598899999966752 Q gi|254780791|r 34 HVCVRGEISG---YRGIHSSGHAY--FSL------KDN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFP 96 (529) Q Consensus 34 ~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~ 96 (529) .|-+.|-|.. ++. -.+|..| |+| +|. ..-++|++|...+..+.. ++-|+.|+|.|++.... T Consensus 3 ~v~l~G~i~~dp~~~~-t~~G~~~~~f~la~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~-l~kG~~V~V~G~l~~~~ 80 (115) T 3fhw_A 3 TLELSARVLECGAXRH-TPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLAD-TPLGTEXQVQGFLAPAR 80 (115) T ss_dssp EEEEEEEEEEECCCEE-CTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEEEEEESS T ss_pred EEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCEEECCCCCCCEEEEEEEEEEHHHHHHHHH-CCCCCEEEEEEEECCCC T ss_conf 8999999876863889-899977899999932012048873534499999999488232041-37999999999965266 Q ss_pred C-CCEEEEEEEEEEEC Q ss_conf 8-84379999971016 Q gi|254780791|r 97 G-SSKYQIIIESLIPS 111 (529) Q Consensus 97 ~-~g~~ql~v~~i~~~ 111 (529) - ....++.++.|+.- T Consensus 81 ~~~~~g~i~~~~i~~l 96 (115) T 3fhw_A 81 KDSVKVKLHLQQARRI 96 (115) T ss_dssp TTCSSEEEEEEEEEEC T ss_pred CCCCCEEEEEEEEEEE T ss_conf 8898369998999992 No 32 >>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), homoserine O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima} (A:) Probab=93.78 E-value=0.5 Score=28.76 Aligned_cols=117 Identities=13% Similarity=0.038 Sum_probs=72.9 Q ss_pred HHHHHHHHCCCCCCCC--CCCCCCCEEEEEEC--CCHHHHHHHHHHHHHCCC-EEEEEEE--CCCCCCCHHHHHHHHHHH Q ss_conf 9976540122610016--31026528999847--842589999998630597-5899972--100111103679999999 Q gi|254780791|r 124 KKKLLEEGLFSDQHKN--PIPFIPKIIAVITS--PTGAVIRDILQRISCRFP-LRVIIFP--VKVQGDECPKEIANAILQ 196 (529) Q Consensus 124 k~~L~~eGlfd~~~k~--~lP~~p~~i~vits--~~~a~~~D~~~~~~~r~p-~~~~~~p--~~vQG~~a~~~i~~ai~~ 196 (529) ++.|..|+.+-..... .-+.-+.+|+||-. ...+-..++++.+..+.. +.+..+. ..+........+. . T Consensus 24 ~~~l~~e~~~~~~~~~~~~~~~~~~~i~ild~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 99 (312) T 2h2w_A 24 VKVLAKEGIFVMTEKRAIHQDIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHIL----K 99 (312) T ss_dssp HHHHHTTTCCCBCCC------CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHH----H T ss_pred HHHHHHCCCEEECHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHH----H T ss_conf 788986897775753512366643257887068851788999999866886554799998135235763388999----9 Q ss_pred HHHHCCCCCCCCCCEEEEECCCCCHHH----HHHCCHHHHHHHHHHCCCEEE Q ss_conf 974100357677758999516888444----220076999999974890488 Q gi|254780791|r 197 LNTLKEGRTCPRPDIIILARGGGSIED----LWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 197 ~~~~~~~~~~~~~D~iii~RGGGS~eD----L~~FN~e~laraI~~~~iPVi 244 (529) .....+......+|.|||.=|+|+..| .|.-..-.+.+...+-.+||+ T Consensus 100 ~~~~~~~~~~~~~Dgiii~GG~~~~~~~~~~~~~~~~~~li~~~~~~~~Pil 151 (312) T 2h2w_A 100 FYTTFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTM 151 (312) T ss_dssp HCBCGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEE T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 7571998733654479983898676424330009999999999997199827 No 33 >>1x3e_A Single-strand binding protein; oligonucleotide binding fold, DNA-binding protein, DNA binding protein; 2.15A {Mycobacterium smegmatis} PDB: 1x3f_A 1x3g_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A (A:) Probab=93.73 E-value=0.35 Score=30.18 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=57.4 Q ss_pred CCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC---------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE Q ss_conf 171899999705---43568886279--9987------48---------9479999973521058668145988999999 Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN---------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529) Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~---------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529) +..|.+.|-|.. ++ +..+|..| |+|- |. ..-+.|++|...+..+.-.++.|+.|+|.|+ T Consensus 4 mN~v~l~G~l~~dp~~r-~~~~G~~~~~~~ia~~~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~ 82 (165) T 1x3e_A 4 DTTITVVGNLTADPELR-FTPSGAAVANFTVASTPRMFDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGSRVIVTGR 82 (165) T ss_dssp CCEEEEEEEESSCCEEE-ECTTSCEEEEEEEECCCBC------CCCBCCCCEEEEEEETHHHHHHHHHCCTTCEEEEEEE T ss_pred CCEEEEEEECCCCCEEE-ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCEEEEEEE T ss_conf 57899999837798799-87999889999999723444445555335421788766363799999997347978999877 Q ss_pred EEE--ECC-----CCEEEEEEEEEEEC Q ss_conf 667--528-----84379999971016 Q gi|254780791|r 92 ITT--FPG-----SSKYQIIIESLIPS 111 (529) Q Consensus 92 ~~~--y~~-----~g~~ql~v~~i~~~ 111 (529) +.. |.. +..+.+.+++|... T Consensus 83 l~~~~~~~~dG~~~~~~~i~a~~i~~~ 109 (165) T 1x3e_A 83 LKQRSFETREGEKRTVVEVEVDEIGPS 109 (165) T ss_dssp EEEEEEECCC--EEEEEEEEEEEEEEC T ss_pred EEECCCCCCCCCEEEEEEEEEEEECCC T ss_conf 560652779998899899996653244 No 34 >>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} (A:1-162) Probab=93.73 E-value=0.29 Score=30.80 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=54.8 Q ss_pred CCEEEEEECCCHH-HH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 5289998478425-89-999998630597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 145 PKIIAVITSPTGA-VI-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 145 p~~i~vits~~~a-~~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) .+|+.|||.++.+ .+ ..+...+.++. +.+. .-++++.....+.++++.+... ++| .||+.||||.- T Consensus 34 ~~~~livtd~~~~~~~~~~~~~~L~~~~-i~~~---~~~~~~~~~~~v~~~~~~~~~~-------~~d-~iiaiGGGs~~ 101 (162) T 3ce9_A 34 FKRVSLYFGEGIYELFGETIEKSIKSSN-IEIE---AVETVKNIDFDEIGTNAFKIPA-------EVD-ALIGIGGGKAI 101 (162) T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTT-CEEE---EEEEECCCBHHHHHHHHTTSCT-------TCC-EEEEEESHHHH T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCC-CEEE---EEECCCCCCHHHHHHHHHHHHC-------CCC-EEEEECCCCCC T ss_conf 7959999896788999999999998779-9899---9857999988999999998643-------688-89970577555 Q ss_pred HHHHCCHHHHHHHHHH-CC-----CEEEEEECCCC Q ss_conf 4220076999999974-89-----04885205777 Q gi|254780791|r 223 DLWHFNDEMIVRAIAN-SS-----IPIISAIGHET 251 (529) Q Consensus 223 DL~~FN~e~laraI~~-~~-----iPVisgIGHE~ 251 (529) |. |++++. .. ||..+|.|=|. T Consensus 102 D~--------aK~~a~~~~~~~i~vPTt~~tgse~ 128 (162) T 3ce9_A 102 DA--------VKYXAFLRKLPFISVPTSTSNDGFS 128 (162) T ss_dssp HH--------HHHHHHHHTCCEEEEESCCSSGGGT T ss_pred CC--------CCCCCCCCCCCEEEEECCCCCCCCC T ss_conf 53--------1001345667539995145554124 No 35 >>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} (A:) Probab=93.69 E-value=0.37 Score=29.95 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=59.8 Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 0171899999705---43568886279--998------7489-------4799999735210586681459889999996 Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKI 92 (529) Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~ 92 (529) .+..|-+.|-|.. ++. ..+|..| |+| +|.. .-++|++|...+..+.-.++.|+.|+|.|++ T Consensus 15 ~mn~v~l~G~l~~dpei~~-~~~g~~~~~~~la~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~l 93 (153) T 1z9f_A 15 FFNKIILIGRLVRDPEERY-TLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEM 93 (153) T ss_dssp CCCCEEEEEEESSCCEEEE-CC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE T ss_pred HCCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHCCCCCEEEEEEEE T ss_conf 4788999999377988998-899988999988770420146774210101244453000000111201588489999966 Q ss_pred EE--EC-----CCCEEEEEEEEEEECC Q ss_conf 67--52-----8843799999710168 Q gi|254780791|r 93 TT--FP-----GSSKYQIIIESLIPSG 112 (529) Q Consensus 93 ~~--y~-----~~g~~ql~v~~i~~~g 112 (529) .. |. .+..+.+.+++|.... T Consensus 94 ~~~~~~~~~G~~~~~~~i~a~~i~~l~ 120 (153) T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMD 120 (153) T ss_dssp EEEC-------CCCEEEEEEEEEEECC T ss_pred EEEEEECCCCCEEEEEEEEEEEEEECC T ss_conf 643789999989999999994899876 No 36 >>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} (A:1-185) Probab=93.57 E-value=0.57 Score=28.24 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=49.0 Q ss_pred CCCEEEEEECCCHHH-----HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 652899984784258-----999999863059758999721001111036799999999741003576777589995168 Q gi|254780791|r 144 IPKIIAVITSPTGAV-----IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 144 ~p~~i~vits~~~a~-----~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) -.+|+.|||.++... +.+++..+..+. ..+.+| .-+.++.....+.++++.+.... +| .||+=|| T Consensus 32 ~~~~vlivt~~~~~~~~~~~~~~v~~~L~~~~-i~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-------~D-~iIaiGG 101 (185) T 3bfj_A 32 GGKKALLVTDKGLRAIKDGAVDKTLHYLREAG-IEVAIF-DGVEPNPKDTNVRDGLAVFRREQ-------CD-IIVTVGG 101 (185) T ss_dssp TCSEEEEECCTTTC--CCSSHHHHHHHHHHTT-CEEEEE-CCCCSSCBHHHHHHHHHHHHHTT-------CC-EEEEEES T ss_pred CCCEEEEEECCCHHHHCCCHHHHHHHHHHHCC-CEEEEE-ECCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEECC T ss_conf 99869999898667601569999999999769-939998-08579989999999999876229-------98-8999278 Q ss_pred CCHHHH Q ss_conf 884442 Q gi|254780791|r 219 GSIEDL 224 (529) Q Consensus 219 GS~eDL 224 (529) ||.-|. T Consensus 102 Gs~~D~ 107 (185) T 3bfj_A 102 GSPHDC 107 (185) T ss_dssp HHHHHH T ss_pred CCCCCH T ss_conf 740108 No 37 >>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} (A:1-193) Probab=92.43 E-value=0.35 Score=30.12 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=50.8 Q ss_pred CCCEEEEEECCCHHHH----HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 6528999847842589----999998630597589997210011110367999999997410035767775899951688 Q gi|254780791|r 144 IPKIIAVITSPTGAVI----RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 144 ~p~~i~vits~~~a~~----~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) -++++.|||+...... ..+...+.+.. ..+.+| .-+-|+-...++.++++.+.... +| .||+=||| T Consensus 42 g~~~vlivtd~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-------~D-~IIaiGGG 111 (193) T 1vlj_A 42 GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHG-IEWVEV-SGVKPNPVLSKVHEAVEVAKKEK-------VE-AVLGVGGG 111 (193) T ss_dssp TCCEEEEEECSSHHHHSSHHHHHHHHHHHTT-CEEEEE-CCCCSSCBHHHHHHHHHHHHHTT-------CS-EEEEEESH T ss_pred CCCEEEEEECCCHHHHCCHHHHHHHHHHHCC-CEEEEE-CCCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCC T ss_conf 9985899988757887629999999998659-919998-67169999999999999861358-------87-57523886 Q ss_pred CHHHHHHCCHHHHHHHHHH Q ss_conf 8444220076999999974 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIAN 238 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~ 238 (529) |.-|. |++++. T Consensus 112 s~~D~--------aK~~a~ 122 (193) T 1vlj_A 112 SVVDS--------AKAVAA 122 (193) T ss_dssp HHHHH--------HHHHHH T ss_pred CHHHH--------HHHHHH T ss_conf 31146--------788899 No 38 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235) Probab=92.36 E-value=1 Score=25.98 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=60.1 Q ss_pred CCCEEEEEECCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 652899984784---25899999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 144 IPKIIAVITSPT---GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 144 ~p~~i~vits~~---~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -.++|||+-+++ +...-+.++....++++++..+++. .+.+|-.+++.+-. .+|+|++. T Consensus 15 ~~k~vgvly~~~e~~s~~~~~~l~~~a~~~Gi~l~~~~v~-----~~~di~~~~~~~~~--------~~dai~~~----- 76 (118) T 3lft_A 15 NVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP-----STNEIASTVTVXTS--------KVDAIWVP----- 76 (118) T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES-----SGGGHHHHHHHHTT--------TCSEEEEC----- T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-----CHHHHHHHHHHCCC--------CCEEEEEC----- T ss_conf 8864689669753129999999998666417568750466-----67999999983678--------86199973----- Q ss_pred HHHHHHC-CHHHHHHHHHHCCCEEEEEE Q ss_conf 4442200-76999999974890488520 Q gi|254780791|r 221 IEDLWHF-NDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 221 ~eDL~~F-N~e~laraI~~~~iPVisgI 247 (529) .|-..+ +-+.++......+||||++- T Consensus 77 -~d~~v~s~~~~i~~~a~~~~iPv~~~~ 103 (118) T 3lft_A 77 -IDNTIASGFPTVVSSNQSSKKPIYPSA 103 (118) T ss_dssp -SCHHHHHTHHHHHHHTTTTCCCEEESS T ss_pred -CCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf -870688899999985202478678631 No 39 >>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} (A:) Probab=92.12 E-value=1.1 Score=25.75 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=58.4 Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC-------CCEEEEEEECCCCCCCC-CCCCCCCEEEEEEE Q ss_conf 0171899999705---43568886279--9987------48-------94799999735210586-68145988999999 Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN-------HSRIDAIIWKGTLNKIE-FLPEEGIEFLVIGK 91 (529) Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~-------~a~i~~~~~~~~~~~~~-~~~~~G~~v~~~g~ 91 (529) ++..|.|.|=|.. ++. ..+|..| |+|- +. ..-++|++|...+..+- -.++.|+.|+|.|+ T Consensus 4 ~~N~v~l~G~l~~dpe~~~-~~~g~~~~~f~la~~~~~~~~~~~~~~~t~~~~v~~~~~~a~~~~~~~l~kG~~v~V~G~ 82 (301) T 1se8_A 4 GXNHVYLIGALARDPELRY-TGNGXAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGT 82 (301) T ss_dssp CEEEEEEEEEESSCCEEEE-CTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEE T ss_pred CCEEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCEEECCEEEEEEEECHHHHHHHHHHCCCCCEEEEEEE T ss_conf 5149999999366988998-899988999999978955879998973347999999887999999872566878999999 Q ss_pred EEE--EC-----CCCEEEEEEEEEEECCC Q ss_conf 667--52-----88437999997101680 Q gi|254780791|r 92 ITT--FP-----GSSKYQIIIESLIPSGS 113 (529) Q Consensus 92 ~~~--y~-----~~g~~ql~v~~i~~~g~ 113 (529) +.. |. .+..+.++++.|.+.+- T Consensus 83 l~~~~~~~~dG~~~~~~~i~a~~i~~~~~ 111 (301) T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRXEQLGT 111 (301) T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECSS T ss_pred EEEEEEECCCCCEEEEEEEEEEEEEECCC T ss_conf 78512398999889999999989998158 No 40 >>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} (A:1-163) Probab=91.98 E-value=0.71 Score=27.38 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=58.9 Q ss_pred CCCCCCCEEEEEECCCH-HHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 31026528999847842-58999-99986305975899972100111103679999999974100357677758999516 Q gi|254780791|r 140 PIPFIPKIIAVITSPTG-AVIRD-ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 140 ~lP~~p~~i~vits~~~-a~~~D-~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) -+..+-+|+.|||.++. ..+.| +...+.+.. +.+ .-..+.++.....+-+++..+...+ +| .||+=| T Consensus 26 ~l~~~g~r~livtd~~~~~~~~~~v~~~l~~~~-~~~--~~~~~~~~~t~~~v~~~~~~~~~~~-------~d-~iiaiG 94 (163) T 1jq5_A 26 YLEGIGNKTVVIADEIVWKIAGHTIVNELKKGN-IAA--EEVVFSGEASRNEVERIANIARKAE-------AA-IVIGVG 94 (163) T ss_dssp HHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTT-CEE--EEEECCSSCBHHHHHHHHHHHHHTT-------CS-EEEEEE T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCC-CEE--EEEEECCCCCHHHHHHHHHHHHHCC-------CC-EEEEEC T ss_conf 999769938999897578999999999998779-969--9998499999999999999987429-------98-899846 Q ss_pred CCCHHHHHHCCHHHHHHHHHHC-CC-----EEEEEECCCC Q ss_conf 8884442200769999999748-90-----4885205777 Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAIANS-SI-----PIISAIGHET 251 (529) Q Consensus 218 GGS~eDL~~FN~e~laraI~~~-~i-----PVisgIGHE~ 251 (529) |||.-|+ |++++.+ .+ |...|.|=|. T Consensus 95 GGs~~D~--------aK~~~~~~~~p~i~iPTt~~t~ae~ 126 (163) T 1jq5_A 95 GGKTLDT--------AKAVADELDAYIVIVPTAASTDAPT 126 (163) T ss_dssp SHHHHHH--------HHHHHHHHTCEEEEEESSCCSSCTT T ss_pred CCCCCCC--------HHHHHHCCCCCEEEEECCCCCCCCC T ss_conf 8601002--------0110020479789970655566556 No 41 >>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134} (A:1-161) Probab=91.72 E-value=0.9 Score=26.45 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=51.8 Q ss_pred CCCEEEEEECCCHHHHHH-HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 652899984784258999-9998630597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRD-ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D-~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) -.+++.|||.+..+++.| +...+.++ .+.+| ..+.++-...++.++.+.+...+ +| .||+=||||.- T Consensus 35 ~~~~~liv~~~~~~~~~~~~~~~l~~~---~i~~~-~~~~~~~~~~~v~~~~~~~~~~~-------~d-~IiaiGGGs~~ 102 (161) T 3jzd_A 35 GAKRALVLCTPNQQAEAERIADLLGPL---SAGVY-AGAVXHVPIESARDATARAREAG-------AD-CAVAVGGGSTT 102 (161) T ss_dssp TCSCEEEECCGGGHHHHHHHHHHHGGG---EEEEE-CCCCTTCBHHHHHHHHHHHHHHT-------CS-EEEEEESHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCC---CCEEE-ECCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCCCCC T ss_conf 998699998176550499999986137---71899-45213989899999998753148-------97-89842785544 Q ss_pred HHHHCCHHHHHHHHHH-CCCEEEE Q ss_conf 4220076999999974-8904885 Q gi|254780791|r 223 DLWHFNDEMIVRAIAN-SSIPIIS 245 (529) Q Consensus 223 DL~~FN~e~laraI~~-~~iPVis 245 (529) |. |++++. ..+|+|+ T Consensus 103 D~--------aK~~a~~~~~p~i~ 118 (161) T 3jzd_A 103 GL--------GKAIALETGXPIVA 118 (161) T ss_dssp HH--------HHHHHHHHCCCEEE T ss_pred CH--------HHHHHHCCCCEEEE T ss_conf 34--------43101121220576 No 42 >>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* (A:1-165) Probab=91.15 E-value=0.91 Score=26.43 Aligned_cols=91 Identities=15% Similarity=0.162 Sum_probs=55.0 Q ss_pred CCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 6528999847842-589999998630597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 144 IPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 144 ~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) -.+++.|||.+.. .++.|-+...-++..+++.+|.. +.++-....+-++++.+.... ..++| .||+=||||.- T Consensus 30 ~~~~~livtd~~~~~~~~~~i~~~L~~~~~~~~~~~~-~~~~p~~~~v~~~~~~~~~~~----~~~~d-~iiaiGGGs~~ 103 (165) T 1xah_A 30 QFDQSFLLIDEYVNQYFANKFDDILSYENVHKVIIPA-GEKTKTFEQYQETLEYILSHH----VTRNT-AIIAVGGGATG 103 (165) T ss_dssp TCSCEEEEEEHHHHHHHHHHHC------CEEEEEECS-GGGGCSHHHHHHHHHHHHTTC----CCTTC-EEEEEESHHHH T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHH----HHCCC-CEEEECCHHHH T ss_conf 3597999999857899999999999777957999728-876677878999888888765----41234-21452427888 Q ss_pred HHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 42200769999999748904885 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVis 245 (529) |++.| +...+..++|+|+ T Consensus 104 D~ak~-----~a~~~~~~~p~i~ 121 (165) T 1xah_A 104 DFAGF-----VAATLLRGVHFIQ 121 (165) T ss_dssp HHHHH-----HHHHBTTCCEEEE T ss_pred HHHHH-----HHHHHCCCCCEEE T ss_conf 78766-----0253237862477 No 43 >>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} (A:) Probab=90.79 E-value=0.71 Score=27.40 Aligned_cols=88 Identities=8% Similarity=-0.003 Sum_probs=65.1 Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 63102652899984784258999999863059758999721001111036799999999741003576777589995168 Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) -+-|..+.+|+||--..+..++.+.+.+..+- +++.+++...-.. .+ .....+|.|||.=|+ T Consensus 6 ~~~~~~~~~i~vid~~~~~~~~~~~~~l~~~g-~~~~v~~~~~~~~-~~----------------~~~~~~Dgiii~Gg~ 67 (239) T 1o1y_A 6 IHHHHHHVRVLAIRHVEIEDLGXXEDIFREKN-WSFDYLDTPKGEK-LE----------------RPLEEYSLVVLLGGY 67 (239) T ss_dssp ----CCCCEEEEECSSTTSSCTHHHHHHHHTT-CEEEEECGGGTCC-CS----------------SCGGGCSEEEECCCS T ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCC-CEEEEEECCCCCC-CC----------------CCHHHCCEEEECCCC T ss_conf 44345640799997999889769999999788-9799998989877-87----------------674447989988999 Q ss_pred CCHHH----HHHCCHHHHHHHHHHCCCEEE Q ss_conf 88444----220076999999974890488 Q gi|254780791|r 219 GSIED----LWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 219 GS~eD----L~~FN~e~laraI~~~~iPVi 244 (529) +|..| -|......+++..++..+||+ T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 97 (239) T 1o1y_A 68 XGAYEEEKYPFLKYEFQLIEEILKKEIPFL 97 (239) T ss_dssp CCTTCTTTCTHHHHHHHHHHHHHHHTCCEE T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 987777678322999999999997699999 No 44 >>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} (A:) Probab=90.69 E-value=0.49 Score=28.81 Aligned_cols=77 Identities=6% Similarity=0.119 Sum_probs=54.0 Q ss_pred CCCEEEEEEECC---CCCCCCCCE--EEEEEEC--------CCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE--C Q ss_conf 171899999705---435688862--7999874--------894799999735210586681459889999996675--2 Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGH--AYFSLKD--------NHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF--P 96 (529) Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH--~Yf~lkd--------~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y--~ 96 (529) +..|-+.|-|.+ ++. ..+|. +.|.+.. ...-++|++|...+..+.-.++-|+.|+|.|++..+ . T Consensus 11 ~N~v~l~G~l~~dp~~~~-t~~g~~~~~~~~~~~~~~~~~~~~~~i~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~~~~~ 89 (108) T 3koj_A 11 XNSCILQATVVEAPQLRY-AQDNQTPVAEXVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108) T ss_dssp CEEEEEEEEEEEEEEEEE-CTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC-- T ss_pred CCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEECEEEE T ss_conf 899999999877976888-2899879999999968984578976999999789999999860899999999998780789 Q ss_pred -----CCCEEEEEEEEEE Q ss_conf -----8843799999710 Q gi|254780791|r 97 -----GSSKYQIIIESLI 109 (529) Q Consensus 97 -----~~g~~ql~v~~i~ 109 (529) .+..++++++.|. T Consensus 90 ~~dG~~~~~~~i~a~~i~ 107 (108) T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108) T ss_dssp ------CCEEEEEEEEEE T ss_pred CCCCCEEEEEEEEEEECC T ss_conf 999989999999999716 No 45 >>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} (A:1-159) Probab=90.66 E-value=1.4 Score=24.83 Aligned_cols=83 Identities=18% Similarity=0.174 Sum_probs=51.6 Q ss_pred CCCCEEEEEECCCHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 26528999847842589999-99863059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDI-LQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~-~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) ...+++-|||.++.+.+-|- ...+.+. .+.+|+. +-++-....+-++++.+... ++| .||+=||||. T Consensus 32 ~g~~~~livtd~~~~~~~~~v~~~l~~~---~~~~~~~-~~~~~~~~~v~~~~~~~~~~-------~~d-~iiaiGGGsv 99 (159) T 3hl0_A 32 LGLSRALVLSTPQQKGDAEALASRLGRL---AAGVFSE-AAXHTPVEVTKTAVEAYRAA-------GAD-CVVSLGGGST 99 (159) T ss_dssp TTCCCEEEECCGGGHHHHHHHHHHHGGG---EEEEECC-CCTTCBHHHHHHHHHHHHHT-------TCS-EEEEEESHHH T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCC---CCEEEEC-CCCCCCHHHHHHHHHHHHHC-------CCC-EEEEECCCCC T ss_conf 3998699997842214799999986068---8289962-61699989999999999963-------998-8999589751 Q ss_pred HHHHHCCHHHHHHHHHH-CCCEEEE Q ss_conf 44220076999999974-8904885 Q gi|254780791|r 222 EDLWHFNDEMIVRAIAN-SSIPIIS 245 (529) Q Consensus 222 eDL~~FN~e~laraI~~-~~iPVis 245 (529) -|+ |++++. ..+|+|+ T Consensus 100 iD~--------AK~~a~~~~~p~i~ 116 (159) T 3hl0_A 100 TGL--------GKAIALRTDAAQIV 116 (159) T ss_dssp HHH--------HHHHHHHHCCEEEE T ss_pred HHH--------HHHHHHCCCCCEEE T ss_conf 101--------12322036786577 No 46 >>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} (A:1-199) Probab=90.46 E-value=0.61 Score=27.96 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=51.9 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------CCCHHHHHHCCH---------HHHHHHHHHCCCEEEE Q ss_conf 111103679999999974100357677758999516-------888444220076---------9999999748904885 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG-------GGSIEDLWHFND---------EMIVRAIANSSIPIIS 245 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG-------GGS~eDL~~FN~---------e~laraI~~~~iPVis 245 (529) -......+|.++++.++...+ +- +||.+| ||.+++.....+ ..+.++|..||.|||+ T Consensus 27 ~~~~~~~~l~~~l~~~~~d~~------~~-vvvl~g~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 99 (199) T 2ej5_A 27 FTEQMNAEVTKALKQAGADPN------VR-CVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVA 99 (199) T ss_dssp BCHHHHHHHHHHHHHHHHCTT------CC-EEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEE T ss_pred CCHHHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 899999999999999974999------33-99973343220010228886420001256664112677888852984899 Q ss_pred EE-CCCCCCH-HHHHHHCCCCCCCHH Q ss_conf 20-5777525-898864123777214 Q gi|254780791|r 246 AI-GHETDWT-LADYAADLRAPTPTG 269 (529) Q Consensus 246 gI-GHE~D~T-l~D~VAD~Ra~TPTa 269 (529) +| ||=.--- -.=+.+|.|..+|.+ T Consensus 100 ~i~G~a~GgG~~lal~~D~~ia~~~~ 125 (199) T 2ej5_A 100 AVNGAAAGAGMSLALACDFRLLSEKA 125 (199) T ss_dssp EECSEEETHHHHHHHHSSEEEEETTC T ss_pred EECCEEEHHHHHHHHHCCCCCCCCCC T ss_conf 97977772658999830511005451 No 47 >>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Bordetella parapertussis} (A:) Probab=89.62 E-value=0.88 Score=26.55 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=48.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----------------HHHHHCCHHHHHHHHHHCCCEEEEEE- Q ss_conf 036799999999741003576777589995168884-----------------44220076999999974890488520- Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----------------EDLWHFNDEMIVRAIANSSIPIISAI- 247 (529) Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----------------eDL~~FN~e~laraI~~~~iPVisgI- 247 (529) -..++.++++.++.. ...+||++|+|.. ..-+..+...+...+..||.|||.+| T Consensus 35 ~~~~l~~~l~~~~~d--------~~~vvvi~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~ 106 (254) T 3isa_A 35 LVEALIDGVDAAHRE--------QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAH 106 (254) T ss_dssp HHHHHHHHHHHHHHT--------TCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC T ss_pred HHHHHHHHHHHHHCC--------CCEEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCC T ss_conf 999999999987579--------956999955643334432135443100000112456778888874048720001212 Q ss_pred CCCC-CCHHHHHHHCCCCCCCHH Q ss_conf 5777-525898864123777214 Q gi|254780791|r 248 GHET-DWTLADYAADLRAPTPTG 269 (529) Q Consensus 248 GHE~-D~Tl~D~VAD~Ra~TPTa 269 (529) ||=. -=.-.=+.+|.|..|+.+ T Consensus 107 G~a~GgG~~lal~cD~ria~~~a 129 (254) T 3isa_A 107 GRNFGAGVDLFAACKWRYCTPEA 129 (254) T ss_dssp SEEETHHHHHHHHSSEEEECTTC T ss_pred CCCCCCCCCCCCCCCEEEECCCC T ss_conf 23555454445421246632355 No 48 >>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori} (A:1-160) Probab=89.60 E-value=0.043 Score=38.22 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=55.6 Q ss_pred CCCCCEEEEEECCCH-HH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 026528999847842-58-9999998630597589997210011110367999999997410035767775899951688 Q gi|254780791|r 142 PFIPKIIAVITSPTG-AV-IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 142 P~~p~~i~vits~~~-a~-~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) ...++|+.|||++.. .. ...+...+.+ ..+++.+|+... .+-....+.++++.+..... .++| .||+=||| T Consensus 23 ~~~~~~~livt~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~----~~~d-~iiaiGGG 95 (160) T 3clh_A 23 IKLKQKALIISDSIVAGLHLPYLLERLKA-LEVRVCVIESGE-KYKNFHSLERILNNAFEMQL----NRHS-LMIALGGG 95 (160) T ss_dssp EECSSCEEEEEEHHHHTTTHHHHHTTEEC-SCEEEEEECSSG-GGCSHHHHHHHHHHHHHTTC----CTTC-EEEEEESH T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHH-CCCEEEEECCCC-CCCCHHHHHHHHHHHHHHCC----CCCC-CEEEECCH T ss_conf 05789799998983568899999998630-794799977985-54998999999999975024----6654-13554235 Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 844422007699999997489048852057775 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETD 252 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D 252 (529) |.-|+.-|......+.+----||...|-|+|.. T Consensus 96 s~~D~aK~~a~~~~~~~p~i~VPTt~~t~~e~s 128 (160) T 3clh_A 96 VISDMVGFASSIYFRGIDFINIPTTLLAQVDAS 128 (160) T ss_dssp HHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTS T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCHHHCCCCC T ss_conf 888999999988706863120255065323343 No 49 >>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} (A:) Probab=89.44 E-value=1.8 Score=23.85 Aligned_cols=80 Identities=14% Similarity=0.244 Sum_probs=55.8 Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC--------CEEEEEEECCCCCCCCCCCCCCCEEEEEEE Q ss_conf 0171899999705---43568886279--998------7489--------479999973521058668145988999999 Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH--------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529) Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~--------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529) .+..|-|.|-|.+ ++ ...+|..| |+| ||.. .-++|.+|...+..+.-.++.|+.|+|.|+ T Consensus 4 ~mN~v~i~G~l~~dp~~~-~~~~g~~~~~f~la~~~~~k~~~~~~~~~~t~~~~v~~~~~~Ae~~~~~l~KG~~V~V~G~ 82 (145) T 1qvc_A 4 GVNKVILVGNLGQDPEVR-YMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145) T ss_dssp CEEEEEEEEEESSCCEEE-CCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE T ss_pred CCEEEEEEEECCCCCEEE-ECCCCCEEEEEEEEECCCEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCEEEEEEE T ss_conf 513999999888898898-8899988999999833210025677302111167788975156766555123778999978 Q ss_pred EEE--EC-CCC----EEEEEEEEEEEC Q ss_conf 667--52-884----379999971016 Q gi|254780791|r 92 ITT--FP-GSS----KYQIIIESLIPS 111 (529) Q Consensus 92 ~~~--y~-~~g----~~ql~v~~i~~~ 111 (529) +.. |. +.| .+.|.+++|.+. T Consensus 83 l~~~~~~~kdG~~~~~~~i~a~~i~~l 109 (145) T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTM 109 (145) T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEE T ss_pred EEEEEEECCCCCEEEEEEEEEECCCCE T ss_conf 886561989999899999999247877 No 50 >>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:61-168,A:301-332) Probab=89.43 E-value=1.2 Score=25.24 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=78.3 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -..||||.+. +..-+.+|++-+.. ..++.++++++.-+- .....+++.+... ++|.||+.-.. T Consensus 8 S~~Igviv~~~~n~f~~~il~gie~~a~~~Gy~vii~~~~~~~----~~~~~~i~~l~~~-------~vDGiIi~~~~-- 74 (140) T 3kjx_A 8 VNLVAVIIPSLSNXVFPEVLTGINQVLEDTELQPVVGVTDYLP----EKEEKVLYEXLSW-------RPSGVIIAGLE-- 74 (140) T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCH----HHHHHHHHHHHTT-------CCSEEEEECSC-- T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC----HHHHHHHHHHHHC-------CCCEEEEEECC-- T ss_conf 6067762354445320233313334221000011101123542----1258999999953-------88514543102-- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHC Q ss_conf 4442200769999999748904885205777525898864123777214567633 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAV 275 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElav 275 (529) .+...+..+....||||.-=.+-.+..+.=-..|+|...--.|||++. T Consensus 75 -------~~~~~v~~l~~~~IPvV~id~~~~~~~~~~V~~D~~~~~~~~~~~~~~ 122 (140) T 3kjx_A 75 -------HSEAARAXLDAAGIPVVEIXDSDGKPVDAXVGISCRLEIGRKAAEIIA 122 (140) T ss_dssp -------CCHHHHHHHHHCSSCEEEEEECSSCCSSEEEEECCHHHHHHHHHHHHH T ss_pred -------CCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH T ss_conf -------310134443116886278840246888877753199999999999999 No 51 >>2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} (A:) Probab=89.34 E-value=1 Score=26.06 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=44.1 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHH---H---HCCH-----------HHHHHHHHHCCCE Q ss_conf 11036799999999741003576777589995168884----442---2---0076-----------9999999748904 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDL---W---HFND-----------EMIVRAIANSSIP 242 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL---~---~FN~-----------e~laraI~~~~iP 242 (529) -....+|..++..++.. .+++||++|+|.. -|+ . ..++ ..+..+|..||.| T Consensus 50 ~~~~~~l~~al~~~~~d--------~~~~vVi~g~g~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkp 121 (291) T 2fbm_A 50 TEVIKEIVNALNSAAAD--------DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKP 121 (291) T ss_dssp HHHHHHHHHHHHHHHHS--------SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEEEECCCCEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999999998709--------9779999078630212544101000122333211245544334455441002101 Q ss_pred EEEEE-CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf 88520-57775-25898864123777214 Q gi|254780791|r 243 IISAI-GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 243 VisgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) ||++| ||=.= =...=+.+|+|..|+++ T Consensus 122 vIaav~G~a~GgG~~lal~~D~~ia~~~a 150 (291) T 2fbm_A 122 IVVSVNGPAIGLGASILPLCDLVWANEKA 150 (291) T ss_dssp EEEEECSCEETHHHHTGGGSSEEEEETTC T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 02000014644343310024314401110 No 52 >>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA hydration, sodium ION, quadruplex DNA, DNA-binding protein/DNA complex; 1.86A {Sterkiella nova} (A:1-180) Probab=89.13 E-value=1.8 Score=23.68 Aligned_cols=72 Identities=6% Similarity=0.054 Sum_probs=50.9 Q ss_pred CEEEEEEECCCCCC-CCCC---EEEEEEECCC-------------CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEE Q ss_conf 18999997054356-8886---2799987489-------------4799999735210586681459889999-996675 Q gi|254780791|r 34 HVCVRGEISGYRGI-HSSG---HAYFSLKDNH-------------SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTF 95 (529) Q Consensus 34 ~~~v~gEis~~~~~-~~sG---H~Yf~lkd~~-------------a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y 95 (529) .|-|.|-|..+... ++.| .+-|+|+|.. ..|+|.+|+.+...|+.-+..||=|+++ .++..| T Consensus 51 ~vnvigVV~d~~~P~~s~g~d~~~tl~I~D~S~~~~~~~~~~~~~~gl~v~iF~~~~~~LP~V~~~GDIIll~~v~v~~~ 130 (180) T 1jb7_A 51 PQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLY 130 (180) T ss_dssp CEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCEETCEEEEEEEEEEEE T ss_pred EEEEEEEEEECCCCEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE T ss_conf 06899999862386336997189999998067765554555678886089997489778998577899999998899998 Q ss_pred CCCCEEEEEEEE Q ss_conf 288437999997 Q gi|254780791|r 96 PGSSKYQIIIES 107 (529) Q Consensus 96 ~~~g~~ql~v~~ 107 (529) +|..+++... T Consensus 131 --~g~~~~v~~~ 140 (180) T 1jb7_A 131 --NGQRQFNANV 140 (180) T ss_dssp --TTEEEEEEET T ss_pred --CCEEEEEECC T ss_conf --8877898458 No 53 >>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* (A:1-104,A:238-280) Probab=89.03 E-value=1.9 Score=23.62 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=59.0 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 289998478425899999986305---97589997210011110367999999997410035767775899951688844 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) -+||||.+.+..-+.++++.+++. .++++.++. -+++...+-.++|+.+-.. ++|.||++=-+.. T Consensus 2 itIGII~~~sn~f~~~i~~gie~~a~~~G~~v~i~~---~~~~d~~~q~~~Le~li~~-------~vDGIIi~~~d~~-- 69 (147) T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV---PQKEDINAQLQMLESFIAE-------GVNGIAIAPSDPT-- 69 (147) T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC---CSSSCHHHHHHHHHHHHHT-------TCSEEEECCSSTT-- T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEE---CCCCCHHHHHHHHHHHHHC-------CCCEEEEECCCHH-- T ss_conf 699994899998999999999999998199799997---9999999999999999976-------9999999725034-- Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 422007699999997489048852057 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGH 249 (529) -.....+.+.+..||||.==.. T Consensus 70 -----~~~~~i~~l~~~gIPVV~vd~~ 91 (147) T 2h3h_A 70 -----AVIPTIKKALEMGIPVVTLDTD 91 (147) T ss_dssp -----TTHHHHHHHHHTTCCEEEESSC T ss_pred -----HHHHHHHHHHHCCCCEEEEECC T ss_conf -----4248999987435624999335 No 54 >>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} (A:) Probab=89.02 E-value=1.1 Score=25.56 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=48.1 Q ss_pred CCEEEEEEE------CCCCCCCCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCC-----C Q ss_conf 718999997------0543568886-27999874894799999735210586681459889999-996675288-----4 Q gi|254780791|r 33 SHVCVRGEI------SGYRGIHSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGS-----S 99 (529) Q Consensus 33 ~~~~v~gEi------s~~~~~~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~-----g 99 (529) .++.|+|-| .+|+.....| .+.+.|.|+.+.|+|++|...+....-.+++|+-+.+. +.|..+.++ + T Consensus 15 ~~~~I~~rV~~~~~~~~~~~~~~~~~~~~~~l~De~G~I~~~i~~~~~~~f~~~l~eG~vy~i~~~~V~~~~~~~~~~~~ 94 (114) T 1ynx_A 15 NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTH 94 (114) T ss_dssp CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSS T ss_pred CCEEEEEEEEEECCCEEEECCCCCCEEEEEEEECCCCCEEEEECHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCCCC T ss_conf 96899999977225614767999745999999948996999984146445666502698899934399977686202798 Q ss_pred EEEEEEE Q ss_conf 3799999 Q gi|254780791|r 100 KYQIIIE 106 (529) Q Consensus 100 ~~ql~v~ 106 (529) .|++... T Consensus 95 ~~~i~f~ 101 (114) T 1ynx_A 95 PYELNLD 101 (114) T ss_dssp CEEEEEC T ss_pred CEEEEEC T ss_conf 7899977 No 55 >>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} (A:) Probab=88.97 E-value=1.9 Score=23.59 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=53.4 Q ss_pred CCEEEEEEECC---CCCCCCCCEEE--EEE------ECC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE- Q ss_conf 71899999705---43568886279--998------748------9479999973521058668145988999999667- Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSGHAY--FSL------KDN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT- 94 (529) Q Consensus 33 ~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~- 94 (529) ..|-+.|-|.+ ++. ..+|..| |+| +|. ..-++|+.|...+....+ +-|+.|.|.|++.. T Consensus 8 n~v~l~G~i~~dp~~r~-t~~G~~~~~~~la~~~~~~~~~~~~~~t~~~~v~~~g~~Ae~~~l--~kG~~V~V~G~l~~~ 84 (103) T 3k8a_A 8 NLVSLAALIEKAFPIRY-TPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQY--RQGDCATVEGFLAQK 84 (103) T ss_dssp EEEEEEEEEEEECCCEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTT--CTTCEEEEEEEEEES T ss_pred CEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEHHHHHHHHH--CCCCEEEEEEEEEEC T ss_conf 47999999878874689-999976999999874544158870215799999999488566644--899999999993750 Q ss_pred -ECCCCEEEEEEEEEEEC Q ss_conf -52884379999971016 Q gi|254780791|r 95 -FPGSSKYQIIIESLIPS 111 (529) Q Consensus 95 -y~~~g~~ql~v~~i~~~ 111 (529) |.. ....+.+++|+.- T Consensus 85 ~~~~-~~~~v~~~~i~~l 101 (103) T 3k8a_A 85 SRRS-LMPMLRIQNIKEY 101 (103) T ss_dssp SSSC-CCEEEEEEEEEEC T ss_pred CCCC-CEEEEEEEEEEEC T ss_conf 4668-7489999899981 No 56 >>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} (A:) Probab=88.90 E-value=1.9 Score=23.55 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=17.5 Q ss_pred CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC Q ss_conf 7758999516888444220076999999974890488520577 Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE 250 (529) Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE 250 (529) +.|++++=|||-....-...|-..++..-..+.+|||.=..|- T Consensus 241 N~~~~l~~RG~~~~~n~~~~di~~~~~~~~~~~lpVivD~SH~ 283 (370) T 1of8_A 241 NEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHG 283 (370) T ss_dssp CSCEEEEECCCTTCCCCSHHHHHHHHHHCCTTCCCEEEESSGG T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 8761200364688777689999999998750598279854678 No 57 >>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} (A:1-181) Probab=88.71 E-value=2 Score=23.46 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=49.5 Q ss_pred CCCCEEEEEECCCHH--HHHHHHHHHHHC------CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE Q ss_conf 265289998478425--899999986305------97-589997210011110367999999997410035767775899 Q gi|254780791|r 143 FIPKIIAVITSPTGA--VIRDILQRISCR------FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII 213 (529) Q Consensus 143 ~~p~~i~vits~~~a--~~~D~~~~~~~r------~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii 213 (529) ..++|+.|||++..+ ....+...+... |+ ..+..++. +.-+-....+-+.++.+..... ...+. ..| T Consensus 34 ~~~~r~~ivtd~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~--~~~k~-~~i 109 (181) T 1sg6_A 34 CSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPP-GEVSKSRQTKADIEDWMLSQNP--PCGRD-TVV 109 (181) T ss_dssp SCCSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECS-SGGGSSHHHHHHHHHHHHTSSS--CCCTT-CEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHCCC--CCCCC-CEE T ss_conf 7998189998896579899999999987175224676248998379-9553999999999999985354--67887-669 Q ss_pred EECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 95168884442200769999999748904885 Q gi|254780791|r 214 LARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 214 i~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) |+=||||.-|..- .+...+..++|+|+ T Consensus 110 iaiGGG~v~D~ak-----~~a~~~~~~ip~i~ 136 (181) T 1sg6_A 110 IALGGGVIGDLTG-----FVASTYMRGVRYVQ 136 (181) T ss_dssp EEEESHHHHHHHH-----HHHHHGGGCCEEEE T ss_pred EEECCCCHHHHHH-----HHHHHHHCCCCEEE T ss_conf 9955850324567-----77777626874354 No 58 >>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} (A:) Probab=88.07 E-value=0.74 Score=27.23 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=55.4 Q ss_pred CCCCEEEEEEEC---CCCCCCCCCEEE--EEEE------CCC--------CEEEEEEECCCCCCCCCCCCCCCEEEEEEE Q ss_conf 017189999970---543568886279--9987------489--------479999973521058668145988999999 Q gi|254780791|r 31 NLSHVCVRGEIS---GYRGIHSSGHAY--FSLK------DNH--------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529) Q Consensus 31 ~~~~~~v~gEis---~~~~~~~sGH~Y--f~lk------d~~--------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529) ++.+|-|.|-|. .++. ..+|..| |+|- |.. .-++|++|...+..+.-.++.|+.|+|.|+ T Consensus 5 ~mn~v~l~Grl~~dPe~~~-~~~G~~~~~f~la~~~~~~~~~~~~~~~~t~~~~v~~~g~~A~~~~~~l~KG~~V~V~G~ 83 (178) T 1eqq_A 5 GVNKVILVGNLGQDPEVRY-MPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178) T ss_dssp CEEEEEEEEEESSSCCCCE-ETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE T ss_pred CCCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEEE T ss_conf 6758999999687987988-899998999999973652316788310001488636454899999987258998999989 Q ss_pred EEE--ECC-CC----EEEEEEEEEEE Q ss_conf 667--528-84----37999997101 Q gi|254780791|r 92 ITT--FPG-SS----KYQIIIESLIP 110 (529) Q Consensus 92 ~~~--y~~-~g----~~ql~v~~i~~ 110 (529) +.. |.. .| .+.|.++.|.. T Consensus 84 l~~~~~~~~dG~~~~~~~i~a~~i~~ 109 (178) T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGT 109 (178) T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCC T ss_pred EEECCEECCCCCEEEEEEEEEEECCC T ss_conf 76041499999889999999974473 No 59 >>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} (A:1-139,A:277-286) Probab=87.92 E-value=2 Score=23.41 Aligned_cols=107 Identities=7% Similarity=0.159 Sum_probs=58.1 Q ss_pred CCCEEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HHHCCCCCCCCCCEEEE Q ss_conf 6528999847842----58999999863059758999721001111036799999999-----74100357677758999 Q gi|254780791|r 144 IPKIIAVITSPTG----AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQL-----NTLKEGRTCPRPDIIIL 214 (529) Q Consensus 144 ~p~~i~vits~~~----a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~-----~~~~~~~~~~~~D~iii 214 (529) -|++|+||+.++. +....+.+.+.++. +++.+.+..--......+....+... ...........+|+||+ T Consensus 3 ~~~~i~ii~~~~~~~~~~~~~~i~~~L~~~g-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~ 81 (149) T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGDNK-IALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLV 81 (149) T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHTTT-CEEEEEC-----------------------------------CCCEEE T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCC-CEEEEEECHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 8889999971999899999999999999789-989998410210465446720344227642102554344456558999 Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE-EECC---CCCCHHHHHH Q ss_conf 5168884442200769999999748904885-2057---7752589886 Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIIS-AIGH---ETDWTLADYA 259 (529) Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVis-gIGH---E~D~Tl~D~V 259 (529) .=|=|.+- ..++.+....+||+. ..|| =+++..-|+- T Consensus 82 lGGDGT~L--------~a~~~~~~~~~PilgIn~G~lGFL~~~~~~d~~ 122 (149) T 1u0t_A 82 LGGDGTFL--------RAAELARNASIPVLGVNLGRIGFLAEAEAEAID 122 (149) T ss_dssp EECHHHHH--------HHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHH T ss_pred ECCCHHHH--------HHHHHHCCCCCCEEEECCCCCEEEECCCHHHHH T ss_conf 75877899--------999975035883798578830052124756789 No 60 >>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} (A:1-113) Probab=87.90 E-value=2.2 Score=23.06 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=58.7 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCEEEEEEEEEEEC------CCCEEEEEE Q ss_conf 7189999970543568886279998748947999997352105-866814598899999966752------884379999 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK-IEFLPEEGIEFLVIGKITTFP------GSSKYQIII 105 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~-~~~~~~~G~~v~~~g~~~~y~------~~g~~ql~v 105 (529) ..|.|.|=|.++|. .++=.+++|.|..+.+.|++-+..... .--.+..|.-|.+.|.+.--+ +.|.|.+.+ T Consensus 17 ~~V~i~Gwv~~~R~--~g~l~F~~lrD~s~~iQ~v~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~~~g~~Ei~~ 94 (113) T 1l0w_A 17 EEVVLEGWVNRRRD--LGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVEL 94 (113) T ss_dssp CEEEEEEEEEEEEE--CSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEE T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEE T ss_conf 98999999871884--8982999999698759999968842289995699987899999999278768867887399999 Q ss_pred EEEEECC Q ss_conf 9710168 Q gi|254780791|r 106 ESLIPSG 112 (529) Q Consensus 106 ~~i~~~g 112 (529) ++++.-+ T Consensus 95 ~~i~il~ 101 (113) T 1l0w_A 95 SALEVLA 101 (113) T ss_dssp EEEEEEE T ss_pred EEEEEEE T ss_conf 9999987 No 61 >>3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} (A:1-265) Probab=87.69 E-value=2.1 Score=23.21 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=45.6 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHH---------------CCHHHHHHHHHHCCCEEEE Q ss_conf 1036799999999741003576777589995168884----44220---------------0769999999748904885 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWH---------------FNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~---------------FN~e~laraI~~~~iPVis 245 (529) ....+|..++..++... .+.+|||..|||.. -|++. .....+..++..+|.|||+ T Consensus 54 ~m~~~l~~~~~~~~~d~------~~~~vVl~~g~~~~Fs~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Ia 127 (265) T 3h02_A 54 LTVKEXIQALADARYDD------NVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVA 127 (265) T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEEE T ss_pred HHHHHHHHHHHHHHHCC------CCCEEEEECCCCCEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 99999999999986298------851799957988300045107776422543201345431003678876235882899 Q ss_pred EECCCCCCHHHH--HHHCCCCCCCHH Q ss_conf 205777525898--864123777214 Q gi|254780791|r 246 AIGHETDWTLAD--YAADLRAPTPTG 269 (529) Q Consensus 246 gIGHE~D~Tl~D--~VAD~Ra~TPTa 269 (529) +|-=-.==--+. +.+|.|..|+.+ T Consensus 128 av~G~a~GgG~~lal~~D~~ia~~~a 153 (265) T 3h02_A 128 XVAGYSIGGGHVLHXXCDLTIAAENA 153 (265) T ss_dssp EECSEEETHHHHHHHHSSEEEEETTC T ss_pred EEECEEECCCCCEEECCCEEEECCCC T ss_conf 95070442643101145412416986 No 62 >>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} (A:1-127) Probab=87.34 E-value=1.4 Score=24.76 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=48.5 Q ss_pred CCEEEEEEECCC---C---CCCCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECC-----CC Q ss_conf 718999997054---3---568886-27999874894799999735210586681459889999-99667528-----84 Q gi|254780791|r 33 SHVCVRGEISGY---R---GIHSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPG-----SS 99 (529) Q Consensus 33 ~~~~v~gEis~~---~---~~~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~-----~g 99 (529) .++.|+|-|... + .....| ++.|.|.|+...|+|++|...+....-.+++|+-+.+. ++|.-|.. .+ T Consensus 19 ~~~~i~~RV~~~~~~~~~~~~~~~~~~~~~~l~De~G~I~~~~~~~~~~~f~~~l~~G~vy~I~~~~V~~~~~~~~~~~~ 98 (127) T 1jmc_A 19 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKN 98 (127) T ss_dssp CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECCEEEECCGGGCCCCC T ss_pred CCEEEEEEEEEECCCEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCHHCCCCEECCCEEEECCCEEEECCCCCCCCCC T ss_conf 86899999997035468777999618999999879996999980443000011130473999889789974673202698 Q ss_pred EEEEEE Q ss_conf 379999 Q gi|254780791|r 100 KYQIII 105 (529) Q Consensus 100 ~~ql~v 105 (529) .|.|.. T Consensus 99 ~~~i~f 104 (127) T 1jmc_A 99 DYEMTF 104 (127) T ss_dssp SEEEEC T ss_pred CEEEEE T ss_conf 689998 No 63 >>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1} (A:) Probab=87.32 E-value=1.4 Score=24.66 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=49.5 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCE-EEEECCCCC-H----HHH--------------------HHCCHHHHHHH Q ss_conf 111103679999999974100357677758-999516888-4----442--------------------20076999999 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDI-IILARGGGS-I----EDL--------------------WHFNDEMIVRA 235 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~-iii~RGGGS-~----eDL--------------------~~FN~e~lara 235 (529) =......+|..+|+.+... .|+ +||.+|+|. . -|+ +....+.+.+. T Consensus 66 l~~~~~~~l~~~l~~~~~d--------~~v~~vvl~g~g~~~F~aG~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (407) T 3ju1_A 66 LDLDXVRAXTVQLNLWKKD--------PLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYL 137 (407) T ss_dssp BCHHHHHHHHHHHHHHHHC--------TTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHC--------CCCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999999999998629--------99259999548999736898779885133223443115799999998899887 Q ss_pred HHHCCCEEEEEE-CCCC-CCHHHHHHHCCCCCCCHH Q ss_conf 974890488520-5777-525898864123777214 Q gi|254780791|r 236 IANSSIPIISAI-GHET-DWTLADYAADLRAPTPTG 269 (529) Q Consensus 236 I~~~~iPVisgI-GHE~-D~Tl~D~VAD~Ra~TPTa 269 (529) |..|+.|||++| ||=. -=.-+=+.+|.|..|+++ T Consensus 138 i~~~~kP~Iaai~G~a~GgG~~lal~~d~ria~e~~ 173 (407) T 3ju1_A 138 LHTYGKPVLVWGDGIVXGGGLGLXAGASHKVVTETS 173 (407) T ss_dssp HHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTC T ss_pred HHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 611584399986453455442332355545548987 No 64 >>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} (A:) Probab=87.29 E-value=1.3 Score=25.04 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=42.9 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC----CHHHHHH----------------CCHHHHHHHHHHCCCEEE Q ss_conf 10367999999997410035767775899951688----8444220----------------076999999974890488 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG----SIEDLWH----------------FNDEMIVRAIANSSIPII 244 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG----S~eDL~~----------------FN~e~laraI~~~~iPVi 244 (529) ....++..++..+.... .+-+|||.-||| +=.|+.. ---..+.+.|..||.||| T Consensus 34 ~~~~~l~~al~~~~~d~------~v~~vil~~~~~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvI 107 (289) T 3h0u_A 34 EVVRDLVALLEELAHPT------APRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTI 107 (289) T ss_dssp HHHHHHHHHHHHTTSTT------SCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEE T ss_pred HHHHHHHHHHHHHHCCC------CCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999986599------956999953554320124678888763012201123566788999999999876664 Q ss_pred EEE-CCCCC-CHHHHHHHCCCCCCCH Q ss_conf 520-57775-2589886412377721 Q gi|254780791|r 245 SAI-GHETD-WTLADYAADLRAPTPT 268 (529) Q Consensus 245 sgI-GHE~D-~Tl~D~VAD~Ra~TPT 268 (529) .+| ||=.= =.-+=+++|.|..|+. T Consensus 108 aai~G~a~GgG~~lalacD~ri~~~~ 133 (289) T 3h0u_A 108 AKLRGRARGAGSEFLLACDMRFASRE 133 (289) T ss_dssp EEECSEEETHHHHHHHHSSEEEEETT T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 11123453334421011121102441 No 65 >>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} (A:1-160) Probab=87.24 E-value=2.3 Score=22.76 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=48.7 Q ss_pred CCEEEEEECCCHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 52899984784258999999-86305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQ-RISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~-~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) .+|+.|||++.-..+.|-+. .+.+-. .-..+.++-....+.++++.+...+ +| .||+=||||.-| T Consensus 37 ~~~~liitd~~~~~~~~~v~~~l~~~~------i~~~~~~~~~~~~v~~~~~~~~~~~-------~D-~iiaiGGGs~~D 102 (160) T 3iv7_A 37 SAKVXVIAGEREXSIAHKVASEIEVAI------WHDEVVXHVPIEVAERARAVATDNE-------ID-LLVCVGGGSTIG 102 (160) T ss_dssp CSSEEEECCGGGHHHHHHHTTTSCCSE------EECCCCTTCBHHHHHHHHHHHHHTT-------CC-EEEEEESHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCE------EECCCCCCCCHHHHHHHHHHHHHCC-------CC-EEEEECCCCCCC T ss_conf 975999908427769999999710018------9767427979999999999986317-------98-899934664422 Q ss_pred HHHCCHHHHHHHHHH Q ss_conf 220076999999974 Q gi|254780791|r 224 LWHFNDEMIVRAIAN 238 (529) Q Consensus 224 L~~FN~e~laraI~~ 238 (529) . |++++. T Consensus 103 ~--------aK~~A~ 109 (160) T 3iv7_A 103 L--------AKAIAX 109 (160) T ss_dssp H--------HHHHHH T ss_pred H--------HHHHHH T ss_conf 6--------667553 No 66 >>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A* (A:1-173) Probab=87.08 E-value=2.4 Score=22.69 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=55.7 Q ss_pred CCCC-CCEEEEEECCCH--HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 1026-528999847842--5899999986305975899972100111103679999999974100357677758999516 Q gi|254780791|r 141 IPFI-PKIIAVITSPTG--AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 141 lP~~-p~~i~vits~~~--a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) +..+ .+|+.|||.+.. .+..+++..+.........+|.-.. .+-....+-++++.+...+. .+.| .||+=| T Consensus 29 l~~~g~k~~livt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~d-~iiavG 102 (173) T 2gru_A 29 IPRDEFDQYIMISDSGVPDSIVHYAAEYFGKLAPVHILRFQGGE-EYKTLSTVTNLQERAIALGA----NRRT-AIVAVG 102 (173) T ss_dssp SCTTSCSEEEEEEETTSCHHHHHHHHHHHTTTSCEEEEEECCSG-GGCSHHHHHHHHHHHHHTTC----CTTE-EEEEEE T ss_pred HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCHHHHHHHHHHHHHHHH----CCCC-CEEEEC T ss_conf 87438997999989956899999999998615975999956986-66879889999877665432----2344-036634 Q ss_pred CCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 8884442200769999999748904885 Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 218 GGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) |||.-|+.- .+......++|.|+ T Consensus 103 GGs~~D~ak-----~~a~~~~~~~p~i~ 125 (173) T 2gru_A 103 GGLTGNVAG-----VAAGMMFRGIALIH 125 (173) T ss_dssp SHHHHHHHH-----HHHHHBTTCCEEEE T ss_pred CHHHHHHHH-----HHHHHHHCCCCEEE T ss_conf 267777899-----99988714642466 No 67 >>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} (A:1-207) Probab=87.08 E-value=2.3 Score=22.75 Aligned_cols=78 Identities=21% Similarity=0.170 Sum_probs=43.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HH-------------HHHCCHHHHHHHHHHCCCEEEEEE- Q ss_conf 036799999999741003576777589995168884----44-------------220076999999974890488520- Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----ED-------------LWHFNDEMIVRAIANSSIPIISAI- 247 (529) Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eD-------------L~~FN~e~laraI~~~~iPVisgI- 247 (529) -..++..+++.+.... .+-+|||.-||+-. -| -+......+.+.+..||.|||++| T Consensus 36 ~~~~l~~~~~~~~~d~------~v~~vvi~~~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIa~v~ 109 (207) T 2ppy_A 36 FYKEFNAAIDDIRFDP------DIKVVIVXSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLE 109 (207) T ss_dssp HHHHHHHHHHHHHTCT------TCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEEC T ss_pred HHHHHHHHHHHHHHCC------CCCEEEECCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 9999999999997597------8632332134433211221110011211011122444311111001357742111100 Q ss_pred CCCCCCH-HHHHHHCCCCCCCHH Q ss_conf 5777525-898864123777214 Q gi|254780791|r 248 GHETDWT-LADYAADLRAPTPTG 269 (529) Q Consensus 248 GHE~D~T-l~D~VAD~Ra~TPTa 269 (529) ||=.--- -.=+.+|.|..++.+ T Consensus 110 G~a~ggG~~l~~~~D~~i~~~~~ 132 (207) T 2ppy_A 110 GHTVGGGLEXALACDLRFXGDEA 132 (207) T ss_dssp SEEETHHHHHHHTSSEEEEETTC T ss_pred CCCCCCCCCCCCCCCEEEEECCC T ss_conf 11335541013343058984152 No 68 >>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} (A:) Probab=87.07 E-value=1.8 Score=23.73 Aligned_cols=79 Identities=15% Similarity=0.068 Sum_probs=50.3 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHH-------------C--CHHHHHHHHHHCCCEE Q ss_conf 111036799999999741003576777589995168884----44220-------------0--7699999997489048 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWH-------------F--NDEMIVRAIANSSIPI 243 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~-------------F--N~e~laraI~~~~iPV 243 (529) ......++..++..++.. .+.+||++|+|.. .|+.. | ....+..+++.||.|| T Consensus 32 ~~~~~~el~~~~~~~~~d--------~~~~vvi~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ 103 (267) T 3hp0_A 32 NDTLIEECLQVLNQCETS--------TVTVVVLEGLPEVFCFGADFQEIYQEXKRGRKQASSQEPLYDLWXKLQTGPYVT 103 (267) T ss_dssp CSHHHHHHHHHHHHHHHS--------SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEE T ss_pred CHHHHHHHHHHHHHHHCC--------CCEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 999999999999997479--------964999977998746788600152000012456655168999999997389878 Q ss_pred EEEE-CCCC-CCHHHHHHHCCCCCCCHH Q ss_conf 8520-5777-525898864123777214 Q gi|254780791|r 244 ISAI-GHET-DWTLADYAADLRAPTPTG 269 (529) Q Consensus 244 isgI-GHE~-D~Tl~D~VAD~Ra~TPTa 269 (529) |.+| ||=. -=.-.=+.+|.|..|+++ T Consensus 104 Iaav~G~a~GgG~~lalacD~ria~~~a 131 (267) T 3hp0_A 104 ISHVRGKVNAGGLGFVSATDIAIADQTA 131 (267) T ss_dssp EEEECSEEETTHHHHHHHSSEEEECTTC T ss_pred EEEEEEEEEECCCHHHHHCCCCCCCCCC T ss_conf 9996006750320443411302235542 No 69 >>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349) Probab=87.01 E-value=2.4 Score=22.66 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=77.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 9999999976540122610016310-265289998478-42589999998630---597589997210011110367999 Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNPIP-FIPKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIAN 192 (529) Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~lP-~~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ 192 (529) ...|++.+-.++-||--....+.+. .....||+|++. +.-.+.+|+.-+.+ ..++++.++++.-...+...+. T Consensus 33 ~TrerV~~aa~eLGY~pn~~ar~L~~~~s~~Igvi~~~~~n~f~~~ii~gi~~~a~~~Gy~l~i~~~~~~~~e~~~~~-- 110 (219) T 1jye_A 33 KTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTA-- 110 (219) T ss_dssp -----------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHH-- T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH-- T ss_conf 999999999999889879888875117762899994477662267887766666765077024412343227999999-- Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC---CCCCCHHHHHH Q ss_conf 99999741003576777589995168884442200769999999748904885205---77752589886 Q gi|254780791|r 193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG---HETDWTLADYA 259 (529) Q Consensus 193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG---HE~D~Tl~D~V 259 (529) ++.+-.. ++|.||+.=.+ .+++.+........+|||.-=. +..|...+||- T Consensus 111 -ie~l~~~-------~vdGIIi~~~~--------~~~~~~~~~l~~~~iPvV~iD~~~~~~~~sV~~D~~ 164 (219) T 1jye_A 111 -VHNLLAQ-------RVSGLIINYPL--------DDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSFR 164 (219) T ss_dssp -HHHHHTT-------TCSCEEEESCC--------CHHHHHHHHHHTTTSCEEESSSCTTSSSCEEEECHH T ss_pred -HHHHHHC-------CCCCCCCCCCC--------CCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECHH T ss_conf -9999963-------77763013664--------302567999850589668851467888874663199 No 70 >>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} (A:1-219) Probab=86.88 E-value=0.76 Score=27.10 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=55.5 Q ss_pred CCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 2652899984784258--99999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 143 FIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 143 ~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) .-.+++.|||.+..+- ...+...+..+. +.++ .-|-++.....+.+++..+... ++| .||+=|||| T Consensus 89 ~~~~~~~ivtd~~~~~~~~~~i~~~l~~~~-~~v~---~~v~~~~~~~~v~~~~~~~~~~-------~~d-~iIaiGGGs 156 (219) T 1ta9_A 89 WATKSAVVLADQNVWNICANKIVDSLSQNG-MTVT---KLVFGGEASLVELDKLRKQCPD-------DTQ-VIIGVGGGK 156 (219) T ss_dssp TCSSEEEEEEEHHHHHHTHHHHHHHHHHTT-CEEE---EEEECSCCCHHHHHHHHTTSCT-------TCC-EEEEEESHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCC-CEEE---EEEECCCCCHHHHHHHHHHHHC-------CCC-EEEEECCCH T ss_conf 299969999896688999999999998769-9799---9983899899999999997513-------899-899957953 Q ss_pred HHHHHHCCHHHHHHHHHHCC------CEEEEEECCCC Q ss_conf 44422007699999997489------04885205777 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSS------IPIISAIGHET 251 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~------iPVisgIGHE~ 251 (529) .-|+ |++++-.. ||..+|.|=|. T Consensus 157 v~D~--------aK~~a~~~~~p~i~iPTta~t~sev 185 (219) T 1ta9_A 157 TMDS--------AKYIAHSMNLPSIICPTTASSDAAT 185 (219) T ss_dssp HHHH--------HHHHHHHTTCCEEEEESSCSCSCTT T ss_pred HHHH--------HHCCCCCCCCEEEEEECCCCCCCCC T ss_conf 7652--------1012245552035541234455455 No 71 >>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, nucleus, zinc, zinc-finger; 2.30A {Xenopus laevis} PDB: 3h15_A (A:1-149) Probab=86.78 E-value=0.57 Score=28.26 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=54.8 Q ss_pred CEEEEEEECCCCCC-CCCC--EEEEEEECCC---CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE Q ss_conf 18999997054356-8886--2799987489---4799999735210586681459889999996675288437999997 Q gi|254780791|r 34 HVCVRGEISGYRGI-HSSG--HAYFSLKDNH---SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIES 107 (529) Q Consensus 34 ~~~v~gEis~~~~~-~~sG--H~Yf~lkd~~---a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~ 107 (529) .+.|-|=|++.+.. .++| -.+++|-|.. +.+.|++|...+.+..-.++.|.-+++.|++... +++.++++.. T Consensus 58 ~v~v~giv~~~~~~~tk~g~~~a~~~l~D~~g~~~~ie~~iF~~~~~~~~~~l~~~~~~~i~g~v~~~--~~~~~~~~~~ 135 (149) T 3ebe_A 58 WVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKP--KEGTDEVCLS 135 (149) T ss_dssp EEEEEEEEEEECC-------CCEEEEEECSSSTTCCEEEEECHHHHHHHTTCCTTEEEEEESCEECCC--CTTCCCEEEE T ss_pred EEEEEEEEECCCCEECCCCCCEEEEEEECCCCCCEEEEEEEECHHHHHHCCCCCCEEEEEECCCCCCC--CCCCCCEEEE T ss_conf 89999999657712736898479999760678860899999566878650758842999989901778--8998725899 Q ss_pred EEE Q ss_conf 101 Q gi|254780791|r 108 LIP 110 (529) Q Consensus 108 i~~ 110 (529) |.. T Consensus 136 v~~ 138 (149) T 3ebe_A 136 VDN 138 (149) T ss_dssp CSS T ss_pred ECC T ss_conf 768 No 72 >>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A (A:1-200) Probab=86.46 E-value=2.5 Score=22.52 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=52.2 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC---------------HHHHHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 11103679999999974100357677758999516888---------------444220076999999974890488520 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS---------------IEDLWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS---------------~eDL~~FN~e~laraI~~~~iPVisgI 247 (529) ......++..++..+....+ + .+||.+|+|. ..+-+.+.-..+.+++..||.|+|++| T Consensus 30 ~~~~~~~l~~~l~~~~~d~~------~-~vvil~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Ia~v 102 (200) T 2pbp_A 30 SRQMVAEIVAAVEAFDRNEK------V-RVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAV 102 (200) T ss_dssp CHHHHHHHHHHHHHHHHCTT------C-CEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEEEEE T ss_pred CHHHHHHHHHHHHHHHHCCC------C-EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 99999999999999860998------0-3888515543222102577763000245777776656665214799789999 Q ss_pred -CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf -57775-25898864123777214 Q gi|254780791|r 248 -GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 248 -GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) ||-.- =...=+.+|.|..++.+ T Consensus 103 ~G~a~G~G~~lala~D~~ia~~~a 126 (200) T 2pbp_A 103 NGLALGGGFELALSCDLIVASSAA 126 (200) T ss_dssp CSEEETHHHHHHHTSSEEEEETTC T ss_pred ECEEEEHHHHHHHCCCEEEECCCC T ss_conf 265860778998515779985997 No 73 >>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A (A:1-48,A:423-534) Probab=86.40 E-value=2.6 Score=22.42 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=62.6 Q ss_pred CCHHHHHHHHHHHHHH------CC--CCEEEEE-EECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCC- Q ss_conf 2299999999999740------01--7189999-970543568886279998748947999997352105866814598- Q gi|254780791|r 15 YSVSELSYHLKHIVES------NL--SHVCVRG-EISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGI- 84 (529) Q Consensus 15 ~svs~l~~~i~~~l~~------~~--~~~~v~g-Eis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~- 84 (529) ++.++++..+=..|+. .+ +.+++++ .|.+++. -..+|+=|+|++ ++|+.|...-. ..|. T Consensus 60 L~~~~i~~eli~~L~~LePFG~GNpePiF~~~~v~I~~~r~-iGk~Hlkl~L~~----~~aI~Fn~~~~------~~~~~ 128 (160) T 2zxr_A 60 LPEPGLLPQVFRELALLEPYGEGNPEPLFLLFGAPEEARRL-GEGRHLAFRLKG----VRVLAWKQGDL------ALPPE 128 (160) T ss_dssp CCCGGGHHHHHHHHGGGCSCSSSSCCCCEEEEECCEEEEES-SSSSEEEEEETT----EEEEEECCSSC------SCCSS T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEEE-CCCCEEEEEEEC----CCEEEECCCCC------CCCCE T ss_conf 47241139999999961977899998679734858998896-278479999867----99899889865------67987 Q ss_pred -EEEEEEEEEEECCCCEEEEEEEEEEECC Q ss_conf -8999999667528843799999710168 Q gi|254780791|r 85 -EFLVIGKITTFPGSSKYQIIIESLIPSG 112 (529) Q Consensus 85 -~v~~~g~~~~y~~~g~~ql~v~~i~~~g 112 (529) .|+.+-.++.|..+-++|+.|.++.+++ T Consensus 129 idiv~~l~~N~yrG~~s~Ql~I~Dir~a~ 157 (160) T 2zxr_A 129 VEVAGLLSENAWNGHLAYEVQAVDLRKPE 157 (160) T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCC T ss_pred EEEEEEEEEEEECCEEEEEEEEEECCCCC T ss_conf 99999971786699745999999805743 No 74 >>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} (A:) Probab=86.30 E-value=2.6 Score=22.37 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=38.2 Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEE-EECCCCEEEEEEEE Q ss_conf 7999874894799999735210586681459889999-9966-75288437999997 Q gi|254780791|r 53 AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKIT-TFPGSSKYQIIIES 107 (529) Q Consensus 53 ~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~-~y~~~g~~ql~v~~ 107 (529) ..++|-|+.+.|++++|...+.... .++.|+-|++. |+++ .| +|+++|.+.. T Consensus 45 ~~~~i~D~Tg~i~~~lw~~~~~~~~-~l~~gd~v~i~~~~v~~~~--~g~~~L~~~~ 98 (115) T 2k50_A 45 ANVIIADDTGELRAVFWTENIKLLK-KFREGDVIRIKDVNIRGGF--GGRKEAHLMP 98 (115) T ss_dssp EEEEEEETTEEEEEEEETTGGGGGG-TCCTTSEEEEEEEEECCCS--SSSCEEEECT T ss_pred EEEEEECCCCEEEEEEECCHHHHHC-CCCCCCEEEEEEEEEECCC--CCCEEEEECC T ss_conf 9999976998799999863157643-7999999999634990022--9969999899 No 75 >>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} (A:) Probab=86.25 E-value=2.3 Score=22.80 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=46.0 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----------------HH--HHHCCHHHHHHHHHHCCCEEE Q ss_conf 111036799999999741003576777589995168884----------------44--220076999999974890488 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----------------ED--LWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----------------eD--L~~FN~e~laraI~~~~iPVi 244 (529) ....-.++..+|..+....+ +. +||++|.|.. ++ -|......+..+++.||.||| T Consensus 29 ~~~~~~~l~~~l~~~~~d~~------~~-~vii~g~g~~ffsggd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkP~I 101 (260) T 1sg4_A 29 SLEFLTELVISLEKLENDKS------FR-GVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLV 101 (260) T ss_dssp CHHHHHHHHHHHHHHHHCTT------CC-EEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEE T ss_pred CHHHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 99999999999999973999------56-999965765322035453322121221100011035778776304774322 Q ss_pred EEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 520-577752-5898864123777214 Q gi|254780791|r 245 SAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 245 sgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) ++| ||=.=- ...=+.+|.|..|+.+ T Consensus 102 aav~G~a~GgG~~la~~~D~~ia~~~a 128 (260) T 1sg4_A 102 SAINGACPAGGCLVALTCDYRILADNP 128 (260) T ss_dssp EEECEEBCHHHHHHHTTSSEEEEECCT T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 210113433333321100044541112 No 76 >>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A (A:) Probab=86.11 E-value=1.4 Score=24.69 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=66.9 Q ss_pred HHHHHHHHCCCCCCCCCCC--CCCCEEEEEECCCH--HHHHHHHHHHHHCCC-EEEE-EEECCCCCCCHHHHHHHHHHHH Q ss_conf 9976540122610016310--26528999847842--589999998630597-5899-9721001111036799999999 Q gi|254780791|r 124 KKKLLEEGLFSDQHKNPIP--FIPKIIAVITSPTG--AVIRDILQRISCRFP-LRVI-IFPVKVQGDECPKEIANAILQL 197 (529) Q Consensus 124 k~~L~~eGlfd~~~k~~lP--~~p~~i~vits~~~--a~~~D~~~~~~~r~p-~~~~-~~p~~vQG~~a~~~i~~ai~~~ 197 (529) ++.|+.||.+-....++.+ .=|.+|+|+--..+ .-..++++.+..+.. +... .+...+.-......++.. . T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~r~~~i~iid~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~ 88 (301) T 2vdj_A 12 RKVLQEENIFVMTKERAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTS---F 88 (301) T ss_dssp -----CCSCCCCCCCCCCCTTSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------C---C T ss_pred HHHHHHCCCEEECHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHH---H T ss_conf 7899868977757545233666332136550789717899999998567766458898772555389987899999---8 Q ss_pred HHHCCCCCCCCCCEEEEECCCCCHHHH----HHCCHHHHHHHHHHCCCEEE Q ss_conf 741003576777589995168884442----20076999999974890488 Q gi|254780791|r 198 NTLKEGRTCPRPDIIILARGGGSIEDL----WHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 198 ~~~~~~~~~~~~D~iii~RGGGS~eDL----~~FN~e~laraI~~~~iPVi 244 (529) ....+......+|.|||.=|.|+..|. |.=....+++.+.+-.+||+ T Consensus 89 ~~~~~~~~~~~~DgiIi~Gg~~~~~~~~~~~~~~~~~~li~~~~~~~~Pil 139 (301) T 2vdj_A 89 YKTFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTL 139 (301) T ss_dssp EECHHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEE T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCEE T ss_conf 784998632545479971897677666651159999999999997278817 No 77 >>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:) Probab=85.86 E-value=2.6 Score=22.34 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=57.1 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH- Q ss_conf 2899984784258999999863059758999721001111036799999999741003576777589995168884442- Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL- 224 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL- 224 (529) ++|+||-...+-.++.|.+.+.+.. .++.++|... +...+. ....+|.|||.=|+++..|- T Consensus 4 ~~iliid~~~~~~~~~~~~~l~~~g-~~~~~~~~~~-~~~~~~----------------~~~~~DgiIi~GGp~~~~~~~ 65 (250) T 3l83_A 4 KPVMIIQFSASEGPGHFGDFLAGEH-IPFQVLRMDR-SDPLPA----------------EIRDCSGLAMMGGPMSANDDL 65 (250) T ss_dssp -CEEEEECSSSCCCTHHHHHHHHTT-CCEEEEEGGG-TCCCCS----------------CGGGSSEEEECCCSSCTTSCC T ss_pred CEEEEEECCCCCCCHHHHHHHHHCC-CEEEEEECCC-CCCCCC----------------CHHHCCEEEEECCCCCCCCCC T ss_conf 6499996789998059999998489-8799997899-987877----------------864599999909999777878 Q ss_pred -HHCCHHHHHHHHHHCCCEEE Q ss_conf -20076999999974890488 Q gi|254780791|r 225 -WHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 225 -~~FN~e~laraI~~~~iPVi 244 (529) |.-+...+.+..++..+||+ T Consensus 66 ~~~~~~~~li~~~~~~~~PvL 86 (250) T 3l83_A 66 PWMPTLLALIRDAVAQRVPVI 86 (250) T ss_dssp TTHHHHHHHHHHHHHTTCCEE T ss_pred HHHHHHHHHHHHHHHCCCCEE T ss_conf 668999999999998699889 No 78 >>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} (A:1-183) Probab=85.76 E-value=2.7 Score=22.17 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=47.9 Q ss_pred CCEEEEEECCCHH---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 5289998478425---8999999863059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 145 PKIIAVITSPTGA---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 145 p~~i~vits~~~a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) .+++.|||+++.. ....++..+.... +.+.+| .-+.++.....+-++++.+...+ +| .||+=||||. T Consensus 31 ~~~~livt~~~~~~~~~~~~i~~~l~~~~-i~~~~~-~~~~~~~t~~~v~~~~~~~~~~~-------~D-~iiaiGGGsv 100 (183) T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKXDAAG-LAWAIY-DGVVPNPTITVVKEGLGVFQNSG-------AD-YLIAIGGGSP 100 (183) T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTT-CEEEEE-CBCCSSCBHHHHHHHHHHHHHHT-------CS-EEEEEESHHH T ss_pred CCEEEEEECCCHHHCCHHHHHHHHHHHCC-CEEEEE-CCCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCCCC T ss_conf 98799998977565827999999998759-839998-78479979999999865550358-------88-7997688641 Q ss_pred HHHH Q ss_conf 4422 Q gi|254780791|r 222 EDLW 225 (529) Q Consensus 222 eDL~ 225 (529) -|.. T Consensus 101 ~D~a 104 (183) T 1rrm_A 101 QDTC 104 (183) T ss_dssp HHHH T ss_pred CHHH T ss_conf 0489 No 79 >>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} (A:1-198) Probab=85.69 E-value=2.7 Score=22.14 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=48.2 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH------HH-------------HHHCCHHHHHHHHHHCCCEEEE Q ss_conf 1036799999999741003576777589995168884------44-------------2200769999999748904885 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI------ED-------------LWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~------eD-------------L~~FN~e~laraI~~~~iPVis 245 (529) .-..++.+++..+....+ +-+|||.=+|..+ .+ -|..+-..+.+++..||.|+|+ T Consensus 26 ~~~~~l~~~l~~~~~d~~------~~vvil~g~~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia 99 (198) T 1uiy_A 26 EXALSLLQALDDLEADPG------VRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLXRLFHRVYTYPKPTVA 99 (198) T ss_dssp HHHHHHHHHHHHHHHCTT------CCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE T ss_pred HHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 999999999999973999------64999966543322111044432012100034444322100267799858988899 Q ss_pred EE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 20-577752-5898864123777214 Q gi|254780791|r 246 AI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 246 gI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) +| ||=.-. .-.=+.+|.|..++++ T Consensus 100 ~i~G~a~G~G~~l~l~~D~~ia~~~a 125 (198) T 1uiy_A 100 AVNGPAVAGGAGLALACDLVVXDEEA 125 (198) T ss_dssp EECSCEETHHHHHHHTSSEEEEETTC T ss_pred EECCEEEEHHHHHHHHHHHHHHHHHH T ss_conf 98686741335877603265554555 No 80 >>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} (A:1-246,A:510-556) Probab=85.60 E-value=2.8 Score=22.11 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=42.7 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHHHHC---------------CHH--HHHHHHHHCCCE Q ss_conf 110367999999997410035767775899951688-84---442200---------------769--999999748904 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDLWHF---------------NDE--MIVRAIANSSIP 242 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL~~F---------------N~e--~laraI~~~~iP 242 (529) ..-..+|.+|++.+.... +.+.++||..+.| .+ -||-.| .+. .+.+.|..||+| T Consensus 57 ~~~~~~l~~al~~~~~~~-----~~~~~lVi~~~~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P 131 (293) T 2w3p_A 57 LGVDIELHDAIQRIRFEH-----PEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLK 131 (293) T ss_dssp HHHHHHHHHHHHHHHHHC-----TTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCE T ss_pred HHHHHHHHHHHHHHHHCC-----CCEEEEEEEECCCCEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999997169-----985999997089980643848886742574014568999999988888887607998 Q ss_pred EEEEE-CCCCCC-HHHHHHHCCC Q ss_conf 88520-577752-5898864123 Q gi|254780791|r 243 IISAI-GHETDW-TLADYAADLR 263 (529) Q Consensus 243 VisgI-GHE~D~-Tl~D~VAD~R 263 (529) ||++| ||-.=- .-.-+.+|.| T Consensus 132 vVAai~G~a~GgG~~lala~D~~ 154 (293) T 2w3p_A 132 FLAAVNGACAGGGYELALACDEI 154 (293) T ss_dssp EEEEECSEEETHHHHHHHHSSEE T ss_pred EEEEEECCCCCCCHHHHHHCCCH T ss_conf 89998151035414666522301 No 81 >>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} (A:) Probab=84.65 E-value=3 Score=21.77 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=68.2 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC Q ss_conf 99765401226100163102652899984784258999999863059758999721001111036799999999741003 Q gi|254780791|r 124 KKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEG 203 (529) Q Consensus 124 k~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~ 203 (529) ..+|-+|=..+.+.+.+.|.-..+|+||.- +..+.|+++-+.+.. +++.++|..- T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~I~vid~--~~~~~~~~~~l~~~G-~~~~~~~~~~---------------------- 56 (219) T 1q7r_A 2 HHHHHHSSGVDLGTENLYFQSNXKIGVLGL--QGAVREHVRAIEACG-AEAVIVKKSE---------------------- 56 (219) T ss_dssp ----------------CCCCCCCEEEEESC--GGGCHHHHHHHHHTT-CEEEEECSGG---------------------- T ss_pred CCCCCCCCCCCCCCCCCHHCCCCEEEEEEC--CCCHHHHHHHHHHCC-CCEEEECCHH---------------------- T ss_conf 754455456322454100015977999963--884999999999879-9699989989---------------------- Q ss_pred CCCCCCCEEEEECCCCCHHH--HHHCCHHHHHHHHHHCCCEEEE Q ss_conf 57677758999516888444--2200769999999748904885 Q gi|254780791|r 204 RTCPRPDIIILARGGGSIED--LWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 204 ~~~~~~D~iii~RGGGS~eD--L~~FN~e~laraI~~~~iPVis 245 (529) ....+|.|||.=|-++..| .|.-+.-.+++...+..+||+- T Consensus 57 -~l~~~Dgvil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG 99 (219) T 1q7r_A 57 -QLEGLDGLVLPGGESTTXRRLIDRYGLXEPLKQFAAAGKPXFG 99 (219) T ss_dssp -GGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEE T ss_pred -HHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEE T ss_conf -9826999998999879999885457709999987546997899 No 82 >>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, structural genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} (A:) Probab=84.63 E-value=3 Score=21.77 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=42.7 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHC---------------C--HHHHHHHHHHCCC Q ss_conf 1111036799999999741003576777589995168884---442200---------------7--6999999974890 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHF---------------N--DEMIVRAIANSSI 241 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~F---------------N--~e~laraI~~~~i 241 (529) -......++.++++.++... ..+|||.-+|+++ -||..| . -..+..+|..||. T Consensus 50 l~~~~~~~l~~al~~~~~~~-------~~~vii~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pk 122 (280) T 2f6q_A 50 INTEXYHEIXRALKAASKDD-------SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPK 122 (280) T ss_dssp BCHHHHHHHHHHHHHHHHSS-------CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCS T ss_pred CCHHHHHHHHHHHHHHHCCC-------CCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 89999999999999986398-------65799970475333453213320343333321110013567777665423578 Q ss_pred EEEEEEC-CCCC-CHHHHHHHCCCCCCCHH Q ss_conf 4885205-7775-25898864123777214 Q gi|254780791|r 242 PIISAIG-HETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 242 PVisgIG-HE~D-~Tl~D~VAD~Ra~TPTa 269 (529) |||.+|. |=.- =...=+.+|+|..++.+ T Consensus 123 p~Iaav~G~a~GgG~~lalacD~ria~~~a 152 (280) T 2f6q_A 123 PLIAVVNGPAVGISVTLLGLFDAVYASDRA 152 (280) T ss_dssp CEEEEECSCEETHHHHGGGGCSEEEEETTC T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 649998794234565420010244252085 No 83 >>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} (A:) Probab=84.23 E-value=3.1 Score=21.63 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=44.2 Q ss_pred CCCEEEEEEECCCCC--CCCCC---EE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEE Q ss_conf 171899999705435--68886---27-9998748947999997352105866814598899999-96675288437999 Q gi|254780791|r 32 LSHVCVRGEISGYRG--IHSSG---HA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQII 104 (529) Q Consensus 32 ~~~~~v~gEis~~~~--~~~sG---H~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~ 104 (529) ...|-|.|.|.++.. ..++| +. .+.|.|+.+.|+.++|.- ..+.|+-|.+.+ +++-| +|.++|. T Consensus 13 ~~~v~v~g~V~~v~~~~~~~~g~~~~~~~~~i~D~Tg~I~~tlW~~-------~~~~Gdvv~i~~~~v~~~--~G~~~l~ 83 (106) T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------QLQDSDVVRIDNARVAQF--NGYLSLS 83 (106) T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------CCCTTEEEEEEEEEEEEE--TTEEEEE T ss_pred CCCEEEEEEEEEECCCEEEECCCEEEEEEEEEECCCCEEEEEEECC-------CCCCCCEEEEEEEEEEEE--CCEEEEE T ss_conf 9828999999496267798689868999999987997899999599-------878998999901899788--9979999 Q ss_pred EE Q ss_conf 99 Q gi|254780791|r 105 IE 106 (529) Q Consensus 105 v~ 106 (529) +. T Consensus 84 ~~ 85 (106) T 2k75_A 84 VG 85 (106) T ss_dssp EC T ss_pred EC T ss_conf 89 No 84 >>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} (A:281-550) Probab=83.72 E-value=3.3 Score=21.47 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=56.6 Q ss_pred CHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC------------------CCCCCCCEEEEE Q ss_conf 42589999998630597-58999721001111036799999999741003------------------576777589995 Q gi|254780791|r 155 TGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEG------------------RTCPRPDIIILA 215 (529) Q Consensus 155 ~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~------------------~~~~~~D~iii~ 215 (529) +-.-+.++...+..--. -.|-+.+..+.|.++..+++.||...-..... .....+|.||+. T Consensus 3 ~~~~~~~~~~~~~~~~~~p~Igiv~~~~~~~~n~~s~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgivl~ 82 (270) T 1vco_A 3 NLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVP 82 (270) T ss_dssp CCHHHHHHHHHHHSCSEEEEEEEEESCC---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEEC T ss_pred CHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEC T ss_conf 75899999999858676447987404555579999998899887774396258997133122015688876337817832 Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEEE Q ss_conf 16888444220076999999974890488 Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPVi 244 (529) -|+|+..|. .....++.+.+..+||+ T Consensus 83 ggp~~~~~~---~~~~~i~~~~~~~~PiL 108 (270) T 1vco_A 83 GGFGVRGIE---GKVRAAQYARERKIPYL 108 (270) T ss_dssp CCCSSTTHH---HHHHHHHHHHHTTCCEE T ss_pred CCCCCCCCH---HHHHHHHHHHHCCCHHH T ss_conf 667767606---89999998987471288 No 85 >>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} (A:1-142) Probab=83.53 E-value=3.3 Score=21.41 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=53.9 Q ss_pred CCCCCC---EEEEEECCCHHHH--HH-HHHHHH--HCCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 102652---8999847842589--99-999863--05975899972100111----103679999999974100357677 Q gi|254780791|r 141 IPFIPK---IIAVITSPTGAVI--RD-ILQRIS--CRFPLRVIIFPVKVQGD----ECPKEIANAILQLNTLKEGRTCPR 208 (529) Q Consensus 141 lP~~p~---~i~vits~~~a~~--~D-~~~~~~--~r~p~~~~~~p~~vQG~----~a~~~i~~ai~~~~~~~~~~~~~~ 208 (529) .|...+ +|+||+..++.-. ++ |-+-++ +.+++++.+-|..-... +...+=++.|..+- ..+. T Consensus 6 ~P~~Lk~Gd~I~viapSs~~~~~~~~~~~~~i~~l~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~------~d~~ 79 (142) T 3gjz_A 6 LPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALI------RNPN 79 (142) T ss_dssp CCCCCCTTCEEEEECSSCCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHH------TCTT T ss_pred CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH------HCCC T ss_conf 8999888599999969986655599999999999985898998665314345645799999999999863------1568 Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHH Q ss_conf 758999516888444220076999999 Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRA 235 (529) Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~lara 235 (529) +|+|+-+|||-..--|-.+=|+++.++ T Consensus 80 i~~I~~~rGGyg~~riL~~ld~~~i~~ 106 (142) T 3gjz_A 80 VSCIXSTIGGXNSNSLLPYIDYDAFQN 106 (142) T ss_dssp EEEEEESCCCSCGGGGGGGCCHHHHHH T ss_pred CCEEEECCCHHHHHHHHCCCCHHHHHC T ss_conf 899998966789987501345445500 No 86 >>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:1-100,A:232-251) Probab=83.42 E-value=3.3 Score=21.38 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=58.7 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) ..||||.+. +..-+..|++-+.+ ++++.+.++++. +.+....+.++.+... ++|.||++ T Consensus 9 ~~Igvi~p~~~~~f~~~i~~gi~~aa~~~gy~v~i~~~~----~d~~~~~~~i~~l~~~-------~vDGIIi~------ 71 (120) T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD----NDIKKAQGYLATFVSH-------NCTGMIST------ 71 (120) T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT----TCHHHHHHHHHHHHHT-------TCSEEEEC------ T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCCEEEC------ T ss_conf 989999299967899999999999999869999999689----9989999999999844-------66422531------ Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 4422007699999997489048852 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisg 246 (529) +.+.........+..||||.- T Consensus 72 ----~~~~~~~~~~~~~~~iPvV~i 92 (120) T 3e61_A 72 ----AFNENIIENTLTDHHIPFVFI 92 (120) T ss_dssp ----GGGHHHHHHHHHHC-CCEEEG T ss_pred ----CCCHHHHHHHHHHCCCCEEEE T ss_conf ----431155787764037530355 No 87 >>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} (A:) Probab=83.24 E-value=3.4 Score=21.32 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=49.0 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHC--------------CHHHHHHHHHHCCCEEEEE Q ss_conf 1036799999999741003576777589995168884----442200--------------7699999997489048852 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHF--------------NDEMIVRAIANSSIPIISA 246 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~F--------------N~e~laraI~~~~iPVisg 246 (529) ....++..++..++... .+-+||+.-+||.. -|++.+ ....+..++..||.|||++ T Consensus 27 ~~~~~l~~al~~~~~d~------~v~~vvi~~~~~~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa 100 (250) T 2a7k_A 27 TLETSVKDALARANADD------SVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA 100 (250) T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 99999999999997399------933999974145333223343322233323331012333211233310122223432 Q ss_pred E-CCCCC-CHHHHHHHCCCCCCCHHH Q ss_conf 0-57775-258988641237772145 Q gi|254780791|r 247 I-GHETD-WTLADYAADLRAPTPTGA 270 (529) Q Consensus 247 I-GHE~D-~Tl~D~VAD~Ra~TPTaA 270 (529) | ||=.= =.-.=+.+|.|..|+++- T Consensus 101 v~G~a~GgG~~lal~~D~ria~~~a~ 126 (250) T 2a7k_A 101 VDGYAIGMGFQFALMFDQRLMASTAN 126 (250) T ss_dssp ECSEEETHHHHHHTTSSEEEEETTCE T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 02345454324101243121123342 No 88 >>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} (A:1-118) Probab=83.13 E-value=3.4 Score=21.29 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=52.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHH--CCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 28999847842589999998630--5975899972100111----10367999999997410035767775899951688 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC--RFPLRVIIFPVKVQGD----ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~--r~p~~~~~~p~~vQG~----~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) .+|+||++.++..-.++-..++. .|++++.+.+..-.+. +...+=++-|..+-. .+.+|+|+-+|||= T Consensus 18 d~V~iiapSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dl~~a~~------d~~v~aI~~~rGGy 91 (118) T 1zl0_A 18 GRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFD------MPDITAVWCLRGGY 91 (118) T ss_dssp SEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHH------STTEEEEEESCCSS T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHHHH------CCCCCEEEECCCHH T ss_conf 999999489878999999999999968999986766100157657999999999986511------67888899885788 Q ss_pred CHHHHHHCCHHHHHH Q ss_conf 844422007699999 Q gi|254780791|r 220 SIEDLWHFNDEMIVR 234 (529) Q Consensus 220 S~eDL~~FN~e~lar 234 (529) ..-.|-.+=|..+.+ T Consensus 92 ga~rlL~~Ld~~~i~ 106 (118) T 1zl0_A 92 GCGQLLPGLDWGRLQ 106 (118) T ss_dssp CGGGGTTTCCHHHHH T ss_pred HHHHHHCCCCHHHHH T ss_conf 998763023212333 No 89 >>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} (A:) Probab=83.02 E-value=3.4 Score=21.25 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=46.1 Q ss_pred CCEEEEEEECCCCC------CCCCCEE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEE-EEEEEEECCCCEEEEE Q ss_conf 71899999705435------6888627-99987489479999973521058668145988999-9996675288437999 Q gi|254780791|r 33 SHVCVRGEISGYRG------IHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLV-IGKITTFPGSSKYQII 104 (529) Q Consensus 33 ~~~~v~gEis~~~~------~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~-~g~~~~y~~~g~~ql~ 104 (529) .++.|+|-|..... ....|++ .+.|-|+.+.|++++|..... .++.|+-|.+ .++++.| +|.|+|. T Consensus 13 ~~~~i~~rV~~~~~~r~~~~~~~~~~~~~~~i~DetG~I~~t~w~~~~~----~l~~G~v~~i~n~~v~~~--~g~~~l~ 86 (119) T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTAF--KGQVQLN 86 (119) T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE--TTEEEEE T ss_pred CCEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCEEEEEEECCCCC----CCCCCCEEEEEEEEEEEE--CCEEEEE T ss_conf 8789999999887873475289977999999985998799998236314----389999999955699997--9989999 Q ss_pred EE Q ss_conf 99 Q gi|254780791|r 105 IE 106 (529) Q Consensus 105 v~ 106 (529) +. T Consensus 87 ~~ 88 (119) T 1o7i_A 87 AG 88 (119) T ss_dssp EC T ss_pred EC T ss_conf 89 No 90 >>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} (A:1-284) Probab=82.85 E-value=3.5 Score=21.20 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=48.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHH--------------HHCCH--HHHHHHHHHCCCE Q ss_conf 111036799999999741003576777589995168884----442--------------20076--9999999748904 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDL--------------WHFND--EMIVRAIANSSIP 242 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL--------------~~FN~--e~laraI~~~~iP 242 (529) ...-..++..++..++...+ +- +||.+|+|.. -|| ..|.. ..+..++..||.| T Consensus 33 ~~~~~~~l~~al~~~~~d~~------~~-~viitg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP 105 (284) T 1wdk_A 33 NRLTLNELRQAVDAIKADAS------VK-GVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVP 105 (284) T ss_dssp CHHHHHHHHHHHHHHHHCTT------CC-EEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSC T ss_pred CHHHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999999975889------66-999978899615273889797354788678877678999999999849898 Q ss_pred EEEEE-CCCC-CCHHHHHHHCCCCCCCHH Q ss_conf 88520-5777-525898864123777214 Q gi|254780791|r 243 IISAI-GHET-DWTLADYAADLRAPTPTG 269 (529) Q Consensus 243 VisgI-GHE~-D~Tl~D~VAD~Ra~TPTa 269 (529) ||++| ||-. ==...=+.+|+|..+|.+ T Consensus 106 vIaav~G~a~GgG~~lalacD~ria~~~a 134 (284) T 1wdk_A 106 TVAAINGIALGGGLEMCLAADFRVMADSA 134 (284) T ss_dssp EEEEECSCEETHHHHHHHTSSEEEEETTC T ss_pred EEEEECCCCHHHHHHHHHHCCEEEECCCC T ss_conf 99997874318999999968999981997 No 91 >>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} (A:1-213) Probab=82.57 E-value=3.4 Score=21.28 Aligned_cols=78 Identities=24% Similarity=0.266 Sum_probs=46.3 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHCCH-------------HHHHHHHHHCCCEEEEE Q ss_conf 1036799999999741003576777589995168884-----44220076-------------99999997489048852 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHFND-------------EMIVRAIANSSIPIISA 246 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~FN~-------------e~laraI~~~~iPVisg 246 (529) ....++.++++.+....+ +- +||.+|+|.. .|+....+ ..+.+.+..||.|+|++ T Consensus 39 ~~~~~l~~~~~~~~~~~~------v~-~ivl~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Ia~ 111 (213) T 1hzd_A 39 NLIKMLSKAVDALKSDKK------VR-TIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAA 111 (213) T ss_dssp THHHHHHHHHHHHHHCSS------CS-EEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE T ss_pred HHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 999999999999985899------35-99997699881589987455540452025677899999999975699988999 Q ss_pred E-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 0-577752-5898864123777214 Q gi|254780791|r 247 I-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 247 I-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) | ||-.-- .-.=+.+|.|..++.+ T Consensus 112 v~G~a~GgG~~lal~~D~~ia~~~a 136 (213) T 1hzd_A 112 IDGLALGGGLELALACDIRVAASSA 136 (213) T ss_dssp ESEEEETHHHHHHHHSSEEEEETTC T ss_pred ECCEEECCCCEECCCCCEEEECCCC T ss_conf 8997651673102441004215453 No 92 >>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} (A:1-226) Probab=82.18 E-value=2.4 Score=22.66 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=43.6 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHH------H--HCCHHHHHHHHHHCCCEEEEEE-CC Q ss_conf 1111036799999999741003576777589995168884---442------2--0076999999974890488520-57 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDL------W--HFNDEMIVRAIANSSIPIISAI-GH 249 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL------~--~FN~e~laraI~~~~iPVisgI-GH 249 (529) -......++.++++.++.. ..-+|||..+|+.+ -|+ . ...-..+.+.+..||.|+|++| || T Consensus 45 l~~~~~~~l~~~l~~~~~~-------~~~~vvi~g~g~~F~~G~d~~~~~~~~~~~~~~~~~~~~l~~~pkp~Ia~v~G~ 117 (226) T 3he2_A 45 LNSQLVEELTQAIRKAGDG-------SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGP 117 (226) T ss_dssp BCHHHHHHHHHHHHCC----------CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSC T ss_pred CCHHHHHHHHHHHHHCCCC-------CCEEEEEECCCCCEECCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCE T ss_conf 9999999999999961189-------955999978998465165650334301235899999999985899899997787 Q ss_pred CCCC-HHHHHHHCCCCCCCHH Q ss_conf 7752-5898864123777214 Q gi|254780791|r 250 ETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 250 E~D~-Tl~D~VAD~Ra~TPTa 269 (529) =.-- ...=+.+|+|..+..+ T Consensus 118 a~GgG~~lal~~D~~i~~~~a 138 (226) T 3he2_A 118 AIGAGLQLAMQCDLRVVAPDA 138 (226) T ss_dssp EETHHHHHHHHSSEEEECTTC T ss_pred EEHHHHHHHHHCCEEEECCCC T ss_conf 654779999853644410023 No 93 >>2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* (A:1-211) Probab=82.13 E-value=3.7 Score=20.99 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=49.2 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----------------HHHHHC--CHHHHHHHHHHCCCEEE Q ss_conf 111036799999999741003576777589995168884----------------442200--76999999974890488 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----------------EDLWHF--NDEMIVRAIANSSIPII 244 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----------------eDL~~F--N~e~laraI~~~~iPVi 244 (529) ...-..++..+++.+.... .+-+||+.-|||-. +.++.| .-..+.+++..||.||| T Consensus 37 ~~~~~~~l~~~l~~~~~d~------~v~~vVl~g~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~I 110 (211) T 2iex_A 37 RPKTVNEMIDAFTKARDDS------NIGVIILTGAGGKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVI 110 (211) T ss_dssp CHHHHHHHHHHHHHHHHCT------TCCEEEEEESSSSEEECCBC---------------CCCTHHHHHHHHHHSSSCEE T ss_pred CHHHHHHHHHHHHHHHHCC------CCCEEEECCCCCHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 9999999999999997486------6652442268850110565787530346402344566531134667764068489 Q ss_pred EEECCCCCC--HHHHHHHCCCCCCCHH Q ss_conf 520577752--5898864123777214 Q gi|254780791|r 245 SAIGHETDW--TLADYAADLRAPTPTG 269 (529) Q Consensus 245 sgIGHE~D~--Tl~D~VAD~Ra~TPTa 269 (529) ++|---.=- .-.=+.+|.|..++.+ T Consensus 111 a~v~G~a~ggG~~lal~~D~~ia~~~a 137 (211) T 2iex_A 111 AMVAGYAIGGGHVLHVVCDLTIAADNA 137 (211) T ss_dssp EEECSEEETHHHHHHHHSSEEEEETTC T ss_pred EEECCEECCCCCCHHHCCCCCEECCCC T ss_conf 997663225412012235513554898 No 94 >>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} (A:1-236) Probab=82.05 E-value=3.7 Score=20.97 Aligned_cols=83 Identities=24% Similarity=0.461 Sum_probs=47.0 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC------CCCHHHH------------HHCCH--HHHHHHHHHCCC Q ss_conf 111103679999999974100357677758999516------8884442------------20076--999999974890 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG------GGSIEDL------------WHFND--EMIVRAIANSSI 241 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG------GGS~eDL------------~~FN~--e~laraI~~~~i 241 (529) -...-..++.++++.+..... +-+||+.-| ||....+ +.|.+ ..+.+.+..||. T Consensus 41 l~~~~~~~l~~~l~~~~~d~~------~~~vi~~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 114 (236) T 3g64_A 41 LTFEAYADLRDLLAELSRRRA------VRALVLAGEGRGFCSGGDVDEIIGATLSXDTARLLDFNRXTGQVVRAVRECPF 114 (236) T ss_dssp BCHHHHHHHHHHHHHHHHTTC------CSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSS T ss_pred CCHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHCCCC T ss_conf 899999999999999973999------43999852554432011066642012221210022222320001566533798 Q ss_pred EEEEEE-CCCCC-CHHHHHHHCCCCCCCHHH Q ss_conf 488520-57775-258988641237772145 Q gi|254780791|r 242 PIISAI-GHETD-WTLADYAADLRAPTPTGA 270 (529) Q Consensus 242 PVisgI-GHE~D-~Tl~D~VAD~Ra~TPTaA 270 (529) |||++| ||-.= =.-.=+.+|.|..|+++. T Consensus 115 p~Iaav~G~a~GgG~~l~l~~D~~ia~~~a~ 145 (236) T 3g64_A 115 PVIAALHGVAAGAGAVLALAADFRVADPSTR 145 (236) T ss_dssp CEEEEECSEEETHHHHHHHHSSEEEECTTCE T ss_pred EEEEEECCEEHHCCCHHHHCCCCCCCCCCCC T ss_conf 2999984746212349774511133340010 No 95 >>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} (A:1-221) Probab=81.99 E-value=2.5 Score=22.52 Aligned_cols=77 Identities=25% Similarity=0.257 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------------HHHHHCC--HHHHHHHHHHCCCEEEEEE-CC Q ss_conf 36799999999741003576777589995168884--------------4422007--6999999974890488520-57 Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------------EDLWHFN--DEMIVRAIANSSIPIISAI-GH 249 (529) Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------------eDL~~FN--~e~laraI~~~~iPVisgI-GH 249 (529) ..++..++..+... +.+.+||+.-+|+.. ++.+.|. -..+..++..+|.|||++| || T Consensus 33 ~~~l~~~l~~~~~~------~~~~~vv~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~Iaav~G~ 106 (221) T 1ef8_A 33 IDDLMQALSDLNRP------EIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGS 106 (221) T ss_dssp HHHHHHHHHHTCST------TCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSE T ss_pred HHHHHHHHHHHCCC------CCEEEEEECCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCE T ss_conf 99999999986179------976999988888860547978353355662167799999999999997899999997681 Q ss_pred CCC-CHHHHHHHCCCCCCCHH Q ss_conf 775-25898864123777214 Q gi|254780791|r 250 ETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 250 E~D-~Tl~D~VAD~Ra~TPTa 269 (529) =.- -.-.-+.+|.|..|+.+ T Consensus 107 a~ggG~~lala~D~~ia~~~a 127 (221) T 1ef8_A 107 VWGGAFEMIMSSDLIIAASTS 127 (221) T ss_dssp EETHHHHHHHHSSEEEEETTC T ss_pred EEHHHHHHHHCCCEEEECCCC T ss_conf 222256467425568873776 No 96 >>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae} (A:) Probab=81.90 E-value=2.9 Score=21.98 Aligned_cols=80 Identities=14% Similarity=0.234 Sum_probs=51.4 Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC--------CEEEEEEEC-CCCCCCCCCCCCCCEEEEEE Q ss_conf 0171899999705---43568886279--998------7489--------479999973-52105866814598899999 Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH--------SRIDAIIWK-GTLNKIEFLPEEGIEFLVIG 90 (529) Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~--------a~i~~~~~~-~~~~~~~~~~~~G~~v~~~g 90 (529) .+..|-+.|-|.+ ++ ...+|..| |+| +|.+ .-..|++|. ..+..+.-.++.|+.|.|.| T Consensus 22 ~mN~v~l~G~l~~dpe~r-~t~~G~~~~~f~la~~~~~~~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~l~KG~~V~v~G 100 (169) T 3lgj_A 22 MLNKVMLIGYLGDDPESK-TMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169) T ss_dssp CEEEEEEEEEESSCCEEE-ECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE T ss_pred EEEEEEEEEEECCCCEEE-ECCCCCEEEEEEEEEECCEECCCCCEECCCCCEEEEEEECCHHHHHHHHHCCCCCEEEEEE T ss_conf 015899999916897799-8799987999999983333136776352432189998635068999998668999899999 Q ss_pred EEEE--EC-----CCCEEEEEEEEEEEC Q ss_conf 9667--52-----884379999971016 Q gi|254780791|r 91 KITT--FP-----GSSKYQIIIESLIPS 111 (529) Q Consensus 91 ~~~~--y~-----~~g~~ql~v~~i~~~ 111 (529) ++.. |. .+..+.+.+++|... T Consensus 101 ~l~~~~~~~kdG~~~~~~~i~a~~i~~l 128 (169) T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGE 128 (169) T ss_dssp EEEEECC--------CEEEEEECTTCCE T ss_pred EEECCEEECCCCCEEEEEEEEEEECCCC T ss_conf 9853417999997899999999823571 No 97 >>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} (A:) Probab=81.60 E-value=3.8 Score=20.85 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=56.7 Q ss_pred CCCCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC-------------CEEEEEEECCC-CCCCCCCCCCCCE Q ss_conf 0171899999705---43568886--2799987------489-------------47999997352-1058668145988 Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH-------------SRIDAIIWKGT-LNKIEFLPEEGIE 85 (529) Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~-------------a~i~~~~~~~~-~~~~~~~~~~G~~ 85 (529) .+.+|-+.|-|.. ++. ..+| .+-|+|. |.+ .-++|++|... +..+.-.++-|+. T Consensus 13 ~mN~v~l~G~l~~dpel~~-~~~g~~~~~f~ia~~~~~~~~~g~~~~~~~~~~~t~~~~vv~~g~~~a~~~~~~l~kG~~ 91 (132) T 3ull_A 13 SLNRVHLLGRVGQDPVLRQ-VEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSR 91 (132) T ss_dssp CEEEEEEEEEECSCCEEEC-CTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTTCE T ss_pred CCEEEEEEEECCCCCEEEE-CCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEEEHHHHHHHHHCCCCCE T ss_conf 8239999998887988998-699987999999844530166664112540044340986454740565434652447889 Q ss_pred EEEEEEEEE--EC-C----CCEEEEEEEEEEECCC Q ss_conf 999999667--52-8----8437999997101680 Q gi|254780791|r 86 FLVIGKITT--FP-G----SSKYQIIIESLIPSGS 113 (529) Q Consensus 86 v~~~g~~~~--y~-~----~g~~ql~v~~i~~~g~ 113 (529) |.|.|++.. |. + +.++.+.++.|.+.+- T Consensus 92 v~V~G~l~~~~~~~~dG~~~~~~~i~a~~i~~l~~ 126 (132) T 3ull_A 92 IYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSD 126 (132) T ss_dssp EEEEEEEECCCEESSSSEECCCEEEEEEEEECC-- T ss_pred EEEEEEECCCEEECCCCCEEEEEEEEEEEEEECCC T ss_conf 99993882311098999899999999969998889 No 98 >>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} (A:1-238) Probab=81.58 E-value=1.8 Score=23.79 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=48.2 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-------HHHHHHCCH--------HHHHHHHHHCCCEEEEE Q ss_conf 111103679999999974100357677758999516888-------444220076--------99999997489048852 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-------IEDLWHFND--------EMIVRAIANSSIPIISA 246 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-------~eDL~~FN~--------e~laraI~~~~iPVisg 246 (529) .....-.++..+++.+.... .+- +||..|||. +..++..+. ..+.+.+..||.|+|++ T Consensus 31 l~~~~~~~L~~~l~~~~~d~------~~~-vvvl~~~~~~F~~g~dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~ 103 (238) T 1mj3_A 31 LCNGLIEELNQALETFEEDP------AVG-AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAA 103 (238) T ss_dssp BCHHHHHHHHHHHHHHHHCT------TCC-EEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEE T ss_pred CCHHHHHHHHHHHHHHHHCC------CCE-EEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 99999999999999997689------924-99998799961078765653234324567789999998852699968999 Q ss_pred E-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 0-577752-5898864123777214 Q gi|254780791|r 247 I-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 247 I-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) | ||=.-- ...=+.+|.|..|+.+ T Consensus 104 v~G~a~GgG~~lala~D~~i~~~~~ 128 (238) T 1mj3_A 104 VNGYALGGGCELAMMCDIIYAGEKA 128 (238) T ss_dssp ECSEEETHHHHHHHHSSEEEEETTC T ss_pred ECCEEEHHHHHHHHHCCEEEECCCC T ss_conf 8884528989999978999975998 No 99 >>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} (A:1-209) Probab=81.23 E-value=3.9 Score=20.75 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=46.6 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------------------HHHHHCCH--HHHHHHHHHC Q ss_conf 1111036799999999741003576777589995168884--------------------44220076--9999999748 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------------------EDLWHFND--EMIVRAIANS 239 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------------------eDL~~FN~--e~laraI~~~ 239 (529) -......++..+++.+.... .+-+||+.-||+.+ .....|++ ..+.+++..| T Consensus 30 ~~~~~~~~l~~~l~~~~~d~------~v~~vv~~~~~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (209) T 3l3s_A 30 LSRAXIAALHDALRRAXGDD------HVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALXLDLAHC 103 (209) T ss_dssp CCHHHHHHHHHHHHHHHTCT------TCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999996489------966999978999858561202124444563100136788999999999999866 Q ss_pred CCEEEEEE-CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf 90488520-57775-25898864123777214 Q gi|254780791|r 240 SIPIISAI-GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 240 ~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) |.|||.+| ||=.- =.-.=+.+|.|..++.+ T Consensus 104 ~kp~Iaav~G~a~GgG~~lalacD~~ia~~~~ 135 (209) T 3l3s_A 104 PKPTIALVEGIATAAGLQLXAACDLAYASPAA 135 (209) T ss_dssp SSCEEEEESSEEETHHHHHHHHSSEEEECTTC T ss_pred CCCEEEEECCCEECCCHHHHHCCCCCCHHHCC T ss_conf 88889972473235511223323311011026 No 100 >>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} (A:) Probab=81.11 E-value=4 Score=20.72 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=46.9 Q ss_pred CEEEEEEECCCCCC--CC-CC---EEEEEEECCC-----CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEE Q ss_conf 18999997054356--88-86---2799987489-----4799999735210586681459889999-996675288437 Q gi|254780791|r 34 HVCVRGEISGYRGI--HS-SG---HAYFSLKDNH-----SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKY 101 (529) Q Consensus 34 ~~~v~gEis~~~~~--~~-sG---H~Yf~lkd~~-----a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ 101 (529) .|-|.|-|..+... .+ +| ++-|+|+|.. -.|.|.+|+.....|+.-...||=|+++ .+|..|. |.. T Consensus 44 ~VnvigVV~d~~~p~~s~~gg~d~~~tl~I~D~S~~~~~~gl~v~iF~~~~~~LP~v~~~GDIIlL~~vki~~~~--g~~ 121 (187) T 1qzg_A 44 IVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYR--DRT 121 (187) T ss_dssp EEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEET--TEE T ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEEC--CEE T ss_conf 888999991036871268899877999999758877878877999989996788997888989999888999987--927 Q ss_pred EEEE Q ss_conf 9999 Q gi|254780791|r 102 QIII 105 (529) Q Consensus 102 ql~v 105 (529) +++. T Consensus 122 ~~~~ 125 (187) T 1qzg_A 122 QGLS 125 (187) T ss_dssp EEEE T ss_pred EEEE T ss_conf 8996 No 101 >>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:1-103,A:205-228) Probab=80.46 E-value=1.8 Score=23.69 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=57.7 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCC----HHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 6528999847842589999998630597589997-----21001111----03679999999974100357677758999 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIF-----PVKVQGDE----CPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~-----p~~vQG~~----a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529) -+-||-||...++.++.+-+.....-. .++..+ |..+.+.. |+..++.++..+.. ..||.+|| T Consensus 10 ~mmRIlvINPNss~~~Te~i~~~a~P~-~~i~~~t~~~GP~~I~~~~d~~laa~~Vl~~~~~a~~-------~g~DAviI 81 (127) T 2eq5_A 10 GLIRVITLEDKEILNLHGRIIESAFPE-LKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFER-------EGVDAIII 81 (127) T ss_dssp EEEESSCCCCHHHHTHHHHHHHHHCTT-EEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHH-------TTCSEEEE T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------CCCCEEEE T ss_conf 899940368289999999888631899-5688725899986667831487858999999999987-------69999998 Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 51688844422007699999997489048852 Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisg 246 (529) + ||.|..|--+=-.+.+|||.+ T Consensus 82 a----------CFsDPGL~alRE~~~iPVVGi 103 (127) T 2eq5_A 82 S----------CAADPAVEKVRKLLSIPVIGA 103 (127) T ss_dssp C----------STTCTTHHHHHHHCSSCEEEH T ss_pred C----------CCCHHHHHHHHHHCCCCEECC T ss_conf 4----------787899999998669987523 No 102 >>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:1-78,A:169-196) Probab=80.11 E-value=4.2 Score=20.46 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=43.7 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) +-.+|++|++-.+ +.+....+...+.+++.++-..+ -.+++.+..+.. .+| +||.|||.+ T Consensus 3 m~~kI~~IAPY~~--L~~~~~~i~~e~~l~I~V~~g~l---------~egv~iAr~l~~-----g~D-VIISRGgTA--- 62 (106) T 2q5c_A 3 LSLKIALISQNEN--LLNLFPKLALEKNFIPITKTASL---------TRASKIAFGLQD-----EVD-AIISRGATS--- 62 (106) T ss_dssp CCCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEECCH---------HHHHHHHHHHTT-----TCS-EEEEEHHHH--- T ss_pred CCEEEEEECCCHH--HHHHHHHHHHHCCCEEEEEEEEH---------HHHHHHHHHHHC-----CCC-EEEECCHHH--- T ss_conf 7405999878089--99999999864384655543329---------999999998755-----988-999896489--- Q ss_pred HHHCCHHHHHHHHH-HCCCEEEE-EECCC Q ss_conf 22007699999997-48904885-20577 Q gi|254780791|r 224 LWHFNDEMIVRAIA-NSSIPIIS-AIGHE 250 (529) Q Consensus 224 L~~FN~e~laraI~-~~~iPVis-gIGHE 250 (529) ..|- ..++|||. .||.| T Consensus 63 ----------~lIr~~v~iPVVeI~i~~~ 81 (106) T 2q5c_A 63 ----------DYIKKSVSIPSISIKVGEE 81 (106) T ss_dssp ----------HHHHTTCSSCEEEECCCHH T ss_pred ----------HHHHHHCCCCEEEEECCHH T ss_conf ----------9999858998899707599 No 103 >>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} (A:) Probab=79.79 E-value=4.3 Score=20.38 Aligned_cols=77 Identities=21% Similarity=0.176 Sum_probs=42.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH----HHHHHCC--------------HHHHHHHHHHCCCEEEEE Q ss_conf 0367999999997410035767775899951688-84----4422007--------------699999997489048852 Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI----EDLWHFN--------------DEMIVRAIANSSIPIISA 246 (529) Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~----eDL~~FN--------------~e~laraI~~~~iPVisg 246 (529) -..++..++..+.... .+.+| |.+|+| .. -|++.++ -..+..++..||.|||++ T Consensus 33 ~~~~l~~~l~~~~~d~------~v~~v-Vl~g~g~~~f~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaa 105 (266) T 3fdu_A 33 LYLWIAKALDEADQNK------DVRVV-VLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIA 105 (266) T ss_dssp HHHHHHHHHHHHHHCT------TCCEE-EEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEE T ss_pred HHHHHHHHHHHHHHCC------CCEEE-EEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9999999999997589------94699-9978984251573166654200131034444325899999999779987998 Q ss_pred E-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 0-577752-5898864123777214 Q gi|254780791|r 247 I-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 247 I-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) | ||=.=- ..+=+.+|+|..|+++ T Consensus 106 v~G~a~GgG~~lal~~D~ria~~~a 130 (266) T 3fdu_A 106 VKGVAIGIGVTILLQADLVFADNTA 130 (266) T ss_dssp ECSEEETHHHHGGGGCSEEEECTTC T ss_pred ECCEEEECCCEEECCCCCCEECCCC T ss_conf 6384746452322152311114797 No 104 >>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} (A:) Probab=79.53 E-value=4.4 Score=20.32 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=45.6 Q ss_pred CCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE Q ss_conf 171899999705---43568886279--9987------48------9479999973521058668145988999999667 Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT 94 (529) Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~ 94 (529) +.+|-+.|-|.. ++. -.+|..| |+|. |. ..-++|++|...+.... .++.|+.|.|.|++.. T Consensus 2 mN~v~l~G~i~~dp~~r~-t~~g~~v~~~~la~~~~~~~~~~~~~~~~~~~v~~~g~~Ae~~~-~l~kG~~V~V~G~l~~ 79 (101) T 3en2_A 2 INRLQLVATLVEREVXRY-TPAGVPIVNCLLSYSGQAXEAQAARQVEFSIEALGAGKXASVLD-RIAPGTVLECVGFLAR 79 (101) T ss_dssp CCCEEEEEEEEEECCCEE-CTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHT-TSCTTCEEEEEEEEEE T ss_pred CEEEEEEEEECCCCCEEE-CCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEEECHHHHHHH-HCCCCCEEEEEEEEEC T ss_conf 209999999887874589-78873699999997457840553031146540999928966556-3189999999999825 Q ss_pred --EC-CCCEEE Q ss_conf --52-884379 Q gi|254780791|r 95 --FP-GSSKYQ 102 (529) Q Consensus 95 --y~-~~g~~q 102 (529) |. +.|.+. T Consensus 80 ~~~~~~~g~~~ 90 (101) T 3en2_A 80 KHRSSKALVFH 90 (101) T ss_dssp CC----CEEEE T ss_pred CCCCCCCEEEE T ss_conf 78658836999 No 105 >>1kq3_A Glycerol dehydrogenase; zinc, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.50A {Thermotoga maritima} (A:20-169) Probab=79.49 E-value=0.74 Score=27.24 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=53.3 Q ss_pred CCCCCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 3102652899984784258--99999986305975899972100111103679999999974100357677758999516 Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 140 ~lP~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) -+..+-+++-|||.++... +.|.+...-.+..+.+.+|+ +.....+.++.+.+... ++| .||+=| T Consensus 17 ~l~~~g~~~livtd~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~~d-~iiaiG 83 (150) T 1kq3_A 17 ELSRFGERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFG-----GECSDEEIERLSGLVEE-------ETD-VVVGIG 83 (150) T ss_dssp HHHTTCSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECC-----SSCBHHHHHHHHTTCCT-------TCC-EEEEEE T ss_pred HHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECC-----CCCCCHHHHHHHHHHHC-------CCC-EEEEEC T ss_conf 99966992899989765560599999998987698799638-----99993799999999853-------999-899947 Q ss_pred CCCHHHHHHCCHHHHHHHHHHCC------CEEEEEECCCC Q ss_conf 88844422007699999997489------04885205777 Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAIANSS------IPIISAIGHET 251 (529) Q Consensus 218 GGS~eDL~~FN~e~laraI~~~~------iPVisgIGHE~ 251 (529) |||.-|+ |++++... +|...|.|=|. T Consensus 84 GGsv~D~--------aK~~a~~~~~~~i~vPTt~~t~s~~ 115 (150) T 1kq3_A 84 GGKTLDT--------AKAVAYKLKKPVVIVPTIASTDAPC 115 (150) T ss_dssp SHHHHHH--------HHHHHHHTTCCEEEEESSCCCSCTT T ss_pred CCHHHHH--------HHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 9602110--------2688741478728854777768576 No 106 >>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} (A:) Probab=79.34 E-value=4.3 Score=20.41 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=53.6 Q ss_pred CCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECC--CCCCCCCCEEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCEE Q ss_conf 986229999999999974001--71899999705--435688862799987489-4799999735210586681459889 Q gi|254780791|r 12 HPEYSVSELSYHLKHIVESNL--SHVCVRGEISG--YRGIHSSGHAYFSLKDNH-SRIDAIIWKGTLNKIEFLPEEGIEF 86 (529) Q Consensus 12 ~~~~svs~l~~~i~~~l~~~~--~~~~v~gEis~--~~~~~~sGH~Yf~lkd~~-a~i~~~~~~~~~~~~~~~~~~G~~v 86 (529) .+.||+||+...-...-+... ..|.|.|-|-. +...+.+.++=|.|.|.. +.|.. .|.+ -++-..++|..| T Consensus 10 ~yf~tpse~~~~~~~~~~~~~~g~~vrv~G~V~~gSi~~~~~~~~~~F~itD~~~~~i~V-~Y~G---~~Pd~F~eg~~V 85 (136) T 1j6q_A 10 NLFYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILV-TYDD---LLPDLFREGQGI 85 (136) T ss_dssp CCEECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEE-EECS---CCTTSCCSSSEE T ss_pred EEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEECCCCCEEEEE-EECC---CCCHHHCCCCCE T ss_conf 599888997234464445556796899857997607885278726999986676208999-9789---796210279828 Q ss_pred EEEEEEEEECCCCEEEEEEEEE Q ss_conf 9999966752884379999971 Q gi|254780791|r 87 LVIGKITTFPGSSKYQIIIESL 108 (529) Q Consensus 87 ~~~g~~~~y~~~g~~ql~v~~i 108 (529) ++.|++ ...|. |.++.| T Consensus 86 Vv~G~~---~~~g~--F~A~~i 102 (136) T 1j6q_A 86 VAQGVL---GEDGK--LAATEV 102 (136) T ss_dssp EEEEEE---CSTTS--EEEEEE T ss_pred EEEEEE---CCCCE--EEEEEE T ss_conf 999997---88986--999699 No 107 >>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} (A:1-244) Probab=79.30 E-value=4.5 Score=20.26 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=45.1 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC------HHHHHHCC------------HHHHHHHHHHCCCEEEEE Q ss_conf 103679999999974100357677758999516888------44422007------------699999997489048852 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS------IEDLWHFN------------DEMIVRAIANSSIPIISA 246 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS------~eDL~~FN------------~e~laraI~~~~iPVisg 246 (529) .-..+|..++..+.... .+-+|||.=.|+. +.+++... -..+.+.+..||.|+|++ T Consensus 37 ~~~~~l~~al~~~~~d~------~~~~vVl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~kp~Iaa 110 (244) T 1wz8_A 37 ALHRGLARVWRDLEAVE------GVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA 110 (244) T ss_dssp HHHHHHHHHHHHHTTCT------TCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999999999996299------974999964554211122201233101233221101356667787764202311320 Q ss_pred E-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 0-577752-5898864123777214 Q gi|254780791|r 247 I-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 247 I-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) | ||=.-- ...=+.+|+|..++.+ T Consensus 111 v~G~a~ggG~~l~l~~D~~ia~~~a 135 (244) T 1wz8_A 111 VEKVAVGAGLALALAADIAVVGKGT 135 (244) T ss_dssp ECSEEETHHHHHHHHSSEEEEETTC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 3433566543421131111223334 No 108 >>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:1-108,A:251-276) Probab=78.69 E-value=4.6 Score=20.12 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=60.3 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) +.+||||.+. +..-+..+++.+.+ +..+.+.++++.-..+ .-.++++.+-.. ++|.|||+-.+.+ T Consensus 2 s~~Igvi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~d~~----~e~~~i~~l~~~-------~vDGIIi~~~~~~ 70 (134) T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQE----NQIKAVRSFVAQ-------GVDAIFIAPVVAT 70 (134) T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHH----HHHHHHHHHHHH-------TCSEEEECCSSSS T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH----HHHHHHHHHHHC-------CCCEEEEECCCCC T ss_conf 84999996899899999999999999998599899995899999----999999999975-------9999998325654 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 444220076999999974890488520577752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ....+++.+.+..||||.==-+-.+....-++ T Consensus 71 -------~~~~~i~~~~~~~iPVV~id~~~~~~~~~~vv 102 (134) T 2vk2_A 71 -------GWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYM 102 (134) T ss_dssp -------SCHHHHHHHHHTTCCEEEESSCCCCSCGGGSS T ss_pred -------CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCC T ss_conf -------11688999986199757744544555566652 No 109 >>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} (A:1-176,A:349-376) Probab=78.54 E-value=4.7 Score=20.08 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=50.1 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH--HCCCEEEEEEC------ Q ss_conf 7210011110367999999997410035767775899951688844422007699999997--48904885205------ Q gi|254780791|r 177 FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA--NSSIPIISAIG------ 248 (529) Q Consensus 177 ~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~--~~~iPVisgIG------ 248 (529) +.....+..-...+...+..+...-.. .+||+|++. -| -.+.+|-|++ .+.|||+-==| T Consensus 63 l~~~~~~~sl~~~~~~~i~~~~~~l~~---~~PD~VlV~------GD----t~~~lA~AlaA~~~~IPvaHieaGlrS~d 129 (204) T 1v4v_A 63 LDVXQERQALPDLAARILPQAARALKE---XGADYVLVH------GD----TLTTFAVAWAAFLEGIPVGHVEAGLRSGN 129 (204) T ss_dssp CCCCSSCCCHHHHHHHHHHHHHHHHHH---TTCSEEEEE------SS----CHHHHHHHHHHHHTTCCEEEETCCCCCSC T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEC------CC----CCCCHHHHHHHHHHHHHHHEECCCCCCCC T ss_conf 787898888999999999987766540---476523101------36----64311367889876344511103556666 Q ss_pred ------CCCCCHHHHHHHCCC-CCCCHHHH Q ss_conf ------777525898864123-77721456 Q gi|254780791|r 249 ------HETDWTLADYAADLR-APTPTGAA 271 (529) Q Consensus 249 ------HE~D~Tl~D~VAD~R-a~TPTaAA 271 (529) -|...-++|-+||+- +||+.++. T Consensus 130 ~~~~~pEE~~R~~is~lA~lHF~~t~~~~~ 159 (204) T 1v4v_A 130 LKEPFPEEANRRLTDVLTDLDFAPTPLAKA 159 (204) T ss_dssp TTSSTTHHHHHHHHHHHCSEEEESSHHHHH T ss_pred CCCCCHHHHHHHHHCCCCCEEEECCHHHHH T ss_conf 567734666554412344436522116677 No 110 >>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} (A:26-111) Probab=78.51 E-value=3.1 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=36.4 Q ss_pred CCEEEEECCCCCEECCHHHCCCCCEEEEEEECEE-EEEEEEECCC Q ss_conf 4619998489889577789299986999991109-9999950578 Q gi|254780791|r 460 RGYTSIQDTNNNFITQKRNLATKTRILINFFDGQ-ANAIVINKAP 503 (529) Q Consensus 460 RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~-v~a~V~~k~~ 503 (529) -|-.++-+++|.++++..-+...+.+.+.|.||+ ..++|....+ T Consensus 23 ~GsGfii~~~G~IlTn~Hvv~~~~~i~v~~~dg~~~~a~vv~~d~ 67 (86) T 1lcy_A 23 NGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDP 67 (86) T ss_dssp EEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEEEEEEEEEET T ss_pred CEEEEEEECCCEEEECHHHCCCCCEEEEEECCCCEEEEEEEEECC T ss_conf 389999959989998777706997799997699899999985663 No 111 >>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} (A:) Probab=78.02 E-value=4.8 Score=19.97 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=59.6 Q ss_pred CEEEEEECCC-------------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 2899984784-------------2589999998630---59758999721001111036799999999741003576777 Q gi|254780791|r 146 KIIAVITSPT-------------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 146 ~~i~vits~~-------------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) .+|-||-.|+ ..-+.|+...+++ ..++++..|-+---| +|+.+|..+.. .+ T Consensus 3 ~~ilvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG-----elid~i~~a~~--------~~ 69 (146) T 1h05_A 3 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEA-----QLLDWIHQAAD--------AA 69 (146) T ss_dssp CEEEEEECTTGGGTTTC------CCCHHHHHHHHHHHHHHTTCEEEEEECSCHH-----HHHHHHHHHHH--------HT T ss_pred CEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH-----HHHHHHHHHHC--------CC T ss_conf 789998288700058878863885699999999999999839748897537599-----99999998530--------46 Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 589995168884442200769999999748904885 Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) |.|||==|| |.+-...+..|+...++|+|- T Consensus 70 dgiIINpga------~ThtS~al~DAl~~~~~P~VE 99 (146) T 1h05_A 70 EPVILNAGG------LTHTSVALRDACAELSAPLIE 99 (146) T ss_dssp CCEEEECGG------GGGTCHHHHHHHHTCCSCEEE T ss_pred CCEEECCCH------HHHHHHHHHHHHHHCCCCEEE T ss_conf 726971521------222448999999854998899 No 112 >>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:1-161,A:294-339) Probab=77.92 E-value=4.8 Score=19.95 Aligned_cols=120 Identities=11% Similarity=0.115 Sum_probs=74.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCC-CEEEEEECCC-HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 9999999976540122610016310265-2899984784-2589999998630---597589997210011110367999 Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNPIPFIP-KIIAVITSPT-GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIAN 192 (529) Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~lP~~p-~~i~vits~~-~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ 192 (529) ...++..+-.++-||......+.+..-. ..||+|.... ..-+.+|++-+.. ...+.+.++++.... ..-.+ T Consensus 34 eTr~rV~~aa~elGY~pn~~ar~l~~~~s~~Igii~~~~~npf~~~ii~Gie~aa~~~g~~l~i~~~~~~~----~~e~~ 109 (207) T 3h5o_A 34 QLREKVXQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQXLIGNSHYDA----GQELQ 109 (207) T ss_dssp -----------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCH----HHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCH----HHHHH T ss_conf 99999999999978976977876510776189999544321369999999999999749979998503541----67888 Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE---CCCCCCHHHH Q ss_conf 9999974100357677758999516888444220076999999974890488520---5777525898 Q gi|254780791|r 193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI---GHETDWTLAD 257 (529) Q Consensus 193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI---GHE~D~Tl~D 257 (529) +++.+... ++|.||+.= ...++.+...+....||+|.-- ++..+...+| T Consensus 110 ~l~~l~~~-------~vdGiIi~~---------~~~~~~~~~~l~~~~IPvVl~d~~~~~~~~~V~~D 161 (207) T 3h5o_A 110 LLRAYLQH-------RPDGVLITG---------LSHAEPFERILSQHALPVVYXXDLADDGRCCVGFS 161 (207) T ss_dssp HHHHHHTT-------CCSEEEEEC---------SCCCTTHHHHHHHTTCCEEEEESCCSSSCCEEECC T ss_pred HHHHHHHC-------CCCEEEEEE---------ECCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEH T ss_conf 89999855-------764279984---------03320134444201333200124445533034205 No 113 >>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metabolism, lipid metabolism, lyase; 1.80A {Mycobacterium tuberculosis} (A:) Probab=77.89 E-value=4.7 Score=20.05 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=49.6 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CHHHH--------HHCCHHHHHHHHHHCCCEEEEE Q ss_conf 11110367999999997410035767775899951688-------84442--------2007699999997489048852 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-------SIEDL--------WHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-------S~eDL--------~~FN~e~laraI~~~~iPVisg 246 (529) -......++..++..+..... +- +||.+|.| .+..+ |.-.-..+.+.+..||.|||++ T Consensus 49 l~~~~~~~l~~~l~~~~~d~~------v~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaa 121 (278) T 3h81_A 49 LNSQVMNEVTSAATELDDDPD------IG-AIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAA 121 (278) T ss_dssp BCHHHHHHHHHHHHHHHTCTT------CC-EEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCC------CC-EEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 999999999999998524987------01-45421566432368877886411121213678877777752389989999 Q ss_pred E-CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf 0-57775-25898864123777214 Q gi|254780791|r 247 I-GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 247 I-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) | ||-.= =.-.=+.+|.|..|+.+ T Consensus 122 v~G~a~GgG~~lalacD~ri~~~~a 146 (278) T 3h81_A 122 VAGYALGGGCELAMMCDVLIAADTA 146 (278) T ss_dssp ECBEEETHHHHHHHHSSEEEEETTC T ss_pred ECCCCHHHHHHHHHHCCEEEEECCC T ss_conf 8260618999999978999982998 No 114 >>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:1-106,A:224-276) Probab=77.63 E-value=4.9 Score=19.88 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=63.4 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -+.||||.+. +..-+..+++-+.. .+++.+.++++ .+.......+++.+... ++|.||+. T Consensus 7 s~~Igvi~~~~~~~~~~~i~~gi~~~~~~~gy~l~i~~~----~~~~~~~~~~l~~l~~~-------~vdGiIi~----- 70 (159) T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA----NADIEREKTLLRAIGSR-------GFDGLILQ----- 70 (159) T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC----TTCHHHHHHHHHHHHTT-------TCSEEEEE----- T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHC-------CCCCCCCC----- T ss_conf 998999928998989999999999999986999999948----99989999999999953-------88853124----- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 444220076999999974890488520577752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ++++....+.+.+..+|||.- |...+..-+++| T Consensus 71 -----~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V 103 (159) T 3jy6_A 71 -----SFSNPQTVQEILHQQMPVVSV-DREMDACPWPQV 103 (159) T ss_dssp -----SSCCHHHHHHHHTTSSCEEEE-SCCCTTCSSCEE T ss_pred -----CCCHHHHHHHHHHCCCCEECC-CCCCCCCCCCCC T ss_conf -----620047788888628730002-345455778742 No 115 >>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* (A:) Probab=77.44 E-value=5 Score=19.84 Aligned_cols=36 Identities=31% Similarity=0.560 Sum_probs=30.5 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 310265289998478425899999986305975899 Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI 175 (529) Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~ 175 (529) ..|.-|.||+++.|..++++.++++.+..+.+.++. T Consensus 7 ~~~~~pmki~~~gs~~~~~l~~ll~~~~~~~~~~i~ 42 (215) T 3da8_A 7 VPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVV 42 (215) T ss_dssp ECCCSSEEEEEEESSCCHHHHHHHHHSSTTCSEEEE T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE T ss_conf 899998889999837815599999963879997799 No 116 >>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} (A:1-249) Probab=77.33 E-value=5 Score=19.82 Aligned_cols=81 Identities=19% Similarity=0.202 Sum_probs=44.3 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHHHHC------------------------CHHHHH Q ss_conf 11110367999999997410035767775899951688-84---442200------------------------769999 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDLWHF------------------------NDEMIV 233 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL~~F------------------------N~e~la 233 (529) -......++..+|+.++... .+-+|| .+|+| +. -|+-.+ +-..+. T Consensus 28 l~~~~~~~l~~al~~~~~d~------~v~~vi-~tg~g~~f~sG~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (249) T 1dci_A 28 MNRAFWRELVECFQKISKDS------DCRAVV-VSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTF 100 (249) T ss_dssp BCHHHHHHHHHHHHHHHTCT------TCCEEE-EEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHCC------CCEEEE-EECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999999999997399------966999-96346653468148987413134532111220123223444445666 Q ss_pred HHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 99974890488520-577752-5898864123777214 Q gi|254780791|r 234 RAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 234 raI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) +.+.+||.|+|.+| ||-.-- ...=+.+|+|..|+.+ T Consensus 101 ~~l~~~pkp~Iaav~G~a~GgG~~la~~cD~ria~~~a 138 (249) T 1dci_A 101 TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138 (249) T ss_dssp HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTC T ss_pred HHHHCCCCEEEEEECCEEEHHHHHHHHHCCEEECCCCC T ss_conf 55531597399998277462528887514760003676 No 117 >>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:1-112,A:246-289) Probab=77.19 E-value=3.8 Score=20.85 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=57.2 Q ss_pred CCCEEEEEECCCH-HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 6528999847842-589999998630---597589997210011110367999999997410035767775899951688 Q gi|254780791|r 144 IPKIIAVITSPTG-AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 144 ~p~~i~vits~~~-a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) -+.+||||.+..+ --+..++.-+.+ .+++++.++.+.-+++.. .-...|+.+-.. ++|.|||.=... T Consensus 6 ~s~~Igvi~~~~~~pf~~~i~~gi~~~a~~~g~~v~~~~~~s~~d~~--~q~~~i~~l~~~-------~vdgiIi~~~~~ 76 (156) T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYL--VQNELIEEAIKR-------KPDVILLAAADY 76 (156) T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHH--HHHHHHHHHHHT-------CCSEEEECCSCT T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH--HHHHHHHHHHHC-------CCCEEEEECCCC T ss_conf 38999982589999899999999999999819989999679988999--999999999976-------999999978720 Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 8444220076999999974890488520577752 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529) + ....+++.+.+-.||||+==....+. T Consensus 77 ~-------~~~~~i~~l~~~gIPVV~id~~~~~~ 103 (156) T 3brs_A 77 E-------KTYDAAKEIKDAGIKLIVIDSGMKQD 103 (156) T ss_dssp T-------TTHHHHTTTGGGTCEEEEESSCCSSC T ss_pred H-------HHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 1-------02899998861387420013433468 No 118 >>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} (A:1-207) Probab=76.64 E-value=5.2 Score=19.67 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=45.6 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-----HHHHHHC-------------CHHHHHHHHHHCCCEEE Q ss_conf 11103679999999974100357677758999516888-----4442200-------------76999999974890488 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-----IEDLWHF-------------NDEMIVRAIANSSIPII 244 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-----~eDL~~F-------------N~e~laraI~~~~iPVi 244 (529) ...-..++..+++.+....+ +- +||.+|+|. --|+..+ .-..+.+.+..||.||| T Consensus 34 ~~~~~~~l~~~l~~~~~d~~------v~-~vii~g~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~I 106 (207) T 3kqf_A 34 SLALLEELQNILTQINEEAN------TR-VVILTGAGEKAFCAGADLKERAGXNEEQVRHAVSXIRTTXEXVEQLPQPVI 106 (207) T ss_dssp CHHHHHHHHHHHHHHHTCTT------CC-EEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEE T ss_pred CHHHHHHHHHHHHHHHHCCC------CC-EEEEECCCCCEEECCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCEEE T ss_conf 99999999999999974999------67-899963878746435301233102112222233223230110104665499 Q ss_pred EEE-CCCCCCH-HHHHHHCCCCCCCHH Q ss_conf 520-5777525-898864123777214 Q gi|254780791|r 245 SAI-GHETDWT-LADYAADLRAPTPTG 269 (529) Q Consensus 245 sgI-GHE~D~T-l~D~VAD~Ra~TPTa 269 (529) ++| ||=.--- ..=+.+|.|..++.+ T Consensus 107 a~v~G~a~GgG~~lal~~D~~ia~~~a 133 (207) T 3kqf_A 107 AAINGIALGGGTELSLACDFRIAAESA 133 (207) T ss_dssp EEECSEEETHHHHHHHHSSEEEEETTC T ss_pred EEEHHHCCCHHHHHHHCCCEEEECCCC T ss_conf 974400105778876242578852556 No 119 >>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:58-160,A:293-340) Probab=76.20 E-value=5.3 Score=19.58 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=57.9 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) +.||||.+. +..-+..++.-+.+ ..++.+.++++ ++.......+++.+... ++|.|||.-... T Consensus 2 ~~Igvii~~~~~~f~~~l~~gi~~~a~~~g~~l~i~~~----~~~~e~~~~~i~~l~~~-------~vDGIIi~~~~~-- 68 (151) T 1qpz_A 2 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA----WNNLEKQRAYLSMMAQK-------RVDGLLVMCSEY-- 68 (151) T ss_dssp SEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHT-------TCSEEEECCSCC-- T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHHHHHHHHC-------CCCEEEEECCCC-- T ss_conf 57999954666740189999999998748958999415----54448999999999854-------887489814678-- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 4422007699999997489048852057 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGH 249 (529) ++..+.+.+.+..||||.-=.. T Consensus 69 ------~~~~~~~~l~~~~IPvV~id~~ 90 (151) T 1qpz_A 69 ------PEPLLAMLEEYRHIPMVVMDWG 90 (151) T ss_dssp ------CHHHHHHHHTTTTSCEEEEEES T ss_pred ------CHHHHHHHHHHCCCCEEEECCC T ss_conf ------7277888876148877983367 No 120 >>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase, structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} (A:) Probab=76.05 E-value=4 Score=20.67 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=52.8 Q ss_pred HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH Q ss_conf 89999998630597-58999721001111036799999999741003576777589995168884442200769999999 Q gi|254780791|r 158 VIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 (529) Q Consensus 158 ~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI 236 (529) .++.+...+.+.++ ..++||.+.+.|+.-+.| .+|+.|+..++-|..+++. ++..+ T Consensus 13 ~~~~i~~~l~~~~~i~~v~LFGS~arg~~~~~S------------------DiDi~V~~~~~~~~~~~~~-----~~~~l 69 (114) T 1no5_A 13 ELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYS------------------DLDLAIISEEPLDFLARDR-----LKEAF 69 (114) T ss_dssp HHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTC------------------CEEEEEECSSCCCHHHHHH-----HHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC------------------CCCEEEEECCCCCHHHHHH-----HHHHH T ss_conf 999999999972899689998988889868899------------------8678998389999999999-----99999 Q ss_pred HHCC--CEEEEEECCCCCCHHHHHH Q ss_conf 7489--0488520577752589886 Q gi|254780791|r 237 ANSS--IPIISAIGHETDWTLADYA 259 (529) Q Consensus 237 ~~~~--iPVisgIGHE~D~Tl~D~V 259 (529) .... .+|---+=++....+...| T Consensus 70 ~~~~~~~~vdvv~~~~~~~~~~~~i 94 (114) T 1no5_A 70 SESDLPWRVDLLDWATTSEDFREII 94 (114) T ss_dssp HHSCCSSCEEEEEGGGSCHHHHHHH T ss_pred HHCCCCCEEEEEECCCCCHHHHHHH T ss_conf 8558998499988201999999999 No 121 >>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} (A:) Probab=75.93 E-value=5.4 Score=19.52 Aligned_cols=78 Identities=18% Similarity=0.029 Sum_probs=41.6 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CH-------------HHHHHCCH--HHHHHHHHHCCCE Q ss_conf 10367999999997410035767775899951688-------84-------------44220076--9999999748904 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-------SI-------------EDLWHFND--EMIVRAIANSSIP 242 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-------S~-------------eDL~~FN~--e~laraI~~~~iP 242 (529) .-..++..+++.+..... += +||.+|+| .. +..+.|.+ ..+...+..||.| T Consensus 31 ~~~~~l~~al~~~~~d~~------v~-~vi~~~~g~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~kp 103 (263) T 3lke_A 31 ELGTSLLEAIRAGNNETS------IH-SIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKV 103 (263) T ss_dssp HHHHHHHHHHHHHHHCSS------CC-EEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSE T ss_pred HHHHHHHHHHHHHHCCCC------CE-EEEEECCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999850999------57-99996189865368864001221001003567899999999999999848998 Q ss_pred EEEEE-CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf 88520-57775-25898864123777214 Q gi|254780791|r 243 IISAI-GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 243 VisgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) ||++| ||-.= =...=+.+|.|..|+.+ T Consensus 104 ~Iaav~G~a~GgG~~lal~~D~ri~~~~a 132 (263) T 3lke_A 104 TVALINGYAYGGGFNMMLACDRRIALRRA 132 (263) T ss_dssp EEEEECSEEETHHHHGGGGSSEEEEETTC T ss_pred EEEEECCEEECCCCHHHCCCCEEEECCCC T ss_conf 99998466712622211255567754567 No 122 >>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:1-109,A:242-289) Probab=75.72 E-value=5.4 Score=19.48 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=59.3 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ..+||||.+. ++.-+..++.-+.. ..++.+.++++. +.+.....+++.+... ++|.||+.-... T Consensus 7 s~~Igviip~~~~~f~~~~~~gi~~~a~~~g~~v~i~~~~----~~~~~~~~~i~~l~~~-------~vDGiIi~~~~~- 74 (157) T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW----NNLEKQRAYLSMMAQK-------RVDGLLVMCSEY- 74 (157) T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECT----TCHHHHHHHHHHHHHT-------TCSEEEEECSCC- T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCEEEECCCCC- T ss_conf 9979999599989899999999999999869999999689----9989999999998845-------876688426556- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 4442200769999999748904885205777 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHET 251 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~ 251 (529) +++.+........||||.-=.+.. T Consensus 75 -------~~~~~~~~l~~~~iPvV~id~~~~ 98 (157) T 1dbq_A 75 -------PEPLLAMLEEYRHIPMVVMDWGEA 98 (157) T ss_dssp -------CHHHHHHHHHTTTSCEEEEECSSC T ss_pred -------CHHHHHHHHHHCCCCEEEEEECCC T ss_conf -------505789998606996899850368 No 123 >>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} (A:) Probab=75.42 E-value=5.5 Score=19.42 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=24.7 Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 999999974890488520-577752-5898864123777214 Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) ..+..++..||.|||++| ||=.-- .-.=+.+|.|..++.+ T Consensus 102 ~~~~~~l~~~~kP~Iaav~G~a~GgG~~lala~D~ria~~~~ 143 (280) T 1pjh_A 102 VYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 143 (280) T ss_dssp HHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 999999996899989997673357864321120067774442 No 124 >>1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} (A:1-290) Probab=75.36 E-value=5.5 Score=19.41 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=26.1 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCC--CHHHHHHHCCCCCCCHH Q ss_conf 699999997489048852057775--25898864123777214 Q gi|254780791|r 229 DEMIVRAIANSSIPIISAIGHETD--WTLADYAADLRAPTPTG 269 (529) Q Consensus 229 ~e~laraI~~~~iPVisgIGHE~D--~Tl~D~VAD~Ra~TPTa 269 (529) -..+.+++..||.|||.+|---.= -...=+.+|.|..|+.+ T Consensus 136 ~~~~~~~l~~~~kP~Iaav~G~a~GgG~~l~l~cD~~i~~~~~ 178 (290) T 1q52_A 136 ILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY 178 (290) T ss_dssp HHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT T ss_pred HHHHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCCCCHHHHH T ss_conf 9999999984899889997675501115887631422022445 No 125 >>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* (A:77-193) Probab=75.32 E-value=5 Score=19.82 Aligned_cols=52 Identities=21% Similarity=0.430 Sum_probs=38.1 Q ss_pred CCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 842589999998630597--5899972100111103679999999974100357677758999516888 Q gi|254780791|r 154 PTGAVIRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 154 ~~~a~~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ++.+.+.+....-..++. -..+++|..+ ++|...++.+++ +.+-+++||||. T Consensus 42 ~~d~~~~~~~~~~~~~~~~~P~~vv~P~s~------~eV~~iv~~a~~---------~~ipv~~rggG~ 95 (117) T 2uuu_A 42 TFGKSLRDLIRVRIGQVKNAPDLIVLPHSH------EEVERLVQLAHK---------YNVVIIPMGGGS 95 (117) T ss_dssp TCCSSHHHHHHHHTTCCCCCCSEEECCCSH------HHHHHHHHHHHH---------HTCEEEEESSCC T ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCH------HHHHHHHHHHHH---------CCCCEEEECCCC T ss_conf 089987899998579878998589954999------999999999998---------799689848998 No 126 >>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} (A:) Probab=74.86 E-value=5.7 Score=19.31 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=46.7 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHH----------------HHCCHHHHHHHHHHCCC Q ss_conf 111103679999999974100357677758999516888-4---442----------------20076999999974890 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDL----------------WHFNDEMIVRAIANSSI 241 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL----------------~~FN~e~laraI~~~~i 241 (529) -+.....+|..+++.+.... .+-+|||.-+||. . -|+ +.-....+...|..||. T Consensus 30 l~~~~~~~l~~~l~~~~~d~------~~~~vvi~g~~~~~F~aG~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pk 103 (363) T 3bpt_A 30 LTLNXIRQIYPQLKKWEQDP------ETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYXLNNAVGSCQK 103 (363) T ss_dssp BCHHHHHHHHHHHHHHHHCT------TCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSS T ss_pred CCHHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCEECCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999998499------966999965899801478387877512243321210111122334666652488 Q ss_pred EEEEEE-------CCCCCCHHHHHHHCCCCCCCHH Q ss_conf 488520-------5777525898864123777214 Q gi|254780791|r 242 PIISAI-------GHETDWTLADYAADLRAPTPTG 269 (529) Q Consensus 242 PVisgI-------GHE~D~Tl~D~VAD~Ra~TPTa 269 (529) |||++| |.| +=+.+|.|..||++ T Consensus 104 PvIa~i~G~a~GGG~e-----lala~d~ria~~~a 133 (363) T 3bpt_A 104 PYVALIHGITXGGGVG-----LSVHGQFRVATEKC 133 (363) T ss_dssp CEEEEECSEEETHHHH-----TTTTSSEEEECTTC T ss_pred CEEEEECCCCEEECCC-----CCCCCHHHHHHCCC T ss_conf 6787757975010220-----01241023340024 No 127 >>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} (A:1-230) Probab=74.79 E-value=5.1 Score=19.72 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.2 Q ss_pred HHHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 6999999974890488520-577752-5898864123777214 Q gi|254780791|r 229 DEMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 229 ~e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) ...+.+.+..||.|||++| ||=.-- .-.=+.+|+|..++.+ T Consensus 115 ~~~~~~~~~~~~kpvIaav~G~a~GgG~~lala~D~~ia~~~a 157 (230) T 2vx2_A 115 CSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKS 157 (230) T ss_dssp HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEECCCC T ss_conf 5678888860775542674572131678887505623057887 No 128 >>3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Novosphingobium aromaticivorans DSM12444} (A:1-155,A:263-274) Probab=74.59 E-value=5.8 Score=19.26 Aligned_cols=103 Identities=14% Similarity=0.017 Sum_probs=53.0 Q ss_pred CEEEEEECCCHHHHHHH--HHHHH--HCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 28999847842589999--99863--05975899972100111--10367999999997410035767775899951688 Q gi|254780791|r 146 KIIAVITSPTGAVIRDI--LQRIS--CRFPLRVIIFPVKVQGD--ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 146 ~~i~vits~~~a~~~D~--~~~~~--~r~p~~~~~~p~~vQG~--~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) -+||||++.++.--... ..-+. +.|++++.+.+..-.+. -|...-.+|=+.-+.+ ..+.+|+|+-+|||= T Consensus 4 D~I~vvAPSs~~~~~~~~~~~ai~~Le~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dl~~a~----~d~~v~aI~~~rGGy 79 (167) T 3g23_A 4 RRIAICAPSTPFTREDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECA----NDDAFEAVWFVRGGY 79 (167) T ss_dssp EEEEEECSSSCCCHHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHH----TCTTCSEEEESCCSS T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHH----HCCCCCEEEECCCCC T ss_conf 1899982899998678889989999971991898884311015853799899999999986----499989999867655 Q ss_pred CHHHHHH-CCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 8444220-076999999974890488520577752589886 Q gi|254780791|r 220 SIEDLWH-FNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 220 S~eDL~~-FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ..-.|-+ +.+.++. .+.|-|+ ||+ .|+|.+=+. T Consensus 80 ga~rlLp~l~d~~~~---~~~PK~~---iGy-SDiT~L~~a 113 (167) T 3g23_A 80 GANRIAEDALARLGR---AASAKQY---LGY-SDAGTLLAA 113 (167) T ss_dssp CTHHHHHHHHTTCCG---GGGGCEE---EEC-GGGHHHHHH T ss_pred CHHHHHHHHCHHHHH---HCCCCEE---EEE-CHHHHHHHH T ss_conf 787877665666687---5499879---998-678999999 No 129 >>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:275-457) Probab=74.46 E-value=5.8 Score=19.24 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=69.9 Q ss_pred HHCCCCCCCCCCCCCC-CEEEEEECCCHHHH--HHHHHH---------------HHHCCC-EEEEEEECCCCCCCHHHHH Q ss_conf 0122610016310265-28999847842589--999998---------------630597-5899972100111103679 Q gi|254780791|r 130 EGLFSDQHKNPIPFIP-KIIAVITSPTGAVI--RDILQR---------------ISCRFP-LRVIIFPVKVQGDECPKEI 190 (529) Q Consensus 130 eGlfd~~~k~~lP~~p-~~i~vits~~~a~~--~D~~~~---------------~~~r~p-~~~~~~p~~vQG~~a~~~i 190 (529) |.+||...-...|... .+|||||...|.+. .|-+.. |+.-.| +--.--|.-+=|...+.-. T Consensus 3 ~el~d~~~~l~~~~p~g~riavis~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lP~~~~~~NPiD~~~~a~~~~~ 82 (183) T 2csu_A 3 DEXLSXARAFSQPLPRGNKVAIXTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPXAAVKNPVDXIASARGEDY 82 (183) T ss_dssp HHHHHHHTTTTSCCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHH T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHH T ss_conf 66999999966889999816999678348899999999869987778888998787413412302576556788897999 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCCC-HHHHHHCCHHHHHHHHHH--CCCEEEEEE--CCCCCCHHH Q ss_conf 999999974100357677758999516888-444220076999999974--890488520--577752589 Q gi|254780791|r 191 ANAILQLNTLKEGRTCPRPDIIILARGGGS-IEDLWHFNDEMIVRAIAN--SSIPIISAI--GHETDWTLA 256 (529) Q Consensus 191 ~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~eDL~~FN~e~laraI~~--~~iPVisgI--GHE~D~Tl~ 256 (529) ..+|+.+.... .+|+|+++=-.|+ ....|...-+.++.+... ++.||+... |+..|...- T Consensus 83 ~~~l~~~~~dp------~vd~v~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~kPi~~~~~g~~~~~~~~~ 147 (183) T 2csu_A 83 YRTAKLLLQDP------NVDXLIAICVVPTFAGXTLTEHAEGIIRAVKEVNNEKPVLAXFXAGYVSEKAKE 147 (183) T ss_dssp HHHHHHHHHST------TCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHH T ss_pred HHHHHHHHCCC------CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH T ss_conf 99999997399------989899997477656777269999999999984899978999899865199999 No 130 >>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D (A:) Probab=74.30 E-value=5.8 Score=19.21 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=45.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH------HHHHH-----------CCHHHHHHHHHHCCCEE Q ss_conf 01111036799999999741003576777589995168884------44220-----------07699999997489048 Q gi|254780791|r 181 VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI------EDLWH-----------FNDEMIVRAIANSSIPI 243 (529) Q Consensus 181 vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~------eDL~~-----------FN~e~laraI~~~~iPV 243 (529) .-......++..+++.+....+ +-+|||.-+|+.. .++.. -.-..+.+.+..||.|| T Consensus 47 al~~~~~~~l~~al~~~~~~~~------v~~vvltg~g~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~p~ 120 (263) T 2j5g_A 47 VFTGKTHREFPDAFYDISRDRD------NRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPV 120 (263) T ss_dssp EECHHHHHHHHHHHHHHHHCTT------CCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCE T ss_pred CCCHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCHHH T ss_conf 9899999999999999972999------6199986245431111100001333233322012221002222023466034 Q ss_pred EEEECCCCC--CHHHHHHHCCCCCCCHH Q ss_conf 852057775--25898864123777214 Q gi|254780791|r 244 ISAIGHETD--WTLADYAADLRAPTPTG 269 (529) Q Consensus 244 isgIGHE~D--~Tl~D~VAD~Ra~TPTa 269 (529) |.+|..-.= =.-.=+.+|+|..++.+ T Consensus 121 Iaav~G~a~GgG~~lal~~D~ria~~~~ 148 (263) T 2j5g_A 121 ISAVNGAALLHSEYILTTDIILASENTV 148 (263) T ss_dssp EEEECSEECSCGGGGGGCSEEEEETTCE T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3022114444556664003555645433 No 131 >>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:25-152) Probab=73.76 E-value=4.2 Score=20.50 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=35.1 Q ss_pred CEEEEECC-CCCEECCHHHCCCCCEEEEEEECEE-EEEEEEECCCC Q ss_conf 61999848-9889577789299986999991109-99999505788 Q gi|254780791|r 461 GYTSIQDT-NNNFITQKRNLATKTRILINFFDGQ-ANAIVINKAPP 504 (529) Q Consensus 461 GYaiv~~~-~GkiI~s~~~l~~gd~i~i~l~DG~-v~a~V~~k~~~ 504 (529) |-.++.+. +|-++++..-+...+.+.+.|.||+ ..++|.+..+. T Consensus 64 GSGfii~~d~G~IlTn~HVV~~~~~i~V~~~dg~~~~a~vv~~d~~ 109 (128) T 1ky9_A 64 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPR 109 (128) T ss_dssp EEEEEEETTTTEEEEEHHHHTTEEEEEEEETTSCEEEEEEEEEETT T ss_pred EEEEEEECCCCEEEECCEEECCCCEEEEECCCCCEEEEEEEEECCC T ss_conf 5799997993299978009998831304737992898999972455 No 132 >>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha- beta protein, hydrolase; 2.20A {Escherichia coli} (A:21-106,A:203-219) Probab=73.02 E-value=3.9 Score=20.79 Aligned_cols=43 Identities=23% Similarity=0.439 Sum_probs=36.7 Q ss_pred CEEEEECCCCCEECCHHHCCCCCEEEEEEECEEE-EEEEEECCC Q ss_conf 6199984898895777892999869999911099-999950578 Q gi|254780791|r 461 GYTSIQDTNNNFITQKRNLATKTRILINFFDGQA-NAIVINKAP 503 (529) Q Consensus 461 GYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v-~a~V~~k~~ 503 (529) |-.++-+++|.++++..-+...+.+.+.|.||+. .++|....| T Consensus 24 GSGfiI~~~G~ILTnaHVV~~a~~i~V~~~dg~~~~A~vv~~D~ 67 (103) T 1te0_A 24 GSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDS 67 (103) T ss_dssp EEEEECSTTCEEEEEHHHHTTCSEEEEECTTSCEEEEEEEEEET T ss_pred EEEEEEECCCEEEECCEEECCCCCCCEEECCCCCCCEEEEEEEC T ss_conf 59999939928998830575753321340378642114666404 No 133 >>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} (A:1-221) Probab=71.70 E-value=6.6 Score=18.73 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=46.3 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHH--------------H--CCHHHHHHHHHHCCCEE Q ss_conf 111036799999999741003576777589995168884---4422--------------0--07699999997489048 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLW--------------H--FNDEMIVRAIANSSIPI 243 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~--------------~--FN~e~laraI~~~~iPV 243 (529) ...-..++.++++.++... .+-+||+.-+|+.+ -||. . ..-..+.+.+..||.|| T Consensus 29 ~~~~~~~l~~~~~~~~~d~------~v~~vi~~g~~~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ 102 (221) T 3i47_A 29 DNQLLTEMRIRLDSAINDT------NVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPT 102 (221) T ss_dssp CHHHHHHHHHHHHHHHHCT------TCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCE T ss_pred CHHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE T ss_conf 9999999999999997489------9169999156776556730444301222321110136789999999998289878 Q ss_pred EEEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 8520-577752-5898864123777214 Q gi|254780791|r 244 ISAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 244 isgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) |.+| ||-.-- ...=+.+|+|..|+.+ T Consensus 103 Iaav~G~a~GgG~~lal~~D~~ia~~~a 130 (221) T 3i47_A 103 IAMVQGAAFGGGAGLAAACDIAIASTSA 130 (221) T ss_dssp EEEECSEEETHHHHHHHHSSEEEEETTC T ss_pred EEEECCEECCCCHHHHHCCCCCCCCCCC T ss_conf 9998998767622555052302468997 No 134 >>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} (A:1-127,A:265-275) Probab=71.65 E-value=4.4 Score=20.34 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=52.0 Q ss_pred CCCCEEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 26528999847842----58999999863059758999721001--1110367999999997410035767775899951 Q gi|254780791|r 143 FIPKIIAVITSPTG----AVIRDILQRISCRFPLRVIIFPVKVQ--GDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529) Q Consensus 143 ~~p~~i~vits~~~----a~~~D~~~~~~~r~p~~~~~~p~~vQ--G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529) .-+++|+||.-+.+ ..+.++.+.+.++. +++.+....-. +..-...+... ... ..+|+||++= T Consensus 3 ~~~kkv~ii~n~~~~~~~~~~~~i~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~~d~vv~~G 71 (138) T 2an1_A 3 NHFKCIGIVGHPRHPTALTTHEMLYRWLCDQG-YEVIVEQQIAHELQLKNVPTGTLA--EIG--------QQADLAVVVG 71 (138) T ss_dssp -CCCEEEEECC-------CHHHHHHHHHHHTT-CEEEEEHHHHHHTTCSSCCEECHH--HHH--------HHCSEEEECS T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC-CEEEEEHHHHHHCCCCCCCCCCHH--HHC--------CCCCEEEEEC T ss_conf 66968999950899799999999999999786-999980789876399888846655--725--------4776899977 Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEE-EEECCCCCC Q ss_conf 6888444220076999999974890488-520577752 Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPII-SAIGHETDW 253 (529) Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVi-sgIGHE~D~ 253 (529) |=|.+- .+++.+....+||+ --.|+--++ T Consensus 72 GDGTil--------~a~~~l~~~~ipi~~Ip~Gt~n~l 101 (138) T 2an1_A 72 GDGNML--------GAARTLARYDINVIGINRGNLGFL 101 (138) T ss_dssp CHHHHH--------HHHHHHTTSSCEEEEBCSSSCCSS T ss_pred CCCHHH--------HHHHHHCCCCCEEEEECCCCCCEE T ss_conf 883598--------886764255745997014554325 No 135 >>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:1-121,A:252-293) Probab=71.62 E-value=6.6 Score=18.72 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=62.4 Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 528999847-842589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -..||||.+ .+..-+..+++.+.. ..++.++++.+ ...+..-.++++.+.... +|.|||.-... T Consensus 20 S~tIgvivpdl~~~ff~~ii~gI~~~a~~~Gy~vii~~s----~~~~e~e~~~l~~l~~~~-------vDGiIl~~~~~- 87 (163) T 2iks_A 20 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS----EDQPDNEXRCIEHLLQRQ-------VDAIIVSTSLP- 87 (163) T ss_dssp CCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTT-------CSEEEECCSSC- T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHCCCCC-------CCEEEEECCCC- T ss_conf 998999929998879999999999999986999999947----997588999876201454-------43578831433- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 444220076999999974890488520577752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) .++.....+.+.++|+|. |++..+..=+|.| T Consensus 88 -------~~~~~~~~l~~~~iPvVl-id~~~~~~~~~sV 118 (163) T 2iks_A 88 -------PEHPFYQRWANDPFPIVA-LDRALDREHFTSV 118 (163) T ss_dssp -------TTCHHHHTTTTSSSCEEE-EESCCCTTTCEEE T ss_pred -------CCHHHHHHHHCCCCCEEE-EECCCCCCCCCCC T ss_conf -------212577776516976899-8414433335643 No 136 >>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} (A:1-106,A:248-291) Probab=69.91 E-value=7.1 Score=18.43 Aligned_cols=88 Identities=18% Similarity=0.109 Sum_probs=60.1 Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 6528999847-84258999999863---0597589997210011110367999999997410035767775899951688 Q gi|254780791|r 144 IPKIIAVITS-PTGAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 144 ~p~~i~vits-~~~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) =+.+||+|.+ .+..-+..++.-+. ++.++++.++. ++..+.+...+|+.+.... +|.||+.=.+. T Consensus 4 ks~~Igvi~~~~~~~f~~~i~~gi~~aa~~~Gy~l~i~~----~~~d~~~~~~~i~~l~~~~-------vdgIIi~~~~~ 72 (150) T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALD----AGRNDQTQVSQIQTLIAQK-------PDAIIEQLGNL 72 (150) T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEE----CTTCHHHHHHHHHHHHHHC-------CSEEEEESSCH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHHHCC-------CCEEEEECCCC T ss_conf 899999995899998999999999999997399999993----8999999999999999759-------99999927840 Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 844422007699999997489048852057 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGH 249 (529) . ..+.+.+...+..||||+--.+ T Consensus 73 ~-------~~~~~i~~l~~~gIPvV~i~~~ 95 (150) T 3l49_A 73 D-------VLNPWLQKINDAGIPLFTVDTA 95 (150) T ss_dssp H-------HHHHHHHHHHHTTCCEEEESCC T ss_pred H-------HHHHHHHHHHHCCCCEEECCCC T ss_conf 3-------0589999999869919966776 No 137 >>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:1-196,A:382-396) Probab=69.59 E-value=7.2 Score=18.38 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=49.4 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH--HHCCCEEEEEEC------ Q ss_conf 721001111036799999999741003576777589995168884442200769999999--748904885205------ Q gi|254780791|r 177 FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI--ANSSIPIISAIG------ 248 (529) Q Consensus 177 ~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI--~~~~iPVisgIG------ 248 (529) ++..+.|......+...+..+...-.. .+||+|++. .| -.+.+|-|+ +.+.|||+-==| T Consensus 83 ~~l~~~~~s~~~~~~~~~~~l~~~l~~---~~PD~VlV~------GD----~~~~La~AlaA~~~~IPvaHieaGlrs~d 149 (211) T 3dzc_A 83 LNIMEPGQTLNGVTSKILLGMQQVLSS---EQPDVVLVH------GD----TATTFAASLAAYYQQIPVGHVEAGLRTGN 149 (211) T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHH---HCCSEEEEE------TT----SHHHHHHHHHHHTTTCCEEEETCCCCCSC T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCCCC------CC----CCCCHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 103889988999999999999998986---267645400------14----65421377776503553268504655568 Q ss_pred ------CCCCCHHHHHHHCCC-CCCCHHHH Q ss_conf ------777525898864123-77721456 Q gi|254780791|r 249 ------HETDWTLADYAADLR-APTPTGAA 271 (529) Q Consensus 249 ------HE~D~Tl~D~VAD~R-a~TPTaAA 271 (529) -|...-++|-+||+- +|||.++. T Consensus 150 ~~~g~peE~~R~~is~lA~lhF~~t~~~~~ 179 (211) T 3dzc_A 150 IYSPWPEEGNRKLTAALTQYHFAPTDTSRA 179 (211) T ss_dssp TTSSTTHHHHHHHHHHTCSEEEESSHHHHH T ss_pred CCCCCHHHHHHHCCCCCCEEEEECCHHHHH T ss_conf 653561455422036521278623537899 No 138 >>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:) Probab=69.23 E-value=7.3 Score=18.32 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=38.0 Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEEEE Q ss_conf 279998748947999997352105866814598899999-9667528843799999 Q gi|254780791|r 52 HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQIIIE 106 (529) Q Consensus 52 H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~v~ 106 (529) .+.+.+.|+.+.|+.++|...+..+ +.|+-|.+.+ ++..| +|.++|.+. T Consensus 63 ~~~~~i~D~Tg~I~~tlW~~~~~~~----~~Gdvv~i~~~~v~~~--~g~~~l~~~ 112 (145) T 1wjj_A 63 IVECLIGDETGCILFTARNDQVDLM----KPGATVILRNSRIDMF--KGTMRLGVD 112 (145) T ss_dssp CEEEEEECSSCEEEEEECTTHHHHT----CTTCEEEEEEEEEEEE--TTEEEEEEC T ss_pred EEEEEEECCCCEEEEEEECCCHHHC----CCCCEEEEECEEEEEE--CCEEEEEEC T ss_conf 9999998588869999803522005----7688999945699888--999999979 No 139 >>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* (A:) Probab=69.02 E-value=7.4 Score=18.29 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=57.8 Q ss_pred CEEEEEECCCHH-------------HHHHHHHHH---HHC--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 289998478425-------------899999986---305--97589997210011110367999999997410035767 Q gi|254780791|r 146 KIIAVITSPTGA-------------VIRDILQRI---SCR--FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCP 207 (529) Q Consensus 146 ~~i~vits~~~a-------------~~~D~~~~~---~~r--~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~ 207 (529) .+|-||-.|+=. -+.||...+ ... +.+++..|-+=.-| +|+..|..+-.. T Consensus 10 ~~IlviNGPNLn~LG~ReP~iYG~~Tl~~i~~~~~~~a~~~g~~vei~~~QSN~EG-----elId~i~~a~~~------- 77 (176) T 2c4w_A 10 MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEG-----EIIDKIQESVGS------- 77 (176) T ss_dssp EEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHH-----HHHHHHHHHHSS------- T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH-----HHHHHHHHHHCC------- T ss_conf 87999858880105887886488469999999999999981896100247777899-----999999997079------- Q ss_pred CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 77589995168884442200769999999748904885 Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) ++|.|||==|| |..-+..+..|+..+++|+|- T Consensus 78 ~~dgiIINpgA------yTHtSiAl~DAl~~~~~P~VE 109 (176) T 2c4w_A 78 EYEGIIINPGA------FSHTSIAIADAIMLAGKPVIE 109 (176) T ss_dssp SCCEEEEECGG------GGGTCHHHHHHHHTSSSCEEE T ss_pred CCEEEEECCHH------HEEEEEEHHHHHHHCCCCEEE T ss_conf 82289955536------324110128788633997899 No 140 >>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:146-325) Probab=68.79 E-value=7.5 Score=18.25 Aligned_cols=86 Identities=27% Similarity=0.291 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEE-----------EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH Q ss_conf 99999765401226100163102652899-----------9847842589999998630597589997210011110367 Q gi|254780791|r 121 EKRKKKLLEEGLFSDQHKNPIPFIPKIIA-----------VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKE 189 (529) Q Consensus 121 e~lk~~L~~eGlfd~~~k~~lP~~p~~i~-----------vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~ 189 (529) +++.++|-.+-+|.. + +||..| .+..-.+....|++.|+.+ + ++.+ T Consensus 78 ~~ll~~ll~~pff~~----~---pPKStgrE~F~~~~~~~~l~~~~~ls~~D~~aTlt~---~-------------TA~s 134 (180) T 3cqy_A 78 PQLLAQLLSHPYFSL----A---YPKSTGRELFNQAWLEQQLSAFNQLNEEDIQSTLLD---L-------------TCHS 134 (180) T ss_dssp HHHHHHHHTCGGGGS----C---SSCCCCSSSSSHHHHHHHTTTCTTSCHHHHHHHHHH---H-------------HHHH T ss_pred HHHHHHHHHHHHCCC----C---CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---H-------------HHHH T ss_conf 899999987442025----7---765424555445432443201245782025567888---9-------------9999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCC-CEEEE Q ss_conf 999999997410035767775899951688844422007699999997489-04885 Q gi|254780791|r 190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSS-IPIIS 245 (529) Q Consensus 190 i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~-iPVis 245 (529) |++++..+.. +|- |++=|||+ .|..-+-+--..++ ++|.+ T Consensus 135 I~~~~~~~~~---------~~~-v~v~GGGa------~N~~Lm~~L~~~l~~~~v~~ 175 (180) T 3cqy_A 135 IAQDILKLAQ---------EGE-LFVCGGGA------FNAELXQRLAALLPGYRIDT 175 (180) T ss_dssp HHHHHHHHCS---------SEE-EEEESGGG------GCHHHHHHHHHHCTTEEEEE T ss_pred HHHHHHHHCC---------CCC-EEEECCCC------CCHHHHHHHHHHCCCCEEEE T ss_conf 8755554135---------672-38966875------68999999997678985742 No 141 >>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A (A:295-407,A:484-593) Probab=68.63 E-value=7.3 Score=18.35 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=53.8 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHH Q ss_conf 1111036799999999741003576777589995168884442200769999999748904885205777--52589886 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHET--DWTLADYA 259 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~--D~Tl~D~V 259 (529) -+.....+|.++|+.++..... ++=++-+=-.||++.....+ ....+.+.+++.|||+.++.-. ==..+=+. T Consensus 25 ~~~~~~~~l~~~l~~~~~d~~v----k~vvl~~~s~Ggdv~~~~~i--~~~~~~~~~~~kpvva~~~g~a~sgG~~ia~a 98 (223) T 3bf0_A 25 QGNVGGDTTAAQIRDARLDPKV----KAIVLRVNSPGGSVTASEVI--RAELAAARAAGKPVVVSMGGMAASGGYWISTP 98 (223) T ss_dssp TTSEEHHHHHHHHHHHHHCTTE----EEEEEEEEEEEECHHHHHHH--HHHHHHHHHTTCCEEEEEEEEEETHHHHTTTT T ss_pred CCCCCCHHHHHHHHHHHHCCCC----EEEEEEECCCCCCHHHHHHH--HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHC T ss_conf 6766627789999877506664----49999963998666799999--99999998659977999678243120476535 Q ss_pred HCCCCCCCHH Q ss_conf 4123777214 Q gi|254780791|r 260 ADLRAPTPTG 269 (529) Q Consensus 260 AD~Ra~TPTa 269 (529) ||.+..+|++ T Consensus 99 ~D~iva~~~s 108 (223) T 3bf0_A 99 ANYIVANPST 108 (223) T ss_dssp CSEEEECTTC T ss_pred CCEEECCCCC T ss_conf 6802228865 No 142 >>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} (A:1-243) Probab=68.57 E-value=7.5 Score=18.22 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=46.6 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-------HHHHHHC--------------CHHHHHHHHHHCCCEE Q ss_conf 103679999999974100357677758999516888-------4442200--------------7699999997489048 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-------IEDLWHF--------------NDEMIVRAIANSSIPI 243 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-------~eDL~~F--------------N~e~laraI~~~~iPV 243 (529) ....++..+++.+.... .+-+||+.-+|.. .+++..+ .-..+..++..||.|+ T Consensus 30 ~~~~~l~~~l~~~~~d~------~v~~vVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~ 103 (243) T 1nzy_A 30 KAMQEVTDALNRAEEDD------SVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV 103 (243) T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE T ss_pred HHHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 99999999999998687------937999979998725885588765123543204677888888999999999689989 Q ss_pred EEEE-CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf 8520-57775-25898864123777214 Q gi|254780791|r 244 ISAI-GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 244 isgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) |++| ||=.- =...-+.+|.|..++.+ T Consensus 104 Iaai~G~a~GgG~~la~~~D~ria~~~a 131 (243) T 1nzy_A 104 LAAINGVAAGGGLGISLASDMAICADSA 131 (243) T ss_dssp EEEECSEEETHHHHHHHHSSEEEEETTC T ss_pred EEEECCCCCCCCCEEEHHCCHHHHHHHC T ss_conf 9986785465553302410476660202 No 143 >>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure initiative; 2.00A {Rhodopseudomonas palustris} (A:1-210) Probab=68.14 E-value=5.2 Score=19.65 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=26.3 Q ss_pred CHHHHHHHHHHCCCEEEEEE-CCCCC-CHHHHHHHCCCCCCCHH Q ss_conf 76999999974890488520-57775-25898864123777214 Q gi|254780791|r 228 NDEMIVRAIANSSIPIISAI-GHETD-WTLADYAADLRAPTPTG 269 (529) Q Consensus 228 N~e~laraI~~~~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529) .-..+...+..||.|||++| ||=.= -...=+.+|+|..++.+ T Consensus 94 ~~~~l~~~~~~~~kp~Iaav~G~a~GgG~~l~l~~D~~ia~~~a 137 (210) T 3hin_A 94 TWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASA 137 (210) T ss_dssp HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCEEHHHHHHHHCCCCCCH T ss_conf 57888877520574089998541235252221100121322120 No 144 >>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:1-111,A:250-293) Probab=68.00 E-value=7.7 Score=18.13 Aligned_cols=85 Identities=9% Similarity=0.156 Sum_probs=56.8 Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 6528999847-842589999998630---597589997210011110367999999997410035767775899951688 Q gi|254780791|r 144 IPKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 144 ~p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) -..+||||.+ .+..-+..++.-+.+ +..+.++++. ++.-+..-.++|+.+... ++|.|||.=.++ T Consensus 7 ks~tIgvIi~~~~npf~~~i~~gi~~~a~~~Gy~lii~~----~~~d~~~q~~~i~~li~~-------~vdGiII~p~~~ 75 (155) T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVAT----SQNSRISEREQILEFVHL-------KVDAIFITTLDD 75 (155) T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE----CSSCHHHHHHHHHHHHHT-------TCSEEEEECSCT T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEE----CCCCHHHHHHHHHHHHHC-------CCCEEEECCCCC T ss_conf 999899999789879999999999999998799899997----999989999999999976-------998999715663 Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 844422007699999997489048852 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisg 246 (529) . ........+.+..||||.= T Consensus 76 ~-------~~~~~l~~L~~~gIPvV~i 95 (155) T 3l6u_A 76 V-------YIGSAIEEAKKAGIPVFAI 95 (155) T ss_dssp T-------TTHHHHHHHHHTTCCEEEE T ss_pred H-------HHHHHHHHHHHCCCEEEEE T ss_conf 0-------1599999999769929998 No 145 >>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:1-104,A:238-283) Probab=67.82 E-value=7.8 Score=18.10 Aligned_cols=98 Identities=10% Similarity=0.122 Sum_probs=58.7 Q ss_pred CEEEEEECCC-HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 2899984784-2589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSPT-GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~~-~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) |+||||.+.. .--+..++..+.+ +.++++.++++.- .+..-...|..+-.. ++|.||+.=...+. T Consensus 2 ktIgii~~~~~~~f~~~ii~gi~~aa~~~G~~l~i~~~~~----~~~~e~~~i~~ll~~-------~vdgIIi~~~~~~~ 70 (150) T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQN----DSSKELSNVEDLIQQ-------KVDVLLINPVDSDA 70 (150) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTT----CHHHHHHHHHHHHHT-------TCSEEEECCSSTTT T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHH-------CCCCCCCCCCCCCC T ss_conf 2999985789898999999999999997599999993899----999999999999862-------32334456632222 Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC Q ss_conf 4422007699999997489048852057775258988641 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529) ...+...+.+..||||+==.+..+....-+|.| T Consensus 71 -------~~~~~~~l~~~gIPvV~id~~~~~~~~~~~v~~ 103 (150) T 2ioy_A 71 -------VVTAIKEANSKNIPVITIDRSANGGDVVCHIAS 103 (150) T ss_dssp -------THHHHHHHHHTTCCEEEESSCCSSSCCSEEEEE T ss_pred -------CCCCCHHHHCCCCEEEEEECCCCCCCCCEEEEE T ss_conf -------210000233157528998157788886729974 No 146 >>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* (A:1-95) Probab=67.79 E-value=2.7 Score=22.14 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=38.7 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 999847842589999998630597-5-899972100111103679999999974100357677758999516888 Q gi|254780791|r 148 IAVITSPTGAVIRDILQRISCRFP-L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 148 i~vits~~~a~~~D~~~~~~~r~p-~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ++-...++.+.+.+....-..+|. . ..++||... .+|.++++.+++ .++-+++||||. T Consensus 17 ~~~~~~~~d~~~~~~~~~~~~~~~~~P~~Vv~P~s~------~eV~~vv~~~~~---------~~i~v~~rggG~ 76 (95) T 1zr6_A 17 DVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRST------EDIAAAVQCGLD---------AGVQISAKGGGH 76 (95) T ss_dssp TCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSH------HHHHHHHHHHHH---------HTCCEEEESSCC T ss_pred CEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCC T ss_conf 727879986417888767752558995089964989------999999999998---------797599986997 No 147 >>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:1-235) Probab=67.72 E-value=7.8 Score=18.09 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=48.6 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCCHHHHH Q ss_conf 11110367999999997410035767775899951688844422007699---999997489048852057775258988 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDWTLADY 258 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~Tl~D~ 258 (529) .|.=-.+.+.+-++..-.. .+|-|++ +|+...-|.+..|+ +++...+..+|||.|||+..-...+++ T Consensus 41 dg~iD~~~~~~~i~~l~~~-------Gv~gi~v---~G~tGE~~~Lt~eEr~~~v~~~~~~~~pvi~gv~~~~t~~~i~~ 110 (235) T 2hmc_A 41 DRTPDFDALVRKGKELIAD-------GXSAVVY---CGSXGDWPLLTDEQRXEGVERLVKAGIPVIVGTGAVNTASAVAH 110 (235) T ss_dssp TSSBCHHHHHHHHHHHHHT-------TCCCEEE---SSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHC-------CCCEEEE---CEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 8782999999999999977-------9999997---83375723089999999999874157751004420137788888 Q ss_pred HHCC Q ss_conf 6412 Q gi|254780791|r 259 AADL 262 (529) Q Consensus 259 VAD~ 262 (529) +-+. T Consensus 111 a~~A 114 (235) T 2hmc_A 111 AVHA 114 (235) T ss_dssp HHHH T ss_pred HHHH T ss_conf 8789 No 148 >>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265) Probab=67.56 E-value=7.9 Score=18.06 Aligned_cols=91 Identities=11% Similarity=0.037 Sum_probs=60.0 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -..||||+.. +...+.++++-+.+ ..++.++++.+.-..+ ......++|+.+... ++|.||+.=. T Consensus 8 S~tIgviip~~~~~f~~~ii~gi~~~a~~~gy~lii~~~~~~~~-~~~~~~~~i~~l~~~-------~vDGiIi~~~--- 76 (132) T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGEST-PREQALEAVRFLIGR-------DCDGVVVISH--- 76 (132) T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSC-HHHHHHHHHHHHHHT-------TCSEEEECCS--- T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CHHHHHHHHHHHHHC-------CCCEEEEECC--- T ss_conf 99799992898788999999999999998699799996889864-199999999999856-------9998985223--- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 444220076999999974890488520577752 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529) ..+....+.+.+..||+|. ||.+.|- T Consensus 77 ------~~~~~~i~~l~~~~IPvV~-id~~~~~ 102 (132) T 2rgy_A 77 ------DLHDEDLDELHRXHPKXVF-LNRAFDA 102 (132) T ss_dssp ------SSCHHHHHHHHHHCSSEEE-ESSCCTT T ss_pred ------CCCHHHHHHHHHCCCCCEE-EEECCCC T ss_conf ------2104789987403764203-5203432 No 149 >>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A (A:) Probab=67.49 E-value=7.1 Score=18.45 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=45.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCCHH--------HHHHHHHHCCCEEEEEE-CCCCCC Q ss_conf 36799999999741003576777589995168884----442200769--------99999974890488520-577752 Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFNDE--------MIVRAIANSSIPIISAI-GHETDW 253 (529) Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN~e--------~laraI~~~~iPVisgI-GHE~D~ 253 (529) ..++..++..++...+ +- +||.+|+|-. -|+..+.+. .+..+++.||.|||.+| ||-.-- T Consensus 32 ~~~l~~~l~~~~~d~~------~~-~vil~g~~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~Iaai~G~a~gg 104 (243) T 2q35_A 32 VEGLRHCFSVVAQNQQ------YK-VVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGG 104 (243) T ss_dssp HHHHHHHHHHHHHCTT------CC-EEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEETH T ss_pred HHHHHHHHHHHHHCCC------CE-EEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC T ss_conf 9999999999975999------35-9998176322122366777640343422222232323346345543332035343 Q ss_pred -HHHHHHHCCCCCCCHH Q ss_conf -5898864123777214 Q gi|254780791|r 254 -TLADYAADLRAPTPTG 269 (529) Q Consensus 254 -Tl~D~VAD~Ra~TPTa 269 (529) ...=+.+|.|..||++ T Consensus 105 G~~lala~D~ri~~~~~ 121 (243) T 2q35_A 105 GLLLGLYADFVVFSQES 121 (243) T ss_dssp HHHHHHTSSEEEEESSS T ss_pred CCCCCCCCCCCCCCCCC T ss_conf 44320034310001244 No 150 >>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:1-102,A:224-275) Probab=67.14 E-value=8 Score=18.00 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=67.7 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) +.||||.+. +..-+.++++-+.+ +.++.++++++ .+.+..-.+.++.+... ++|.||+.=.. T Consensus 4 ~~Igvi~~~~~~~f~~~i~~gi~~~a~~~gy~~~i~~~----~~~~~~~~~~i~~l~~~-------~vdGiIi~~~~--- 69 (154) T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS----DYSIEQEEKLLSTFLES-------RPAGVVLFGSE--- 69 (154) T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC----TTCHHHHHHHHHHHHTS-------CCCCEEEESSC--- T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHH-------CCCEEEEECCC--- T ss_conf 59999918887779999999999999986998999968----99989999999999970-------99878730121--- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHH Q ss_conf 442200769999999748904885205777525898864123777214 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTG 269 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTa 269 (529) .+......+.+..+|+|. +|...+..-+|+|...-.|.=|- T Consensus 70 ------~~~~~~~~l~~~~iP~V~-~~~~~~~~~~~~V~~~~~P~LTT 110 (154) T 3d8u_A 70 ------HSQRTHQLLEASNTPVLE-IAELSSKASYLNIGVHAYPSLTS 110 (154) T ss_dssp ------CCHHHHHHHHHHTCCEEE-ESSSCSSSSSEEECBTSSSCCEE T ss_pred ------CHHHHHHHHHHCCCCCEE-CCCCCCCCCCCEEEEHCCCCCEE T ss_conf ------015799999852886200-01123578888886316899449 No 151 >>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} (A:1-102,A:213-228) Probab=66.94 E-value=8.1 Score=17.97 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=58.2 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCC-------CEEEEEEECCC----------CCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 2899984784258999999863059-------75899972100----------111103679999999974100357677 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRF-------PLRVIIFPVKV----------QGDECPKEIANAILQLNTLKEGRTCPR 208 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~-------p~~~~~~p~~v----------QG~~a~~~i~~ai~~~~~~~~~~~~~~ 208 (529) |+||||..-+-.+=.+|.+.+.++. ...++++..+. +++...+.+.++++...+.+ T Consensus 2 K~IGIIGGmGp~AT~~yy~~I~~~~~a~~d~~~~~~ii~s~~~~~~r~~~~~~~~~~~~~~L~~~~~~L~~aG------- 74 (118) T 1jfl_A 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECG------- 74 (118) T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHHHHHHHHHHHHHHT------- T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC------- T ss_conf 8899962779799999999999999875488788288885797778888861245779999999999999769------- Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 758999516888444220076999999974890488520 Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI 247 (529) +|.++|+= -.==++|++ --..+++|+|+-. T Consensus 75 ad~ivi~c----NTaH~~~d~-----i~~~~~iPllh~~ 104 (118) T 1jfl_A 75 ADFIIMPC----NTAHAFVED-----IRKAIKIPIISPM 104 (118) T ss_dssp CSEEECSC----TGGGGGHHH-----HHHHCSSCBCCHH T ss_pred CCEEEEEC----HHHHHHHHH-----HHHHCCCCCCCCH T ss_conf 99999955----279999999-----9997189961359 No 152 >>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} (A:1-211,A:433-504) Probab=66.85 E-value=8.1 Score=17.95 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=67.7 Q ss_pred CCCCCEEEEEECC-CHHHHHHHHHHH----HHCCC-EEEEEEE---------------------------CCCCCCC--- Q ss_conf 0265289998478-425899999986----30597-5899972---------------------------1001111--- Q gi|254780791|r 142 PFIPKIIAVITSP-TGAVIRDILQRI----SCRFP-LRVIIFP---------------------------VKVQGDE--- 185 (529) Q Consensus 142 P~~p~~i~vits~-~~a~~~D~~~~~----~~r~p-~~~~~~p---------------------------~~vQG~~--- 185 (529) -.-++|||||||- ...+++.+++-+ +..++ .+++-|. +..-|.. T Consensus 69 ~~~~~rIgIv~sGG~aPG~NnVI~gi~~~l~~~~~~~~v~Gf~~G~~GL~~~~~ieLt~~~i~~~~n~GGt~l~~Srr~~ 148 (283) T 2f48_A 69 FSKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTK 148 (283) T ss_dssp CCSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCC T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEEECCCCCC T ss_conf 78987799978278718899999999999998689989999864158865899899998998468717991710799999 Q ss_pred --HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC Q ss_conf --036799999999741003576777589995168884442200769999999748904885205777525898864123 Q gi|254780791|r 186 --CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR 263 (529) Q Consensus 186 --a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R 263 (529) .++..-++++.+.+++ .|.+|++=|-||..+-....++-.. ..++++|| ||-.-+|- |+. T Consensus 149 ~~~~e~~~~i~~~l~~l~-------Id~LviIGGdgS~t~A~~LaE~~~~---~~~~i~VI-GVPKTIDN-------DL~ 210 (283) T 2f48_A 149 IETEEHYNKALFVAKENN-------LNAIIIIGGDDSNTNAAILAEYFKK---NGENIQVI-GVPKTIDA-------DLR 210 (283) T ss_dssp CCSHHHHHHHHHHHHHTT-------CSEEEEEESHHHHHHHHHHHHHHHH---TTCCCEEE-EEEEETTC-------CCC T ss_pred CCCHHHHHHHHHHHHHCC-------CCEEEEECCHHHHHHHHHHHHHHHH---CCCCCEEE-EEECCCCC-------CCC T ss_conf 767788999999998718-------8879995888999999999999997---08995089-72032146-------757 Q ss_pred CCCCH Q ss_conf 77721 Q gi|254780791|r 264 APTPT 268 (529) Q Consensus 264 a~TPT 268 (529) -..|| T Consensus 211 ~~~Ps 215 (283) T 2f48_A 211 NAFPS 215 (283) T ss_dssp CSCCC T ss_pred CCCCC T ss_conf 68999 No 153 >>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} (A:1-143,A:311-332) Probab=66.17 E-value=8.3 Score=17.85 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=56.1 Q ss_pred CCCCCEEEEEECCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 02652899984784---258999999863059758999721001111036799999999741003576777589995168 Q gi|254780791|r 142 PFIPKIIAVITSPT---GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 142 P~~p~~i~vits~~---~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) ...++++.||-.+. +.+...+...+.. +.+.+.+|.+.-.+ -..++ ++.+... .+|+||++=|- T Consensus 26 ~~~~~~~~vivNp~SG~~~~~~~i~~~l~~-~g~~~~v~~t~~~~--~~~~~---~~~~~~~-------~~d~Ivi~GGD 92 (165) T 2bon_A 26 MAEFPASLLILNGKSTDNLPLREAIMLLRE-EGMTIHVRVTWEKG--DAARY---VEEARKF-------GVATVIAGGGD 92 (165) T ss_dssp ----CCEEEEECSSSTTCHHHHHHHHHHHT-TTCCEEEEECCSTT--HHHHH---HHHHHHH-------TCSEEEEEESH T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHH-CCCEEEEEECCCCH--HHHHH---HHHHHHC-------CCCEEEEECCC T ss_conf 456996799987876788549999999997-79869999648805--79999---9999877-------99999999886 Q ss_pred CCHHHHHHCCHHHHHHHHHHCCC----E-EEEEECCCCCCHHHHHHHCCCCCC-CHHHH Q ss_conf 88444220076999999974890----4-885205777525898864123777-21456 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSI----P-IISAIGHETDWTLADYAADLRAPT-PTGAA 271 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~~~i----P-VisgIGHE~D~Tl~D~VAD~Ra~T-PTaAA 271 (529) |++-+ ++..++.+.. | .|-.-| |--||.=++..++ |..|. T Consensus 93 GTi~~--------vl~~l~~~~~~~~~~i~iiP~G-----T~N~fA~~Lg~~~~~~~al 138 (165) T 2bon_A 93 GTINE--------VSTALIQCEGDDIPALGILPLG-----TANDFATSVGIPEALDKAL 138 (165) T ss_dssp HHHHH--------HHHHHHHCCSSCCCEEEEEECS-----SSCHHHHHTTCCSSHHHHH T ss_pred CHHHH--------HHHHHHHCCCCCCCEEEEEECC-----CCCCCHHHCCCCCCHHHHH T ss_conf 88999--------9999874165679738997478-----6141214359999989999 No 154 >>3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A (A:1-210) Probab=66.13 E-value=5.4 Score=19.50 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=50.8 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC--CHHHHHH Q ss_conf 11103679999999974100357677758999-51688844422007699999997489048852057775--2589886 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIIL-ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETD--WTLADYA 259 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii-~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D--~Tl~D~V 259 (529) ......++.++|+.+....+ ..|||+ ..|||..... +.-..+.+++..++.|||+.+.--.- -+.+=.. T Consensus 20 ~~~~~~~l~~~l~~~~~d~~------~~vvi~~~~~g~~~~g~--d~~~~~~~~l~~~~~~via~~~G~a~~~g~~la~~ 91 (210) T 3bpp_A 20 TSYTYDQFDRYITIAEQDNA------EAIIIELDTPGGRADAM--MNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALG 91 (210) T ss_dssp CHHHHHHHHHHHHHHHHTTC------SEEEEEEEBSCBCHHHH--HHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHCCC------CEEEEEECCCCCCHHHH--HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH T ss_conf 87999999999999986899------76999967997427769--99999998741366532565323235678999873 Q ss_pred HCCCCCCCHHH Q ss_conf 41237772145 Q gi|254780791|r 260 ADLRAPTPTGA 270 (529) Q Consensus 260 AD~Ra~TPTaA 270 (529) +|.|..+|.+. T Consensus 92 ~d~~~~~~~a~ 102 (210) T 3bpp_A 92 SHLIAMAPGTS 102 (210) T ss_dssp SSEEEECTTCE T ss_pred CCHHHHCCCEE T ss_conf 58000010234 No 155 >>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} (A:1-227) Probab=66.07 E-value=8.3 Score=17.84 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=45.0 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHH----------------CC--HHHHHHHHHHCCC Q ss_conf 1036799999999741003576777589995168884-----44220----------------07--6999999974890 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWH----------------FN--DEMIVRAIANSSI 241 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~----------------FN--~e~laraI~~~~i 241 (529) .-..++..++..++... .+- +||.+|.|.. .|+.. |. -..+..++..||. T Consensus 35 ~~~~~l~~al~~~~~d~------~v~-~vil~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 107 (227) T 3gkb_A 35 TMMRELRTVLTTLADDS------SVR-VIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQ 107 (227) T ss_dssp HHHHHHHHHHHHHHTCT------TCC-EEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHHHCC------CCE-EEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999997399------936-99996445554213567766654101000112227778899999999995742 Q ss_pred EEEEEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 488520-577752-5898864123777214 Q gi|254780791|r 242 PIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 242 PVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) |||++| ||=.-- ...=+.+|+|..|+.+ T Consensus 108 p~Iaav~G~a~GgG~~lala~D~~ia~~~a 137 (227) T 3gkb_A 108 VTIVKLAGKARGGGAEFVAAADMAFAAAET 137 (227) T ss_dssp EEEEEECSEEETHHHHHHHHSSEEEEETTT T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 101023443334444431111122323312 No 156 >>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} (A:) Probab=66.06 E-value=8.3 Score=17.83 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=43.7 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHH-------------HHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 10367999999997410035767775899951688-84---442-------------20076999999974890488520 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDL-------------WHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL-------------~~FN~e~laraI~~~~iPVisgI 247 (529) ....+|..+++.++.... +- +||.+|+| .+ -|| +...-..+...+..||.|||++| T Consensus 43 ~~~~~l~~~l~~~~~d~~------~~-~vv~~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Iaav 115 (257) T 1szo_A 43 TAHDELAYCFHDIACDRE------NK-VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAV 115 (257) T ss_dssp HHHHHHHHHHHHHHHCTT------CC-EEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEE T ss_pred HHHHHHHHHHHHHHHCCC------CE-EEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCEEEE T ss_conf 999999999999974999------63-99985245432334213443111222110000000011222322221001466 Q ss_pred -CCCCCCH-HHHHHHCCCCCCCHH Q ss_conf -5777525-898864123777214 Q gi|254780791|r 248 -GHETDWT-LADYAADLRAPTPTG 269 (529) Q Consensus 248 -GHE~D~T-l~D~VAD~Ra~TPTa 269 (529) ||=.--- -.=+.+|.|..+..+ T Consensus 116 ~G~a~ggG~~lal~~D~ria~~~a 139 (257) T 1szo_A 116 NGPVTNAPEIPVMSDIVLAAESAT 139 (257) T ss_dssp CSCBCSSTHHHHTSSEEEEETTCE T ss_pred ECCCCEECCCCCCCCCCCCCCCCE T ss_conf 134312123333322244677641 No 157 >>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:1-104,A:237-271) Probab=65.76 E-value=8.4 Score=17.79 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=58.1 Q ss_pred CEEEEEECCC-HHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 2899984784-258999999863---059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSPT-GAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~~-~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) .+||||.+.. ..-+..+.+-+. +++++++.++++.- .+..-.++++.+... ++|.||+.=.++.. T Consensus 2 ~tIgvi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~----~~~~~~~~i~~li~~-------~vdgiIi~~~~~~~ 70 (139) T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQN----NPAKELANVQDLTVR-------GTKILLINPTDSDA 70 (139) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTT----CHHHHHHHHHHHTTT-------TEEEEEECCSSTTT T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCCCCCCCCCCCC T ss_conf 8899992889898999999999999998599899995899----999999999999861-------87644321222223 Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 44220076999999974890488520577752 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529) ...+.+...+..||||+-=.+..+. T Consensus 71 -------~~~~l~~l~~~gIPvV~id~~~~~~ 95 (139) T 2dri_A 71 -------VGNAVKMANQANIPVITLDRQATKG 95 (139) T ss_dssp -------THHHHHHHHHTTCCEEEESSCCSSS T ss_pred -------CHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf -------1689999986377532356555545 No 158 >>3fdx_A Putative filament protein / universal stress protein F; structural genomics, APC60640.1, PSI-2, protein structure initiative; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* (A:) Probab=65.71 E-value=8.4 Score=17.78 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=33.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH-HCCHHHHHHHHHHCCCEEEE Q ss_conf 10011110367999999997410035767775899951688844422-00769999999748904885 Q gi|254780791|r 179 VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW-HFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 179 ~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~-~FN~e~laraI~~~~iPVis 245 (529) ..+.......+|++..+.. ++|+||+++.|-+..+.+ .=+.+ +-+-.+|.||+. T Consensus 87 ~~v~~g~~~~~i~~~a~~~----------~~dliVlG~~~~~~~~~~~gs~~~---~v~~~~~~pVlv 141 (143) T 3fdx_A 87 FHVAEGSPKDKILALAKSL----------PADLVIIASHRPDITTYLLGSNAA---AVVRHAECSVLV 141 (143) T ss_dssp EEEEESCHHHHHHHHHHHT----------TCSEEEEESSCTTCCSCSSCHHHH---HHHHHCSSEEEE T ss_pred EEEECCCHHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCCCCHHH---HHHHCCCCCEEE T ss_conf 9996288789999999871----------678899737889866660286999---999639999999 No 159 >>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:1-116,A:212-240) Probab=65.43 E-value=4.7 Score=20.08 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=55.3 Q ss_pred CCEEEEEECCCH-HHHHHHHHHHHH-CCCE-EEEEEECCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 528999847842-589999998630-5975-89997210011110-3679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSPTG-AVIRDILQRISC-RFPL-RVIIFPVKVQGDEC-PKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~~~-a~~~D~~~~~~~-r~p~-~~~~~p~~vQG~~a-~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -.+||+|+..+- .+=.||-+.+-. .+.. .+.+-++.+.+-.. ..++..|.+.+... .+|+|+.+-=-|| T Consensus 6 r~rIGlIvPstn~tiE~E~~~l~PGV~~h~sRi~~~~vt~e~l~~m~~~l~~Aa~~L~~a-------~~DvVvygCTSgS 78 (145) T 3ixl_A 6 TPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQ-------GAAVVSLMCTSLS 78 (145) T ss_dssp CCEEEEEESSTTCCCCTHHHHHCTTSCEEEEECCCCCSSHHHHHHHGGGHHHHHHHHHHT-------TEEEEEECCHHHH T ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-------CCCEEEECCCHHH T ss_conf 980689978988614699998658986672347789989789999999999999986147-------9999998474798 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 444220076999999974890488520 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgI 247 (529) +-.=+.++.+.+.+--....+|++|.. T Consensus 79 ~v~G~~~~~~l~~~l~~~~g~pv~t~~ 105 (145) T 3ixl_A 79 FYRGAAFNAALTVAMREATGLPCTTMS 105 (145) T ss_dssp HTTCHHHHHHHHHHHHHHHSSCEEEHH T ss_pred HHCCCHHHHHHHHHHHHCCCCCEECHH T ss_conf 751706899999998753699863679 No 160 >>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* (A:1-211) Probab=65.27 E-value=5 Score=19.79 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=41.0 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------CCCHHHHHHC-------------CH--HHHHHHHHHCCC Q ss_conf 1103679999999974100357677758999516-------8884442200-------------76--999999974890 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARG-------GGSIEDLWHF-------------ND--EMIVRAIANSSI 241 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG-------GGS~eDL~~F-------------N~--e~laraI~~~~i 241 (529) ..-..++..++..++...+ + .+||.+| ||....+..+ .+ ..+...+..||. T Consensus 35 ~~~~~~l~~~~~~~~~d~~------v-~~vvl~g~g~~f~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 107 (211) T 2j5i_A 35 PTLNREMIDVLETLEQDPA------A-GVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAK 107 (211) T ss_dssp HHHHHHHHHHHHHHHTCTT------E-EEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSS T ss_pred HHHHHHHHHHHHHHHHCCC------C-EEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999973999------5-29999645432112102788864012340355543345677899999986278 Q ss_pred EEEEEEC-CCC-CCHHHHHHHCCCCCCCHH Q ss_conf 4885205-777-525898864123777214 Q gi|254780791|r 242 PIISAIG-HET-DWTLADYAADLRAPTPTG 269 (529) Q Consensus 242 PVisgIG-HE~-D~Tl~D~VAD~Ra~TPTa 269 (529) |||++|- |=. ==...=+.+|.|..+.++ T Consensus 108 p~Ia~v~G~a~GgG~~la~~~D~~ia~~~a 137 (211) T 2j5i_A 108 PTIAMVNGWCFGGGFSPLVACDLAICADEA 137 (211) T ss_dssp CEEEEECSCEEGGGHHHHHHSSEEEEETTC T ss_pred CEEEECCCCCCCCCCCCCCCCCCCEECCCC T ss_conf 779845887655444000245400565787 No 161 >>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} (A:) Probab=65.19 E-value=8.5 Score=17.76 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=25.9 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 1036799999999741003576777589995168-884442200769999999748904885 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVis 245 (529) .....|++..+.. ++|+||+++-| +.++.. .|. -..-+-+-.++.||+. T Consensus 107 ~~~~~I~~~a~~~----------~~dliVlG~~~~~~~~~~-~~G-s~~~~il~~~~~pVlv 156 (162) T 1mjh_A 107 IPHEEIVKIAEDE----------GVDIIIMGSHGKTNLKEI-LLG-SVTENVIKKSNKPVLV 156 (162) T ss_dssp CHHHHHHHHHHHT----------TCSEEEEESCCSSCCTTC-SSC-HHHHHHHHHCCSCEEE T ss_pred CHHHHHHHHHHCC----------CCCEEEEECCCCCCCCCC-CCC-CHHHHHHHCCCCCEEE T ss_conf 6899998886315----------678799806899865446-107-4999999618998999 No 162 >>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A (A:1-128) Probab=65.17 E-value=8.6 Score=17.70 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=48.3 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) +||-||-. .....+.+..+-..|++++....+. -.|+..++.. .||+||+= -+|- T Consensus 1 krILiVDd--~~~~~~~l~~~l~~~g~~v~~a~s~----------~~al~~l~~~-------~~dliilD------~~lp 55 (128) T 3dzd_A 1 KRVLVVDD--EESITSSLSAILEEEGYHPDTAKTL----------REAEKKIKEL-------FFPVIVLD------VWXP 55 (128) T ss_dssp CEEEEECS--CHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHHHHHB-------CCSEEEEE------SEET T ss_pred CEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHC-------CCCEEEEE------CCCC T ss_conf 96999928--9999999999999779989997999----------9999998717-------99999997------9899 Q ss_pred HCCHHHHHHHHHHC--CCE--EEEEECCCCC Q ss_conf 00769999999748--904--8852057775 Q gi|254780791|r 226 HFNDEMIVRAIANS--SIP--IISAIGHETD 252 (529) Q Consensus 226 ~FN~e~laraI~~~--~iP--VisgIGHE~D 252 (529) -.|-.++++.|.+. .+| |+||.|...+ T Consensus 56 ~~dG~el~~~ir~~~~~~piivlt~~~~~~~ 86 (128) T 3dzd_A 56 DGDGVNFIDFIKENSPDSVVIVITGHGSVDT 86 (128) T ss_dssp TEETTTHHHHHHHHCTTCEEEEEECSSCCHH T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 9999999999996399875445567799999 No 163 >>1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} (A:) Probab=65.13 E-value=8.6 Score=17.70 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=6.3 Q ss_pred CCCCCCCCEEEEEEC Q ss_conf 631026528999847 Q gi|254780791|r 139 NPIPFIPKIIAVITS 153 (529) Q Consensus 139 ~~lP~~p~~i~vits 153 (529) +.+...|++||||-- T Consensus 12 ~~l~kiP~HiavImd 26 (253) T 1ueh_A 12 KLPAHGCRHVAIIMD 26 (253) T ss_dssp -CCTTCCCEEEEECC T ss_pred HCCCCCCCEEEEECC T ss_conf 268899988999534 No 164 >>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} (A:) Probab=64.89 E-value=8.7 Score=17.66 Aligned_cols=92 Identities=10% Similarity=-0.044 Sum_probs=67.6 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 99997654012261001631026528999847842589999998630597589997210011110367999999997410 Q gi|254780791|r 122 KRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLK 201 (529) Q Consensus 122 ~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~ 201 (529) .+-++|.++|.- -++++.+.....+....+....+..+..+++-+.-+.+...+++++... T Consensus 24 aiA~~la~~G~~---------------V~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---- 84 (260) T 2ae2_A 24 GIVEELASLGAS---------------VYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHF---- 84 (260) T ss_dssp HHHHHHHHTTCE---------------EEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHT---- T ss_pred HHHHHHHHCCCE---------------EEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHH---- T ss_conf 999999987999---------------9999799899999999987358975489902799999999999999985---- Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH Q ss_conf 03576777589995168884442200769999999 Q gi|254780791|r 202 EGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 (529) Q Consensus 202 ~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI 236 (529) ...+|++|-.=|.+....++-+++++.-+.+ T Consensus 85 ----~g~idilvnnAG~~~~~~~~~~~~~~~~~~~ 115 (260) T 2ae2_A 85 ----HGKLNILVNNAGIVIYKEAKDYTVEDYSLIM 115 (260) T ss_dssp ----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHH T ss_pred ----CCCCEEEECCCCCCCCCCCCCCCHHHHHHHH T ss_conf ----8983798636534457763559999999999 No 165 >>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:1-117,A:253-287) Probab=64.67 E-value=8.8 Score=17.63 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=59.3 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ..+||||.+. +.--+.++++.+.. ..++.+.++++.- .+....++++.+... ++|.||+.-.--. T Consensus 5 s~~Igviip~~~n~~~~~ii~gi~~~a~~~Gy~lii~~~~~----d~~~~~~~i~~l~~~-------~vDGIIi~~~~~~ 73 (152) T 2rjo_A 5 QTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEG----SSEKGIADIRALLQK-------TGGNLVLNVDPND 73 (152) T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTT----CHHHHHHHHHHHHHH-------TTTCEEEEECCSS T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEECCCCC T ss_conf 96899994888888999999999999997299899993899----999999999999965-------9998999836642 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 4442200769999999748904885205777 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHET 251 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~ 251 (529) -+++ ..+.+.+.+..||||.-=.... T Consensus 74 ~~~~-----~~~i~~l~~~gIPvV~id~~~~ 99 (152) T 2rjo_A 74 SADA-----RVIVEACSKAGAYVTTIWNKPK 99 (152) T ss_dssp HHHH-----HHHHHHHHHHTCEEEEESCCCT T ss_pred CCCH-----HHHHHHHHHCCCEEEEECCCCC T ss_conf 1001-----4778899973987898415565 No 166 >>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} (X:1-164,X:285-324) Probab=64.53 E-value=8.8 Score=17.61 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=62.5 Q ss_pred CCCCCCCCCCCCC-CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE-ECC-----------CCCCCHHHHHHHHHHHHH Q ss_conf 2261001631026-528999847842589999998630597589997-210-----------011110367999999997 Q gi|254780791|r 132 LFSDQHKNPIPFI-PKIIAVITSPTGAVIRDILQRISCRFPLRVIIF-PVK-----------VQGDECPKEIANAILQLN 198 (529) Q Consensus 132 lfd~~~k~~lP~~-p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~-p~~-----------vQG~~a~~~i~~ai~~~~ 198 (529) .|..+++...|.+ .+.|+.+=-+.|-==+==-.+...+-+..++.+ |.. +-+-+..+++......++ T Consensus 22 ~lk~~~~~~~~~L~gK~iallF~epSTRTR~SFe~A~~~LGg~vi~l~~~~ss~~~e~~~~~~~~~~kgEsi~DTarvLs 101 (204) T 1js1_X 22 EIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMG 101 (204) T ss_dssp HHHHSTTTTTTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHH T ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99737455654469988999967897007999999999859959971788763202345430003777763999999998 Q ss_pred HHCCCCCCCCCCEEEEECCCCCHHH-HHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHH Q ss_conf 4100357677758999516888444-220076999999974890488520577--7525898864 Q gi|254780791|r 199 TLKEGRTCPRPDIIILARGGGSIED-LWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYAA 260 (529) Q Consensus 199 ~~~~~~~~~~~D~iii~RGGGS~eD-L~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~VA 260 (529) .+ +| +|++|+-..-.+ ....++..+-.-.-.+++|||.|-|-. .=-.|+|+-. T Consensus 102 ~y--------~D-~iviR~~~~g~~~~~~~~~~~i~e~a~~s~vPVINg~~~~~HPtQaLaDl~T 157 (204) T 1js1_X 102 CY--------CD-IIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLIT 157 (204) T ss_dssp HT--------CS-EEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHH T ss_pred HH--------CC-EEEEEECCHHHHHHHCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH T ss_conf 61--------74-2589722203444420005799999985278522688876675999999999 No 167 >>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:1-128) Probab=64.17 E-value=8.7 Score=17.65 Aligned_cols=83 Identities=24% Similarity=0.355 Sum_probs=45.3 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 528999847842589999998630597-5899972100111103679999999974100357677758999516888444 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) |-+|-||- +-.....+++.+-..++ ..+. - .+.+-..|++.+... .||+||+ | T Consensus 5 ~~~vLiVD--D~~~~~~~l~~~L~~~~~~~~v--~-------~a~~~~~a~~~~~~~-------~~dliil--------D 58 (128) T 1a04_A 5 PATILLID--DHPMLRTGVKQLISMAPDITVV--G-------EASNGEQGIELAESL-------DPDLILL--------D 58 (128) T ss_dssp CEEEEEEC--SCHHHHHHHHHHHTTCTTEEEE--E-------EESSHHHHHHHHHHH-------CCSEEEE--------E T ss_pred CCEEEEEE--CCHHHHHHHHHHHHHCCCCEEE--E-------EECCHHHHHHHHHHC-------CCEEEEE--------E T ss_conf 87899996--9999999999999868991899--9-------979999999999856-------9828997--------3 Q ss_pred HH--HCCHHHHHHHHHH----CCCEEEEEECCCCCC Q ss_conf 22--0076999999974----890488520577752 Q gi|254780791|r 224 LW--HFNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529) Q Consensus 224 L~--~FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529) +. ..|-.++++.|-+ +|++++|+-+.+.+. T Consensus 59 ~~lP~~~G~el~~~i~~~~~~~~iiilt~~~~~~~~ 94 (128) T 1a04_A 59 LNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDV 94 (128) T ss_dssp TTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 247743222222222223345664345677999999 No 168 >>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} (A:) Probab=64.16 E-value=8.9 Score=17.56 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=50.3 Q ss_pred HHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH Q ss_conf 999999863---05975899972100111103679999999974100357677758999516888444220076999999 Q gi|254780791|r 159 IRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529) Q Consensus 159 ~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529) +.|+...++ ....+++..|-+=.-| +|+..|..+-. ..+|.|||==|| |.+-...+..| T Consensus 26 l~~i~~~~~~~a~~~g~~v~~~QSN~EG-----elid~i~~a~~-------~~~dgiIiNpaa------~ThtSvAl~DA 87 (149) T 2uyg_A 26 LEELEALCEAWGAELGLGVVFRQTNYEG-----QLIEWVQQAHQ-------EGFLAIVLNPGA------LTHYSYALLDA 87 (149) T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCHH-----HHHHHHHHTTT-------TTCSEEEEECGG------GGGTCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEHHHHHHH-----HHHHHHHHHCC-------CCEEEEEECCCH------HEEECHHHHHH T ss_conf 9999999999999739705544665699-----99999998334-------660379862640------01310327889 Q ss_pred HHHCCCEEEE Q ss_conf 9748904885 Q gi|254780791|r 236 IANSSIPIIS 245 (529) Q Consensus 236 I~~~~iPVis 245 (529) +..+++|+|- T Consensus 88 l~~~~~P~VE 97 (149) T 2uyg_A 88 IRAQPLPVVE 97 (149) T ss_dssp HHTSCSCEEE T ss_pred HHHCCCCEEE T ss_conf 9863997899 No 169 >>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:1-109,A:256-284) Probab=64.06 E-value=9 Score=17.54 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=60.8 Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 528999847-842589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) +++||||.+ .+..-+..++.-+.+ +.++.+++ ...+-..+..+.|+.+... ++|.|||+-.++. T Consensus 2 t~~Igvii~~~~n~f~~~i~~gi~~~a~~~g~~vi~-----~~~~~~~~~~~~i~~li~~-------~vDGIIi~~~~~~ 69 (138) T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-----IAVPDGEKTLNAIDSLAAS-------GAKGFVICTPDPK 69 (138) T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEE-----EECCSHHHHHHHHHHHHHT-------TCCEEEEECSCGG T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE-----ECCCCHHHHHHHHHHHHHC-------CCCEEEEECCCCC T ss_conf 809999979998989999999999999972999999-----8599999999999999975-------9998998053234 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH Q ss_conf 4442200769999999748904885205777525898864 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA 260 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529) . ....+..+.+..||||+==.+-.+.-...+++ T Consensus 70 ~-------~~~~i~~l~~~gIPvV~id~~~~~~~~~~v~~ 102 (138) T 8abp_A 70 L-------GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 102 (138) T ss_dssp G-------HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTT T ss_pred C-------CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC T ss_conf 5-------58999999973998899954543444344676 No 170 >>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:1-108,A:245-290) Probab=63.92 E-value=9 Score=17.52 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=63.1 Q ss_pred CCEEEEEECCCH-HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 528999847842-589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSPTG-AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~~~-a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ..+||||.+..+ .-+.+++.-+.+ ..+++++++. +++..+....++|+.+-.. ++|.||++-...+ T Consensus 4 s~tIGVivp~~~~pf~~~i~~Gie~aa~~~Gy~vil~~---~s~~d~~~q~~~ie~li~q-------~VDGIIi~~~d~~ 73 (154) T 3d02_A 4 EKTVVNISKVDGXPWFNRXGEGVVQAGKEFNLNASQVG---PSSTDAPQQVKIIEDLIAR-------KVDAITIVPNDAN 73 (154) T ss_dssp CEEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC---CSSSCHHHHHHHHHHHHHT-------TCSEEEECCSCHH T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEE---CCCCCHHHHHHHHHHHHHC-------CCCEEEEECCCCC T ss_conf 88899997889997999999999999997499899997---8999999999999999975-------9998999425841 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC Q ss_conf 44422007699999997489048852057775258988641 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529) ......+.+.+..|||+.-=+=-.+....++|.| T Consensus 74 -------~~~~~i~~l~~~gIpvV~id~~~~~~~~~~~v~d 107 (154) T 3d02_A 74 -------VLEPVFKKARDAGIVVLTNESPGQPSANWDVEII 107 (154) T ss_dssp -------HHHHHHHHHHHTTCEEEEESCTTCTTCSEEEESS T ss_pred -------HHHHHHHHHHHCCCCEEECCCCCCCCCCCEEEEE T ss_conf -------1048999999769958844788887777409985 No 171 >>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A (A:1-245) Probab=63.71 E-value=9.1 Score=17.49 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=41.8 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHH---------------HHC--CHHHHHHHHHHCCCE Q ss_conf 111036799999999741003576777589995168884---442---------------200--769999999748904 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDL---------------WHF--NDEMIVRAIANSSIP 242 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL---------------~~F--N~e~laraI~~~~iP 242 (529) ......+|..++..++... .=+||+.-+|+++ -|| +.| .-..+..++..||.| T Consensus 31 ~~~~~~el~~al~~~~~d~-------~~~vvl~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 103 (245) T 2gtr_A 31 NPEVMREVQSALSTAAADD-------SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKP 103 (245) T ss_dssp CHHHHHHHHHHHHHHHHSS-------CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC T ss_pred CHHHHHHHHHHHHHHHCCC-------CEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999986499-------779999566422223543231101122332035677777653001333210011 Q ss_pred EEEEE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 88520-577752-5898864123777214 Q gi|254780791|r 243 IISAI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 243 VisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) +|++| ||=.-- ...=+.+|+|..++.+ T Consensus 104 ~Iaav~G~a~ggG~~l~~~~D~~ia~~~a 132 (245) T 2gtr_A 104 IIVAVNGPAIGLGASILPLCDVVWANEKA 132 (245) T ss_dssp EEEEECSCEETHHHHTGGGSSEEEEETTC T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 22013322334454320003453576754 No 172 >>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306) Probab=63.65 E-value=9.1 Score=17.48 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=68.3 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEE----------------EECCCCC----------------CCHH Q ss_conf 65289998478-42589999998630---59758999----------------7210011----------------1103 Q gi|254780791|r 144 IPKIIAVITSP-TGAVIRDILQRISC---RFPLRVII----------------FPVKVQG----------------DECP 187 (529) Q Consensus 144 ~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~----------------~p~~vQG----------------~~a~ 187 (529) ..+||||+||- .+.++...++-+-+ +...+|+- -+-.|.| ...+ T Consensus 1 m~krI~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~~~~ 80 (185) T 1pfk_A 1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (185) T ss_dssp CCCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCCH T ss_conf 98649998658886778999999999998779999999166788727986868999997798579972247788866657 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC Q ss_conf 67999999997410035767775899951688844422007699999997489048852057775258988641237772 Q gi|254780791|r 188 KEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267 (529) Q Consensus 188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP 267 (529) +..-++++.+.+.. .|.+|++=|-||.. -|..+++..|||| ||-.-+|- |+-=-|| T Consensus 81 ~~~~~~~~~l~~~~-------Id~LivIGGdgS~~---------~a~~L~e~gi~vv-giPkTIDN-------Di~GG~P 136 (185) T 1pfk_A 81 NIRAVAIENLKKRG-------IDALVVIGGDGSYM---------GAMRLTEMGFPCI-GLPGTIDN-------DIKGGSP 136 (185) T ss_dssp HHHHHHHHHHHHTT-------CCEEEEEECHHHHH---------HHHHHHHTTCCEE-EEEBCTTC-------CCTCSCC T ss_pred HHHHHHHHHHHHCC-------CCEEEEECCCHHHH---------HHHHHHHCCCCEE-EEEEEECC-------CCCCCCC T ss_conf 78889999999769-------98899936936899---------9999764367433-12112227-------9988999 Q ss_pred HHH Q ss_conf 145 Q gi|254780791|r 268 TGA 270 (529) Q Consensus 268 TaA 270 (529) ||- T Consensus 137 ta~ 139 (185) T 1pfk_A 137 VPY 139 (185) T ss_dssp CHH T ss_pred CHH T ss_conf 989 No 173 >>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} (A:1-99,A:305-326) Probab=63.00 E-value=6.3 Score=18.93 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=26.0 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 8999721001111036799999999741003576777589995168884 Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) .++++|..+ ++|.+.++.+++ .++-+++||||+- T Consensus 50 ~avV~P~s~------eeV~~iv~~a~~---------~~ipv~~rGgGts 83 (121) T 1hsk_A 50 DFYITPTKN------EEVQAVVKYAYQ---------NEIPVTYLGNGSN 83 (121) T ss_dssp EEEECCSSH------HHHHHHHHHHHH---------TTCCEEEESSCSS T ss_pred EEEEEECCH------HHHHHHHHHHHH---------CCCCEEEECCCEE T ss_conf 899976999------999999999987---------5998899858436 No 174 >>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} (A:247-509) Probab=62.67 E-value=9.4 Score=17.35 Aligned_cols=82 Identities=18% Similarity=0.075 Sum_probs=46.0 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-----HHHHHHC-------------CHHHHHHHHHHCCCEE Q ss_conf 111103679999999974100357677758999516888-----4442200-------------7699999997489048 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-----IEDLWHF-------------NDEMIVRAIANSSIPI 243 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-----~eDL~~F-------------N~e~laraI~~~~iPV 243 (529) ..-....+|..++..+..... .+- +||.+|.|. --|++.+ .-..+.+.+..+|.|| T Consensus 59 ~~~~~~~~l~~~l~~~~~~~~-----~v~-~vil~g~g~~~fs~G~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ 132 (263) T 2w3p_A 59 WPLKFAREFDDAILSMRTNEL-----AVG-TWVFRTEGDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSL 132 (263) T ss_dssp HHHHHHHHHHHHHHHHHHHCS-----SCC-EEEEEEESCHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEE T ss_pred CHHHHHHHHHHHHHHHCCCCH-----HHE-EEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 578899977789998336741-----010-67773478899999999998708654899999999999999885176116 Q ss_pred EEEE-CCCCC---CHHHHHHHCCCCCCCHH Q ss_conf 8520-57775---25898864123777214 Q gi|254780791|r 244 ISAI-GHETD---WTLADYAADLRAPTPTG 269 (529) Q Consensus 244 isgI-GHE~D---~Tl~D~VAD~Ra~TPTa 269 (529) |++| ||-.= -..+-+.+|.|..++.+ T Consensus 133 ia~i~G~a~g~g~g~~la~~~D~~ia~~~a 162 (263) T 2w3p_A 133 FALIEPGSCFAGTFAELAFAADRTYMAALP 162 (263) T ss_dssp EEEECTTCCEEGGGHHHHHTSSEEEECCCT T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 999638961010799999971399986178 No 175 >>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940} (A:48-106) Probab=62.50 E-value=6.9 Score=18.55 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=26.5 Q ss_pred CCCEEEEECCCCCEECCHHHCCCCCEEEEEEECE Q ss_conf 1461999848988957778929998699999110 Q gi|254780791|r 459 KRGYTSIQDTNNNFITQKRNLATKTRILINFFDG 492 (529) Q Consensus 459 ~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG 492 (529) .|||.-+++++|++|+. .+...++.+.+-..|| T Consensus 1 ~~~yvRItd~dGqVIt~-~~~~~~~~~~~L~~eg 33 (59) T 3fn2_A 1 GRGYVRITDKDGQVITY-EDGSVQDKTVFLTNEG 33 (59) T ss_dssp TTCEEEEECTTSCBCSC-CCSCSTTEEEEEEECS T ss_pred CCCEEEEECCCCCEEEC-CCCCCCCEEEEEECCC T ss_conf 52348885699888834-9987651588862257 No 176 >>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} (A:) Probab=62.25 E-value=9.6 Score=17.29 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=29.2 Q ss_pred HHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 86305975-8999721001111036799999999741003576777589995168884 Q gi|254780791|r 165 RISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 165 ~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) .+++.+++ .++||.+...|+..+.| .+|++|+..++... T Consensus 26 ~~~~~~~i~~i~LfGS~ArG~~~~~S------------------DiDl~Vi~~~~~~~ 65 (111) T 2rff_A 26 VASSFPNLEEVYIFGSRARGDYLDTS------------------DIDILFVFKGIKEX 65 (111) T ss_dssp HHHHCTTEEEEEEESHHHHSCCCTTC------------------CEEEEEEESSCTTC T ss_pred HHHHCCCEEEEEEECCCCCCCCCCCC------------------CEEEEEEECCCCCC T ss_conf 99876880399998710359989999------------------83899997898753 No 177 >>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} (A:) Probab=62.24 E-value=9.6 Score=17.29 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=60.5 Q ss_pred HHHHHHHH--HHCCCEEEEEEE----CCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH Q ss_conf 99999986--305975899972----1001-1110367999999997410035767775899951688844422007699 Q gi|254780791|r 159 IRDILQRI--SCRFPLRVIIFP----VKVQ-GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM 231 (529) Q Consensus 159 ~~D~~~~~--~~r~p~~~~~~p----~~vQ-G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529) +.++.+.. .+++++.+++.+ ..+- .+.++..|..+.+.+.... +|.|-+ --||+....|.-+-+. T Consensus 141 ~~~i~~v~~~~~~~g~~vile~i~~~~~~~d~~~~~~~i~~a~~~a~e~G-------aD~iKt-~~~~~~~~~~~~~v~~ 212 (304) T 1to3_A 141 LNXVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSG-------ADLYKV-EXPLYGKGARSDLLTA 212 (304) T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSS-------CSEEEE-CCGGGGCSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC-------CEEEEE-ECCCCCHHHHHHHHHH T ss_conf 99999999999873997389873147776765540889999999876439-------769994-0787604566789999 Q ss_pred HHHHHHHCCCEEEEEECCCCCCHHHHHHHC Q ss_conf 999997489048852057775258988641 Q gi|254780791|r 232 IVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529) Q Consensus 232 laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529) +.+.+..|++||+.+=|=-++.....++.+ T Consensus 213 ~~~~~~~~~~pv~vaGG~~~~~~~~~~i~~ 242 (304) T 1to3_A 213 SQRLNGHINXPWVILSSGVDEKLFPRAVRV 242 (304) T ss_dssp HHHHHHTCCSCEEECCTTSCTTTHHHHHHH T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHH T ss_conf 999872589968999289898999999999 No 178 >>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} (A:) Probab=62.01 E-value=9.7 Score=17.26 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=54.4 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC--CCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC--HHHH Q ss_conf 1111036799999999741003576777589995168--88444220076999999974890488520577752--5898 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG--GSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW--TLAD 257 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG--GS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~--Tl~D 257 (529) -|-..+.++..++.. .+|.|.+...+ ++....+.-+.+.+.+....+++||+.+=|=.++. -+.+ T Consensus 113 ~~~~t~~e~~~a~~~-----------g~d~i~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ipi~~~GGi~~~~i~~~~~ 181 (215) T 1xi3_A 113 ASVYSLEEALEAEKK-----------GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGINKDNAREVLK 181 (215) T ss_dssp EEESSHHHHHHHHHH-----------TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHHT T ss_pred CCCCCHHHHHHHHHC-----------CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH T ss_conf 454509999988745-----------977898601322566555532226888888872578816766899999999998 Q ss_pred HHHC--------CCCCCCHHHHHH Q ss_conf 8641--------237772145676 Q gi|254780791|r 258 YAAD--------LRAPTPTGAAEM 273 (529) Q Consensus 258 ~VAD--------~Ra~TPTaAAEl 273 (529) .-|| .+++.|.++++. T Consensus 182 ~GadgV~vGsai~~~~dp~~~~~~ 205 (215) T 1xi3_A 182 TGVDGIAVISAVMGAEDVRKATEE 205 (215) T ss_dssp TTCSEEEESHHHHTSSSHHHHHHH T ss_pred HCCCEEEEHHHHHCCCCHHHHHHH T ss_conf 199899973997779999999999 No 179 >>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A (A:) Probab=61.75 E-value=9.8 Score=17.22 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=47.5 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-------------HHH--HHCCHHHHHHHHHHCCCEEEEE Q ss_conf 1111036799999999741003576777589995168884-------------442--2007699999997489048852 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-------------EDL--WHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-------------eDL--~~FN~e~laraI~~~~iPVisg 246 (529) -...-..++..+++.+.... ..-+||+.-||... ++. +.-.-..+...+..||.|+|++ T Consensus 24 ~s~~~~~~l~~~l~~~~~~~------~~~~Vv~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkp~Iaa 97 (254) T 3gow_A 24 ITGELLDALYAALKEGEEDR------EVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVA 97 (254) T ss_dssp BCHHHHHHHHHHHHHHHHCT------TCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEE T ss_pred CCHHHHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 99999999999999998688------958999954777642111024322565311001124688889986389975999 Q ss_pred E-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 0-577752-5898864123777214 Q gi|254780791|r 247 I-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 247 I-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) | ||=.-- ...=+.+|.|..|+++ T Consensus 98 i~G~a~GgG~~la~~~D~~ia~~~~ 122 (254) T 3gow_A 98 VNGVAAGAGMSLALWGDLRLAAVGA 122 (254) T ss_dssp ECSEEETHHHHHHTTCSEEEEETTC T ss_pred EEEEEEECEEEEEECCCCCEECCCC T ss_conf 9889988613510035400444887 No 180 >>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} (A:) Probab=61.62 E-value=9.8 Score=17.20 Aligned_cols=82 Identities=21% Similarity=0.118 Sum_probs=50.9 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH Q ss_conf 89998478425899999986305975899972100111103679999999974100357677758999516888444220 Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529) Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529) ||-||- +...+.+++...-..|++++.... +-..|+..+... .||+||+= -.|=- T Consensus 2 kVLiVd--Dd~~~~~~l~~~L~~~g~~v~~a~----------~~~~Al~~l~~~-------~~dliilD------~~lp~ 56 (121) T 2pl1_A 2 RVLVVE--DNALLRHHLKVQIQDAGHQVDDAE----------DAKEADYYLNEH-------IPDIAIVD------LGLPD 56 (121) T ss_dssp EEEEEC--SCHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEEC------SCCSS T ss_pred EEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CHHHHHHH------HCCCC T ss_conf 899996--799999999999998799999989----------889999988603-------20124354------02566 Q ss_pred CCHHHHHHHHHH----CCCEEEEEECCCCCC Q ss_conf 076999999974----890488520577752 Q gi|254780791|r 227 FNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529) Q Consensus 227 FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529) .|-.++++.|.. .|+||+++.+...|. T Consensus 57 ~dG~~~~~~lr~~~~~~~~iil~~~~~~~~~ 87 (121) T 2pl1_A 57 EDGLSLIRRWRSNDVSLPILVLTARESWQDK 87 (121) T ss_dssp SCHHHHHHHHHHTTCCSCEEEEESCCCHHHH T ss_pred CHHHHHHHHHHHCCCCCEEEEEECCCCHHHH T ss_conf 3378999999853977549999704999999 No 181 >>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A (A:) Probab=61.61 E-value=9.8 Score=17.20 Aligned_cols=52 Identities=17% Similarity=0.342 Sum_probs=33.6 Q ss_pred CHHHHHHHHHHHHHHCCCCEE--EEEEECCCCCCC-CCCEEEEEEECCCCEEEEEEECC Q ss_conf 299999999999740017189--999970543568-88627999874894799999735 Q gi|254780791|r 16 SVSELSYHLKHIVESNLSHVC--VRGEISGYRGIH-SSGHAYFSLKDNHSRIDAIIWKG 71 (529) Q Consensus 16 svs~l~~~i~~~l~~~~~~~~--v~gEis~~~~~~-~sGH~Yf~lkd~~a~i~~~~~~~ 71 (529) +-.++..+||..++..|+..| |+|.=-+..-.| ...++||.+. .+...+||+ T Consensus 47 ~~~diA~~IK~~~D~~yg~~WhcIVG~~Fgs~vth~~~~~i~f~~~----~~~ill~Kt 101 (102) T 1yo3_A 47 VEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIG----QVAILLFKS 101 (102) T ss_dssp SHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEET----TEEEEEEEC T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCEEEEEEC----CEEEEEEEC T ss_conf 6899999999975175498569998996679999769948999959----999999954 No 182 >>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} (A:14-156) Probab=61.60 E-value=9.8 Score=17.20 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=34.2 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 9721001111036799999999741003576777589995168-884442200769999999748904885 Q gi|254780791|r 176 IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 176 ~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVis 245 (529) .....+-|......|+...+.. .+|+||+++-| +..+-++.=..+.|+ -.+|.||+. T Consensus 84 ~~~~~~~~~~~~~~i~~~~~~~----------~~dliV~G~~~~~~~~~~lGs~~~~l~---~~~~~pVlv 141 (143) T 3fg9_A 84 EPLVYEGGDVDDVILEQVIPEF----------KPDLLVTGADTEFPHSKIAGAIGPRLA---RKAPISVIV 141 (143) T ss_dssp EEEEEECSCHHHHHHHTHHHHH----------CCSEEEEETTCCCTTSSSCSCHHHHHH---HHCSSEEEE T ss_pred EEEEEEECHHHHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCCCCHHHHHH---HHCCCCEEE T ss_conf 4799863004788751056874----------998999717899863333075999999---707998899 No 183 >>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} (A:) Probab=61.49 E-value=9.8 Score=17.19 Aligned_cols=88 Identities=20% Similarity=0.350 Sum_probs=60.8 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 02652899984784258999999863059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) |.-+++|-||-. .+.+..++...-.+|++++.... +-.+|++.+... .||+||+ T Consensus 4 ~l~~~~vLiVdd--~~~~~~~~~~~L~~~g~~v~~~~----------~~~~al~~l~~~-------~~dliil------- 57 (130) T 3eod_A 4 PLVGKQILIVED--EQVFRSLLDSWFSSLGATTVLAA----------DGVDALELLGGF-------TPDLMIC------- 57 (130) T ss_dssp TTTTCEEEEECS--CHHHHHHHHHHHHHTTCEEEEES----------CHHHHHHHHTTC-------CCSEEEE------- T ss_pred CCCCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEE------- T ss_conf 888998999949--89999999999998799999972----------277789998535-------6675651------- Q ss_pred HHHH--HCCHHHHHHHHHHC--CCEEEEEECCCCCCHHH Q ss_conf 4422--00769999999748--90488520577752589 Q gi|254780791|r 222 EDLW--HFNDEMIVRAIANS--SIPIISAIGHETDWTLA 256 (529) Q Consensus 222 eDL~--~FN~e~laraI~~~--~iPVisgIGHE~D~Tl~ 256 (529) |+. ..|-.++++.|-+. .+|||--.||....... T Consensus 58 -D~~lp~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~ 95 (130) T 3eod_A 58 -DIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIA 95 (130) T ss_dssp -CCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHH T ss_pred -ECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHH T ss_conf -01369998789999999838999699980899999999 No 184 >>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} (A:) Probab=61.17 E-value=10 Score=17.14 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=56.1 Q ss_pred CEEEEEECCC-------------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 2899984784-------------2589999998630---59758999721001111036799999999741003576777 Q gi|254780791|r 146 KIIAVITSPT-------------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 146 ~~i~vits~~-------------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) ++|-||-.|+ ..-+.|+...+++ ...+++..|-+=--| +|+..|..+. ..+ T Consensus 2 ~~IlvinGPNLn~LG~REp~iYG~~tl~~i~~~~~~~a~~lg~~i~~~QSN~EG-----elId~i~~a~--------~~~ 68 (154) T 1uqr_A 2 KKILLLNGPNLNMLGKREPHIYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEE-----SLINRIHQAF--------QNT 68 (154) T ss_dssp CEEEEEECTTGGGTTCSSGGGTTCCCHHHHHHHHHHHHHHTTCEEEEEECSSHH-----HHHHHHHHTT--------TTC T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-----HHHHHHHHHH--------CCC T ss_conf 779998188811057878975884589999999999998718731446776799-----9999999975--------287 Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 589995168884442200769999999748904885 Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) |.|||==|| |.+-+..+..|+..+++|+|- T Consensus 69 dgiIINpga------~ThtSiAl~DAl~~~~~P~VE 98 (154) T 1uqr_A 69 DFIIINPGA------FTHTSVAIRDALLAVSIPFIE 98 (154) T ss_dssp CEEEEECTT------HHHHCHHHHHHHHHHTCCEEE T ss_pred CEEEECCCC------EEEEHHHHHHHHHHCCCCEEE T ss_conf 625753654------054125589999872998899 No 185 >>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} (A:1-126) Probab=60.91 E-value=5.8 Score=19.23 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.9 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 899972100111103679999999974100357677758999516888 Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ..++||..+ .+|.+.++.+++ +++-|+.||||+ T Consensus 72 ~aVv~P~~~------~eV~~ivk~a~~---------~~i~v~~rggG~ 104 (126) T 1e8g_A 72 SAIVAPRNV------ADVQSIVGLANK---------FSFPLWPISIGR 104 (126) T ss_dssp SEEECCSSH------HHHHHHHHHHHH---------HTCCEEEESSCC T ss_pred CEEEECCCH------HHHHHHHHHHHH---------CCCCEEEECCCC T ss_conf 789966999------999999999998---------799389977998 No 186 >>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} (A:313-452) Probab=60.87 E-value=10 Score=17.10 Aligned_cols=85 Identities=7% Similarity=-0.005 Sum_probs=57.0 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC Q ss_conf 11036799999999741003576777589995168884442200769999999748904885205777525898864123 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR 263 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R 263 (529) ..-|.+|..+|+.+..... .=++|+=|..-..|......+.++++++...+-.+..+|.....-..-+.-..- T Consensus 22 ahnp~si~a~l~~l~~~~~-------~r~~ii~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 94 (140) T 1gg4_A 22 NANVGSXTAAVQVLAEXPG-------YRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEH 94 (140) T ss_dssp CCCHHHHHHHHHHHHHSSS-------EEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEEEEESSSTHHHHHHTTSCEE T ss_pred CCCHHHHHHHHHHHHHCCC-------CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEE T ss_conf 7986999999999986579-------826999665767750799999999999877999999978108988751887438 Q ss_pred CCCCHHHHHHHC Q ss_conf 777214567633 Q gi|254780791|r 264 APTPTGAAEMAV 275 (529) Q Consensus 264 a~TPTaAAElav 275 (529) +++++.|.+.+. T Consensus 95 ~~~~~~a~~~~~ 106 (140) T 1gg4_A 95 FADKTALITRLK 106 (140) T ss_dssp ESSHHHHHHHHH T ss_pred ECCHHHHHHHHH T ss_conf 589999999999 No 187 >>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:1-87) Probab=60.60 E-value=10 Score=17.07 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=24.6 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 97210011110367999999997410035767775899951688 Q gi|254780791|r 176 IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 176 ~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) ..|..|==-....+|.++++.+++ .++-|.+|||| T Consensus 28 ~~P~~vv~P~s~~eV~~iv~~a~~---------~~~~v~~rggG 62 (87) T 3js8_A 28 VDDVWTCAPRSADEVVKVANWAKD---------NGYKVRARGMM 62 (87) T ss_dssp EEEEEEECCSSHHHHHHHHHHHHH---------HTCEEEEECSC T ss_pred CCCCEEEECCCHHHHHHHHHHHHH---------CCCEEEEECCC T ss_conf 688889946999999999999998---------79809998999 No 188 >>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} (A:) Probab=60.19 E-value=10 Score=17.01 Aligned_cols=81 Identities=11% Similarity=-0.011 Sum_probs=55.8 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHH Q ss_conf 100111103679999999974100357677758999516888444220076999999974890488520577--752589 Q gi|254780791|r 179 VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLA 256 (529) Q Consensus 179 ~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~ 256 (529) --.-|......++++|..+...... +.=+|.|-=.||+.. .-..++.+|-.+++||++-+.+. .--+++ T Consensus 32 ~g~i~~~~~~~l~~~l~~a~~~~~~----~~I~L~InSpGG~v~-----~~~~i~~~i~~~~~~v~~~~~g~aaSaa~~i 102 (193) T 1yg6_A 32 TGQVEDHMANLIVAQMLFLEAENPE----KDIYLYINSPGGVIT-----AGMSIYDTMQFIKPDVSTICMGQAASMGAFL 102 (193) T ss_dssp ESSBCHHHHHHHHHHHHHHHHHCSS----SCEEEEEEECCBCHH-----HHHHHHHHHHHSSSCEEEEEEEEEETHHHHH T ss_pred CCEECHHHHHHHHHHHHHHHHCCCC----CCEEEEEECCCCCHH-----HHHHHHHHHHHCCCCEEEEEEEEEHHHHHHH T ss_conf 9886578899999999999814998----886999518997088-----8999999984279988999998717768999 Q ss_pred HHHHCCCCCCCH Q ss_conf 886412377721 Q gi|254780791|r 257 DYAADLRAPTPT 268 (529) Q Consensus 257 D~VAD~Ra~TPT 268 (529) =.++|.+...|. T Consensus 103 ~~a~~~~~~~~~ 114 (193) T 1yg6_A 103 LTAGAKGKRFCL 114 (193) T ss_dssp HHTSCTTCEEEC T ss_pred HHCCCCCCEECC T ss_conf 962788874218 No 189 >>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:1-110,A:243-288) Probab=60.05 E-value=10 Score=16.99 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=59.4 Q ss_pred CEEEEEECCCH---HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 28999847842---589999998630---597589997210011110367999999997410035767775899951688 Q gi|254780791|r 146 KIIAVITSPTG---AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 146 ~~i~vits~~~---a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) +.||||.+.-+ .-+..+++-+.+ +..+.++++.+.-.- ......++.+... ++|.|||.=+ T Consensus 9 ~~IgVIvp~l~~~~Pf~s~ii~gI~~~a~~~Gy~lil~~~~~~~----e~~~~~l~~l~~~-------~VDGIIi~~~-- 75 (156) T 3gv0_A 9 NVIALVLSVDEELXGFTSQXVFGITEVLSTTQYHLVVTPHIHAK----DSXVPIRYILETG-------SADGVIISKI-- 75 (156) T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGG----GTTHHHHHHHHHT-------CCSEEEEESC-- T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHCC-------CCCEEEEECC-- T ss_conf 97999937676678599999999999999869989999689996----9999999998638-------9777987402-- Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 8444220076999999974890488520577752589886 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ..+......+....+|+|. |+...+-.-.++| T Consensus 76 -------~~~~~~l~~l~~~~iPvVl-id~~~~~~~~~~V 107 (156) T 3gv0_A 76 -------EPNDPRVRFXTERNXPFVT-HGRSDXGIEHAFH 107 (156) T ss_dssp -------CTTCHHHHHHHHTTCCEEE-ESCCCSSCCCEEE T ss_pred -------CCCHHHHHHHHHCCCCCEE-CCCCCCCCCCCEE T ss_conf -------3321677877751497220-0113579987668 No 190 >>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} (A:) Probab=59.85 E-value=10 Score=16.97 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=54.6 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 31026528999847842589999998630597589997210011110367999999997410035767775899951688 Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) .-..-|.+|-||- +-..+..++...-..+++++..+... ..|++.+... ..||+||+ T Consensus 10 ~~~~~~~rILiVd--Dd~~~~~~i~~~L~~~g~~v~~a~~g----------~~al~~~~~~------~~~Dliil----- 66 (138) T 2b4a_A 10 HHHMQPFRVTLVE--DEPSHATLIQYHLNQLGAEVTVHPSG----------SAFFQHRSQL------STCDLLIV----- 66 (138) T ss_dssp ----CCCEEEEEC--SCHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHTGGGG------GSCSEEEE----- T ss_pred CCCCCCCEEEEEE--CCHHHHHHHHHHHHHCCCEEEECCCH----------HHHHHHHHCC------CCCCEEEE----- T ss_conf 0476788799996--99999999999999869989744999----------9999999646------99979998----- Q ss_pred CHHHH--HHCCHHHHHHHHHH--CCCE--EEEEECCCCCCH Q ss_conf 84442--20076999999974--8904--885205777525 Q gi|254780791|r 220 SIEDL--WHFNDEMIVRAIAN--SSIP--IISAIGHETDWT 254 (529) Q Consensus 220 S~eDL--~~FN~e~laraI~~--~~iP--VisgIGHE~D~T 254 (529) |+ =-.|-.++++.|-+ ..+| ++||.+++.+.. T Consensus 67 ---D~~mP~~~G~el~~~ir~~~~~~pii~lTa~~~~~~~~ 104 (138) T 2b4a_A 67 ---SDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIES 104 (138) T ss_dssp ---ETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCCC T ss_pred ---ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHH T ss_conf ---37777885799999999709989789998885399998 No 191 >>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} (D:1-193) Probab=59.38 E-value=11 Score=16.91 Aligned_cols=75 Identities=13% Similarity=0.036 Sum_probs=53.4 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH--- Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844--- Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE--- 222 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e--- 222 (529) -+||||.-+..-..+++.+.++... +++.+++..- ....+|.||+.=|+++.. T Consensus 3 ~~I~ii~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-----------------------~l~~~d~lil~Gg~~~~~~~~ 58 (193) T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEING-FEPSYVGLDD-----------------------KLDDYELIILPGGFSYGDYLR 58 (193) T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTT-CEEEEECTTC-----------------------CCSSCSEEEECEECGGGGCSS T ss_pred CEEEEEECCCCCHHHHHHHHHHHCC-CEEEEEECHH-----------------------HHHHCCEEEECCCCCHHHHHH T ss_conf 6599992288182999999999869-9289984733-----------------------340287899789764088899 Q ss_pred ---HHHHCCHHHHHHHHHHCCCEEE Q ss_conf ---4220076999999974890488 Q gi|254780791|r 223 ---DLWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 223 ---DL~~FN~e~laraI~~~~iPVi 244 (529) .+|--......|..++...||+ T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~pil 83 (193) T 3d54_D 59 PGAVAAREKIAFEIAKAAERGKLIM 83 (193) T ss_dssp TTHHHHTSTTHHHHHHHHHHTCEEE T ss_pred HHHHHCHHHHHHHHHHHHHCCCCEE T ss_conf 8877430146689999874698579 No 192 >>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:1-116,A:250-289) Probab=58.91 E-value=11 Score=16.84 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=56.3 Q ss_pred CCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 65289998478-42589999998630---597589997210011110367999999997410035767775899951688 Q gi|254780791|r 144 IPKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 144 ~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) =...|||+... ++--+.+++.-+.. .+++.++++++.-.. .....+|+.+... .+|.||+.=.. T Consensus 15 ~s~~Igvi~~~~~~~~~~~i~~~i~~~~~~~g~~~~i~~~~~~~----~~~~~~i~~~~~~-------~vdGiIi~~~~- 82 (156) T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNM----EKELHLLNTMLGK-------QVDGIVFMGGN- 82 (156) T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCH----HHHHHHHHHHHHT-------TCSEEEECCSC- T ss_pred HHCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH----HHHHHHHHHHHHC-------CCCCCEEECCC- T ss_conf 35999999688879899999999999999869989999789997----9999999999855-------98740110013- Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 8444220076999999974890488520 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgI 247 (529) .+....+......+|||.-= T Consensus 83 --------~~~~~~~~l~~~~iPvV~i~ 102 (156) T 2fep_A 83 --------ITDEHVAEFKRSPVPIVLAA 102 (156) T ss_dssp --------CCHHHHHHHHHSSSCEEEES T ss_pred --------CCHHHHHHHHCCCCCCCCCC T ss_conf --------43276764312222233333 No 193 >>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} (A:1-204) Probab=58.66 E-value=11 Score=16.81 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=51.5 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 02652899984784258999999863059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) |.-+.+|+||-..++- .+-+.+.+.. .+..+.++|......... . ..+|.+||.=|+|+. T Consensus 4 ~~~~~~v~iiD~~~~~-~~~~~~~l~~-~g~~~~v~~~~~~~~~~~---------~---------~~~~gvvl~gg~~~~ 63 (204) T 1gpm_A 4 NIHKHRILILDFGSQY-TQLVARRVRE-LGVYCELWAWDVTEAQIR---------D---------FNPSGIILSGGPEST 63 (204) T ss_dssp CTTSSEEEEEECSCTT-HHHHHHHHHH-TTCEEEEEESCCCHHHHH---------H---------HCCSEEEECCCSSCT T ss_pred CCCCCCEEEEECCCHH-HHHHHHHHHH-CCCEEEEECCCCCHHHHH---------H---------CCCCEEEECCCCCCC T ss_conf 6666908999899759-9999999987-597389986999999997---------2---------499999989999980 Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 442200769999999748904885 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVis 245 (529) .| .++...++...+..+||+- T Consensus 64 ~~---~~~~~~i~~~~~~~~PiLG 84 (204) T 1gpm_A 64 TE---ENSPRAPQYVFEAGVPVFG 84 (204) T ss_dssp TS---TTCCCCCGGGGTSSSCEEE T ss_pred CC---CCCCCCCHHHHCCCCCEEE T ss_conf 00---7994015998818999999 No 194 >>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:1-108,A:241-291) Probab=58.60 E-value=11 Score=16.80 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=62.0 Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 28999847-842589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) ..||||.+ .+..-+.+++.-+.. +.++.+.++++.-. +....++++.+... .+|.|||+-.-- T Consensus 9 ~~IGviip~l~~~f~~~ii~gie~aa~~~Gy~l~i~~~~~d----~e~~~~~l~~l~~~-------~vDGIII~~~~~-- 75 (159) T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAED----IVREREAVGQFFER-------RVDGLILAPSEG-- 75 (159) T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTC----HHHHHHHHHHHHHT-------TCSEEEECCCSS-- T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEEECCCC-- T ss_conf 99999929998889999999999999986998999968999----79999999999856-------973885310121-- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 44220076999999974890488520577752589886 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) +......+....+|||. |+...+..-+++| T Consensus 76 -------~~~~i~~l~~~giPvV~-id~~~~~~~~~~V 105 (159) T 3egc_A 76 -------EHDYLRTELPKTFPIVA-VNRELRIPGCGAV 105 (159) T ss_dssp -------CCHHHHHSSCTTSCEEE-ESSCCCCTTCEEE T ss_pred -------CHHHHHHHHHHCCCCCC-CCCCCCCCCCEEE T ss_conf -------10158999863355422-3455568874489 No 195 >>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} (A:) Probab=58.46 E-value=11 Score=16.79 Aligned_cols=100 Identities=24% Similarity=0.228 Sum_probs=60.5 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) +.++|-|| .+....+++++.+=..|++++..... --+|++.+... .||+||+==. T Consensus 2 M~~~ILiV--dD~~~~r~~l~~~L~~~g~~v~~a~~----------~~eAl~~l~~~-------~~DlvllD~~------ 56 (136) T 1mvo_A 2 MNKKILVV--DDEESIVTLLQYNLERSGYDVITASD----------GEEALKKAETE-------KPDLIVLDVM------ 56 (136) T ss_dssp CCCEEEEE--CSCHHHHHHHHHHHHHTTCEEEEESS----------HHHHHHHHHHH-------CCSEEEEESS------ T ss_pred CCCCEEEE--ECCHHHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEECCC------ T ss_conf 88889999--79999999999999988999999899----------99999998618-------9999997689------ Q ss_pred HHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHH-HHHHCCCCCCCH Q ss_conf 220076999999974----890488520577752589-886412377721 Q gi|254780791|r 224 LWHFNDEMIVRAIAN----SSIPIISAIGHETDWTLA-DYAADLRAPTPT 268 (529) Q Consensus 224 L~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~-D~VAD~Ra~TPT 268 (529) |-..|-.++++.+-. +++|++|+.|...+.--+ +.-+|-=-.-|- T Consensus 57 lP~~~g~~~~~~~r~~~~~~~ii~~t~~~~~~~~~~a~~~g~~~~l~KP~ 106 (136) T 1mvo_A 57 LPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPF 106 (136) T ss_dssp CSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSC T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCC T ss_conf 89998699999998449998089997769999999999859984787999 No 196 >>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (B:) Probab=58.45 E-value=7.8 Score=18.09 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=38.8 Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 77758999516888444220076999999974890488520577752589886 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ..||+|+| +.+.+|..+++.-..+.||||+=+--..|.+.+||+ T Consensus 156 ~~P~~iii---------~d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~Idyp 199 (231) T 3bbn_B 156 GLPDIVII---------VDQQEEYTALRECITLGIPTICLIDTNCNPDLADIS 199 (231) T ss_dssp SCCSEEEE---------SCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEE T ss_pred CCCCEEEE---------ECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCEE T ss_conf 14516898---------316621898998986699769987279997657677 No 197 >>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} (A:1-101,A:213-226) Probab=58.16 E-value=11 Score=16.75 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=58.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHH----C---CCE-EEEEEECCC--------CCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 28999847842589999998630----5---975-899972100--------1111036799999999741003576777 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC----R---FPL-RVIIFPVKV--------QGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~----r---~p~-~~~~~p~~v--------QG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) |+||||-.-+-++=-||.+.+.+ + ... .++++.+.+ .++...+.+.++++...+.+ + T Consensus 2 K~IGIIGGmGp~aT~~yy~~I~~~~~a~~~~~~~p~iii~s~~~~dr~~~~~~~~~~~~~L~~~~~~Le~aG-------a 74 (115) T 2zsk_A 2 KKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNPEGWEGRKKILINAAKALERAG-------A 74 (115) T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHHHTCTTHHHHHHHHHHHHHHHHHHHT-------C T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-------C T ss_conf 769997346889999999999999787618877885899817803402124552238899999999984469-------8 Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC Q ss_conf 58999516888444220076999999974890488520577 Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE 250 (529) Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE 250 (529) |+|+|+= -.==++|++- -..+++|+|++-=|- T Consensus 75 d~ivi~c----NTaH~~~d~i-----~~~~~iPilh~~~~~ 106 (115) T 2zsk_A 75 ELIAFAA----NTPHLVFDDV-----QREVNVPMVSAEIHM 106 (115) T ss_dssp SEEEESS----SGGGGGHHHH-----HHHCSSCBCCHHHHH T ss_pred CEEEEEC----CHHHHHHHHH-----HHHCCCCEEEHHHHH T ss_conf 8899945----1778539999-----986599976199999 No 198 >>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:) Probab=57.91 E-value=4.4 Score=20.29 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH Q ss_conf 5899999986305975-899972100111103679999999974100357677758999516888444220076999999 Q gi|254780791|r 157 AVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529) Q Consensus 157 a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529) ..+..+++.+..++|+ .++||.+...|+.-+.| ..|+.|+...+-+..+++-. ... T Consensus 10 ~~~~~~i~~l~~~~~v~~i~LFGS~ArG~~~~~S------------------DIDi~V~~~~~~~~~~~~~i-----~~~ 66 (98) T 1wot_A 10 RARREAVLSLCARHGAVRVRVFGSVARGEAREDS------------------DLDLLVAFEEGRTLLDHARL-----KLA 66 (98) T ss_dssp HHHHHHHHHHHHHHTCSSCEECSHHHHTCCCTTC------------------CCEEEECCCSSCCHHHHHHH-----HHH T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------------------CCEEEEEECCCCCHHHHHHH-----HHH T ss_conf 9999999999998098489998884379858999------------------94289861899899999999-----999 Q ss_pred HH-HCCCEEEEEECCCCCCHHHHHH Q ss_conf 97-4890488520577752589886 Q gi|254780791|r 236 IA-NSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 236 I~-~~~iPVisgIGHE~D~Tl~D~V 259 (529) +. .+++||---+=++....+.+.| T Consensus 67 l~~~~~~~vdlv~~~~~~~~~~~~i 91 (98) T 1wot_A 67 LEGLLGVRVDIVSERGLAPRLREQV 91 (98) T ss_dssp HHHHSCSCCEEEETTTSCHHHHHHH T ss_pred HHHHHCCCEEEEEHHHCCHHHHHHH T ss_conf 9998099689977555999999999 No 199 >>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} (A:) Probab=57.87 E-value=11 Score=16.71 Aligned_cols=113 Identities=11% Similarity=0.011 Sum_probs=71.8 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE--CCCCCH Q ss_conf 652899984784258999999863059758999721001111036799999999741003576777589995--168884 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA--RGGGSI 221 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~--RGGGS~ 221 (529) ....|.++....+....++++..+.... .+.+ |-..+.+..++++. ..|.|++. .|||.. T Consensus 128 g~d~v~l~~~~~~~~~~~~~~~~~~~g~-~~~~------~~~~~~~~~~a~~~-----------g~d~i~~~~~~~~~~~ 189 (254) T 1vc4_A 128 GASAALLIVALLGELTGAYLEEARRLGL-EALV------EVHTERELEIALEA-----------GAEVLGINNRDLATLH 189 (254) T ss_dssp TCSEEEEEHHHHGGGHHHHHHHHHHHTC-EEEE------EECSHHHHHHHHHH-----------TCSEEEEESBCTTTCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEE------EEECHHHHHHHHCC-----------CCCEEEEECCCHHHHH T ss_conf 5238999999987778999999998388-2265------55128663021158-----------9868999525556653 Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHC--------CCCCCCHHHHHHH Q ss_conf 4422007699999997489048852057--775258988641--------2377721456763 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGH--ETDWTLADYAAD--------LRAPTPTGAAEMA 274 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGH--E~D~Tl~D~VAD--------~Ra~TPTaAAEla 274 (529) .+...+....+.+.....++||+.+=|= ..|.-....-|| .+++.|.++++.+ T Consensus 190 ~~~~~~~~~~~~~~~~~~~~pv~~~GGI~~~~~~~~l~~GAdgV~vGsai~~a~d~~~~~~~l 252 (254) T 1vc4_A 190 INLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGLFDAVLIGTSLMRAPDLEAALREL 252 (254) T ss_dssp BCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTTTCSEEEECHHHHTSSCHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHH T ss_conf 138889886320002577988998469999999999986999999883640799999999984 No 200 >>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Plasmodium falciparum} (A:) Probab=57.82 E-value=11 Score=16.70 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=69.3 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-ECCCCCH Q ss_conf 265289998478425899999986305975899972100111103679999999974100357677758999-5168884 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL-ARGGGSI 221 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii-~RGGGS~ 221 (529) ..|.-+-+....-+++.-|+-..+-+ .-+++--...+......+.+.+..+...+. -.+++. -=+||+. T Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~~~~~----g~ii~~~~~~~~~~~~~i~~~l~~a~~~~~------~~i~l~InSpGG~v 82 (215) T 2f6i_A 13 GRENLYFQGHMDIKDMKKDVKLFFFK----KRIIYLTDEINKKTADELISQLLYLDNINH------NDIKIYINSPGGSI 82 (215) T ss_dssp ---------CCCCSCSSHHHHHHHHT----TTEEEECSCBCHHHHHHHHHHHHHHHHHCC------SCEEEEEEECCBCH T ss_pred CCCCHHHHCCCCCCCCCHHHHHHHHC----CCEEEECCEECHHHHHHHHHHHHHHHCCCC------CCEEEEEECCCHHH T ss_conf 97423542556513241148999864----858997880178999999999999756898------78599998975036 Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHHCCCCCCCH Q ss_conf 44220076999999974890488520577--752589886412377721 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYAADLRAPTPT 268 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~VAD~Ra~TPT 268 (529) . .-+.+.++|-.++.||++-|.+- ---+++-..+|.+.-.|+ T Consensus 83 ~-----~~~~i~~~i~~~~~pv~~~v~g~aaS~g~~ia~a~d~~~~~~~ 126 (215) T 2f6i_A 83 N-----EGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSL 126 (215) T ss_dssp H-----HHHHHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEEC T ss_pred H-----HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCC T ss_conf 7-----7899998998627974899824431056788861687751325 No 201 >>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} (A:) Probab=57.68 E-value=11 Score=16.68 Aligned_cols=83 Identities=13% Similarity=0.225 Sum_probs=58.2 Q ss_pred CCCCEEEEEECCC-------------HHHHHHHHHHH---HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 2652899984784-------------25899999986---3059758999721001111036799999999741003576 Q gi|254780791|r 143 FIPKIIAVITSPT-------------GAVIRDILQRI---SCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTC 206 (529) Q Consensus 143 ~~p~~i~vits~~-------------~a~~~D~~~~~---~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~ 206 (529) ..-.+|-||-.|+ ..-+.|+...+ .....+++..|-+=.-| +|+..|..+.. T Consensus 4 m~~~kilviNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG-----elId~I~~a~~------- 71 (156) T 1gtz_A 4 LANAPIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEG-----ELVDWIHEARL------- 71 (156) T ss_dssp TTTSCEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHH-----HHHHHHHHHHH------- T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHH-----HHHHHHHHHHC------- T ss_conf 678948999688800058878871885699999999999999839814360025399-----99999999762------- Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCC-CEEE Q ss_conf 7775899951688844422007699999997489-0488 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSS-IPII 244 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~-iPVi 244 (529) .+|.|||==|| |.+-...+..|+..++ +|+| T Consensus 72 -~~dgiIiNpga------~THtSvAl~DAl~~~~~~P~v 103 (156) T 1gtz_A 72 -NHCGIVINPAA------YSHTSVAILDALNTCDGLPVV 103 (156) T ss_dssp -HCSEEEEECTT------HHHHCHHHHHHHHTSTTCCEE T ss_pred -CCCEEEECCHH------HHHHHHHHHHHHHHCCCCCEE T ss_conf -57249976514------411327699999853358779 No 202 >>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} (A:) Probab=57.56 E-value=9.6 Score=17.28 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.7 Q ss_pred CCCCEEEEEEECCCCEEE Q ss_conf 888627999874894799 Q gi|254780791|r 48 HSSGHAYFSLKDNHSRID 65 (529) Q Consensus 48 ~~sGH~Yf~lkd~~a~i~ 65 (529) .++|+|||.||+.+.+|= T Consensus 8 ~~~g~~~f~Lka~NgqvI 25 (64) T 3bid_A 8 DAKGEYRWRLKAANHEII 25 (64) T ss_dssp CTTSCEEEEEECTTSCEE T ss_pred CCCCCEEEEEEECCCCEE T ss_conf 789989999992899999 No 203 >>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structural genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* (A:1-115) Probab=57.39 E-value=11 Score=16.89 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=20.4 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 899972100111103679999999974100357677758999516888 Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ..+++|..+ +++.++++.+++.+ .+=+++||||. T Consensus 63 ~~Vv~P~~~------~eV~~~v~~~~~~~--------~i~i~~rggGh 96 (115) T 2exr_A 63 LAVVRPVGP------EDIAGAVKAALRSD--------KLTVAARGNGH 96 (115) T ss_dssp SEEEECSSH------HHHHHHHHHHHHSS--------SCCEEEESSSC T ss_pred CEEEECCCH------HHHHHHHHHHHHCC--------CCEEEEECCCC T ss_conf 579961999------99999999999728--------90499987980 No 204 >>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} (A:) Probab=57.31 E-value=11 Score=16.64 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=49.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) .+||||--+. .+.|+++.++++- +++.++|..- ...++|.|||.=|-++..|.. T Consensus 2 ~~I~ii~~~~--~~~~~~~~l~~~G-~~v~~~~~~~-----------------------~l~~~Dgiii~GGp~~~~~~~ 55 (196) T 2nv0_A 2 LTIGVLGLQG--AVREHIHAIEACG-AAGLVVKRPE-----------------------QLNEVDGLILPGGESTTMRRL 55 (196) T ss_dssp CEEEEECSSS--CCHHHHHHHHHTT-CEEEEECSGG-----------------------GGGGCSEEEECCSCHHHHHHH T ss_pred CEEEEEEECC--CHHHHHHHHHHCC-CCEEEECCHH-----------------------HHHHCCEEEECCCCCHHHHHH T ss_conf 3999997078--1999999999879-9499989989-----------------------982088799869872799997 Q ss_pred HCC--HHHHHHHHHHCCCEEEE Q ss_conf 007--69999999748904885 Q gi|254780791|r 226 HFN--DEMIVRAIANSSIPIIS 245 (529) Q Consensus 226 ~FN--~e~laraI~~~~iPVis 245 (529) ..+ ...+++...+..+||+- T Consensus 56 ~~~~~~~~~i~~~~~~~~PilG 77 (196) T 2nv0_A 56 IDTYQFMEPLREFAAQGKPMFG 77 (196) T ss_dssp HHHTTCHHHHHHHHHTTCCEEE T ss_pred HHHCCCCCHHHHHCCCCCEEEE T ss_conf 5322001022310246854687 No 205 >>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus HB8} (A:1-151,A:271-301) Probab=56.59 E-value=12 Score=16.55 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=68.6 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999976540122610016310265289998478425899999986305975899-972100111103679999999974 Q gi|254780791|r 121 EKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVKVQGDECPKEIANAILQLNT 199 (529) Q Consensus 121 e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~vQG~~a~~~i~~ai~~~~~ 199 (529) ++++.-|..-..|..+++.+-|.-=+.|+.+=-.+|---+==......+-+..++ +-|...|= +-.+++......+.. T Consensus 21 ~ei~~ll~~A~~lk~~~~~~~~L~gk~i~llF~e~StRTR~SFe~A~~~LGg~~i~l~~~~s~~-~kgEs~~Dtarvls~ 99 (182) T 2ef0_A 21 KELQALLDLAEQLKRERYRGEDLKGKVLALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVGI-GEREPVRDVAKNLER 99 (182) T ss_dssp HHHHHHHHHHHHHHHHTCCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEGGGSCT-TTCCCHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHC T ss_conf 9999999999998746335765789889998447871189999999997225511254310123-332119999987630 Q ss_pred HCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE-ECCC-CCCHHHHHH Q ss_conf 10035767775899951688844422007699999997489048852-0577-752589886 Q gi|254780791|r 200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA-IGHE-TDWTLADYA 259 (529) Q Consensus 200 ~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg-IGHE-~D~Tl~D~V 259 (529) + +| +|++|+. ....+-.....+.+|||.| -||| .=-.|+|+- T Consensus 100 y--------~D-~iviR~~---------~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~ 143 (182) T 2ef0_A 100 F--------VE-GIAARVF---------RHETVEALARHAKVPVVNALSDRAHPLQALADLL 143 (182) T ss_dssp T--------CS-EEEEECS---------SHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHH T ss_pred C--------CC-EEEEEEC---------CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 3--------55-0358952---------6220999996468873446675879999999999 No 206 >>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} (A:) Probab=56.28 E-value=12 Score=16.51 Aligned_cols=50 Identities=14% Similarity=0.399 Sum_probs=29.9 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 1036799999999741003576777589995168-8844422007699999997489048852 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVisg 246 (529) .....|++..+.. ++|+||+++-| |.+.+++-=+ ..-+.+-.|++||+.= T Consensus 111 ~~~~~I~~~a~~~----------~~dliVlG~~~~~~~~~~~~Gs--~~~~vl~~~~~pVlvV 161 (175) T 2gm3_A 111 DPKDVICQEVKRV----------RPDFLVVGSRGLGRFQKVFVGT--VSAFCVKHAECPVXTI 161 (175) T ss_dssp CHHHHHHHHHHHH----------CCSEEEEEECCCC--------C--HHHHHHHHCSSCEEEE T ss_pred CHHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCCCCC--HHHHHHHCCCCCEEEE T ss_conf 8899999999983----------5756885478998666562386--9999983789898999 No 207 >>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} (A:1-218) Probab=56.15 E-value=12 Score=16.49 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=44.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH-- Q ss_conf 289998478425899999986305975899972100111103679999999974100357677758999516888444-- Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED-- 223 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD-- 223 (529) .+|+||.-.++- ..++.+-|...- ..+.+++..- ......+|.|||-=||.+..+ T Consensus 5 ~~I~vid~~~~~-~~~~~~~l~~~g-~~~~vv~~~~---------------------~~~l~~~dgiIlpGg~~~~~~~~ 61 (218) T 1jvn_A 5 PVVHVIDVESGN-LQSLTNAIEHLG-YEVQLVKSPK---------------------DFNISGTSRLILPGVGNYGHFVD 61 (218) T ss_dssp CEEEEECCSCSC-CHHHHHHHHHTT-CEEEEESSGG---------------------GCCSTTCSCEEEEECSCHHHHHH T ss_pred CEEEEEECCCCH-HHHHHHHHHHCC-CCEEEEECCC---------------------HHHHHCCCEEEECCCCCHHHHHH T ss_conf 989999799877-999999999869-9769996878---------------------66884599899899997799999 Q ss_pred -HHHCCHHHHHHHHHHCCCEEE Q ss_conf -220076999999974890488 Q gi|254780791|r 224 -LWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 224 -L~~FN~e~laraI~~~~iPVi 244 (529) .|......+.+...+..+||+ T Consensus 62 ~~~~~~~~~~i~~~~~~~~Pil 83 (218) T 1jvn_A 62 NLFNRGFEKPIREYIESGKPIM 83 (218) T ss_dssp HHHHTTCHHHHHHHHHTTCCEE T ss_pred HHHHCCCHHHHHHHHHCCCCEE T ss_conf 9998786999999998699499 No 208 >>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} (A:1-124) Probab=56.02 E-value=12 Score=16.47 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=44.8 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH--HCCHHHH Q ss_conf 42589999998630597589997210011110367999999997410035767775899951688844422--0076999 Q gi|254780791|r 155 TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW--HFNDEMI 232 (529) Q Consensus 155 ~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~--~FN~e~l 232 (529) +-..++.+++..-..|++++.... +--+|++.+... .||+|++ |+. ..|-.++ T Consensus 10 Dd~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~l~~~-------~~dlil~--------D~~mP~~~G~el 64 (124) T 1kgs_A 10 DERDLADLITEALKKEXFTVDVCY----------DGEEGXYXALNE-------PFDVVIL--------DIXLPVHDGWEI 64 (124) T ss_dssp SSHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEE--------ESCCSSSCHHHH T ss_pred CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE--------ECCCCCCCCCCH T ss_conf 999999999999998799999989----------999999999728-------9989999--------467765431010 Q ss_pred HHHHHHCC--CEEEEEECCCCCC Q ss_conf 99997489--0488520577752 Q gi|254780791|r 233 VRAIANSS--IPIISAIGHETDW 253 (529) Q Consensus 233 araI~~~~--iPVisgIGHE~D~ 253 (529) ++.+.+.+ +|||--.|+..+. T Consensus 65 ~~~~~~~~~~~pii~lt~~~~~~ 87 (124) T 1kgs_A 65 LKSXRESGVNTPVLXLTALSDVE 87 (124) T ss_dssp HHHHHHTTCCCCEEEEESSCHHH T ss_pred HHHHHCCCCCCCEEECCCCCCHH T ss_conf 12211134567532023344167 No 209 >>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* (A:) Probab=54.95 E-value=12 Score=16.34 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=57.6 Q ss_pred CEEEEEECC-----CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCC Q ss_conf 289998478-----42589999998630597589997210011110367999999997410035767775899951-688 Q gi|254780791|r 146 KIIAVITSP-----TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGG 219 (529) Q Consensus 146 ~~i~vits~-----~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGG 219 (529) .|||||.|. +.+-+.+.+..+.....+.++-.|-.+ ||--+++++-... +||.||-.= =|+ T Consensus 3 ~ri~IV~s~fn~~i~~~ll~ga~~~l~~~~~i~v~~VPGa~-------EiP~a~~~l~~~~------~~DavIaLG~VGe 69 (156) T 2b99_A 3 KKVGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPGIK-------DLPVACKKLLEEE------GCDIVMALGMPGK 69 (156) T ss_dssp CEEEEEEESSCSSCCHHHHHHHHHHHCTTCEEEEEEESSGG-------GHHHHHHHHHHHS------CCSEEEEEECCCS T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH-------HHHHHHHHHHHCC------CCCEEEEEEEEEC T ss_conf 77999983411888999999999972999747999878676-------8999999998548------8529999988616 Q ss_pred CHHHHHHCCHHHHHHHH----HHCCCEEEEEECCCCCC Q ss_conf 84442200769999999----74890488520577752 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAI----ANSSIPIISAIGHETDW 253 (529) Q Consensus 220 S~eDL~~FN~e~laraI----~~~~iPVisgIGHE~D~ 253 (529) . +-.-|=-..+.+.+ ....+||+.||=++... T Consensus 70 T--~H~e~V~~~vs~gl~~v~l~~~~PV~~gvlt~~~e 105 (156) T 2b99_A 70 A--EKDKVCAHEASLGLMLAQLMTNKHIIEVFVHEDEA 105 (156) T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGS T ss_pred C--CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH T ss_conf 6--63212199999999999998789989873578657 No 210 >>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303) Probab=54.71 E-value=12 Score=16.31 Aligned_cols=102 Identities=20% Similarity=0.170 Sum_probs=68.4 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEE----------------ECCC-----CC-----------CCHHH Q ss_conf 5289998478-42589999998630---597589997----------------2100-----11-----------11036 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIF----------------PVKV-----QG-----------DECPK 188 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~----------------p~~v-----QG-----------~~a~~ 188 (529) .+||||+||- ...++...++-+-+ .+..+|+-+ +-.| || ...++ T Consensus 1 mkrI~IltsGGdaPGlNa~Ir~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGtiLgtsR~~~~~~~~ 80 (182) T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEEE 80 (182) T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 98899988578737799999999999997899899987306874689917799999876773377401357777555556 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCH Q ss_conf 79999999974100357677758999516888444220076999999974890488520577752589886412377721 Q gi|254780791|r 189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPT 268 (529) Q Consensus 189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPT 268 (529) ..-++++.+.... .|.+|++=|-||.. -|..+++..+||| ||-.-+|- |+-=-||| T Consensus 81 ~~~~~~~~l~~~~-------Id~LivIGGdGS~~---------~a~~L~~~gi~vI-gIPkTIDN-------Di~GG~Pt 136 (182) T 1zxx_A 81 GQLAGIEQLKKHG-------IDAVVVIGGDGSYH---------GALQLTRHGFNSI-GLPGTIDN-------DIPGGTPT 136 (182) T ss_dssp HHHHHHHHHHHTT-------CCEEEEEECHHHHH---------HHHHHHHTTCCEE-EEEEETTC-------CCTCSCCC T ss_pred HHHHHHHHHHHHC-------CCEEEEECCCCHHH---------HHHHHHHCCCCCC-CEEEEECC-------CCCCCCCC T ss_conf 6777888998707-------88899967972799---------9998754246644-30233248-------88779999 Q ss_pred HH Q ss_conf 45 Q gi|254780791|r 269 GA 270 (529) Q Consensus 269 aA 270 (529) |- T Consensus 137 a~ 138 (182) T 1zxx_A 137 VS 138 (182) T ss_dssp HH T ss_pred HH T ss_conf 89 No 211 >>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305) Probab=54.66 E-value=12 Score=16.30 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=66.9 Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEE----------------CCCCC----------------CCHHH Q ss_conf 528999847-842589999998630---5975899972----------------10011----------------11036 Q gi|254780791|r 145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFP----------------VKVQG----------------DECPK 188 (529) Q Consensus 145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p----------------~~vQG----------------~~a~~ 188 (529) .|||||+|| -...++...++-+-+ .++++|+-+. ..|.| -.... T Consensus 1 mKrI~IltsGGdaPGlNa~Ir~vv~~a~~~g~ev~G~~~G~~GL~~~~~~~l~~~~v~~i~~~GGt~LgtsR~~~~~~~~ 80 (186) T 3pfk_A 1 MKRIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEE 80 (186) T ss_dssp CCEEEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCGGGSSHH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCH T ss_conf 98899987688768999999999999997799999984156875679951599899987986485110458888654310 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC--CCCC Q ss_conf 79999999974100357677758999516888444220076999999974890488520577752589886412--3777 Q gi|254780791|r 189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL--RAPT 266 (529) Q Consensus 189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~--Ra~T 266 (529) ..-++++.+.+.. .|.+|++=|-||.. -|..+++..|||| ||-.-+|- |+ |--| T Consensus 81 ~~~~~~~~l~~~~-------Id~LivIGGdgS~~---------~a~~L~e~gi~vi-giPkTIDN-------Di~QRGG~ 136 (186) T 3pfk_A 81 GQKKGIEQLKKHG-------IQGLVVIGGDGSYQ---------GAKKLTEHGFPCV-GVPGTIDN-------DIPQRGGS 136 (186) T ss_dssp HHHHHHHHHHHHT-------CCEEEEEECHHHHH---------HHHHHHHTTCCEE-EEEBCSSC-------CCTGGCSC T ss_pred HHHHHHHHHHHHC-------CCEEEEECCCHHHH---------HHHHHHHCCCCEE-EEEEECCC-------CCCHCCCC T ss_conf 1557999999836-------76599945847999---------9999873367555-31112268-------88760799 Q ss_pred CHHH Q ss_conf 2145 Q gi|254780791|r 267 PTGA 270 (529) Q Consensus 267 PTaA 270 (529) |||- T Consensus 137 Pta~ 140 (186) T 3pfk_A 137 PTAF 140 (186) T ss_dssp CCHH T ss_pred CCHH T ss_conf 9778 No 212 >>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} (A:1-185,A:357-384) Probab=54.37 E-value=12 Score=16.27 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=51.0 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH--HHHHHHCCCEEEEEE------ Q ss_conf 972100111103679999999974100357677758999516888444220076999--999974890488520------ Q gi|254780791|r 176 IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI--VRAIANSSIPIISAI------ 247 (529) Q Consensus 176 ~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l--araI~~~~iPVisgI------ 247 (529) -+...+-|.+-..++..++..+...-.. .+||+|++. .|- .+.+ |-+-+...|||+-=- T Consensus 57 ~~~l~~~~~~~~~~~~~~i~~l~~vl~~---~kPDlVlV~------GD~----~~~la~AlaA~~~~IPVaHieaGlrs~ 123 (213) T 1vgv_A 57 DLNIXQPGQGLTEITCRILEGLKPILAE---FKPDVVLVH------GDT----TTTLATSLAAFYQRIPVGHVEAGLRTG 123 (213) T ss_dssp ECCCCSTTSCHHHHHHHHHHHHHHHHHH---HCCSEEEEE------TTC----HHHHHHHHHHHTTTCCEEEESCCCCCS T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCEEE------CCC----CCHHHHHHHHHHHCCEEEEEECCCCCC T ss_conf 5235899999999999999864888974---466540320------365----311348999874164389862244667 Q ss_pred ----C--CCCCCHHHHHHHCCC-CCCCHHHH Q ss_conf ----5--777525898864123-77721456 Q gi|254780791|r 248 ----G--HETDWTLADYAADLR-APTPTGAA 271 (529) Q Consensus 248 ----G--HE~D~Tl~D~VAD~R-a~TPTaAA 271 (529) | =|...-++|-.||+- +||+.++. T Consensus 124 d~~~g~~ee~~R~~id~la~lhF~~t~~~r~ 154 (213) T 1vgv_A 124 DLYSPWPEEANRTLTGHLAXYHFSPTETSRQ 154 (213) T ss_dssp CTTSSTTHHHHHHHHHTTCSEEEESSHHHHH T ss_pred CCCCCCHHHHHHHHCCCCCEEEEECCHHHHH T ss_conf 7321463666665314324088742588998 No 213 >>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} (A:42-220) Probab=54.24 E-value=13 Score=16.25 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=73.9 Q ss_pred CCCCCCC-CCCHHHHHHHH-----HHHHHH---------C--CCCEEEEEEECCCCCCCCC--C----EEEEEEECCCCE Q ss_conf 8888898-62299999999-----999740---------0--1718999997054356888--6----279998748947 Q gi|254780791|r 7 KNSLDHP-EYSVSELSYHL-----KHIVES---------N--LSHVCVRGEISGYRGIHSS--G----HAYFSLKDNHSR 63 (529) Q Consensus 7 ~~~~~~~-~~svs~l~~~i-----~~~l~~---------~--~~~~~v~gEis~~~~~~~s--G----H~Yf~lkd~~a~ 63 (529) ||..+.. ++.+.++.... -..++. + ...|-|.|-|.+.+..... | -.-|+|=|..+. T Consensus 2 sPt~~~~v~l~i~DI~~l~~~~~~~~~~~~~~~~i~fy~NhPI~~V~i~G~VV~~~~k~~~~~~~r~~~~~~~iDD~SG~ 81 (179) T 3kf8_A 2 APTFDKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGI 81 (179) T ss_dssp STTTTSEEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSS T ss_pred CCCCCCEEEEEEEEHHHCCCHHEECCCHHHCCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCC T ss_conf 75557546478843121752210247366412648999876518999999999999723544576653499999568999 Q ss_pred EEEEEECCCCCC-----CCC-CCCCCCEEEEEEEEE-EE-----CCCCEEEEEEEEEEECC--CCHHHHHHHHHHHHH Q ss_conf 999997352105-----866-814598899999966-75-----28843799999710168--007999999999976 Q gi|254780791|r 64 IDAIIWKGTLNK-----IEF-LPEEGIEFLVIGKIT-TF-----PGSSKYQIIIESLIPSG--SGTLLTALEKRKKKL 127 (529) Q Consensus 64 i~~~~~~~~~~~-----~~~-~~~~G~~v~~~g~~~-~y-----~~~g~~ql~v~~i~~~g--~G~l~~~~e~lk~~L 127 (529) +.|+.|+..-.. ++. ..-.|..+-+.|.+. +| .-+|..||.|+.+...+ -.+|..+.+-.++.+ T Consensus 82 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~i~~v~g~i~~t~r~~rqi~ve~~~~~~d~n~~~~~Ei~~W~~~~ 159 (179) T 3kf8_A 82 DSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRM 159 (179) T ss_dssp SCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESSSCCHHHHHHHHHHHH T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 468999957632356562444467684699987861054202223245538999999994367742779999999999 No 214 >>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306) Probab=53.87 E-value=13 Score=16.21 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=50.4 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHC-CC--EEEEEEE-----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 289998478425899999986305-97--5899972-----100111103679999999974100357677758999516 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCR-FP--LRVIIFP-----VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r-~p--~~~~~~p-----~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) .++||+|+.++.-.+.+...+..- ++ +..++.. +.+=|+.-...|..|... .+..|.+.|| T Consensus 54 ~~~~ivTn~~~~~~~~~~~~L~~~Gl~~~fd~ii~s~~p~~~l~VGDs~~~Di~~a~~a-----------G~~ti~v~~g 122 (166) T 2oyc_A 54 KAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSDPARTLXVGDRLETDILFGHRC-----------GXTTVLTLTG 122 (166) T ss_dssp CEEEEEECCCSSCHHHHHHHHHHTTCCSCCGGGEEEHCGGGEEEEESCTTTHHHHHHHH-----------TCEEEEESSS T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHCHHHEEEECCCCHHHHHHHHHC-----------CCEEEEECCC T ss_conf 98899958999999999999874377643211200149889788689762679999987-----------9919998999 Q ss_pred CCCHHHHHHC Q ss_conf 8884442200 Q gi|254780791|r 218 GGSIEDLWHF 227 (529) Q Consensus 218 GGS~eDL~~F 227 (529) ++..+++... T Consensus 123 ~~~~~~~~~~ 132 (166) T 2oyc_A 123 VSRLEEAQAY 132 (166) T ss_dssp SCCHHHHHHH T ss_pred CCCHHHHHHH T ss_conf 9987898753 No 215 >>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} (A:1-140) Probab=53.58 E-value=13 Score=16.17 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=63.5 Q ss_pred CCCCCCCCCEEEEEECCCH---H---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 1631026528999847842---5---899999986305975899972100111103679999999974100357677758 Q gi|254780791|r 138 KNPIPFIPKIIAVITSPTG---A---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDI 211 (529) Q Consensus 138 k~~lP~~p~~i~vits~~~---a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ 211 (529) ..+.+.-|++|.||-.|.+ . .+..+...+. ++.+.+.++.+.-. +...++ ++.+.. ..+|+ T Consensus 17 ~~~~~~~~~~~~vi~Np~sG~~~~~~~~~~i~~~l~-~~g~~~~~~~t~~~--~~~~~~---~~~~~~-------~~~~~ 83 (140) T 2qv7_A 17 PRGSHXXRKRARIIYNPTSGKEQFKRELPDALIKLE-KAGYETSAYATEKI--GDATLE---AERAXH-------ENYDV 83 (140) T ss_dssp --CCCSCCEEEEEEECTTSTTSCHHHHHHHHHHHHH-HTTEEEEEEECCST--THHHHH---HHHHTT-------TTCSE T ss_pred CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-HCCCEEEEEECCCC--CHHHHH---HHHHHH-------CCCCE T ss_conf 688424664599999967888757999999999999-87992999982896--669999---998887-------69988 Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHCCCCCC-CHHHHHHH Q ss_conf 999516888444220076999999974890-4885205777525898864123777-21456763 Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIANSSI-PIISAIGHETDWTLADYAADLRAPT-PTGAAEMA 274 (529) Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~~~~i-PVisgIGHE~D~Tl~D~VAD~Ra~T-PTaAAEla 274 (529) ||++=|-|.+-+ ++.++..++. |.|.-|-== |-=||.=++..++ |..|++.+ T Consensus 84 ivv~GGDGTl~~--------vi~~l~~~~~~~~i~iiP~G---T~N~fAr~lg~~~~~~~a~~~i 137 (140) T 2qv7_A 84 LIAAGGDGTLNE--------VVNGIAEKPNRPKLGVIPXG---TVNDFGRALHIPNDIXGALDVI 137 (140) T ss_dssp EEEEECHHHHHH--------HHHHHTTCSSCCEEEEEECS---SCCHHHHHTTCCSSHHHHHHHH T ss_pred EEEECCCCHHHH--------HHHHHHHHCCCCCEEEEECC---CCCCCHHHHCCCCHHHHHHHHH T ss_conf 999867757999--------99999863557617999558---9974278604882388898876 No 216 >>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} (A:) Probab=53.47 E-value=13 Score=16.16 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=52.2 Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE Q ss_conf 718999997054356888627999874894799999735210586681459889999996675288437999997101 Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP 110 (529) Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~ 110 (529) ..|-++|.|.. . -||=.|..+|....|..-|=...+....+.| .++|.+.|+|+ .....-.+.|..|+. T Consensus 38 ~~V~L~G~Iv~--~---i~~d~Y~F~D~tG~I~VeId~~~w~G~~v~p--~~~VrI~GevD--k~~~~~~IdV~~i~~ 106 (109) T 1nnx_A 38 TWVTLRGNIVE--R---ISDDLYVFKDASGTINVDIDHKRWNGVTVTP--KDTVEIQGEVD--KDWNSVEIDVKQIRK 106 (109) T ss_dssp EEEEEEEEEEE--E---EETTEEEEEETTEEEEEECCGGGSTTCCCCT--TSCEEEEEEEE--EETTEEEEEEEEEEE T ss_pred CEEEEEEEEEE--E---ECCCEEEEECCCCCEEEEECHHHCCCCCCCC--CCEEEEEEEEE--CCCCCEEEEEEEEEE T ss_conf 84999889997--8---5895289988996499997845538966699--99899999992--899963899999997 No 217 >>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:1-108,A:240-290) Probab=53.36 E-value=13 Score=16.14 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=53.3 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-4258999999863---05975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -+.||||.+. +.--+..++.-+. +.+++.+.++++.-...+ ....+++.+... ++|.||+.-+. T Consensus 8 S~~IGVIip~l~npf~~~il~gIe~aa~~~Gy~lil~~s~~~d~e---~q~~~i~~li~~-------~vDGIIi~~~~-- 75 (159) T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPE---EQKHALLTAIER-------PVXGILLLSIA-- 75 (159) T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSS-------CCSEEEEESCC-- T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHH---HHHHHHHHHHHC-------CCCEEEEEHHH-- T ss_conf 998999909997689999999999999986998999968999999---999999999856-------95467520000-- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 4442200769999999748904885 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVis 245 (529) .+......+.+..||||. T Consensus 76 -------~~~~~i~~l~~~gIPvVl 93 (159) T 3clk_A 76 -------LTDDNLQLLQSSDVPYCF 93 (159) T ss_dssp -----------CHHHHHCC--CEEE T ss_pred -------HHHHHHHHHHHHCCCCCC T ss_conf -------135689998741021112 No 218 >>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} (A:) Probab=53.35 E-value=13 Score=16.14 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=57.4 Q ss_pred CEEEEEECCC-------------HHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 2899984784-------------25899999986305---9758999721001111036799999999741003576777 Q gi|254780791|r 146 KIIAVITSPT-------------GAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 146 ~~i~vits~~-------------~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) |||-||-.|+ ..-+.|+...+++. ..+++..|-+=--| +|+..|..+.. .+ T Consensus 1 kkilviNGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~~g~~v~~~QSN~EG-----~lid~i~~a~~--------~~ 67 (143) T 1gqo_A 1 PHFLILNGPNVNRLGSREPEVFGRQTLTDIETDLFQFAEALHIQLTFFQSNHEG-----DLIDAIHEAEE--------QY 67 (143) T ss_dssp CEEEEEECTTGGGTTSSCHHHHCSCCHHHHHHHHHHHHHHHTCEEEEEECSCHH-----HHHHHHHHHTT--------TC T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCHHH-----HHHHHHHHHHC--------CC T ss_conf 979998088801058878874786599999999999999759960042555599-----99999998603--------67 Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 589995168884442200769999999748904885 Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) |.|||==|| |.+-+..+..|+..+++|+|- T Consensus 68 dgiIiNpga------~ThtS~al~DAl~~~~~P~VE 97 (143) T 1gqo_A 68 SGIVLNPGA------LSHYSYAIRDAVSSISLPVVE 97 (143) T ss_dssp SEEEEECGG------GGGTCHHHHHHHHTSCSCEEE T ss_pred CEEEECCHH------HHHHCEEHHHHHHHCCCCEEE T ss_conf 568953313------442002379999854999899 No 219 >>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolution, signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A (A:) Probab=53.33 E-value=13 Score=16.14 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=50.7 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 26528999847842589999998630597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) ..++||-||-... ..+.++...-+.|++++..+.+ --+|++.+... .||+||+- - T Consensus 3 ~~~~~ILiVDdd~--~~~~~l~~~L~~~g~~v~~a~~----------~~~al~~l~~~-------~~d~iilD------~ 57 (127) T 2gkg_A 3 HMSKKILIVESDT--ALSATLRSALEGRGFTVDETTD----------GKGSVEQIRRD-------RPDLVVLA------V 57 (127) T ss_dssp ---CEEEEECSCH--HHHHHHHHHHHHHTCEEEEECC----------HHHHHHHHHHH-------CCSEEEEE------S T ss_pred CCCCCEEEEECCH--HHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHHC-------CCCEEEEE------E T ss_conf 6488589998999--9999999999987999999868----------49999999817-------99799743------0 Q ss_pred HHH-HCCHHHHHHHHHH----CCCEEEEEECCCC Q ss_conf 422-0076999999974----8904885205777 Q gi|254780791|r 223 DLW-HFNDEMIVRAIAN----SSIPIISAIGHET 251 (529) Q Consensus 223 DL~-~FN~e~laraI~~----~~iPVisgIGHE~ 251 (529) +|. ..|-+++++.|-+ +.+|||-=-+++. T Consensus 58 ~lp~~~dG~~l~~~lr~~~~~~~ipii~~s~~~~ 91 (127) T 2gkg_A 58 DLSAGQNGYLICGKLKKDDDLKNVPIVIIGNPDG 91 (127) T ss_dssp BCGGGCBHHHHHHHHHHSTTTTTSCEEEEECGGG T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCH T ss_conf 0134565779999998477779981999978960 No 220 >>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} (A:1-119,A:196-206,A:289-340) Probab=53.24 E-value=13 Score=16.13 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.6 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 6528999847842589999998630597589997 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIF 177 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~ 177 (529) .+.+|-||++|+|+|--.+.+.|.+++|.+++.. T Consensus 5 ~k~~IIVI~GPTGSGKStLa~~Lae~~~~eiI~~ 38 (182) T 3d3q_A 5 TKPFLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (182) T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEEC T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 8895699989772169999999999879979950 No 221 >>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} (A:1-115,A:228-286) Probab=53.24 E-value=13 Score=16.13 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=64.8 Q ss_pred CCCCCEEEEE-ECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 0265289998-4784258999999863059758999721--001111036799999999741003576777589995168 Q gi|254780791|r 142 PFIPKIIAVI-TSPTGAVIRDILQRISCRFPLRVIIFPV--KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 142 P~~p~~i~vi-ts~~~a~~~D~~~~~~~r~p~~~~~~p~--~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) +...+.|||+ +.-+|.+.-++++.+-...++ +++.+. .==|....++|.+-...+-..-+. ..+|+||| T Consensus 19 ~~~~~~IgifdsG~Ggltv~~~i~~~lp~~~~-iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~---~g~~~ivi---- 90 (174) T 2jfq_A 19 SHMNKPIGVIDSGVGGLTVAKEIMRQLPNETI-YYLGDIGRCPYGPRPGEQVKQYTVEIARKLME---FDIKMLVI---- 90 (174) T ss_dssp --CCSCEEEEESSSTTHHHHHHHHHHCTTCCE-EEEECTTTCCCTTSCHHHHHHHHHHHHHHHTT---SCCSEEEE---- T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCEEEE---- T ss_conf 35799889996897779999999997899998-99944888988889999999999999999985---48877998---- Q ss_pred CCHHHHHHCCHHHH-H--HHHHHCCCEEEEEECCCCCCHHHHHHH Q ss_conf 88444220076999-9--999748904885205777525898864 Q gi|254780791|r 219 GSIEDLWHFNDEMI-V--RAIANSSIPIISAIGHETDWTLADYAA 260 (529) Q Consensus 219 GS~eDL~~FN~e~l-a--raI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529) +=|.-.. + .--..++||||.-||.|+=.-+.++-. T Consensus 91 -------aCNTa~a~~l~~l~~~~~iPii~~ia~~vA~~v~~~L~ 128 (174) T 2jfq_A 91 -------ACNTATAVALEYLQKTLSISVIGVIGLETAREVSALLT 128 (174) T ss_dssp -------CCHHHHHHHHHHHHHHCSSEEEESHHHHHHHHHHHHHH T ss_pred -------ECCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH T ss_conf -------14648999999998518997798648999999999998 No 222 >>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 2g6a_A* 2g65_A* 2g6c_A* 2g68_A* (A:1-187,A:325-359) Probab=53.08 E-value=13 Score=16.11 Aligned_cols=107 Identities=18% Similarity=0.138 Sum_probs=60.0 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC-------------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 2652899984784258999999863059758999721-------------001111036799999999741003576777 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPV-------------KVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~-------------~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) .-=+.|+.|=-+.|--=+==.-....+-+.+++.+.. .+||+ -.++|...+..+..+ + T Consensus 56 l~gk~i~~lF~e~StRTR~SFe~Aa~~LG~~~i~l~~~~ss~~~e~~~~~~~~~~-kgEsi~Dta~~Ls~y--------~ 126 (222) T 1zq6_A 56 LKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGKDAWPIEFNLGTVMDGD-TEEHIAEVARVLGRY--------V 126 (222) T ss_dssp TTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECHHHHSCCEECSSSCCCCSS-CCEEHHHHHHHHHHH--------C T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCCCCCCCCCC-CCCCHHHHHHHHHCC--------C T ss_conf 8999899995688612799999999984996897378875001113666311477-767899999886424--------8 Q ss_pred CEEEEECCCCCHHHHH-HCCHHHHHHHHHHCCCEEEEEE-CCCCCCHHHHHH Q ss_conf 5899951688844422-0076999999974890488520-577752589886 Q gi|254780791|r 210 DIIILARGGGSIEDLW-HFNDEMIVRAIANSSIPIISAI-GHETDWTLADYA 259 (529) Q Consensus 210 D~iii~RGGGS~eDL~-~FN~e~laraI~~~~iPVisgI-GHE~D~Tl~D~V 259 (529) | +|++|+..+..+-+ .-++..|-...-.+.||||.+= |...=-.|+|+- T Consensus 127 D-~iviR~~~~~~~~~~~~~~~~l~~~a~~~~iPVIN~gd~~HPtQaLaDl~ 177 (222) T 1zq6_A 127 D-LIGVRAFPKFVDWSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHAL 177 (222) T ss_dssp S-EEEEECCCCSSCHHHHTTCHHHHHHHHHCSSCEEESSSSCCHHHHHHHHH T ss_pred C-EEEEECCCCCCCHHCCCHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHH T ss_conf 6-89996364321111140167999998766886113100110688888899 No 223 >>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes} (A:) Probab=52.97 E-value=13 Score=16.10 Aligned_cols=35 Identities=9% Similarity=0.393 Sum_probs=24.9 Q ss_pred CCCEEEEECCC-CCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 77589995168-884442200769999999748904885 Q gi|254780791|r 208 RPDIIILARGG-GSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 208 ~~D~iii~RGG-GS~eDL~~FN~e~laraI~~~~iPVis 245 (529) .+|+||+++.| +.+.-++.=..+.|++ .+|.||+. T Consensus 101 ~~DliViG~~~~~~~~~~~Gs~~~~v~~---~a~~pVlv 136 (138) T 3idf_A 101 DYNLLIIGSSENSFLNKIFASHQDDFIQ---KAPIPVLI 136 (138) T ss_dssp TCSEEEEECCTTSTTSSCCCCTTCHHHH---HCSSCEEE T ss_pred CCEEEEEECCCCCCCCCEECCHHHHHHH---CCCCCEEE T ss_conf 5305999669999633431769999997---28998999 No 224 >>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding; NMR {Homo sapiens} (A:) Probab=52.91 E-value=8.6 Score=17.71 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=26.6 Q ss_pred HHHCCCEEEEECCCCC--EE-------CCHHHCCCCCEEEEEEECEEEEEEEEECC Q ss_conf 7731461999848988--95-------77789299986999991109999995057 Q gi|254780791|r 456 NTLKRGYTSIQDTNNN--FI-------TQKRNLATKTRILINFFDGQANAIVINKA 502 (529) Q Consensus 456 ~~L~RGYaiv~~~~Gk--iI-------~s~~~l~~gd~i~i~l~DG~v~a~V~~k~ 502 (529) +.++|||-.|...+|. +. .....+..|+.|+-.+..|.-.-+..+.. T Consensus 24 k~f~kGfGFI~~~~g~~d~F~h~s~~~~~~~~l~~G~~V~f~~~~~~~G~~A~~V~ 79 (97) T 2ytx_A 24 CAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVR 79 (97) T ss_dssp CCCCSSEEEEECSSSCCCEEEETTTCCSCTTSCCSCCEEEEEECCCSSSCBEEEEE T ss_pred EEECCCCEEEECCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEE T ss_conf 99116702788289996399986991220165777869999999689997888979 No 225 >>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:61-174,A:321-366) Probab=52.21 E-value=13 Score=16.00 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=55.2 Q ss_pred CCEEEEEECCCH------HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 528999847842------589999998630---59758999721001111036799999999741003576777589995 Q gi|254780791|r 145 PKIIAVITSPTG------AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 145 p~~i~vits~~~------a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) -..||||.+... .-+.+|+.-+.+ +.++.++++++.- .. +..+.++.+... ++|.+|+. T Consensus 8 S~tIgvIip~~~~~~~~npff~~ii~gI~~~a~~~gy~lli~~~~~--~~---~~~~~i~~l~~~-------~vDGiIl~ 75 (160) T 3h5t_A 8 AGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPAS--SV---DHVSAQQLVNNA-------AVDGVVIY 75 (160) T ss_dssp CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCT--TC---CHHHHHHHHHTC-------CCSCEEEE T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC--CH---HHHHHHHHHHHC-------CCCCCCCC T ss_conf 9859999766543332212678899999999863585587521332--04---789999988641-------45654211 Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 16888444220076999999974890488520577752589886 Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) = ...+...++.+.+..+|+|. ||...+-.-.++| T Consensus 76 ~---------~~~~~~~i~~L~~~~iPvV~-id~~~~~~~~~~V 109 (160) T 3h5t_A 76 S---------VAKGDPHIDAIRARGLPAVI-ADQPAREEGMPFI 109 (160) T ss_dssp S---------CCTTCHHHHHHHHHTCCEEE-ESSCCSCTTCCEE T ss_pred C---------CCCCCHHHHHHHHCCCCCCC-CCCCCCCCCCCCC T ss_conf 3---------33220356666512787423-4543346777744 No 226 >>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-126) Probab=52.18 E-value=10 Score=16.99 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=57.2 Q ss_pred CCCCCEEEEEEC--CCHHHHHHHHHHHHHCCCEEEE-EEE--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 026528999847--8425899999986305975899-972--10011110367999999997410035767775899951 Q gi|254780791|r 142 PFIPKIIAVITS--PTGAVIRDILQRISCRFPLRVI-IFP--VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529) Q Consensus 142 P~~p~~i~vits--~~~a~~~D~~~~~~~r~p~~~~-~~p--~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529) -.-|++|+||-. ..+.--..+++.+...+...|+ +.| ..+.|..+-.++.+. . ..+|+++|+. T Consensus 5 l~~p~~iaVvG~s~~~~~~~~~v~~~l~~~~~~~V~pVnp~~~~i~g~~~y~sl~el-------~-----~~~D~v~i~~ 72 (126) T 2csu_A 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDI-------P-----DEIDLAIIVV 72 (126) T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSC-------S-----SCCSEEEECS T ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEECCEECCCCHHHC-------C-----CCCCEEEEEE T ss_conf 269986999885799986379999999847996189978998607987576998886-------9-----9989899997 Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 688844422007699999997489048852057 Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGH 249 (529) ...... .+++...+..++.+--+.+ T Consensus 73 p~~~~~--------~~v~e~~~~gi~~ii~~~~ 97 (126) T 2csu_A 73 PKRFVK--------DTLIQCGEKGVKGVVIITA 97 (126) T ss_dssp CHHHHH--------HHHHHHHHHTCCEEEECCC T ss_pred CHHHHH--------HHHHHHHHCCCCEEEEECC T ss_conf 789989--------9999999849988997167 No 227 >>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} (A:) Probab=51.23 E-value=14 Score=15.89 Aligned_cols=68 Identities=9% Similarity=0.235 Sum_probs=40.0 Q ss_pred CCCEEEEEECCCHHHHHH---------HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 652899984784258999---------99986305975899972100111103679999999974100357677758999 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRD---------ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D---------~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529) +|.+|.+|-..-++++.+ +...+...++ .+.++...+-|..+..-.-.--..+... ++|+||| T Consensus 1 ~~~~i~~iGDS~t~g~~~~~~~~~~~~~~~~l~~~~~-~~~~~n~g~~G~~~~~~~~~~~~~~~~~-------~~d~vii 72 (185) T 3hp4_A 1 MDNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQS-DIVLINASISGETSGGALRRLDALLEQY-------EPTHVLI 72 (185) T ss_dssp -CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTC-CEEEEECCCTTCCHHHHHHHHHHHHHHH-------CCSEEEE T ss_pred CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHHHCC-------CCCEEEE T ss_conf 9998999789777046888578869999999986299-8379843778765257664112443147-------9988997 Q ss_pred ECCCC Q ss_conf 51688 Q gi|254780791|r 215 ARGGG 219 (529) Q Consensus 215 ~RGGG 219 (529) .=|+. T Consensus 73 ~~G~N 77 (185) T 3hp4_A 73 ELGAN 77 (185) T ss_dssp ECCHH T ss_pred ECCCC T ss_conf 15677 No 228 >>2p7n_A Pathogenicity island 1 effector protein; CVR69, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum} (A:) Probab=51.20 E-value=14 Score=15.88 Aligned_cols=113 Identities=16% Similarity=0.067 Sum_probs=65.0 Q ss_pred EEECCCCCC---CHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--ECCCCCHHHHHHCCHHHHHHHHH------HCCCEEE Q ss_conf 972100111---103679999999974100357677758999--51688844422007699999997------4890488 Q gi|254780791|r 176 IFPVKVQGD---ECPKEIANAILQLNTLKEGRTCPRPDIIIL--ARGGGSIEDLWHFNDEMIVRAIA------NSSIPII 244 (529) Q Consensus 176 ~~p~~vQG~---~a~~~i~~ai~~~~~~~~~~~~~~~D~iii--~RGGGS~eDL~~FN~e~laraI~------~~~iPVi 244 (529) +..+.+.|. .+...+++.|+.+.. .+.++.||+ -=+|||. +..+.+.++|. +...||+ T Consensus 231 iavi~~~g~i~~~~~~~~~~~l~~a~~------d~~vkavvlridSpGGs~-----~~s~~i~~~i~~~r~~~~~~Kpvv 299 (407) T 2p7n_A 231 GNKVKLNVDALKAALEKLKKDFSLGDN------LDNKKAVLFPAQSKDGGI-----QGGSESDARKWAKEXGLPDAPPPG 299 (407) T ss_dssp -----CCHHHHHHHHHHHHHHTSCCTT------SCCSTTEEESCCCSSSCC-----CCBCHHHHHHHHHHTTCCCCCTTS T ss_pred CCEEEECHHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCCCCCC-----CCCCHHHHHHHHHHHCCCCCCCCC T ss_conf 872543689999999999975167776------444430016786776533-----467588899999981876467887 Q ss_pred EEECCC---------CCCHHHHH-HHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 520577---------75258988-64123777214567633234677766999998887789988 Q gi|254780791|r 245 SAIGHE---------TDWTLADY-AADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRL 299 (529) Q Consensus 245 sgIGHE---------~D~Tl~D~-VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~ 299 (529) .-+|.- .+.|-||. +|+--.-|=|---....|+...+...+.-..+.+.+.++.. T Consensus 300 ~s~~~~aaSggY~ia~~~s~ad~I~a~p~t~tGSIGv~~~~~~~~~~l~k~gv~~~~i~~~~~~~ 364 (407) T 2p7n_A 300 FSCVQKAADGNWVVVVDXTPIDTXIRDVGALGSGTELELDNAKFQAWQSGFKAQEENLKNTLQTL 364 (407) T ss_dssp CCSEEECTTSSEEEECCCHHHHHHHHHHHHTCCCC-CCCCTTTHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEECCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 33677358886367238527899887512467888875149999999999878888776479999 No 229 >>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:1-107,A:239-285) Probab=50.59 E-value=14 Score=15.81 Aligned_cols=93 Identities=10% Similarity=0.075 Sum_probs=56.2 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -..||||.+. +.--+.++++-+.+ ..++.+.++++.-..+ ...+.++.+... .+|.|||+ T Consensus 8 s~~IgvIipdl~npf~~~ii~gi~~~a~~~Gy~lvI~~~~~d~~----~~~~~i~~l~~~-------~vDGIII~----- 71 (154) T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLA----RSRSCLTLLSGK-------MVDGVITM----- 71 (154) T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH----HHHHHTHHHHTT-------CCSEEEEC----- T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH----HHHHHHHHHHCC-------CCCCCCCC----- T ss_conf 99899996988788999999999999998599899997899989----999987665404-------55423321----- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 444220076999999974890488520577752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) +.+............||||. |+...+..-+++| T Consensus 72 -----~~~~~~~~~~~l~~~IPvVl-id~~~~~~~~~~V 104 (154) T 3c3k_A 72 -----DALSELPELQNIIGAFPWVQ-CAEYDPLSTVSSV 104 (154) T ss_dssp -----CCGGGHHHHHHHHTTSSEEE-ESSCCTTSSSCEE T ss_pred -----CCCCCHHHHHHHCCCCCEEE-EEECCCCCCCCCC T ss_conf -----23432899985036887899-8404787776632 No 230 >>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} (A:) Probab=50.57 E-value=14 Score=15.81 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=80.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCHHHHHH Q ss_conf 00799999999997654012261001631026528999847842589999-99863059758999721001111036799 Q gi|254780791|r 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDI-LQRISCRFPLRVIIFPVKVQGDECPKEIA 191 (529) Q Consensus 113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~-~~~~~~r~p~~~~~~p~~vQG~~a~~~i~ 191 (529) .|.+....+.+.+.|.-.|-. .|.-.-|-.+.+.|.......+.. +.....+. -.+.+.|.--.=-.|.++.+ T Consensus 110 ~g~l~~ai~~~~~~l~i~~~V-----lP~t~~~v~l~a~~~dG~~v~ge~~i~~~~~~i-~~v~~~~~~~~~~~a~p~al 183 (341) T 2p0y_A 110 KSGVFDAVQELSNXXQVDGHV-----YPAANEALTLHGKFSDGTELVGEAEITAAHKSL-ERVWVTDKNGKEPQAVQPVI 183 (341) T ss_dssp --CHHHHHHHHHHHTTCSSEE-----ECC----CCEEECCSSCC-----------CCCC-CCEEEC------CCCCHHHH T ss_pred CCCHHHHHHHHHHHHCCCEEE-----EECCCCCEEEEEEECCCCEEEEEEEEHHCCCCC-CEEEEEECCCCCCCCCHHHH T ss_conf 498889999999985898179-----945478648999977998896467001046787-55887436877888884588 Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEE--EEE----CCCCCCHHHHHHHC Q ss_conf 99999974100357677758999516888444220076999999974890488--520----57775258988641 Q gi|254780791|r 192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPII--SAI----GHETDWTLADYAAD 261 (529) Q Consensus 192 ~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVi--sgI----GHE~D~Tl~D~VAD 261 (529) +||+. -|+||++=|-==..=+=.+-=..++.||.+++-|+| +=+ |.-..+|.+|+|.- T Consensus 184 ~AI~~------------AD~Iv~gPGSl~TSI~P~Llv~gI~eAi~~s~a~kV~I~Nl~~~~get~~~~~~d~v~a 247 (341) T 2p0y_A 184 DAIXA------------ADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIXTQKGETDNFSDADHVRV 247 (341) T ss_dssp HHHHH------------CSEEEECSSCCCCCCHHHHSSHHHHHHHHHCSSEEEEECCSBC--CCSTTCBHHHHHHH T ss_pred HHHHC------------CCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHH T ss_conf 99863------------99899868960776646888999999997488867997568889833369988999999 No 231 >>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} (A:) Probab=50.49 E-value=14 Score=15.80 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=31.5 Q ss_pred CCCEEEEECCCCCHHHHHH---------------CCHHHHHHHHHHCCCEEEE-EECCC Q ss_conf 7758999516888444220---------------0769999999748904885-20577 Q gi|254780791|r 208 RPDIIILARGGGSIEDLWH---------------FNDEMIVRAIANSSIPIIS-AIGHE 250 (529) Q Consensus 208 ~~D~iii~RGGGS~eDL~~---------------FN~e~laraI~~~~iPVis-gIGHE 250 (529) .+|.|||--|+++..|+.. -.+..+.+...+..+||+- --||+ T Consensus 61 ~~dgiil~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PilGIClG~Q 119 (254) T 3fij_A 61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGXQ 119 (254) T ss_dssp TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHH T ss_pred HCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECHHHH T ss_conf 67979976997888543577777445788777889999999999985998786289999 No 232 >>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} (A:1-112) Probab=50.19 E-value=11 Score=16.69 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=25.6 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 8999721001111036799999999741003576777589995168884 Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) ..++||... ++|...++.+++ ..+-++.||||.- T Consensus 58 ~~Vv~P~s~------~dV~~iv~~a~~---------~~~pv~~rggG~~ 91 (112) T 1wvf_A 58 SAAVTATTV------EQVQGVVKICNE---------HKIPIWTISTGRN 91 (112) T ss_dssp SEEEECCSH------HHHHHHHHHHHH---------HTCCEEEESSCCC T ss_pred CEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCCC T ss_conf 779956989------999999999998---------7980999899988 No 233 >>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} (A:) Probab=49.91 E-value=7.2 Score=18.39 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=13.8 Q ss_pred CCCCEEEEEEECCCCEE Q ss_conf 88862799987489479 Q gi|254780791|r 48 HSSGHAYFSLKDNHSRI 64 (529) Q Consensus 48 ~~sGH~Yf~lkd~~a~i 64 (529) .+.|+|||.||+.+.+| T Consensus 30 ~~~g~~rf~Lka~Ngqv 46 (83) T 2k7i_A 30 DKAGEYRFRFKASNGET 46 (83) T ss_dssp CTTSCEEEEECCTTSCC T ss_pred CCCCCEEEEEEECCCCE T ss_conf 88997999999799999 No 234 >>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} (H:) Probab=49.72 E-value=14 Score=15.70 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=47.3 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH-- Q ss_conf 289998478425899999986305975899972100111103679999999974100357677758999516888444-- Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED-- 223 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD-- 223 (529) .||+||--.++- .+|+.+.+++.- +++.++|.. .....+|.||| -|||+..+ T Consensus 3 ~ri~vi~~~~~~-~~~~~~~l~~~g-~~v~~~~~~-----------------------~~l~~~dgvil-pGg~~~~~~~ 56 (200) T 1ka9_H 3 MKALLIDYGSGN-LRSAAKALEAAG-FSVAVAQDP-----------------------KAHEEADLLVL-PGQGHFGQVM 56 (200) T ss_dssp CEEEEECSSCSC-HHHHHHHHHHTT-CEEEEESST-----------------------TSCSSCSEEEE-CCCSCHHHHH T ss_pred CEEEEEECCCCH-HHHHHHHHHHCC-CCEEEECCH-----------------------HHHHHCCEEEE-CCCCCHHHHH T ss_conf 779999789858-999999999879-969998798-----------------------99840898999-6998479998 Q ss_pred --HHHCCHHHHHHHHHHCCCEEEE Q ss_conf --2200769999999748904885 Q gi|254780791|r 224 --LWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 224 --L~~FN~e~laraI~~~~iPVis 245 (529) .+......+.+...+..+||+- T Consensus 57 ~~~~~~~~~~~i~~~~~~~~PilG 80 (200) T 1ka9_H 57 RAFQESGFVERVRRHLERGLPFLG 80 (200) T ss_dssp HTTSSSCTHHHHHHHHHTTCCEEE T ss_pred HHHHHCCCHHHHHHHHHCCCCEEE T ss_conf 777655939998888866980899 No 235 >>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* (A:1-204,A:412-459) Probab=49.33 E-value=15 Score=15.66 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=33.7 Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 99847842589999998630597--5899972100111103679999999974100357677758999516888 Q gi|254780791|r 149 AVITSPTGAVIRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 149 ~vits~~~a~~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) |.|.-|+...|....+.-..++. -..+++|..+ .+|.++++.+... .+=+.+||||. T Consensus 14 g~v~~p~~~~y~~~~~~w~~~~~~~P~~Vv~P~s~------eeV~~iV~~a~~~---------~~~v~vrGgGh 72 (252) T 2bvf_A 14 GEVIYPDDSGFDAIANIWDGRHLQRPSLIARCLSA------GDVAKSVRYACDN---------GLEISVRSGGH 72 (252) T ss_dssp SEEECTTSTTHHHHHCCSCTTCCCCCSEEEECCSH------HHHHHHHHHHHHH---------TCCEEEESSCC T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCH------HHHHHHHHHHHHC---------CCEEEEECCCC T ss_conf 25989898237999978855646788889964999------9999999999987---------97699988996 No 236 >>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} (A:1-116,A:254-304) Probab=49.14 E-value=15 Score=15.63 Aligned_cols=86 Identities=14% Similarity=0.068 Sum_probs=51.0 Q ss_pred CCEEEEEE--CCCHHHHHHHHHHHHH---CC---CEEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 52899984--7842589999998630---59---758999-721001111036799999999741003576777589995 Q gi|254780791|r 145 PKIIAVIT--SPTGAVIRDILQRISC---RF---PLRVII-FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 145 p~~i~vit--s~~~a~~~D~~~~~~~---r~---p~~~~~-~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) ..+||++. +.+..-+.++..-+.+ .+ .+.+.+ +++ +.-+.+-.+.|+.+-.. ++|.|||+ T Consensus 8 ~~~Igvivp~~~~~~f~~~i~~g~~~aa~e~~~~g~~i~i~~~~----~~d~~~q~~~i~~li~~-------~vDgIii~ 76 (167) T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYD----PYDYNSFVATSQAVIEE-------QPDGVXFA 76 (167) T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEEC----SSCHHHHHHHHHHHHTT-------CCSEEEEC T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECC----CCCHHHHHHHHHHHHHC-------CCCEEEEE T ss_conf 85899998799988899999999999999716688799999589----89999999999999975-------99989996 Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC Q ss_conf 168884442200769999999748904885205 Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG 248 (529) Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG 248 (529) --+.. ....+++...+..||||+=-. T Consensus 77 p~~~~-------~~~~~i~~~~~~gIPvV~id~ 102 (167) T 3gbv_A 77 PTVPQ-------YTKGFTDALNELGIPYIYIDS 102 (167) T ss_dssp CSSGG-------GTHHHHHHHHHHTCCEEEESS T ss_pred CCCCH-------HHHHHHHHHHHCCCEEEEEEE T ss_conf 04532-------029999999971977999960 No 237 >>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A (A:33-157,A:224-353) Probab=48.97 E-value=15 Score=15.61 Aligned_cols=29 Identities=14% Similarity=-0.023 Sum_probs=12.0 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 110367999999997410035767775899951688 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) ..+..-+.++++.++..+ .=+|+++-.|| T Consensus 91 ~~~~~K~~r~i~~a~~~~-------~Pli~l~dsgG 119 (255) T 3k8x_A 91 PQEDEFFNKVTEYARKRG-------IPRIYLAANSG 119 (255) T ss_dssp HHHHHHHHHHHHHHHHHT-------CCEEEEECCCC T ss_pred HHHHHHHHHHHHHHHHCC-------CCEEEEECCCC T ss_conf 899999999999999839-------99899965888 No 238 >>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:1-113,A:249-288) Probab=48.91 E-value=15 Score=15.61 Aligned_cols=102 Identities=15% Similarity=0.071 Sum_probs=61.8 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) ++||||... +..-+..+++-+.+ ..++.+.++.+ .+++.+.+...+|+.+-.. ++|.||++=..... T Consensus 2 ~~Igviip~~~~pf~~~i~~gi~~aa~~~Gy~l~i~~~--~s~~d~~~~~~~i~~li~~-------~vDGIIi~~~~~~~ 72 (153) T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS--PSEGDFQSQLQLFEDLSNK-------NYKGIAFAPLSSVN 72 (153) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC--SSTTCHHHHHHHHHHHHTS-------SEEEEEECCSSSST T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCCCCHHHHHHHHHHHHHC-------CCCEEEECCCCCCC T ss_conf 35999979888889999999999999974998999967--8989999999999999975-------99857642543321 Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH-HHCCCC Q ss_conf 4422007699999997489048852057775258988-641237 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADY-AADLRA 264 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~-VAD~Ra 264 (529) .......+.+..||||. |+.+.+..-.++ ..|-++ T Consensus 73 -------~~~~i~~l~~~gIPvV~-id~~~~~~~~~~V~~Dn~~ 108 (153) T 1gud_A 73 -------LVMPVARAWKKGIYLVN-LDEKIDMDNLKKAGGNVEA 108 (153) T ss_dssp -------THHHHHHHHHTTCEEEE-ESSCCCHHHHHHTTCCCSE T ss_pred -------CHHHHHHHHHCCCCEEE-CCCCCCCCCCCCCCCCCCC T ss_conf -------14899999971991762-3777654443345677563 No 239 >>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318) Probab=48.58 E-value=15 Score=15.57 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=74.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC-CCCCCEEEEEECC---CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHH Q ss_conf 99999997654012261001631-0265289998478---42589999998630---59758999721001111036799 Q gi|254780791|r 119 ALEKRKKKLLEEGLFSDQHKNPI-PFIPKIIAVITSP---TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIA 191 (529) Q Consensus 119 ~~e~lk~~L~~eGlfd~~~k~~l-P~~p~~i~vits~---~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~ 191 (529) ..++..+-..+-||......+.+ ..-.+.||+|.+. ++--+.+++.-+.. +..+.+.++.+. +.+.... T Consensus 34 Tr~rV~~~a~elgY~~~~~a~~l~~~~~~~I~ivi~~~~~~~~f~~~ii~gi~~~~~~~gy~~~i~~~~----~d~~~~~ 109 (185) T 3dbi_A 34 TKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEKGRQLLLADGK----HSAEEER 109 (185) T ss_dssp --------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECT----TSHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCC----CCHHHHH T ss_conf 999999999995898787788651178747999973045555139999999999999718478732578----8778899 Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC Q ss_conf 9999997410035767775899951688844422007699999997489048852057775258988641 Q gi|254780791|r 192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529) Q Consensus 192 ~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529) ..++.+... ++|.|||+=. ..+++.+.+.+....+||+. |+...+..-+|.|.. T Consensus 110 ~~i~~l~~~-------~vdGiIi~~~--------~~~~~~~~~~l~~~~iPvV~-id~~~~~~~~~sV~~ 163 (185) T 3dbi_A 110 QAIQYLLDL-------RCDAIXIYPR--------FLSVDEIDDIIDAHSQPIXV-LNRRLRKNSSHSVWC 163 (185) T ss_dssp HHHHHHHHT-------TCSEEEECCS--------SSCHHHHHHHHHHCSSCEEE-ESSCCSSSGGGEECB T ss_pred HHHHHHHHC-------CCCEEEECCC--------CCCHHHHHHHHHHCCCCEEE-ECCCCCCCCCCEEEC T ss_conf 999999955-------9887997588--------77758899999854997899-367666777852532 No 240 >>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:) Probab=48.07 E-value=15 Score=15.51 Aligned_cols=74 Identities=8% Similarity=0.068 Sum_probs=45.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH-- Q ss_conf 289998478425899999986305975899972100111103679999999974100357677758999516888444-- Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED-- 223 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD-- 223 (529) .+|+||.=++ .+.|+.+.++++- +++.+++.. .....+|.|||.=|.++.+| T Consensus 3 ~~I~vi~~~~--~~~~~~~~l~~~g-~~v~~~~~~-----------------------~~l~~~dgiil~GG~~~~~~~~ 56 (191) T 2ywd_A 3 GVVGVLALQG--DFREHKEALKRLG-IEAKEVRKK-----------------------EHLEGLKALIVPGGESTTIGKL 56 (191) T ss_dssp CCEEEECSSS--CHHHHHHHHHTTT-CCCEEECSG-----------------------GGGTTCSEEEECSSCHHHHHHH T ss_pred CEEEEEECCC--CHHHHHHHHHHCC-CCEEEECCH-----------------------HHHHCCCEEEECCCCHHHHHHH T ss_conf 6699997786--7999999999879-969998998-----------------------9961558579769765999987 Q ss_pred -HHHCCHHHHHHHHHHCCCEEEE Q ss_conf -2200769999999748904885 Q gi|254780791|r 224 -LWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 224 -L~~FN~e~laraI~~~~iPVis 245 (529) .|.-....+.+.+++..+||+- T Consensus 57 ~~~~~~~~~~~~~~~~~~~PilG 79 (191) T 2ywd_A 57 AREYGIEDEVRKRVEEGSLALFG 79 (191) T ss_dssp HHHTTHHHHHHHHHHTTCCEEEE T ss_pred HHHHCCHHHHHHHHCCCCCEEEE T ss_conf 34300101200000045415899 No 241 >>1pk6_C C1Q, complement C1Q subcomponent, C chain precursor; complement system, immunology, jellyroll, IGG, immune system; 1.85A {Homo sapiens} (C:) Probab=47.63 E-value=15 Score=15.45 Aligned_cols=59 Identities=8% Similarity=0.164 Sum_probs=31.6 Q ss_pred CCCCCCCCCCEEEEEEE-CCCCEEEEEEECCCCCCC-----------------CCCCCCCCEEEEEEE--EEEECCCCEE Q ss_conf 05435688862799987-489479999973521058-----------------668145988999999--6675288437 Q gi|254780791|r 42 SGYRGIHSSGHAYFSLK-DNHSRIDAIIWKGTLNKI-----------------EFLPEEGIEFLVIGK--ITTFPGSSKY 101 (529) Q Consensus 42 s~~~~~~~sGH~Yf~lk-d~~a~i~~~~~~~~~~~~-----------------~~~~~~G~~v~~~g~--~~~y~~~g~~ 101 (529) .-|+ ++-+|.+||+.- .....+...++++....+ -..++.||+|.+... ..+|...+.| T Consensus 40 G~Ft-~p~~GvY~F~~~i~~~~~~~v~L~~n~~~~~~~~~~~~~~~~~~S~s~iL~L~~GD~V~l~l~~g~~~~~~~~~~ 118 (129) T 1pk6_C 40 GKFT-CKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSD 118 (129) T ss_dssp TEEE-CSSCEEEEEEEEEEESSCEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEEEEEECCCCCTTCC T ss_pred CEEE-CCCCCEEEEEEEECCCCEEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEECCCCCC T ss_conf 9797-624778999998326750899999888889999666888652353159999699999999996885141467996 No 242 >>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} (A:) Probab=47.61 E-value=13 Score=16.01 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.5 Q ss_pred CCCEEEEEEECCCCEE Q ss_conf 8862799987489479 Q gi|254780791|r 49 SSGHAYFSLKDNHSRI 64 (529) Q Consensus 49 ~sGH~Yf~lkd~~a~i 64 (529) ..|.|||.|++.+..+ T Consensus 11 ~~g~~rfrL~~~~G~~ 26 (118) T 2k49_A 11 SNDQFKFVLKAGNGEV 26 (118) T ss_dssp TTSCEEEEEECSSSCE T ss_pred CCCCEEEEEECCCCCE T ss_conf 8997999999399988 No 243 >>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-103) Probab=47.08 E-value=16 Score=15.39 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=25.2 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 899972100111103679999999974100357677758999516888 Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ..+++|... ++|.+.++.++. ..+=|..||||. T Consensus 47 ~aVv~P~s~------eeV~~iv~~a~~---------~~ipv~~rggGt 79 (103) T 1f0x_A 47 LAVVFPGSL------LELWRVLKACVT---------ADKIILMQAANT 79 (103) T ss_dssp SEEECCSSH------HHHHHHHHHHHH---------TTCEEEEESSCC T ss_pred CEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCC T ss_conf 679950999------999999999998---------798299978996 No 244 >>2ppv_A Uncharacterized protein; NP_764104.1, structural genomics, joint center for structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228} (A:) Probab=46.96 E-value=16 Score=15.37 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=76.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHH Q ss_conf 99999999976540122610016310265289998478425899999986305975-89997210011110367999999 Q gi|254780791|r 117 LTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAIL 195 (529) Q Consensus 117 ~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~ 195 (529) ....+.+.+.|.-.| +=.|.-..|-++.+.+....-..+.+ .+-...-|. .+.+-|..+ .+..+.++||+ T Consensus 106 ~~ai~~~~~~l~v~g-----~VlP~s~~~~~l~a~~~dG~~~~gE~-~I~~~~~~i~~v~~~~~~~---~~~p~al~AI~ 176 (332) T 2ppv_A 106 GHAIKELSKVLNIKG-----QVIPSTNASVQLNAVXEDGEIVHGET-NIPKTHKKIDRVFLEPSDV---EPXNEAIEALE 176 (332) T ss_dssp HHHHHHHHHHTTCSS-----EEEESCSSCCEEEEEETTSCEEESTT-TSSSSCSCEEEEEEESCCC---CCCHHHHHHHH T ss_pred HHHHHHHHHHHCCCC-----CEECCCCCCEEEEEEECCCCEEECEE-EEECCCCCCEEEEECCCCC---CCCHHHHHHHH T ss_conf 799999999868995-----44257389548999986998880256-1101456632565025777---78867999985 Q ss_pred HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEE--EEECC---CC-CCHHHHHHH Q ss_conf 9974100357677758999516888444220076999999974890488--52057---77-525898864 Q gi|254780791|r 196 QLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPII--SAIGH---ET-DWTLADYAA 260 (529) Q Consensus 196 ~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVi--sgIGH---E~-D~Tl~D~VA 260 (529) . -|+||++=|-==..=+-++--..++.||.+++-|+| +=++- || .+|.+|+|. T Consensus 177 ~------------AD~IvigPGSlyTSIiP~Llv~gI~eAI~~s~a~kV~I~Ni~~~~Get~g~~~~d~v~ 235 (332) T 2ppv_A 177 Q------------ADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVXTQPGETDNYDVKEHID 235 (332) T ss_dssp H------------CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCCSCEEEECCSBCCTTTCTTCCHHHHHH T ss_pred C------------CCEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHH T ss_conf 2------------9989998996076541054260589998658885797306777753336999999999 No 245 >>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str} (A:37-156) Probab=46.82 E-value=16 Score=15.36 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=33.4 Q ss_pred CEEEEEECCC--HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 2899984784--25899999986305975899972100111103679999999974100357677758999516 Q gi|254780791|r 146 KIIAVITSPT--GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 146 ~~i~vits~~--~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) ++|.|.|... =.++.||++.+...- .+.+-.|+-.-.-.--+.|.+||-..+.-+ -| +||+|| T Consensus 1 kkivVat~N~kKf~vi~~il~~~~~~~-~~ml~i~Tn~aDltR~PAi~KgliAvD~sd-------AD-lvIaRG 65 (120) T 3brc_A 1 RRTVVPNWNAEKVDAINDVLRSFNLRE-AEHLQFNTNWADLTRXPAVTKALXALDISG-------AD-LVIARG 65 (120) T ss_dssp SCEEECCCCHHHHHHHHHHHHHTTCCC-CEECCSCCGGGGGSSSHHHHHHHHHHHHHC-------CS-EEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCC-CEEEECCCCCCCCCCCCHHHHHHEEEECCC-------CC-EEEECC T ss_conf 549985597167799999999736864-125765687200113806653311452368-------84-799605 No 246 >>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:) Probab=46.74 E-value=16 Score=15.35 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=58.3 Q ss_pred CCCCEEEEEECC---CHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 265289998478---425899999986305975-8999721001111036799999999741003576777589995168 Q gi|254780791|r 143 FIPKIIAVITSP---TGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 143 ~~p~~i~vits~---~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) .-|++|+||-.. +..++.=+.+.....|++ .+.-....|.|..+-.++.+. . ..+|++++++-- T Consensus 20 ~~p~~iAVvGas~~~~~~g~~v~~~l~~~G~~V~~V~p~~~~i~g~~~~~sl~el-------p-----~~~Dlv~i~~p~ 87 (144) T 2d59_A 20 TRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDI-------P-----DKIEVVDLFVKP 87 (144) T ss_dssp HHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGC-------S-----SCCSEEEECSCH T ss_pred HCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCC-------C-----CCCCEEEEEECH T ss_conf 6689499991159999825999999997899899989733300797456642014-------6-----765079998588 Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH Q ss_conf 884442200769999999748904885205777525898864 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA 260 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529) - .-..+++.+.+..+..+--+-|-.+..+.++.. T Consensus 88 ~--------~~~~i~~e~~~~g~k~v~~~~~g~~e~~~~~a~ 121 (144) T 2d59_A 88 K--------LTMEYVEQAIKKGAKVVWFQYNTYNREASKKAD 121 (144) T ss_dssp H--------HHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHH T ss_pred H--------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH T ss_conf 9--------999999999972999999942644999999999 No 247 >>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB} (A:) Probab=46.38 E-value=16 Score=15.31 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=63.3 Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 10265289998478425899999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 141 IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 141 lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) +..-+.+|-||-. ....++++...-..|++.+.... +-..|++.+... .||+||+- T Consensus 3 ~~~~~~~VLiVdd--~~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~l~~~-------~~dlii~D----- 58 (154) T 3gt7_A 3 LSNRAGEILIVED--SPTQAEHLKHILEETGYQTEHVR----------NGREAVRFLSLT-------RPDLIISD----- 58 (154) T ss_dssp ----CCEEEEECS--CHHHHHHHHHHHHTTTCEEEEES----------SHHHHHHHHTTC-------CCSEEEEE----- T ss_pred CCCCCCCEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHCCC-------CCCEEEEE----- T ss_conf 9999990999989--99999999999998799999807----------727787642265-------54346761----- Q ss_pred HHHHHHCCHHHHHHHHHHC----CCEEEEEECCCCCCHHHHHH Q ss_conf 4442200769999999748----90488520577752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANS----SIPIISAIGHETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~----~iPVisgIGHE~D~Tl~D~V 259 (529) -+|-..|-.++++.|... .+|||-=.+++......... T Consensus 59 -~~lp~~dg~el~~~ir~~~~~~~~pii~lt~~~~~~~~~~~~ 100 (154) T 3gt7_A 59 -VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSL 100 (154) T ss_dssp -SCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHH T ss_pred -CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH T ss_conf -144788778999999855235677089960689999999999 No 248 >>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333) Probab=45.83 E-value=16 Score=15.24 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=51.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCC-CCCCEEEEEEC-CCHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHH Q ss_conf 9999999976540122610016310-26528999847-8425899999986305---97589997210011110367999 Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNPIP-FIPKIIAVITS-PTGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIAN 192 (529) Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~lP-~~p~~i~vits-~~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ 192 (529) ...++..+-+++-||.-....+.+. .-...||+|.+ .+.--+.++++-+.+. .++.++++++ ........+ T Consensus 36 ~Tr~rV~~aa~elGY~pn~~ar~l~~~ks~~Igviip~~~npff~~ii~gi~~~a~~~g~~lii~~~--~~~~~~~~~-- 111 (205) T 3jvd_A 36 QTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEA--NSVQAQDVV-- 111 (205) T ss_dssp ----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC--CSHHHHHHH-- T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCHHHHHH-- T ss_conf 9999999999996898688888750286617766511345633666666678787764301233333--221012332-- Q ss_pred HHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 99999741003576777589995 Q gi|254780791|r 193 AILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 193 ai~~~~~~~~~~~~~~~D~iii~ 215 (529) ++.+... .+|.||+. T Consensus 112 -le~l~~~-------~vdGIIi~ 126 (205) T 3jvd_A 112 -MESLISI-------QAAGIIHV 126 (205) T ss_dssp -HHHHHHH-------TCSEEEEC T ss_pred -HHCCCCC-------CCCCCCCC T ss_conf -2002221-------10112467 No 249 >>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} (A:1-90,A:197-282) Probab=45.67 E-value=16 Score=15.22 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=80.6 Q ss_pred EEEEEEEEEEEC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 379999971016---80079999999999765401226100163102652899984784258999999863059758999 Q gi|254780791|r 100 KYQIIIESLIPS---GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVII 176 (529) Q Consensus 100 ~~ql~v~~i~~~---g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~ 176 (529) .+.+++.+||=. ..|.+....++..++|.+.|+ +++++|+.+-..+.++++-+.-..|+..++ T Consensus 4 ~~k~i~~DiDGTl~~~~~~i~~~~~~al~~L~~~Gi--------------~lvi~Tgr~~~~~~~~~~~l~i~~~~~~~I 69 (176) T 1rkq_A 4 AIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGV--------------NVVLTTGRPYAGVHNYLKELHMEQPGDYCI 69 (176) T ss_dssp CCCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTC--------------EEEEECSSCGGGTHHHHHHTTCCSTTCEEE T ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC--------------EEEEECCCCHHHHHHHHHHHCCCCCCCEEE T ss_conf 876999967766538979519999999999998899--------------999998998899999999847768887599 Q ss_pred -------EE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf -------72---10011110367999999997410035767775899951688844422007699999997489048852 Q gi|254780791|r 177 -------FP---VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 177 -------~p---~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg 246 (529) |. -.+.-.....+=..+|..+...- ....-+++.++=|. ||..+. ....++|.-| T Consensus 70 ~~nGa~i~~~~~~~~~~~~~~~~K~~~l~~l~~~~---~~~~~~~~~iGD~~---------nD~~m~---~~a~~~v~~~ 134 (176) T 1rkq_A 70 TYNGALVQKAADGSTVAQTALVNKGTGVKSLADVL---GIKPEEIMAIGDQE---------NDIAMI---EYAGVGVAVD 134 (176) T ss_dssp EGGGTEEEETTTCCEEEECCBCSHHHHHHHHHHHH---TCCGGGEEEEECSG---------GGHHHH---HHSSEEEECT T ss_pred ECCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHC---CCCHHHEEEEECCH---------HHHHHH---HHCCCEEEEC T ss_conf 73861565044300343034772678999999870---98766779994876---------469999---8689179967 Q ss_pred ECCCCCCHHHHHHHCC Q ss_conf 0577752589886412 Q gi|254780791|r 247 IGHETDWTLADYAADL 262 (529) Q Consensus 247 IGHE~D~Tl~D~VAD~ 262 (529) -|++.=...+|+|++. T Consensus 135 ~a~~~~~~~a~~i~~~ 150 (176) T 1rkq_A 135 NAIPSVKEVANFVTKS 150 (176) T ss_dssp TSCHHHHHHCSEECCC T ss_pred CCCHHHHHHCCEECCC T ss_conf 9889999858987088 No 250 >>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} (A:1-73) Probab=45.47 E-value=16 Score=15.20 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=35.7 Q ss_pred EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEE Q ss_conf 899999705435688862799987489479999973521058668145988999 Q gi|254780791|r 35 VCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLV 88 (529) Q Consensus 35 ~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~ 88 (529) --..|-|.. . + ++|+|-...|....+.|.. |+++++-+..|--||.|++ T Consensus 9 ~~~~G~Vi~--~-~-~~~y~V~~~d~~~~~~c~~-RG~lr~~~~~~~VGD~V~~ 57 (73) T 1u0l_A 9 LRRRGIVVS--F-H-SNMVTVEDEETGERILCKL-RGKFRLQNLKIYVGDRVEY 57 (73) T ss_dssp CCEEEEEEE--E-E-TTEEEEEETTTCCEEEEEE-CGGGTTTTCCCCTTCEEEE T ss_pred CCCEEEEEE--E-E-CCEEEEEECCCCEEEEEEE-CCEECCCCCCCEECEEEEE T ss_conf 741179999--9-7-9899999789991999994-4322058998000208999 No 251 >>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (I:) Probab=45.34 E-value=13 Score=16.02 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=22.5 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 11110367999999997410035767775899951688844 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) |-...-..|..-+...+..+ .||+.+.++|||=.. T Consensus 38 ~~~~~r~~v~~Pl~~~~~~~------~~DI~~~V~GGG~sg 72 (128) T 2vqe_I 38 QGLVRAVAALEPLRAVDALG------RFDAYITVRGGGKSG 72 (128) T ss_dssp SSCSSGGGGGHHHHHHTCST------TEEEEEEEESSCHHH T ss_pred CHHHHHHHHHHHHHHHCCCC------CEEEEEEEECCCCHH T ss_conf 17789999876654212257------426899995598510 No 252 >>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} (A:1-83,A:191-233) Probab=45.20 E-value=17 Score=15.17 Aligned_cols=45 Identities=7% Similarity=0.094 Sum_probs=32.0 Q ss_pred HHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCCHHHHHHHHHHHH Q ss_conf 9997654012261001631026----52899984784258999999863 Q gi|254780791|r 123 RKKKLLEEGLFSDQHKNPIPFI----PKIIAVITSPTGAVIRDILQRIS 167 (529) Q Consensus 123 lk~~L~~eGlfd~~~k~~lP~~----p~~i~vits~~~a~~~D~~~~~~ 167 (529) .-.+|.++|++++.-...++.. -.-+||+....-+.-++|++=|. T Consensus 62 ~~~~l~~~Gli~~~~~~~l~~n~~~i~~~~~~~~~~~~~~a~~f~~fl~ 110 (126) T 1amf_A 62 WMDYAVDKKAIDTATRQTLLGNHKKVEYPVAVVEGHNNATVKAFYDYLK 110 (126) T ss_dssp HHHHHHHTTCBCGGGCEEEEEESCCEEEEEEEBTTCCSHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCCCEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHC T ss_conf 6899887247786551232112617688899987999899999999978 No 253 >>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} (A:1-143) Probab=45.08 E-value=17 Score=15.15 Aligned_cols=87 Identities=15% Similarity=0.170 Sum_probs=54.5 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 02652899984784258999999863059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) +.-|++|-||-.. ...+.+++.+-..|+++++-. +.+-.+|++.+... .||+||+- T Consensus 10 ~~~~~~VLIVDD~--~~~r~~l~~~L~~~g~~vv~~---------a~~~~eal~~l~~~-------~~DliilD------ 65 (143) T 1s8n_A 10 AAVPRRVLIAEDE--ALIRMDLAEMLREEGYEIVGE---------AGDGQEAVELAELH-------KPDLVIMD------ 65 (143) T ss_dssp -CCCCEEEEECSS--HHHHHHHHHHHHHTTCEEEEE---------ESSHHHHHHHHHHH-------CCSEEEEE------ T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHHCCCEEEEE---------ECCHHHHHHHHHHC-------CCCEEEEE------ T ss_conf 8878889998298--999999999999869979999---------89999999999837-------99999996------ Q ss_pred HHHHHCCHHHHHHHHH-HCCCEEEEEECCCCC Q ss_conf 4422007699999997-489048852057775 Q gi|254780791|r 222 EDLWHFNDEMIVRAIA-NSSIPIISAIGHETD 252 (529) Q Consensus 222 eDL~~FN~e~laraI~-~~~iPVisgIGHE~D 252 (529) -+|--+|-.++++.|- .+++|||.=.++..+ T Consensus 66 ~~lP~~dG~el~~~lr~~~~~pii~lt~~~~~ 97 (143) T 1s8n_A 66 VKMPRRDGIDAASEIASKRIAPIVVLTAFSQR 97 (143) T ss_dssp SSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGH T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEECCCCH T ss_conf 40458607999999985699998999567889 No 254 >>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} (A:1-126) Probab=45.03 E-value=17 Score=15.15 Aligned_cols=49 Identities=8% Similarity=0.158 Sum_probs=38.1 Q ss_pred HHHHHHHHHHHHHCC-C-E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 258999999863059-7-5-89997210011110367999999997410035767775899951688844 Q gi|254780791|r 156 GAVIRDILQRISCRF-P-L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 156 ~a~~~D~~~~~~~r~-p-~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) -.++.+++..+.+++ | + .+++|.+..-|+..+.| .+|++||.-+..... T Consensus 13 ~~~l~~~~~~l~~~~~~~i~~i~LfGS~aRG~~~~~S------------------DiDl~vi~~~~~~~~ 64 (126) T 1kny_A 13 MKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYS------------------DIEMMCVMSTEEAEF 64 (126) T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTC------------------CEEEEEEESSTTCEE T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC------------------CEEEEEEECCCCCCH T ss_conf 9999999999998827355799998776589999999------------------867999975886430 No 255 >>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633} (A:) Probab=44.85 E-value=17 Score=15.13 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=47.2 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) ..+|-||-... ....++...-..+++++..... --.|+..+... .||+||+ |+ T Consensus 4 ~~riLiVdD~~--~~~~~l~~~l~~~G~~v~~~~~----------~~~al~~l~~~-------~~dlill--------D~ 56 (137) T 3cfy_A 4 RPRVLLVEDST--SLAILYKQYVKDEPYDIFHVET----------GRDAIQFIERS-------KPQLIIL--------DL 56 (137) T ss_dssp CCEEEEECSCT--THHHHHHHHTTTSSSEEEEESS----------HHHHHHHHHHH-------CCSEEEE--------CS T ss_pred CCEEEEEECCH--HHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEE--------CC T ss_conf 98699997999--9999999999977998999700----------89999887546-------7628985--------03 Q ss_pred H--HCCHHHHHHHHHHCC--CEEEEEECCCC Q ss_conf 2--007699999997489--04885205777 Q gi|254780791|r 225 W--HFNDEMIVRAIANSS--IPIISAIGHET 251 (529) Q Consensus 225 ~--~FN~e~laraI~~~~--iPVisgIGHE~ 251 (529) . ..|-.++++.|-+.+ +|||-=.|+.. T Consensus 57 ~lp~~~g~~l~~~ir~~~~~~piI~lt~~~~ 87 (137) T 3cfy_A 57 KLPDMSGEDVLDWINQNDIPTSVIIATAHGS 87 (137) T ss_dssp BCSSSBHHHHHHHHHHTTCCCEEEEEESSCC T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 4789972899999997589983899983699 No 256 >>3i1m_I 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ... (I:) Probab=44.67 E-value=14 Score=15.83 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=13.2 Q ss_pred CCCCCEEEEECCCCCHH Q ss_conf 67775899951688844 Q gi|254780791|r 206 CPRPDIIILARGGGSIE 222 (529) Q Consensus 206 ~~~~D~iii~RGGGS~e 222 (529) ...||+.|.++|||-.. T Consensus 58 ~~~~di~~~v~GGG~~g 74 (130) T 3i1m_I 58 VEKLDLYITVKGGGISG 74 (130) T ss_dssp SSSCEEEEEEESSCHHH T ss_pred CCCEEEEEEEECCCCCH T ss_conf 65146999984698214 No 257 >>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} (A:) Probab=44.60 E-value=17 Score=15.10 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=60.2 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) +.+|-|| .+...+.+++..+-.++++.+.... +-.+|++.+... ..||+||+ |+ T Consensus 5 ~~~ILiV--dD~~~~~~~l~~~L~~~g~~v~~a~----------~~~eal~~l~~~------~~~dlvi~--------D~ 58 (132) T 2rdm_A 5 AVTILLA--DDEAILLLDFESTLTDAGFLVTAVS----------SGAKAIEXLKSG------AAIDGVVT--------DI 58 (132) T ss_dssp SCEEEEE--CSSHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHTT------CCCCEEEE--------ES T ss_pred CCEEEEE--ECCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC------CCCCEEEE--------EE T ss_conf 9999999--7999999999999998799999989----------889999999838------99779998--------40 Q ss_pred -HH--CCHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHH Q ss_conf -20--0769999999748--904885205777525898864 Q gi|254780791|r 225 -WH--FNDEMIVRAIANS--SIPIISAIGHETDWTLADYAA 260 (529) Q Consensus 225 -~~--FN~e~laraI~~~--~iPVisgIGHE~D~Tl~D~VA 260 (529) ++ .|-.++++.|-.. .+|||.--|+........-+- T Consensus 59 ~lp~~~dG~el~~~ir~~~~~~pii~~t~~~~~~~~~~~~~ 99 (132) T 2rdm_A 59 RFCQPPDGWQVARVAREIDPNXPIVYISGHAALEWASNGVP 99 (132) T ss_dssp CCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCT T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCC T ss_conf 26898779999999998599995899977799899997172 No 258 >>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} (B:) Probab=44.58 E-value=17 Score=15.09 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=28.7 Q ss_pred CCCCCEEEEECCCCCHHHHHH---CCHHHHHHHHHHCCCEEE Q ss_conf 677758999516888444220---076999999974890488 Q gi|254780791|r 206 CPRPDIIILARGGGSIEDLWH---FNDEMIVRAIANSSIPII 244 (529) Q Consensus 206 ~~~~D~iii~RGGGS~eDL~~---FN~e~laraI~~~~iPVi 244 (529) ..++|.|||.=|+++..|... --...+++...+..+||+ T Consensus 40 l~~~D~iil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~Pil 81 (201) T 1gpw_B 40 NDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVV 81 (201) T ss_dssp SSCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEE T ss_pred HHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEE T ss_conf 510585797899827788999886461889999986088465 No 259 >>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} (A:) Probab=44.52 E-value=17 Score=15.09 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=6.5 Q ss_pred CCEEEE-----ECCCCCH Q ss_conf 758999-----5168884 Q gi|254780791|r 209 PDIIIL-----ARGGGSI 221 (529) Q Consensus 209 ~D~iii-----~RGGGS~ 221 (529) +|.+|+ ...+|++ T Consensus 251 ~~~iI~TKlDe~~~~G~~ 268 (306) T 1vma_A 251 VTGIILTKLDGTAKGGIT 268 (306) T ss_dssp CCEEEEECGGGCSCTTHH T ss_pred CCEEEEEECCCCCCHHHH T ss_conf 987999703588950499 No 260 >>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str} (A:143-336) Probab=44.37 E-value=17 Score=15.07 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH-HCCCEEEEE--ECCCCCC Q ss_conf 0367999999997410035767775899951688844422007699999997-489048852--0577752 Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA-NSSIPIISA--IGHETDW 253 (529) Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~-~~~iPVisg--IGHE~D~ 253 (529) .+..|-+.|..+.... ..+++-.||++|=-+-..+=+.+.-+++.+..+ ...+||+.+ +||-.+. T Consensus 101 ~~~~idR~L~~L~~~G---~f~~~~gii~G~f~~~~~~~~~~~~~~ii~~~~~~~~iPv~~~~~~GH~~~~ 168 (194) T 3gjz_A 101 DAATIERSFSFLKING---VFDKVSGIILGKHEQFDDCGTNRKPYEILLEVLQNQRIPLLADFDCCHTHPX 168 (194) T ss_dssp BHHHHHHHHHHHHHTT---HHHHCSEEEEECCTTCBCTTSCCCHHHHHHHHHTTCCCCEEEEESCSSSBSC T ss_pred CCCHHHHHHHHHHHCC---CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCC T ss_conf 8658999999999769---8545858999357557677887389999999973189828989998689986 No 261 >>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (I:) Probab=44.31 E-value=12 Score=16.41 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=12.2 Q ss_pred CCCCEEEEECCCCCHH Q ss_conf 7775899951688844 Q gi|254780791|r 207 PRPDIIILARGGGSIE 222 (529) Q Consensus 207 ~~~D~iii~RGGGS~e 222 (529) .+|||.+.++|||-.. T Consensus 126 ~~~dv~~~v~GGG~sg 141 (197) T 3bbn_I 126 TNYDVFVKAHGGGLSG 141 (197) T ss_dssp TTEEEEEEEESSCHHH T ss_pred CCCEEEEEEECCCCCC T ss_conf 7620699995189654 No 262 >>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202) Probab=44.26 E-value=17 Score=15.06 Aligned_cols=88 Identities=8% Similarity=-0.015 Sum_probs=53.2 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 52899984784258999999863059758999721------001111036799999999741003576777589995168 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPV------KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~------~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) .+||||+|+=.-.+-+-+..-+... +++|.-+-. .--|.-.+.+|.+++..+... .+..|+|+|.-.+ T Consensus 1 a~rial~TPY~~~v~~~~~~~~~~~-G~eV~~~~~lg~~~~~~ia~i~~~~i~~~~~~~~~d-----~p~adAi~isCTn 74 (95) T 2dgd_A 1 VRKLWIGTPYIKERTLEEVEWWRNK-GFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNE-----VLKADAVYIACTA 74 (95) T ss_dssp CCEEEEEESSCHHHHHHHHHHHHTT-TCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHH-----HTTSSEEEECCTT T ss_pred CCCEEEECCCCHHHHHHHHHHHHHC-CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCC T ss_conf 9972885577706579999999967-905853002475654210239999999999985401-----3468789994158 Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 884442200769999999748904885 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVis 245 (529) =..-|+ +.+.=....+|||| T Consensus 75 l~t~~~-------i~~lE~~lg~PVis 94 (95) T 2dgd_A 75 LSTYEA-------VQYLHEDLDXPVVS 94 (95) T ss_dssp SCCTTH-------HHHHHHHHTSCEEE T ss_pred CCHHHH-------HHHHHHHHCCCEEE T ss_conf 647899-------99999998989997 No 263 >>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} (A:) Probab=42.98 E-value=18 Score=14.90 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=14.7 Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 76999999974890488520577752 Q gi|254780791|r 228 NDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 228 N~e~laraI~~~~iPVisgIGHE~D~ 253 (529) +.++.+..|..- +.||+|||+--- T Consensus 26 s~~Ea~eli~~e--~~iSaIGH~aTA 49 (109) T 2j6b_A 26 TIQEAKELVTKE--QFTSAIGHQATA 49 (109) T ss_dssp CHHHHHHHHHHS--CEEECBCSHHHH T ss_pred CHHHHHHHHCCC--CEEEEECCHHHH T ss_conf 899999875257--647730649899 No 264 >>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, archaea, crenarchaea, hypothetical protein; 2.39A {Sulfolobus turreted icosahedral virus} (A:) Probab=42.39 E-value=10 Score=17.10 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=5.8 Q ss_pred CCEEEEEECCC Q ss_conf 90488520577 Q gi|254780791|r 240 SIPIISAIGHE 250 (529) Q Consensus 240 ~iPVisgIGHE 250 (529) .-+++|+|||+ T Consensus 42 ~~~~vSaIGH~ 52 (122) T 2j85_A 42 DGTLINAIGHD 52 (122) T ss_dssp TTCEEECCCCH T ss_pred CCCEEEEECCH T ss_conf 57459853649 No 265 >>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277) Probab=42.26 E-value=18 Score=14.82 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=62.9 Q ss_pred CCCCEEEEEECC---CHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 265289998478---425899999986305---97589997210011110367999999997410035767775899951 Q gi|254780791|r 143 FIPKIIAVITSP---TGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529) Q Consensus 143 ~~p~~i~vits~---~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529) .--+.||||.+. +.--+.++++-+.+. ..+.+.++++.-. +....+.++.+... ++|.|||.= T Consensus 17 ~~s~~Igiiip~~~~~~~f~~~i~~gi~~~~~~~gy~v~i~~~~~d----~~~~~~~i~~l~~~-------~vDGiIi~~ 85 (144) T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARXAEEKGRQLLLADGKHS----AEEERQAIQYLLDL-------RCDAIXIYP 85 (144) T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTS----HHHHHHHHHHHHHT-------TCSEEEEEC T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEECC T ss_conf 8999799995886546879999999999999985999999968999----89999999988634-------653024403 Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 6888444220076999999974890488520577752589886 Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) - ..+++.+...+-...+|++. ||+..+..=.|+| T Consensus 86 ~--------~~~~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V 119 (144) T 3brq_A 86 R--------FLSVDEIDDIIDAHSQPIXV-LNRRLRKNSSHSV 119 (144) T ss_dssp S--------SSCHHHHHHHHHTCSSCEEE-ESCCCSSSGGGEE T ss_pred C--------CCCHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCC T ss_conf 3--------32117889998751798522-2222345332223 No 266 >>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* (G:558-872,G:1038-1105) Probab=42.15 E-value=18 Score=14.81 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=24.3 Q ss_pred CCEEEE--ECCCC-----CHHHHHHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 758999--51688-----844422007699999997489048852057 Q gi|254780791|r 209 PDIIIL--ARGGG-----SIEDLWHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 209 ~D~iii--~RGGG-----S~eDL~~FN~e~laraI~~~~iPVisgIGH 249 (529) +|.+|+ .-||| |.+|++.--...+........+|||+|-|= T Consensus 160 ~D~iiv~g~egGgh~G~~~~~~~~~~~~al~~~i~~~~~ipviaagG~ 207 (383) T 2uva_G 160 PTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGF 207 (383) T ss_dssp TTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSC T ss_pred CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999779998378877766610014799999999857897799976876 No 267 >>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} (A:1-88,A:185-228) Probab=42.05 E-value=18 Score=14.79 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=41.6 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 026528999847842589999998630597-58999721001111036799999999741003576777589995 Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) +.-.-+||+..|.....+-+++...+++|| +++.+.... ..++..+|.. ..+|+.|+. T Consensus 12 ~~G~LrIG~~~s~a~~~Lp~~L~~F~~~~P~I~I~L~~~~------s~~l~~~L~~----------g~lDlaI~~ 70 (132) T 2fyi_A 12 TSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGT------PQEIATLLQN----------GEADIGIAS 70 (132) T ss_dssp CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECC------HHHHHHHHHH----------TSCSEEEES T ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECC------HHHHHHHHHH----------CCCCEEEEE T ss_conf 9707999976899999999999999998899789998353------3889988753----------033235542 No 268 >>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynthesis, oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* (A:1-218,A:456-495) Probab=42.03 E-value=18 Score=14.79 Aligned_cols=107 Identities=24% Similarity=0.257 Sum_probs=57.2 Q ss_pred EEEECCCHHHHHHHHHHHHH--CCC-----E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC- Q ss_conf 99847842589999998630--597-----5-89997210011110367999999997410035767775899951688- Q gi|254780791|r 149 AVITSPTGAVIRDILQRISC--RFP-----L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG- 219 (529) Q Consensus 149 ~vits~~~a~~~D~~~~~~~--r~p-----~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG- 219 (529) .++++++..-+..+++.-.. +|. . ..+++|..+ ++|.++++.+.+ ..+-|.+|||| T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~------eev~~~Vk~a~~---------~~~~v~~rGgGh 79 (258) T 3fw9_A 15 TVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSK------EELSNTIRCIRK---------GSWTIRLRSGGH 79 (258) T ss_dssp EECCCCTTCHHHHHHHHTCCCGGGCSTTSCCCSEEECCCSH------HHHHHHHHHHHT---------SSCEEEEESSCC T ss_pred CEECCCCCCCHHHHHHHHCCCHHHCCCCCCCCCEEEECCCH------HHHHHHHHHHHH---------CCCEEEEECCCC T ss_conf 53228987336788776502700037888987779970999------999999999998---------797599986996 Q ss_pred -----C--------HHHHHHCCHH------------------HHHHHHHH--CCCEEEE-------------EECCCCC- Q ss_conf -----8--------4442200769------------------99999974--8904885-------------2057775- Q gi|254780791|r 220 -----S--------IEDLWHFNDE------------------MIVRAIAN--SSIPIIS-------------AIGHETD- 252 (529) Q Consensus 220 -----S--------~eDL~~FN~e------------------~laraI~~--~~iPVis-------------gIGHE~D- 252 (529) + +-||..||.- .|.+++.. ..+|+.. +-||-.. T Consensus 80 s~~g~~~~~~~~~ivIdl~~l~~i~~d~~~~~v~V~aGv~~~~l~~~L~~~g~~l~~~~g~~~~~tigG~ia~~~~G~~s 159 (258) T 3fw9_A 80 SYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMS 159 (258) T ss_dssp CTTCTTSCCSSCEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCSSEECCCCSCTTCBHHHHHHTCCCCTTH T ss_pred CCCCCCCCCCCCEEEEECCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCC T ss_conf 78887165899989999877998898479998999658799999999998088046687568853444121454458874 Q ss_pred ---CHHHHHHHCCCCCCCHHH Q ss_conf ---258988641237772145 Q gi|254780791|r 253 ---WTLADYAADLRAPTPTGA 270 (529) Q Consensus 253 ---~Tl~D~VAD~Ra~TPTaA 270 (529) =..+|.|-.++.-||... T Consensus 160 ~~~G~~~d~v~~~~vV~~dG~ 180 (258) T 3fw9_A 160 RKYGLAADNVVDAILIDANGA 180 (258) T ss_dssp HHHCCGGGGEEEEEEECTTCC T ss_pred CEECCHHHEEEEEEEECCCCE T ss_conf 220424223899999826980 No 269 >>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} (A:) Probab=41.99 E-value=18 Score=14.79 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=53.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCC--CCEEEEEEECC--CCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEE Q ss_conf 986229999999999974001--71899999705--43568886279998748947999997352105866814598899 Q gi|254780791|r 12 HPEYSVSELSYHLKHIVESNL--SHVCVRGEISG--YRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFL 87 (529) Q Consensus 12 ~~~~svs~l~~~i~~~l~~~~--~~~~v~gEis~--~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~ 87 (529) ..-||+||+...-...-+..+ ..|.|.|-|-. +.....+.++=|.|.|..+.|..+.- + -++-..++|..|+ T Consensus 6 ~yf~tpse~~~~~~~~~~~~~~g~~vrv~G~V~~GSi~~~~~~~~~~F~ltD~~~~i~V~Y~-G---~~Pd~F~eg~~VV 81 (136) T 1sr3_A 6 DLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYE-G---ILPDLFREGQGVV 81 (136) T ss_dssp SCCBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEE-S---CCCTTCCTTSEEE T ss_pred EEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEECCCCEEEEEEC-C---CCCHHHCCCCCEE T ss_conf 58999799616544322456679679986899872898516631589998056515888864-8---8964442798099 Q ss_pred EEEEEEEECCCCEEEEEEEEE Q ss_conf 999966752884379999971 Q gi|254780791|r 88 VIGKITTFPGSSKYQIIIESL 108 (529) Q Consensus 88 ~~g~~~~y~~~g~~ql~v~~i 108 (529) +.|+. ...|. |.++.| T Consensus 82 v~G~~---~~~g~--F~A~~i 97 (136) T 1sr3_A 82 VQGEL---EKGNH--ILAKEV 97 (136) T ss_dssp EEEEE---CSSSE--EEESSC T ss_pred EEEEE---CCCCE--EEEEEE T ss_conf 99897---89996--999999 No 270 >>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241) Probab=41.96 E-value=18 Score=14.91 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=36.6 Q ss_pred CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 7758999516888444220076999999974890488520577752589886 Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) .||+|+|. -+-.|...++.-....||||+=+--..|.+.+||+ T Consensus 112 ~P~~vii~---------d~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~idyp 154 (196) T 3i1m_B 112 LPDALFVI---------DADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 154 (196) T ss_dssp CCSSEEEE---------ETGGGHHHHHHHHHHTCCEEEECCTTSCGGGCSBC T ss_pred CCCEEEEE---------CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCEE T ss_conf 87547874---------36510899999997599767523677883358878 No 271 >>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A (A:1-200,A:283-322) Probab=41.92 E-value=18 Score=14.78 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=28.0 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 28999847842589999998630597589997 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIF 177 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~ 177 (529) .++-||++|+|+|-..+.+.|.+++|..++.. T Consensus 3 ~kiiii~GPSGsGKstLa~~La~~~~~~ii~~ 34 (240) T 3exa_A 3 EKLVAIVGPTAVGKTKTSVXLAKRLNGEVISG 34 (240) T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEEC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 76799989872169999999999879969962 No 272 >>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} (A:) Probab=41.85 E-value=13 Score=15.97 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.1 Q ss_pred HHHCCHHHHHCCCE-EEEECCCCCEECCHHHCCCCCEEEEE Q ss_conf 87169677731461-99984898895777892999869999 Q gi|254780791|r 449 LQSFAYKNTLKRGY-TSIQDTNNNFITQKRNLATKTRILIN 488 (529) Q Consensus 449 L~slsP~~~L~RGY-aiv~~~~GkiI~s~~~l~~gd~i~i~ 488 (529) |+.++-.=-|..|. --+++.+|+.|++.+++..|+.+-+- T Consensus 46 L~~~t~~l~l~~gaVr~lyt~~G~~v~~l~dl~~g~~yvas 86 (108) T 2dnf_A 46 LQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAV 86 (108) T ss_dssp HHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSCBEEEE T ss_pred HHHHHHHCCCCCCCEEEEECCCCCEECCHHHHCCCCEEEEE T ss_conf 99998641899885789986899890789996779989997 No 273 >>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} (A:) Probab=41.60 E-value=15 Score=15.44 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=63.1 Q ss_pred CCCEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHH--- Q ss_conf 5988999999667528843799999710168-007999999999976540122610016310265289998478425--- Q gi|254780791|r 82 EGIEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGA--- 157 (529) Q Consensus 82 ~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a--- 157 (529) ++...++-|.+++=+.... -.| ..+.....++. +++.++|- -.--||..++..++ T Consensus 11 ~~~~~~I~~iiN~t~~sf~---------~~~~~~d~e~~~~~a-~~~~~~GA-----------diIDig~~st~p~~~~v 69 (282) T 1aj0_A 11 DLSHPHVMGILNVTPDSFS---------DGGTHNSLIDAVKHA-NLMINAGA-----------TIIDVGGESTRPGAAEV 69 (282) T ss_dssp ETTSCEEEEEEECCTTTSC---------CCCCCTHHHHHHHHH-HHHHHHTC-----------SEEEEESSCCSTTCCCC T ss_pred CCCCCCEEEEEECCCCCCC---------CCCCCCCHHHHHHHH-HHHHHCCC-----------CEEEECCCCCCCCCCCC T ss_conf 5999708999808999998---------998677999999999-99998799-----------79987781345666677 Q ss_pred -------HHHHHHHHHHHCC--CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCC Q ss_conf -------8999999863059--7589997210011110367999999997410035767775899951688844422007 Q gi|254780791|r 158 -------VIRDILQRISCRF--PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFN 228 (529) Q Consensus 158 -------~~~D~~~~~~~r~--p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN 228 (529) -+..++..++..+ |+.|.-|..-| +..|++.- .|.| -|.++|+ T Consensus 70 ~~~~E~~rl~~~i~~i~~~~~~piSIDT~~~~v--------~~~al~~G-----------~diI---------Nsi~~~~ 121 (282) T 1aj0_A 70 SVEEELQRVIPVVEAIAQRFEVWISVDTSKPEV--------IRESAKVG-----------AHII---------NDIRSLS 121 (282) T ss_dssp CHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH--------HHHHHHTT-----------CCEE---------EETTTTC T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH--------HHHHHHCC-----------CEEE---------ECHHHHH T ss_conf 688999989999999863355237887247377--------89997359-----------6598---------4234311 Q ss_pred HHHHHHHHHHCCCEEEEE Q ss_conf 699999997489048852 Q gi|254780791|r 229 DEMIVRAIANSSIPIISA 246 (529) Q Consensus 229 ~e~laraI~~~~iPVisg 246 (529) ++++...++....|||.- T Consensus 122 ~~~~~~l~~~~~~~vVlm 139 (282) T 1aj0_A 122 EPGALEAAAETGLPVCLM 139 (282) T ss_dssp STTHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHCCCCEEEEE T ss_conf 146677764369408974 No 274 >>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} (A:26-148,A:211-349) Probab=41.49 E-value=19 Score=14.73 Aligned_cols=25 Identities=4% Similarity=0.039 Sum_probs=11.9 Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHH Q ss_conf 758999516888444220076999999974 Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIAN 238 (529) Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~ 238 (529) .|.+|-.++|= +......+++++-. T Consensus 168 ~D~vim~~~~~-----~~v~gP~~v~~~~g 192 (262) T 3ff6_A 168 GQRVIQVENSH-----IILTGASALNKVLG 192 (262) T ss_dssp HCEEEEETTCB-----EESSCHHHHHHHHS T ss_pred CCEEEEECCCE-----EEEECCCCEEEECC T ss_conf 43378866836-----89637852044348 No 275 >>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A (A:83-462) Probab=41.35 E-value=19 Score=14.71 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=23.7 Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHH--------HCCCEEE-EEECCCCCC--HHHHHHHC Q ss_conf 75899951688844422007699999997--------4890488-520577752--58988641 Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIA--------NSSIPII-SAIGHETDW--TLADYAAD 261 (529) Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~--------~~~iPVi-sgIGHE~D~--Tl~D~VAD 261 (529) -|++|+.-||=..-| ++..++. ..++||| .|-..=.++ .|.+|+.+ T Consensus 166 sdaiIvlPGG~GTLd-------Elfe~ltl~q~g~~~k~~~PiVL~G~~~~~~y~~~l~~~i~~ 222 (380) T 3gh1_A 166 AHGIIIFPGGPGTAE-------ELLYILGIXXHPENADQPXPIVLTGPKQSEAYFRSLDKFITD 222 (380) T ss_dssp CSEEEECSCSHHHHH-------HHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHH T ss_pred CCEEEECCCCCCHHH-------HHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH T ss_conf 788998589765099-------999999998555578898689996786548999999999998 No 276 >>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} (A:) Probab=41.11 E-value=19 Score=14.68 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=50.6 Q ss_pred CCCEEEEEECCCHH-----HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH---HH---HHHHHHHHHCCCCCCCCCCEE Q ss_conf 65289998478425-----89999998630597589997210011110367---99---999999741003576777589 Q gi|254780791|r 144 IPKIIAVITSPTGA-----VIRDILQRISCRFPLRVIIFPVKVQGDECPKE---IA---NAILQLNTLKEGRTCPRPDII 212 (529) Q Consensus 144 ~p~~i~vits~~~a-----~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~---i~---~ai~~~~~~~~~~~~~~~D~i 212 (529) +||||+|+.-++-. +..|+++.... + ...+.++..+++.-..+ .+ ..+..++. ..+|++ T Consensus 1 M~kkI~ill~~gf~~~e~~~~~~vl~~ag~--~-~~~~~~~~~~~~~v~s~~G~~i~~d~~~~~~~~-------~~~d~l 70 (205) T 2ab0_A 1 MSASALVCLAPGSEETEAVTTIDLLVRGGI--K-VTTASVASDGNLAITCSRGVKLLADAPLVEVAD-------GEYDVI 70 (205) T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHHHTTC--E-EEEEECSSTTCCEEECTTSCEEECSEEHHHHTT-------SCCSEE T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCC--E-EEEEEECCCCCCEEEECCCCEEECCCCHHHCCC-------CCCEEE T ss_conf 983499995499109999999999998899--8-999997189984688079988957867788283-------454199 Q ss_pred EEECCCCCHHHHHHCCHH-HHHHHHHHCCCEEEEE Q ss_conf 995168884442200769-9999997489048852 Q gi|254780791|r 213 ILARGGGSIEDLWHFNDE-MIVRAIANSSIPIISA 246 (529) Q Consensus 213 ii~RGGGS~eDL~~FN~e-~laraI~~~~iPVisg 246 (529) ++.-|-|..++|+..-+. .++|+.++..-||+.- T Consensus 71 ~~~gg~~~~~~~~~~~~~~~~i~~~~~~~k~v~~i 105 (205) T 2ab0_A 71 VLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAI 105 (205) T ss_dssp EECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEE T ss_pred EECCCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 98455551554203689999999875123135531 No 277 >>1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} (A:) Probab=41.02 E-value=19 Score=14.67 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=36.8 Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH Q ss_conf 99999986305975899972100111103679999999974100357677758999516888444220076999999974 Q gi|254780791|r 159 IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN 238 (529) Q Consensus 159 ~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~ 238 (529) +...++.+..+.+.-+.--...+||..-...++.++..+. ||++.+ -=+-||...+.+.+.. T Consensus 18 ~~~~i~~~~~~~d~l~v~~GD~~~g~~~~~~~~~~l~~~g----------~d~~~~--------GNHe~d~g~l~~~l~~ 79 (255) T 1t70_A 18 LQNHLPTIRPQFDFVIVNMENSAGGFGMHRDAARGALEAG----------AGCLTL--------GNHAWHHKDIYPMLSE 79 (255) T ss_dssp HHHHHHHHGGGCSEEEEECTBTTTTSSCCHHHHHHHHHHT----------CSEEEC--------CTTTTSSTTHHHHHHT T ss_pred HHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCC----------CCEEEC--------CCHHHHCHHHHHHHHH T ss_conf 9987088786098999998667888589999999999757----------867973--------6055424236899863 Q ss_pred CCCEEEEEECCCCCC Q ss_conf 890488520577752 Q gi|254780791|r 239 SSIPIISAIGHETDW 253 (529) Q Consensus 239 ~~iPVisgIGHE~D~ 253 (529) +.-|++++.|=..+. T Consensus 80 ~~~~~l~~n~~~~~~ 94 (255) T 1t70_A 80 DTYPIVRPLNYADPG 94 (255) T ss_dssp TCSCEECCSCCCCTT T ss_pred CCCCCCCHHCCCCCC T ss_conf 031236321077778 No 278 >>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:1-106,A:243-276) Probab=40.60 E-value=19 Score=14.62 Aligned_cols=89 Identities=11% Similarity=0.116 Sum_probs=50.8 Q ss_pred EEEEEECCCHHH-HHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 899984784258-9999998630---597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 147 IIAVITSPTGAV-IRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 147 ~i~vits~~~a~-~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) |||||.+..... +..+++-+.. .+++++.++ .+.+++....-..+|+.+-... ..|+||++-.... T Consensus 2 rIgvIvp~~~npf~~~i~~Gie~~a~~~Gy~vii~--~~~~~~d~~~q~~~i~~li~~~------~~dgIIl~~~~~~-- 71 (140) T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHR--STKDDGDIAGQIQILSYHLSQA------PPDALILAPNSAE-- 71 (140) T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEEC--CCSSTTCHHHHHHHHHHHHHHS------CCSEEEECCSSTT-- T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE--ECCCCCCHHHHHHHHHHHHHCC------CCCEEEEECCCHH-- T ss_conf 89999599999999999999999999839989999--5899879999999999999708------9989999379857-- Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 42200769999999748904885205777 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGHET 251 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGHE~ 251 (529) ......+.+.+..||||. |+... T Consensus 72 -----~~~~~l~~l~~~gIPvV~-id~~i 94 (140) T 3ksm_A 72 -----DLTPSVAQYRARNIPVLV-VDSDL 94 (140) T ss_dssp -----TTHHHHHHHHHTTCCEEE-ESSCC T ss_pred -----HHHHHHHHHHHCCCCEEE-CCCCC T ss_conf -----779999999977994997-36644 No 279 >>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (i:) Probab=40.34 E-value=16 Score=15.42 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=18.3 Q ss_pred CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH Q ss_conf 677758999516888444220076999999974 Q gi|254780791|r 206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN 238 (529) Q Consensus 206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~ 238 (529) ...||+.|-++|||-.. -+.==--.+|||+.. T Consensus 63 ~~~~Dv~v~v~GGG~~g-Qa~Air~aiaraL~~ 94 (146) T 2zkq_i 63 FAGVDIRVRVKGGGHVA-QIYAIRQSISKALVA 94 (146) T ss_dssp TSSEEEEEEEESSCHHH-HHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEECCCCEE-HHHHHHHHHHHHHHH T ss_conf 35632589973388130-032649999999998 No 280 >>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} (A:) Probab=40.29 E-value=19 Score=14.59 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=23.1 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHC-CCEEEEE Q ss_conf 289998478425899999986305-9758999 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCR-FPLRVII 176 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r-~p~~~~~ 176 (529) -||+++.|..++.+.+++..+... .++++.. T Consensus 1 ~rI~~~gs~~~s~l~~ll~~~~~~~~~~~i~~ 32 (209) T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDI 32 (209) T ss_dssp CEEEEEESSSCTTHHHHHHHHHSTTCSCEEEE T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCCEEEE T ss_conf 98999982784659999999766999978999 No 281 >>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:) Probab=40.22 E-value=19 Score=14.58 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=53.8 Q ss_pred CCCCEEEEEECC---CHHHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 265289998478---4258999999863059758999721-----00111103679999999974100357677758999 Q gi|254780791|r 143 FIPKIIAVITSP---TGAVIRDILQRISCRFPLRVIIFPV-----KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529) Q Consensus 143 ~~p~~i~vits~---~~a~~~D~~~~~~~r~p~~~~~~p~-----~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529) .-|++|+||-.. +..++. +++.+. .+++++.+++. .+.|..+-.++.++ ...+|+++| T Consensus 11 ~~p~siaViGaS~~~~~~g~~-v~~~L~-~~g~~~~~~~p~~~~~~i~g~~~~~sl~~~------------~~~~D~vvi 76 (140) T 1iuk_A 11 SQAKTIAVLGAHKDPSRPAHY-VPRYLR-EQGYRVLPVNPRFQGEELFGEEAVASLLDL------------KEPVDILDV 76 (140) T ss_dssp HHCCEEEEETCCSSTTSHHHH-HHHHHH-HTTCEEEEECGGGTTSEETTEECBSSGGGC------------CSCCSEEEE T ss_pred HCCCEEEEEEECCCCCCCHHH-HHHHHH-HCCCEEEEECCCCCCCEECCEEEECCHHHC------------CCCCCEEEE T ss_conf 679959999226999971999-999997-289838997876764255682752556775------------899728999 Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH Q ss_conf 5168884442200769999999748904885205777525898864 Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA 260 (529) Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529) +.--=...|. .+...+..++.+--+-|--+..+.+... T Consensus 77 ~vp~~~~~~~--------l~e~~~~g~~~~~~~~g~~~e~~~~~~~ 114 (140) T 1iuk_A 77 FRPPSALMDH--------LPEVLALRPGLVWLQSGIRHPEFEKALK 114 (140) T ss_dssp CSCHHHHTTT--------HHHHHHHCCSCEEECTTCCCHHHHHHHH T ss_pred EECHHHHHHH--------HHHHHHCCCCEEEECCCCCCHHHHHHHH T ss_conf 8088998999--------9999964989899898977999999999 No 282 >>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} (A:1-80) Probab=40.02 E-value=19 Score=14.55 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=34.9 Q ss_pred CEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEECC Q ss_conf 619998489889577789299986999991109999995057 Q gi|254780791|r 461 GYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKA 502 (529) Q Consensus 461 GYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~k~ 502 (529) |=.++.+.+|.++++..-+...+.+.+.|..-+..++|...- T Consensus 21 GSGfii~~~G~IlTn~HVV~~~~~i~V~~~g~~~~A~vv~~~ 62 (80) T 2w5e_A 21 GKGTGFFSGNDIVTAAHVVGNNTFVNVCYEGLMYEAKVRYMP 62 (80) T ss_dssp EEEEEEEETTEEEEEHHHHTTCSEEEEEETTEEEEEEEEECC T ss_pred CCEEEEEECCEEEECCHHHCCCCEEEEEEEEEEECCCCCCCC T ss_conf 629999989999988157088837888620011022110376 No 283 >>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A (A:193-356) Probab=39.93 E-value=19 Score=14.54 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=23.7 Q ss_pred HHHHHHHHHCCCEEE-EEECCCCCCHHHHHHHCCCCCCCHHHH Q ss_conf 999999974890488-520577752589886412377721456 Q gi|254780791|r 230 EMIVRAIANSSIPII-SAIGHETDWTLADYAADLRAPTPTGAA 271 (529) Q Consensus 230 e~laraI~~~~iPVi-sgIGHE~D~Tl~D~VAD~Ra~TPTaAA 271 (529) ...+-.-..|.+||| |..|..++...-+..--+-..+|.+-| T Consensus 99 ~~~~lEa~~~g~pvi~~~~~~~~~~i~~~~~~~~~~~d~~~~~ 141 (164) T 3beo_A 99 GGVQEEAPSLGVPVLVLRDTTERPEGIEAGTLKLAGTDEETIF 141 (164) T ss_dssp HHHHHHHHHHTCCEEECSSCCSCHHHHHTTSEEECCSCHHHHH T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHCCEEEECCCCHHHHH T ss_conf 0366777761998898078775873674481698689999999 No 284 >>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* (A:) Probab=39.41 E-value=20 Score=14.48 Aligned_cols=91 Identities=20% Similarity=0.118 Sum_probs=57.2 Q ss_pred CCCCEEEEEECCCHHHHHHHH-----HHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE-- Q ss_conf 265289998478425899999-----98630597--589997210011110367999999997410035767775899-- Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDIL-----QRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII-- 213 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~-----~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii-- 213 (529) .-+.|||||.|.=-.-+-|-+ ..+...-. +.++-.|-.. ||--+++++.+ +||.|| T Consensus 15 ~~~~ri~IV~s~fn~~i~~~Ll~ga~~~l~~~g~~~i~v~~VPGa~-------EiP~a~~~l~~--------~~DaiIaL 79 (160) T 2c92_A 15 ASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAI-------EIPVVAQELAR--------NHDAVVAL 79 (160) T ss_dssp CTTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGG-------GHHHHHHHHHT--------SCSEEEEE T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH-------HHHHHHHHHHH--------HCCCEEEE T ss_conf 8899899997307699999999999999997799722344147488-------99999999874--------14561578 Q ss_pred --EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEEC Q ss_conf --95168884442200-769999999748904885205 Q gi|254780791|r 214 --LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIG 248 (529) Q Consensus 214 --i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIG 248 (529) |+||+=.--|..|= =...|.+.=....+||+.||= T Consensus 80 G~VIrG~T~H~~~i~~~vs~gl~~v~l~~~vPV~~Gvl 117 (160) T 2c92_A 80 GVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVL 117 (160) T ss_dssp EEEECCSSTHHHHHHHHHHHHHHHHHHHHTCCEEEEEE T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 89982785288899999999999987544997599970 No 285 >>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structural genomics consortium (NESG); NMR {Escherichia coli K12} (A:) Probab=39.33 E-value=20 Score=14.47 Aligned_cols=80 Identities=11% Similarity=0.094 Sum_probs=37.2 Q ss_pred CCCEEEEEEECCCCEEE--EEEECCCCCCC-------CCCCCCCCEEEEEEEEEEEC-CCCEEEEEEEE---------EE Q ss_conf 88627999874894799--99973521058-------66814598899999966752-88437999997---------10 Q gi|254780791|r 49 SSGHAYFSLKDNHSRID--AIIWKGTLNKI-------EFLPEEGIEFLVIGKITTFP-GSSKYQIIIES---------LI 109 (529) Q Consensus 49 ~sGH~Yf~lkd~~a~i~--~~~~~~~~~~~-------~~~~~~G~~v~~~g~~~~y~-~~g~~ql~v~~---------i~ 109 (529) ..|.|||.|++.+..+= -.+|.+...-. ..-|..+.- .+|. ..|+|.|...+ =. T Consensus 27 ~~g~~rfrL~a~ng~iia~S~~Y~s~~~a~~~I~~v~~~a~~A~if-------El~~d~~g~~~f~L~~~ng~vIa~Se~ 99 (130) T 2k8e_A 27 SDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERY-------EKKTASNGKFYFNLKAANHQIIGSSQM 99 (130) T ss_dssp TTCCEEEEEECTTSCEEEECCCBSSHHHHHHHHHHHHHSSSCTTTE-------EEEEETTTEEEEEEECTTSCEEEECCC T ss_pred CCCCEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-------EEEECCCCCEEEEEEECCCCEEEECCC T ss_conf 8997999999299999986799688899999999998755566407-------888547997799999799858887788 Q ss_pred ECCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 16800799999999997654012261 Q gi|254780791|r 110 PSGSGTLLTALEKRKKKLLEEGLFSD 135 (529) Q Consensus 110 ~~g~G~l~~~~e~lk~~L~~eGlfd~ 135 (529) +....++...++.+|+--.....+|. T Consensus 100 y~s~~~a~~~i~~vk~~a~~a~v~d~ 125 (130) T 2k8e_A 100 YATAQSRETGIASVKANGTSQTVKDN 125 (130) T ss_dssp BSSHHHHHHHHHHHHHHTTCCCEEEC T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEC T ss_conf 69999999999999974899925851 No 286 >>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} (A:44-272) Probab=39.03 E-value=20 Score=14.44 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=59.8 Q ss_pred EEEEEEECCCC----CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHCCHHHHHHHHHHCCCE Q ss_conf 58999721001----111036799999999741003576777589995168884-----442200769999999748904 Q gi|254780791|r 172 LRVIIFPVKVQ----GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHFNDEMIVRAIANSSIP 242 (529) Q Consensus 172 ~~~~~~p~~vQ----G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~FN~e~laraI~~~~iP 242 (529) +-++.....|. |..+..-++++++.+++.+ .-+|.++-+||.. +-+..+=.-.-+-+-+...+| T Consensus 54 v~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~-------~Piv~l~ds~G~r~~e~~~~~~~~~~~~~~~~~~~~~vP 126 (229) T 1on3_A 54 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-------TPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVP 126 (229) T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-------CCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSC T ss_pred EEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999974866150779787524279999998559-------988999826997655440133320389999998507897 Q ss_pred EEEEECCCCCC--HHHHHHHCCCCCCCHHHHHHHCC Q ss_conf 88520577752--58988641237772145676332 Q gi|254780791|r 243 IISAIGHETDW--TLADYAADLRAPTPTGAAEMAVP 276 (529) Q Consensus 243 VisgIGHE~D~--Tl~D~VAD~Ra~TPTaAAElavp 276 (529) +|+.|-+..=- .++=-.+|....+|.+.-=++-| T Consensus 127 ~i~vv~g~~~ggga~~~~~~D~~i~~~~a~~~~~gP 162 (229) T 1on3_A 127 QIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP 162 (229) T ss_dssp EEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH T ss_pred EEEEEECCCCCCCEEECCCCCEEEEECCEEEEEECC T ss_conf 799970788765043314482899815604994082 No 287 >>3bic_A Methylmalonyl-COA mutase, mitochondrial precursor; organic aciduria, methylmalonyl COA mutase deficiency, metabolic disease, structural genomics; 2.60A {Homo sapiens} (A:584-762) Probab=38.91 E-value=20 Score=14.42 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=64.6 Q ss_pred CEEEEEEC--CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHH Q ss_conf 28999847--842589999998630597589997210011110367999999997410035767775899951-688844 Q gi|254780791|r 146 KIIAVITS--PTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIE 222 (529) Q Consensus 146 ~~i~vits--~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~e 222 (529) .+|-+++. ..-..-..++..+-++.+++++...+.+=| .+++.++..- .+|+|++.- =++..+ T Consensus 22 ~~vll~~~~~d~H~~g~~~~~~~l~~~G~~v~~lg~~~~~----~~~~~~~~~~----------~~d~V~ls~~~~~~~~ 87 (179) T 3bic_A 22 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTP----REVAQQAVDA----------DVHAVGVSTLAAGHKT 87 (179) T ss_dssp CEEEEEEBSSCCCCHHHHHHHHHHHHTTCEEEECCTTBCH----HHHHHHHHHH----------TCSEEEEEECSSHHHH T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCH----HHHHHHHHHC----------CCCEEEEECCCCCHHH T ss_conf 7699965787745102999999998578007508877899----9999999975----------9899999368734798 Q ss_pred HHHHCCHHHHHHHHHH---CCCEEE-EEECCCCCCHHH-HHHHCCCCCCCHHHHHHHC Q ss_conf 4220076999999974---890488-520577752589-8864123777214567633 Q gi|254780791|r 223 DLWHFNDEMIVRAIAN---SSIPII-SAIGHETDWTLA-DYAADLRAPTPTGAAEMAV 275 (529) Q Consensus 223 DL~~FN~e~laraI~~---~~iPVi-sgIGHE~D~Tl~-D~VAD~Ra~TPTaAAElav 275 (529) +-..+++.+-+ -.+||| +|-+-+.|...+ ..=+|-=+..|+.+.|.+. T Consensus 88 -----~~~~~~~~lr~~g~~~~~vivgG~~~~~~~~~~~~~Gad~~~~~~~~~~e~l~ 140 (179) T 3bic_A 88 -----LVPELIKELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAV 140 (179) T ss_dssp -----HHHHHHHHHHHHTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHH T ss_pred -----HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHH T ss_conf -----99999999996799886799807688788999997797678199980999999 No 288 >>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} (A:1-58,A:158-335) Probab=38.80 E-value=14 Score=15.81 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=34.6 Q ss_pred HHHHCCCEEEEEEEC---------CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH Q ss_conf 863059758999721---------00111103679999999974100357677758999516888444220076999999 Q gi|254780791|r 165 RISCRFPLRVIIFPV---------KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529) Q Consensus 165 ~~~~r~p~~~~~~p~---------~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529) .|++|+..+|+|=.= .+.|.+.. |++-+..+ +.+|+|++.=|||+.- -.+++. T Consensus 39 ~ls~~~~~~v~lkredlq~vd~p~viaGq~Ti-----a~EI~~Ql------~~pD~vv~pvGgGGl~-------aGi~~~ 100 (236) T 1tdj_A 39 KLSSRLDNVILVKREDRQPVDHPMVIAGQGTL-----ALELLQQD------AHLDRVFVPVGGGGLA-------AGVAVL 100 (236) T ss_dssp HHHHHTTSEEEEECGGGSTTCCHHHHHHHHHH-----HHHHHHHC------TTCCEEEEECSSSHHH-------HHHHHH T ss_pred HHHHHHCCEEEEEECCCCCCCCHHHHCCCCHH-----HHHHHHHC------CCCCEEEEECCHHHHH-------HHHHHH T ss_conf 86698699899997788988571552424036-----77899875------8989899972750899-------999999 Q ss_pred HH-HCCCEEEEEE Q ss_conf 97-4890488520 Q gi|254780791|r 236 IA-NSSIPIISAI 247 (529) Q Consensus 236 I~-~~~iPVisgI 247 (529) +. ..|-+-|.|| T Consensus 101 ~k~~~p~~kiigV 113 (236) T 1tdj_A 101 IKQLMPQIKVIAV 113 (236) T ss_dssp HHHHCTTCEEEEE T ss_pred HHHHCCCCCEEEE T ss_conf 9874997605655 No 289 >>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (B:) Probab=38.39 E-value=20 Score=14.36 Aligned_cols=66 Identities=24% Similarity=0.362 Sum_probs=47.0 Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH Q ss_conf 77758999516888444220076999999974890488520577752589886412377721456763323467776699 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLI 286 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~ 286 (529) ..||+|||. .+=+|...++....+.||||+=+--.+|.+.+||. +|...+-...+. T Consensus 157 ~~Pd~iii~---------d~~~~~~ai~Ea~~l~IPvi~lvDTn~~p~~idyp---------------IP~Ndds~~si~ 212 (256) T 2vqe_B 157 RLPDAIFVV---------DPTKEAIAVREARKLFIPVIALADTDSDPDLVDYI---------------IPGNDDAIRSIQ 212 (256) T ss_dssp SCCSEEEES---------CTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEE---------------CCSCSSCHHHHH T ss_pred HCCCEEEEE---------CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEE---------------EECCCCHHHHHH T ss_conf 046469970---------67731899998885285189972135877656634---------------325885087999 Q ss_pred HHHHHHHHHH Q ss_conf 9998887789 Q gi|254780791|r 287 NLEARLNNII 296 (529) Q Consensus 287 ~l~~RL~~a~ 296 (529) -+..-+..++ T Consensus 213 li~~ll~~ai 222 (256) T 2vqe_B 213 LILSRAVDLI 222 (256) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999999 No 290 >>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genomics; 1.85A {Pyrococcus horikoshii OT3} (A:1-69,A:202-263) Probab=38.37 E-value=20 Score=14.36 Aligned_cols=72 Identities=18% Similarity=0.109 Sum_probs=52.0 Q ss_pred CEEEEEECCCHHHHHHHHHHHHH-CCC--E-EEEEEE--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 28999847842589999998630-597--5-899972--10011110367999999997410035767775899951688 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC-RFP--L-RVIIFP--VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~-r~p--~-~~~~~p--~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) .+++|||-.++-..+++...+++ .++ + .++..| +.|=|++....|..|... .+..|.+.+|+. T Consensus 34 ~~~~ivTN~~~~~~~~~~~~L~~lg~~~~~~~i~~sp~~~~~VGD~~~~Di~~A~~a-----------G~~ti~v~~g~~ 102 (131) T 1zjj_A 34 IPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGEELWMVGDRLDTDIAFAKKF-----------GMKAIMVLTGVS 102 (131) T ss_dssp CCEEEEESCCSSCHHHHHHHHHTTTCCCCGGGEEEHTCEEEEEESCTTTHHHHHHHT-----------TCEEEEESSSSC T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECHCCEEEEECCCHHHHHHHHHHC-----------CCCEEEECCCCC T ss_conf 968999489999999999999976998881547511430799768817789999987-----------996999888999 Q ss_pred CHHHHHHCC Q ss_conf 844422007 Q gi|254780791|r 220 SIEDLWHFN 228 (529) Q Consensus 220 S~eDL~~FN 228 (529) +.+++...+ T Consensus 103 ~~~~~~~~~ 111 (131) T 1zjj_A 103 SLEDIKKSE 111 (131) T ss_dssp CHHHHTTCS T ss_pred CHHHHHHCC T ss_conf 867885058 No 291 >>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:198-366) Probab=37.75 E-value=21 Score=14.28 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=50.7 Q ss_pred EEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH--------------HHHCCHHHHHHHHHH Q ss_conf 99972100-111103679999999974100357677758999516888444--------------220076999999974 Q gi|254780791|r 174 VIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED--------------LWHFNDEMIVRAIAN 238 (529) Q Consensus 174 ~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD--------------L~~FN~e~laraI~~ 238 (529) +++|-... .-..-...+++|+..+.... +++-+++-|+|..++ +..++.+++..-++. T Consensus 13 ~i~~~g~l~~~~Kg~~~li~a~~~l~~~~-------~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 85 (169) T 2gek_A 13 TVLFLGRYDEPRKGMAVLLAALPKLVARF-------PDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRS 85 (169) T ss_dssp EEEEESCTTSGGGCHHHHHHHHHHHHTTS-------TTCEEEEESCSCHHHHHHHTGGGGGGEEECCSCCHHHHHHHHHH T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCHHHHHCCC T ss_conf 48999602466420267899877665208-------86210222232220012331255653899740233101110123 Q ss_pred CCCEEEEEECCC-CCCHHHHHHHCCCCC Q ss_conf 890488520577-752589886412377 Q gi|254780791|r 239 SSIPIISAIGHE-TDWTLADYAADLRAP 265 (529) Q Consensus 239 ~~iPVisgIGHE-~D~Tl~D~VAD~Ra~ 265 (529) |.+-++..--+| .-.++.+..|-=... T Consensus 86 ~~~~~~~~~~~e~~~~~~lEama~G~pv 113 (169) T 2gek_A 86 ADVYCAPHLGGESFGIVLVEAMAAGTAV 113 (169) T ss_dssp SSEEEECCCSCCSSCHHHHHHHHHTCEE T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEE T ss_conf 3222222234356754002211368419 No 292 >>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus} (B:1-124,B:272-291) Probab=37.63 E-value=21 Score=14.27 Aligned_cols=90 Identities=8% Similarity=0.014 Sum_probs=50.7 Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 16310265289998478425899999986305975899972---100111103679999999974100357677758999 Q gi|254780791|r 138 KNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP---VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529) Q Consensus 138 k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p---~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529) +.|-+.--+.+|.+=-++|-==+==--+...+-+..++.++ +.+...+...+.+. .+..+. +|+||+ T Consensus 27 ~~~~~l~gk~va~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsi~Dta~---vLs~~~-------~D~ivi 96 (144) T 3d6n_B 27 EGKEETIKASAVLFFSEPSTRTRLSFEKAARELGIETYLVSGSESSTVKGESFFDTLK---TFEGLG-------FDYVVF 96 (144) T ss_dssp TTCCCCCCCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHH---HHHHTT-------CSEEEE T ss_pred HCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH---HHHCCC-------CEEEEE T ss_conf 2520036874999980897445999999999859988867710112667874889998---740256-------528998 Q ss_pred ECC-CCCHHHHHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 516-888444220076999999974890488520 Q gi|254780791|r 215 ARG-GGSIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 215 ~RG-GGS~eDL~~FN~e~laraI~~~~iPVisgI 247 (529) -++ +|.... .....+.+|||-|= T Consensus 97 R~~~~~~~l~----------~~a~~s~vPVINa~ 120 (144) T 3d6n_B 97 RVPFVFFPYK----------EIVKSLNLRLVNAG 120 (144) T ss_dssp EESSCCCSCH----------HHHHTCSSEEEEEE T ss_pred CCCCCHHHHH----------HHHHCCCCCEEECC T ss_conf 2453105799----------99731897789898 No 293 >>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} (A:) Probab=37.59 E-value=21 Score=14.26 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=47.5 Q ss_pred CEEEEEECCCHHHHHHHHHHH-HHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 289998478425899999986-305-975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRI-SCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~-~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) ++|-||-. -.....++..+ ... +.+++..+.. =.+|+..+....+......||+||+ --+ T Consensus 3 ~~ILiVdd--d~~~~~~l~~~L~~~g~~~~v~~a~~----------g~eal~~l~~~~~~~~~~~pdliil------D~~ 64 (140) T 1k68_A 3 KKIFLVED--NKADIRLIQEALANSTVPHEVVTVRD----------GMEAMAYLRQEGEYANASRPDLILL------XLN 64 (140) T ss_dssp CEEEEECC--CHHHHHHHHHHHHTCSSCCEEEEECS----------HHHHHHHHTTCGGGGSCCCCSEEEE------CSS T ss_pred CCEEEEEC--CHHHHHHHHHHHHHCCCCCEEEEECC----------HHHHHHHHHHHHHHHCCCCCCEEEE------ECC T ss_conf 82999979--99999999999996799818999899----------9999999986155540579988999------888 Q ss_pred HHHCCHHHHHHHHHHC----CCEEE--EEECCCCCC Q ss_conf 2200769999999748----90488--520577752 Q gi|254780791|r 224 LWHFNDEMIVRAIANS----SIPII--SAIGHETDW 253 (529) Q Consensus 224 L~~FN~e~laraI~~~----~iPVi--sgIGHE~D~ 253 (529) |=..|-.++++.|-+. .+||| |+-+-+.+. T Consensus 65 mP~~dG~el~~~ir~~~~~~~~pvI~lS~~~~~~~~ 100 (140) T 1k68_A 65 LPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDI 100 (140) T ss_dssp CSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHH T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH T ss_conf 999964899999984876689978999578999999 No 294 >>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} (A:) Probab=37.55 E-value=21 Score=14.26 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=52.4 Q ss_pred CCCEEEEEEC----CCHHHHHHHHHHHH--HCCCEEEEEEEC-----------CCCCCCHHHHHHHHHHH--HH---HHC Q ss_conf 6528999847----84258999999863--059758999721-----------00111103679999999--97---410 Q gi|254780791|r 144 IPKIIAVITS----PTGAVIRDILQRIS--CRFPLRVIIFPV-----------KVQGDECPKEIANAILQ--LN---TLK 201 (529) Q Consensus 144 ~p~~i~vits----~~~a~~~D~~~~~~--~r~p~~~~~~p~-----------~vQG~~a~~~i~~ai~~--~~---~~~ 201 (529) -+|||+||.+ .+|.-..|+...+. .+.++++.+... ..+-......++..... +. ... T Consensus 5 ~~kki~ill~~~~~~dG~~~~e~~~p~~~l~~ag~~v~~~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~ 84 (232) T 1vhq_A 5 TXKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAXTETRNVLIEAARITRGEIRPLA 84 (232) T ss_dssp -CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGG T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCEEEEEHHHHHCCCCCHH T ss_conf 64669999658988775319899999999998899899994699846406258886236655446531010202567767 Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHC---------CHH--HHHHHHHHCCCEEEE Q ss_conf 03576777589995168884442200---------769--999999748904885 Q gi|254780791|r 202 EGRTCPRPDIIILARGGGSIEDLWHF---------NDE--MIVRAIANSSIPIIS 245 (529) Q Consensus 202 ~~~~~~~~D~iii~RGGGS~eDL~~F---------N~e--~laraI~~~~iPVis 245 (529) + -....||+|++.-|.|+..|+--+ |.+ .+.+..++...||.+ T Consensus 85 ~-~~~~d~d~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 138 (232) T 1vhq_A 85 Q-ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAXHQAGKPLGF 138 (232) T ss_dssp G-CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEE T ss_pred H-CCHHHCCEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEE T ss_conf 8-79645878996698542888765330352022289999999999986996999 No 295 >>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:) Probab=37.53 E-value=21 Score=14.25 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=25.1 Q ss_pred CCCEEEEECCCCCE-E------CCHHHCCCCCEEEEEEECEEEEEEEEECCCC Q ss_conf 14619998489889-5------7778929998699999110999999505788 Q gi|254780791|r 459 KRGYTSIQDTNNNF-I------TQKRNLATKTRILINFFDGQANAIVINKAPP 504 (529) Q Consensus 459 ~RGYaiv~~~~Gki-I------~s~~~l~~gd~i~i~l~DG~v~a~V~~k~~~ 504 (529) +|||-.|...+|.- + .....+.+|+.++-.+..|.-.-+..+..+. T Consensus 13 ~kGfGFI~~~~g~~~~f~~~~~~g~~~l~~G~~V~f~~~~~~kG~~A~~V~~~ 65 (74) T 2k5n_A 13 DKGFGFIKDENGDNRYFHVIKVANPDLIKKDAAVTFEPTTNNKGLSAYAVKVV 65 (74) T ss_dssp TTTEEEEEESSSCEEEEEGGGBSSGGGCCTTCEEEEEEEECSSSEEEEEEEEC T ss_pred CCCEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEEEE T ss_conf 99858984279981999966007987138999999999979998778899996 No 296 >>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} (A:) Probab=37.44 E-value=21 Score=14.24 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=27.8 Q ss_pred CCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH-----HHCCCEEEEEECCCCC Q ss_conf 76777589995168884442200769999999-----7489048852057775 Q gi|254780791|r 205 TCPRPDIIILARGGGSIEDLWHFNDEMIVRAI-----ANSSIPIISAIGHETD 252 (529) Q Consensus 205 ~~~~~D~iii~RGGGS~eDL~~FN~e~laraI-----~~~~iPVisgIGHE~D 252 (529) ...+.|++++-|||-... |+.+.|.-+. ..++.|||.=..|-+. T Consensus 223 s~GN~~~~l~~RG~~~~n----y~~~~vd~~~~~~~k~~~~~pvivD~SH~~~ 271 (350) T 1n8f_A 223 TSGNGDCHIILRGGKEPN----YSAKHVAEVKEGLNKAGLPAQVMIDFSHANS 271 (350) T ss_dssp ECCCSCEEEEECCSSSCC----CSHHHHHHHHHHHHHTTCCCCEEEECSGGGT T ss_pred CCCCCCCEEEEECCCCCC----CCHHHHHHHHHHHHHCCCCHHHHHHCCCCCC T ss_conf 689987348986588899----8999999999999887998788651037764 No 297 >>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A (A:) Probab=37.39 E-value=21 Score=14.24 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=56.9 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) .+||-||- +.+..++++..+-+.|++++..+...- +|+..+.. ..||+||+ =-.| T Consensus 2 ~~rILiVd--D~~~~~~~l~~~L~~~g~~v~~a~~~~----------~al~~~~~-------~~~dlii~------D~~l 56 (127) T 2jba_A 2 ARRILVVE--DEAPIREMVCFVLEQNGFQPVEAEDYD----------SAVNQLNE-------PWPDLILL------AWML 56 (127) T ss_dssp CCEEEEEC--SCHHHHHHHHHHHHHTTCEEEEECSHH----------HHHTTCSS-------SCCSEEEE------ESEE T ss_pred CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEECCHH----------HHHHHHHH-------CCCCEEEE------ECCC T ss_conf 99899997--999999999999998799999971317----------89999985-------34625886------3278 Q ss_pred HHCCHHHHHHHHHH----CCCEEEEEECCCCCCHH Q ss_conf 20076999999974----89048852057775258 Q gi|254780791|r 225 WHFNDEMIVRAIAN----SSIPIISAIGHETDWTL 255 (529) Q Consensus 225 ~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl 255 (529) =..|-.++++.|-. ..+|||.-.+++...+. T Consensus 57 P~~~G~~l~~~lr~~~~~~~~piI~ls~~~~~~~~ 91 (127) T 2jba_A 57 PGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDR 91 (127) T ss_dssp TTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH T ss_conf 99989999999983787899929999898999999 No 298 >>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350) Probab=37.26 E-value=21 Score=14.22 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=53.8 Q ss_pred CEEEEEE-CCCH-H---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 2899984-7842-5---899999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 146 KIIAVIT-SPTG-A---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 146 ~~i~vit-s~~~-a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) .+|++|. +..+ . .+...+....+..++++.+..+ ++-+....+.++.+-... .++|+||+.-...+ T Consensus 4 ~~I~~i~p~~~~n~F~~~v~~gie~aA~~~G~~l~v~~s----~~d~~~q~~~ie~lia~~-----~~vD~Iii~p~~~~ 74 (208) T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFXQAAARDLGLDLRILYA----ERDPQNTLQQARELFQGR-----DKPDYLXLVNEQYV 74 (208) T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHSS-----SCCSEEEEECCSSH T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHCC-----CCEEEEEECCCCCC T ss_conf 799998699888989999999999999973998999948----999999999999998479-----98699997784203 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEE---EECC-CCCCHHHHHH Q ss_conf 4442200769999999748904885---2057-7752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIIS---AIGH-ETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVis---gIGH-E~D~Tl~D~V 259 (529) . ..+.+......||||+ .+.. .+++.-.|-. T Consensus 75 ~--------~~~i~~a~~~gIPVV~ids~l~~~~~~~Vg~Dn~ 109 (208) T 3h75_A 75 A--------PQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQ 109 (208) T ss_dssp H--------HHHHHHHTTSCCEEEEEESCCCTTTC-------- T ss_pred C--------HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC T ss_conf 6--------9999999977994999266556531000013543 No 299 >>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} (A:89-256) Probab=37.19 E-value=21 Score=14.21 Aligned_cols=92 Identities=5% Similarity=-0.041 Sum_probs=57.9 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) |.+..+++++.-.+....+.....++.+++...|..=.+.--+.++-+++. +++.++++.-..+-.- T Consensus 29 ~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ai~-----------~~~~~v~i~~~~~~tg-- 95 (168) T 1t3i_A 29 AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLS-----------EKTKLVTVVHISNTLG-- 95 (168) T ss_dssp TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCC-----------TTEEEEEEESBCTTTC-- T ss_pred CCCEEEECCCCCCCEEEHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC-----------CCCEEEEEECCCCCCC-- T ss_conf 998677103555010110433220268257753121223104988744027-----------8956999971245654-- Q ss_pred HHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 2007699999997489048852057 Q gi|254780791|r 225 WHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 225 ~~FN~e~laraI~~~~iPVisgIGH 249 (529) ...+=+++++..-+..+++|.=-=| T Consensus 96 ~~~~i~~i~~~~~~~~~~~i~D~~~ 120 (168) T 1t3i_A 96 CVNPAEEIAQLAHQAGAKVLVDACQ 120 (168) T ss_dssp BBCCHHHHHHHHHHTTCEEEEECTT T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEE T ss_conf 3580888888875058636875211 No 300 >>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} (A:) Probab=36.80 E-value=11 Score=16.69 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=45.4 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HH---HH-----------HCCHHHHHHHHHHCCCEEEE Q ss_conf 110367999999997410035767775899951688-84---44---22-----------00769999999748904885 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---ED---LW-----------HFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eD---L~-----------~FN~e~laraI~~~~iPVis 245 (529) .....++..++..+.... .+- +||.+|.| .. -| .+ .-.-..+..++..||.|||. T Consensus 38 ~~~~~~l~~~l~~~~~d~------~~~-~vvi~g~g~~f~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Ia 110 (258) T 3lao_A 38 SAXLADLALAXGEYERSE------ESR-CAVLFAHGEHFTAGLDLXELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVV 110 (258) T ss_dssp HHHHHHHHHHHHHHHHCT------TCC-EEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEE T ss_pred HHHHHHHHHHHHHHHHCC------CCE-EEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 999999999999997399------954-9999778986677871776353320345544555666999999738998899 Q ss_pred EE-CCCCCC-HHHHHHHCCCCCCCHH Q ss_conf 20-577752-5898864123777214 Q gi|254780791|r 246 AI-GHETDW-TLADYAADLRAPTPTG 269 (529) Q Consensus 246 gI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529) +| ||=.-- .-.-+.+|+|..|+++ T Consensus 111 av~G~a~GgG~~lalacD~ria~~~a 136 (258) T 3lao_A 111 AVQGTCWTAGIELXLNADIAVAARGT 136 (258) T ss_dssp EECSEEETHHHHHHHTSSEEEEETTC T ss_pred EEECEECCCCCHHHHHHHHHHHHHCC T ss_conf 98085715753655403564350137 No 301 >>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (G:123-209) Probab=36.77 E-value=21 Score=14.16 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=49.3 Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE--EEC Q ss_conf 8999997054356888627999874-8947999997352105866814598899999966752884379999971--016 Q gi|254780791|r 35 VCVRGEISGYRGIHSSGHAYFSLKD-NHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESL--IPS 111 (529) Q Consensus 35 ~~v~gEis~~~~~~~sGH~Yf~lkd-~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i--~~~ 111 (529) =-|.|.|++.. ..| ||-+|-. -.|-+.---+.......+-.++.|+.|.++. .--.+.|...|..... .+. T Consensus 7 diV~G~V~~i~---~~g-~fVdi~~~~~g~l~is~~~~~~~~~~~~l~~Gd~V~a~V--~~vd~~~~i~Ls~k~~~~~~~ 80 (87) T 2nn6_G 7 DHVIGIVTAKS---GDI-FKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQF--VVANKDMEPEMVCIDSCGRAN 80 (87) T ss_dssp EEEEEEEEEEE---TTE-EEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEE--EECCTTSCCEEECSBTTTTBC T ss_pred CEEEEEEEEEC---CCE-EEEECCCCCCEEECCHHCCCCHHCCCCCCCCCCEEEEEE--EEECCCCCEEEEEECCCCCCC T ss_conf 99999998982---873-899848985048750206770010476689999999999--994589975899863666434 Q ss_pred CCCHH Q ss_conf 80079 Q gi|254780791|r 112 GSGTL 116 (529) Q Consensus 112 g~G~l 116 (529) +.|.| T Consensus 81 ~~G~l 85 (87) T 2nn6_G 81 GMGVI 85 (87) T ss_dssp CCCSC T ss_pred CCCCC T ss_conf 66724 No 302 >>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus HB8} PDB: 1x1e_A* 2ekq_A (A:) Probab=36.56 E-value=22 Score=14.14 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=55.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEE---------------EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 289998478425899999986305975899---------------97210011110367999999997410035767775 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVI---------------IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPD 210 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~---------------~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D 210 (529) .|++|||..++--=.-+.+.+.++- .+|+ .+.+-|+-..+....+..+.... ..+| T Consensus 2 ~Kv~lITGas~GIG~aia~~la~~G-a~Vi~~~r~~~~~~~~~~~~~~~dv~~~~~v~~~~~~~~~~~--------g~iD 72 (239) T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARG-YRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEAL--------GGLH 72 (239) T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCHHHHHHHTCEEEECCTTTSCHHHHHHHHHHHH--------TSCC T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHC--------CCCC T ss_conf 9889996787589999999999879-989999799999998669879984358899999999999981--------9998 Q ss_pred EEEEECCCCCHHHHHHCCHHHHHHHH Q ss_conf 89995168884442200769999999 Q gi|254780791|r 211 IIILARGGGSIEDLWHFNDEMIVRAI 236 (529) Q Consensus 211 ~iii~RGGGS~eDL~~FN~e~laraI 236 (529) ++|-.=|.+....++-.++|..-+.+ T Consensus 73 ilinnAg~~~~~~~~~~~~~~~~~~~ 98 (239) T 2ekp_A 73 VLVHAAAVNVRKPALELSYEEWRRVL 98 (239) T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHH T ss_pred EEEECCCCCCCCCHHHCCHHHHHHHH T ss_conf 99989988999990459999999999 No 303 >>1yg2_A Gene activator APHA; virulence factor, winged helix, transcription factor; 2.20A {Vibrio cholerae} (A:1-89) Probab=36.16 E-value=20 Score=14.48 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=39.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC Q ss_conf 8007999999999976540122610016310265289998478425899999986305 Q gi|254780791|r 112 GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR 169 (529) Q Consensus 112 g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r 169 (529) ..|.+|.. .++|.++|+........--..++++=-||..+-+.+.+.+....+| T Consensus 36 ~~g~iY~~----L~~L~~~GlI~~~~~~~~~~~~rk~Y~iT~~G~~~l~~~l~~~~~~ 89 (89) T 1yg2_A 36 SHQQVYRE----LNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH 89 (89) T ss_dssp CHHHHHHH----HHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCCC T ss_pred CCCCHHHH----HHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCCCC T ss_conf 97819999----9999977974788520689987637788888999999998555458 No 304 >>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:1-106,A:247-290) Probab=35.76 E-value=22 Score=14.04 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=54.0 Q ss_pred CEEEEEECCCH-HHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 28999847842-58999999863---059758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSPTG-AVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~~~-a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) -+||||.+..+ --+..+.+-+. ++.++.+++.++ ++.+..-.++|+.+-.. .+|.|||+=..+. T Consensus 3 ~~Igvi~~~~~~~f~~~i~~gie~aa~~~G~~v~l~~~----~~d~~~~~~~i~~l~~~-------~vdgIIi~~~~~~- 70 (150) T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS----QNDTAKESAHFDAIIAA-------GYDAIIFNPTDAD- 70 (150) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHT-------TCSEEEECCSCTT- T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHC-------CCCEEEEECCCCC- T ss_conf 98999948998989999999999999985998999968----99989999999999965-------9986987315652- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEEC Q ss_conf 442200769999999748904885205 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIG 248 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIG 248 (529) ........+.+..||||+-=. T Consensus 71 ------~~~~~i~~l~~~gIPvV~id~ 91 (150) T 2fn9_A 71 ------GSIANVKRAKEAGIPVFCVDR 91 (150) T ss_dssp ------TTHHHHHHHHHTTCCEEEESS T ss_pred ------CHHHHHHHHHHCCCCCEEECC T ss_conf ------149999999975996256436 No 305 >>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276) Probab=35.57 E-value=22 Score=14.02 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=50.1 Q ss_pred EEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 8999847-842589999998630---597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 147 IIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 147 ~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) .||||.. .+...+..+++-+.+ .+++.+.++.+.- .+......++.+... ++|.||+.=..-+- T Consensus 1 TIgviv~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~----~~~~~~~~i~~ll~~-------~vDGIIl~~~~~~~- 68 (142) T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPILS----LARLKRYLENTTLAY-------LTDGLILASYDLTE- 68 (142) T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCCCS----CCCCC---------C-------CCSEEEEESCCCC-- T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEECCCCHH- T ss_conf 989998888788999999999999998699899997899----869999999999855-------89878984133006- Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECCC---CCCHHHHHH Q ss_conf 4220076999999974890488520577---752589886 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGHE---TDWTLADYA 259 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGHE---~D~Tl~D~V 259 (529) ...+.+....+|||. +|++ .|+..+|.| T Consensus 69 --------~~~~~l~~~~iPvV~-id~~~~~~~~V~~Dn~ 99 (142) T 2h0a_A 69 --------RFEEGRLPTERPVVL-VDAQNPRYDSVYLDNV 99 (142) T ss_dssp -------------CCSCSSCEEE-ESSCCTTSEEEEECSH T ss_pred --------HHHHHHHHHCCCCCC-CCCCCCCCEEEEECHH T ss_conf --------789987651465212-2235764217873119 No 306 >>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} (A:) Probab=35.33 E-value=20 Score=14.47 Aligned_cols=14 Identities=21% Similarity=0.088 Sum_probs=9.8 Q ss_pred CCCCCCEEEEEEEE Q ss_conf 81459889999996 Q gi|254780791|r 79 LPEEGIEFLVIGKI 92 (529) Q Consensus 79 ~~~~G~~v~~~g~~ 92 (529) .|+.|+.|.+.|.. T Consensus 127 ~~~~g~~v~~~G~p 140 (239) T 1l1j_A 127 KVKIGEWAIAIGNP 140 (239) T ss_dssp GCCTTCEEEEEECT T ss_pred CCCCCCEEEEEECC T ss_conf 13569989998678 No 307 >>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} (A:) Probab=35.33 E-value=22 Score=13.99 Aligned_cols=69 Identities=9% Similarity=-0.073 Sum_probs=39.2 Q ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH Q ss_conf 99998630597589997210011110367999999997410035767775899951688844422007699999997 Q gi|254780791|r 161 DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA 237 (529) Q Consensus 161 D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~ 237 (529) +.+..+.+.++-++..+++=|.-.++...+++.+... ...+|++|-.-|.+....+.-+.+++.-+.+- T Consensus 52 ~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~--------~g~idilvnnag~~~~~~~~~~~~~~~~~~~~ 120 (256) T 3ezl_A 52 VKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE--------VGEIDVLVNNAGITRDVVFRKMTREDWQAVID 120 (256) T ss_dssp HHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH--------TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCCEEEECCCCCCCCCHHHCCHHHHHHHHH T ss_conf 9999999844997899975779999999999999998--------19986999889877777732399999999999 No 308 >>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} (A:) Probab=35.23 E-value=23 Score=13.98 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=55.4 Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE---------------------EEECCCCCCCHHHHHHHHHHHH Q ss_conf 6310265289998478425899999986305975899---------------------9721001111036799999999 Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI---------------------IFPVKVQGDECPKEIANAILQL 197 (529) Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~---------------------~~p~~vQG~~a~~~i~~ai~~~ 197 (529) .+.+.+-.|+++||..++--=.-+.+.+.++- .+|+ .+.+-|........+++.+... T Consensus 22 ~~~~~l~gk~vlITGas~GIG~aiA~~la~~G-~~V~i~~r~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 100 (277) T 3gvc_A 22 MNHPDLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAA 100 (277) T ss_dssp -----CTTCEEEETTTTSTHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 99989999989994878789999999999879-98999969889999999985897389984589999999999999985 Q ss_pred HHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH Q ss_conf 7410035767775899951688844422007699999997 Q gi|254780791|r 198 NTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA 237 (529) Q Consensus 198 ~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~ 237 (529) . ..+|++|-.-|++...+++.+++++.-+.+. T Consensus 101 ~--------g~idilvnnag~~~~~~~~~~~~~~~~~~~~ 132 (277) T 3gvc_A 101 F--------GGVDKLVANAGVVHLASLIDTTVEDFDRVIA 132 (277) T ss_dssp H--------SSCCEEEECCCCCCCBCTTTCCHHHHHHHHH T ss_pred C--------CCCCEEEECCCCCCCCCHHHCCHHHHHHHHH T ss_conf 8--------9985899899899999903499999999999 No 309 >>2qf3_A Protease DEGS; periplasmic stress sensor, HTRA, allosteric activation, hydrolase; 2.04A {Escherichia coli K12} (A:) Probab=35.20 E-value=23 Score=13.97 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=6.7 Q ss_pred CCCCEEEEEEEE Q ss_conf 459889999996 Q gi|254780791|r 81 EEGIEFLVIGKI 92 (529) Q Consensus 81 ~~G~~v~~~g~~ 92 (529) +.|..|.+.|.. T Consensus 137 ~~g~~v~~~g~p 148 (243) T 2qf3_A 137 HIGDVVLAIGNP 148 (243) T ss_dssp CTTBEEEEEECG T ss_pred CCCEEEEEEECC T ss_conf 442289998223 No 310 >>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} (A:) Probab=34.98 E-value=23 Score=13.94 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=31.9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-HHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 100111103679999999974100357677758999516888-4442200769999999748904885 Q gi|254780791|r 179 VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-IEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 179 ~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~eDL~~FN~e~laraI~~~~iPVis 245 (529) ..+.+......|++..+.. ++|+||+++-|.+ +..+ .|.+ ..-+-+-++++||+. T Consensus 80 ~~~~~g~~~~~I~~~a~~~----------~~dliviG~~~~~~~~~~-~~gs-~~~~ll~~~~~pVli 135 (137) T 2z08_A 80 ALLLEGVPAEAILQAARAE----------KADLIVMGTRGLGALGSL-FLGS-QSQRVVAEAPCPVLL 135 (137) T ss_dssp EEEEESSHHHHHHHHHHHT----------TCSEEEEESSCTTCCSCS-SSCH-HHHHHHHHCSSCEEE T ss_pred EEEEECCHHHHHHHHHHHH----------HHHHEEECCCCCCCCCCC-CCCH-HHHHHHHCCCCCEEE T ss_conf 9998057489999987654----------445225556799851103-1470-999999648998999 No 311 >>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} (A:) Probab=34.67 E-value=23 Score=13.91 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=58.4 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-------------EEECCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 310265289998478425899999986305975899-------------9721001111036799999999741003576 Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI-------------IFPVKVQGDECPKEIANAILQLNTLKEGRTC 206 (529) Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-------------~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~ 206 (529) +.|.+-.|+++||..++--=..+.+.+.++. .+|+ .+.+-|.+..+...++..+.... T Consensus 9 ~~~~l~gk~vlVTGas~GIG~aia~~la~~G-a~V~~~~~~~~~~~~~~~~~~d~~~~~~i~~~~~~~~~~~-------- 79 (247) T 1uzm_A 9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQ-------- 79 (247) T ss_dssp CCCCCCCCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHH-------- T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCHHCCCEEEEEECCCHHHHHHHHHHHHHHC-------- T ss_conf 9959999979993888889999999999879-9899997982210675389964489999999999999856-------- Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHH Q ss_conf 777589995168884442200769999999 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI 236 (529) ..+|++|-.-|.+-..++.-+++++.-+.+ T Consensus 80 g~id~linnAg~~~~~~~~~~~~~~~~~~~ 109 (247) T 1uzm_A 80 GPVEVLVSNAGLSADAFLMRMTEEKFEKVI 109 (247) T ss_dssp SSCSEEEEECSCCC-----CCCHHHHHHHH T ss_pred CCCEEEEEECCCCCCCCHHHCCHHHHHHHH T ss_conf 982389875112465226659999999999 No 312 >>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1} (A:1-108) Probab=34.62 E-value=23 Score=13.90 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=52.0 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) +||-||.. .+...+++...-+.|++++.... +--.|++.+... .||+||+=- .|= T Consensus 4 ~~VLiVdd--~~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~l~~~-------~~dliilD~------~lp 58 (108) T 3c3m_A 4 YTILVVDD--SPXIVDVFVTXLERGGYRPITAF----------SGEECLEALNAT-------PPDLVLLDI------XXE 58 (108) T ss_dssp CEEEEECS--CHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEEES------CCS T ss_pred CEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CCHHHHHHHHHH-------CCCCEEECC------CCC T ss_conf 98999989--89999999999998799999833----------531189988642-------332044112------568 Q ss_pred HCCHHHHHHHHHH----CCCEEEEEECCCCCC Q ss_conf 0076999999974----890488520577752 Q gi|254780791|r 226 HFNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529) Q Consensus 226 ~FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529) ..|-.++++.|-+ ..+|||-=-|+.... T Consensus 59 ~~dG~~l~~~ir~~~~~~~~Pii~lt~~~~~~ 90 (108) T 3c3m_A 59 PXDGWETLERIKTDPATRDIPVLXLTAKPLTP 90 (108) T ss_dssp SSCHHHHHHHHHHSTTTTTSCEEEEESSCCCH T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEECCCCHH T ss_conf 99869999999848655799889984578799 No 313 >>1pk6_B C1Q, complement C1Q subcomponent, B chain precursor; complement system, immunology, jellyroll, IGG, immune system; 1.85A {Homo sapiens} (B:) Probab=34.62 E-value=23 Score=13.90 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=32.4 Q ss_pred CCCCCCCCCCEEEEEEE---CCCCEEEEEEECCCCCC------------------CCCCCCCCCEEEEEEEEE--EECCC Q ss_conf 05435688862799987---48947999997352105------------------866814598899999966--75288 Q gi|254780791|r 42 SGYRGIHSSGHAYFSLK---DNHSRIDAIIWKGTLNK------------------IEFLPEEGIEFLVIGKIT--TFPGS 98 (529) Q Consensus 42 s~~~~~~~sGH~Yf~lk---d~~a~i~~~~~~~~~~~------------------~~~~~~~G~~v~~~g~~~--~y~~~ 98 (529) .-|+ .+..|.+||+.- .....+...+-++.... +-..++.||+|.+...-. +|... T Consensus 40 G~Ft-~p~~GvY~F~~~~~~~~~~~~~v~l~~n~~~~~~~~~~~~~~~~~~~S~s~il~L~~GD~V~l~l~~~~~~~~~~ 118 (132) T 1pk6_B 40 GKFT-CKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGME 118 (132) T ss_dssp TEEE-CSSCEEEEEEEEEEESSCEEEEEEEESSSEEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEEEEEECCBCBT T ss_pred CEEE-CCCCCEEEEEEEEEECCCEEEEEEEEEECCEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCEEECCC T ss_conf 8697-775748999999994796488888840042489998137998643286899999089999999996896075379 Q ss_pred CEE Q ss_conf 437 Q gi|254780791|r 99 SKY 101 (529) Q Consensus 99 g~~ 101 (529) ..| T Consensus 119 ~~~ 121 (132) T 1pk6_B 119 GAN 121 (132) T ss_dssp TBC T ss_pred CCC T ss_conf 994 No 314 >>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii OT3} (A:23-266) Probab=34.46 E-value=14 Score=15.71 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=18.7 Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEECCCCCH Q ss_conf 11110367999999997410035767775-89995168884 Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPD-IIILARGGGSI 221 (529) Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D-~iii~RGGGS~ 221 (529) -|-.|+.+|.+.++.+.. -| ||+++-||||- T Consensus 82 ~s~~Aa~~il~~~~~~~~---------~dlvl~LiSGGgSA 113 (244) T 1x3l_A 82 KSILGAKEALSILNRARE---------NDIVFILISGGGSA 113 (244) T ss_dssp HHHHHHHHHHHHHHHCCT---------TSEEEEEECTTHHH T ss_pred HHHHHHHHHHHHHHHCCC---------CCEEEEEEECCCCC T ss_conf 789999999999970898---------77489998478631 No 315 >>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A* (A:28-234,A:388-429) Probab=34.46 E-value=23 Score=13.88 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=60.9 Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHH----HHCCC-EEEEEEECCCCC------------------------------CCH Q ss_conf 26528999847-8425899999986----30597-589997210011------------------------------110 Q gi|254780791|r 143 FIPKIIAVITS-PTGAVIRDILQRI----SCRFP-LRVIIFPVKVQG------------------------------DEC 186 (529) Q Consensus 143 ~~p~~i~vits-~~~a~~~D~~~~~----~~r~p-~~~~~~p~~vQG------------------------------~~a 186 (529) .-+++|||+|| -...++.++++-+ .++++ .+|+-+.-=.+| -.. T Consensus 68 ~~~~~i~IvtsGG~aPGlN~vI~giv~~l~~~~~~~~v~G~~~G~~GL~~~~~~~~~~lt~~~v~~i~~~GGs~LGssR~ 147 (249) T 2hig_A 68 PTETTIGIVTCGGICPGLNDVIRSITLTGINVYNVKRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGTILGSSRG 147 (249) T ss_dssp GGGCEEEEEECSSCCTTHHHHHHHHHHHHHHHHCCSEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSCSSCCCCS T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEECCCCC T ss_conf 77878999886887476899999999999997599389998620588615986421018999984287479717206899 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH Q ss_conf 367999999997410035767775899951688844422007699999997489048852057775258 Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL 255 (529) Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl 255 (529) ....-++++.+.+++ +|.++++=|-||......+.+|-..+ .++|+|| ||-.-+|--| T Consensus 148 ~~~~~~i~~~l~~~~-------I~~LviIGGdgS~~~a~~L~e~~~~~---~~~i~Vv-gIPKTIDNDi 205 (249) T 2hig_A 148 PQDPKEMVDTLERLG-------VNILFTVGGDGTQRGALVISQEAKRR---GVDISVF-GVPKTIDNDL 205 (249) T ss_dssp CCCHHHHHHHHHHHT-------CSEEEEEECHHHHHHHHHHHHHHHHH---TCCCEEE-EEECCTTSSC T ss_pred CCCHHHHHHHHHHHC-------CCEEEEECCHHHHHHHHHHHHHHHHC---CCCCEEE-ECCCCCCCCC T ss_conf 745999999999859-------98899964707899999999998861---8983288-3364226777 No 316 >>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, PSI-2, protein structure initiative; 2.80A {Archaeoglobus fulgidus} (A:) Probab=34.45 E-value=23 Score=13.88 Aligned_cols=80 Identities=14% Similarity=0.214 Sum_probs=54.9 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 65289998478425899999986305975-89997210011110367999999997410035767775899951688844 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) .-++|+||..+....- | + -.++ ++ |+ -..+.++.++|+.+-... ++.+|+| .| T Consensus 8 ~m~~IaViGd~dtv~G--F----r-LaGi~~~--~~-----v~~~ee~~~~l~~l~~~~------~~gII~i------te 61 (102) T 2i4r_A 8 HSHXLAVVGDPDFTIG--F----X-LAGISDI--YE-----VTSDEEIVKAVEDVLKRD------DVGVVIX------KQ 61 (102) T ss_dssp -CCEEEEEECHHHHHH--H----H-HTTCCCE--EE-----CCSHHHHHHHHHHHHHCS------SEEEEEE------EG T ss_pred CCEEEEEEECHHHHHH--H----H-HHCCCCC--CC-----CCCHHHHHHHHHHHHCCC------CEEEEEE------EH T ss_conf 4279999958899888--8----9-8288751--66-----899899999999985279------8489997------08 Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECC Q ss_conf 422007699999997489048852057 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGH 249 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGH 249 (529) ++..--.+.+-+.+.++.+|+|.-|.- T Consensus 62 ~~~~~i~~~i~~~~~~~~~P~Ii~IP~ 88 (102) T 2i4r_A 62 EYLKKLPPVLRREIDEKVEPTFVSVGG 88 (102) T ss_dssp GGSTTSCHHHHTTTTTCCSSEEEEEC- T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 999874799999985689778999699 No 317 >>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482} (A:) Probab=34.36 E-value=23 Score=13.87 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=11.7 Q ss_pred EEEEEEEEECCCCEEEEEEE Q ss_conf 99999667528843799999 Q gi|254780791|r 87 LVIGKITTFPGSSKYQIIIE 106 (529) Q Consensus 87 ~~~g~~~~y~~~g~~ql~v~ 106 (529) ...-.|++|...|.-.+.|. T Consensus 131 ~~~~~i~if~gn~~a~v~v~ 150 (176) T 3fyf_A 131 SATVSIVLTGGTNQASVTIN 150 (176) T ss_dssp EEEEEEEECTTSSEEEEEEE T ss_pred EEEEEEEEECCCCEEEEEEC T ss_conf 89999999379953699976 No 318 >>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} (A:) Probab=34.23 E-value=23 Score=13.85 Aligned_cols=30 Identities=17% Similarity=0.486 Sum_probs=14.2 Q ss_pred CEEEEEEECCCCCC---CCCCCCCCCEEEEEEE Q ss_conf 47999997352105---8668145988999999 Q gi|254780791|r 62 SRIDAIIWKGTLNK---IEFLPEEGIEFLVIGK 91 (529) Q Consensus 62 a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~ 91 (529) ..+.++++-..... +......|.-|++.+. T Consensus 63 ~~vdGii~~~~~~~~~~~~~~~~~~~pvv~i~~ 95 (287) T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGR 95 (287) T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEESC T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEE T ss_conf 896789995687997999999965998899851 No 319 >>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} (A:94-292) Probab=34.11 E-value=23 Score=13.84 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=38.7 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCC-CEEEE-EEEC-------------CC-------C-CCCHHHHHHHHHHHHHHHC Q ss_conf 52899984784258999999863059-75899-9721-------------00-------1-1110367999999997410 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRF-PLRVI-IFPV-------------KV-------Q-GDECPKEIANAILQLNTLK 201 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~-p~~~~-~~p~-------------~v-------Q-G~~a~~~i~~ai~~~~~~~ 201 (529) |.||+++.|..++.+..++....... +.++. ++.. ++ + ......++.+.++.. T Consensus 2 ~~ki~~~gs~~~~~l~~ll~~~~~~~~~~~i~~vvt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 77 (199) T 3lou_A 2 RPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHPDFAPLAAQHGLPFRHFPITADTKAQQEAQWLDVFETS---- 77 (199) T ss_dssp CCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHH---- T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHC---- T ss_conf 8459999769983699999998779987489999548957599998626998999568885678999999999754---- Q ss_pred CCCCCCCCCEEEEECCCC Q ss_conf 035767775899951688 Q gi|254780791|r 202 EGRTCPRPDIIILARGGG 219 (529) Q Consensus 202 ~~~~~~~~D~iii~RGGG 219 (529) .+|++|++.-+. T Consensus 78 ------~~D~iv~~~~~~ 89 (199) T 3lou_A 78 ------GAELVILARYXQ 89 (199) T ss_dssp ------TCSEEEESSCCS T ss_pred ------CCCEEEEECCCC T ss_conf ------981999801267 No 320 >>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I (I:) Probab=33.98 E-value=23 Score=13.93 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=18.7 Q ss_pred CCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC Q ss_conf 76777589995168884442200769999999748 Q gi|254780791|r 205 TCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANS 239 (529) Q Consensus 205 ~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~ 239 (529) ...+||+.|-+.|||-..- -+.+.-+|+.+ T Consensus 54 ~~~~~Di~i~V~GGG~~gQ-----a~Air~aiara 83 (138) T 3jyv_I 54 KFSNIDIRVRVTGGGHVSQ-----VYAIRQAIAKG 83 (138) T ss_dssp SSSSEEEEEEEESCCTTTH-----HHHHHHHHHHT T ss_pred CCCCCCEEEEEECCCHHHH-----HHHHHHHHHHH T ss_conf 3365016999967864279-----86999999999 No 321 >>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:1-114,A:247-292) Probab=33.91 E-value=23 Score=13.81 Aligned_cols=87 Identities=13% Similarity=0.211 Sum_probs=55.2 Q ss_pred CCEEEEEECCCHH------HHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 5289998478425------89999998630---59758999721001111036799999999741003576777589995 Q gi|254780791|r 145 PKIIAVITSPTGA------VIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 145 p~~i~vits~~~a------~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) -..||||++..+. -+.++++.+.+ ...+.++++++. +.+......++.+... .+|.|||+ T Consensus 8 s~~Igvi~p~~~~~~~~~~f~~~l~~gi~~~~~~~g~~lil~~~~----~~~~~~~~~~~~l~~~-------~vDGiIi~ 76 (160) T 3k4h_A 8 TKTLGLVXPSSASKAFQNPFFPEVIRGISSFAHVEGYALYXSTGE----TEEEIFNGVVKXVQGR-------QIGGIILL 76 (160) T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCC----SHHHHHHHHHHHHHTT-------CCCEEEES T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHCC-------CCCEEEEE T ss_conf 797999976776564448899999999999999859999998389----9889999999998637-------86657653 Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 1688844422007699999997489048852057775 Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETD 252 (529) Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D 252 (529) -..- +...++...+..||+|. |+...+ T Consensus 77 ~~~~---------~~~~~~~l~~~~iPvV~-id~~~~ 103 (160) T 3k4h_A 77 YSRE---------NDRIIQYLHEQNFPFVL-IGKPYD 103 (160) T ss_dssp CCBT---------TCHHHHHHHHTTCCEEE-ESCCSS T ss_pred CCCC---------CCHHHHHHHHCCCCCCC-CCCCCC T ss_conf 0234---------31233345532532233-465544 No 322 >>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:1-112,A:258-309) Probab=33.90 E-value=24 Score=13.81 Aligned_cols=100 Identities=8% Similarity=0.032 Sum_probs=58.4 Q ss_pred CEEEEEECCCHHHHHHH-HHHHH---HCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 28999847842589999-99863---059-75899972100111103679999999974100357677758999516888 Q gi|254780791|r 146 KIIAVITSPTGAVIRDI-LQRIS---CRF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 146 ~~i~vits~~~a~~~D~-~~~~~---~r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) .+|||+.+.-..-+... ++-+. +.. .+.+.++++.- -...-.+.++.+-.. ++|.|||.=.... T Consensus 3 ~~IGv~~~~~~d~f~~~l~~gi~~~a~~~~g~~l~~~~~~~----d~~~q~~~i~~li~~-------~vDgIIi~~~d~~ 71 (164) T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN----DQSKQNDQIDVLLAK-------GVKALAINLVDPA 71 (164) T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEECTT----CHHHHHHHHHHHHHT-------TCSEEEECCSSGG T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC----CHHHHHHHHHHHHHC-------CCCEEEEECCCCH T ss_conf 88999969998999999999999999876993799975999----999999999999975-------9988997132101 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCC Q ss_conf 4442200769999999748904885205777525898864-1237 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA-DLRA 264 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA-D~Ra 264 (529) ....+...+.+..||||.- +.+.+..-.++|. |... T Consensus 72 -------~~~~~i~~a~~agIPvV~v-n~~~~~~~~~~v~~d~~~ 108 (164) T 2fvy_A 72 -------AAGTVIEKARGQNVPVVFF-NKEPSRKALDSYDKAYYV 108 (164) T ss_dssp -------GHHHHHHHHHTTTCCEEEE-SSCCCHHHHHTCTTEEEE T ss_pred -------HHHHHHHHHHHCCCCEECC-CCCCCCCCCCCCCCCEEE T ss_conf -------3699999998459630003-654444323357874078 No 323 >>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} (A:43-218) Probab=33.84 E-value=24 Score=13.80 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=54.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHH Q ss_conf 1110367999999997410035767775899951-68884442200769999999748904885205777--52589886 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHET--DWTLADYA 259 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~--D~Tl~D~V 259 (529) +.+....+++.|..++.... .-.+++.+- .||+.. .-..++.+|..++.||++=++..- -=+++=.. T Consensus 13 ~~~~~~~i~~~l~~~~~~~~-----~~~i~l~InSpGG~v~-----~~~~i~~~i~~~~~~v~~~~~g~aaS~a~~i~~a 82 (176) T 1y7o_A 13 EDNXANSVIAQLLFLDAQDS-----TKDIYLYVNTPGGSVS-----AGLAIVDTXNFIKADVQTIVXGXAASXGTVIASS 82 (176) T ss_dssp CHHHHHHHHHHHHHHHHHCT-----TSCEEEEEEECCBCHH-----HHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTT T ss_pred CHHHHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHH-----HHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEE T ss_conf 68999999999999863376-----6757998038878776-----8999999998565664999865745755224551 Q ss_pred HCCCCCCCHHH Q ss_conf 41237772145 Q gi|254780791|r 260 ADLRAPTPTGA 270 (529) Q Consensus 260 AD~Ra~TPTaA 270 (529) +|.+.-.|++- T Consensus 83 ~~~~~~~~~~~ 93 (176) T 1y7o_A 83 GAKGKRFXLPN 93 (176) T ss_dssp SCTTCEEECTT T ss_pred CCCCCEEEEHH T ss_conf 26883697255 No 324 >>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV} (A:) Probab=33.69 E-value=18 Score=14.83 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.3 Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHC Q ss_conf 5168884442200769999999748 Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANS 239 (529) Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~ 239 (529) .+|||-..||.-|=+|.|---|++- T Consensus 24 ~qGggrKGDLSrFiEeAVr~~ife~ 48 (51) T 2k6l_A 24 AQGGGRKGDLSRFIEDAVRAYLFER 48 (51) T ss_dssp HHCSCCSSCHHHHHHHHHHHHHHHH T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 5079864429999999999999998 No 325 >>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259) Probab=33.47 E-value=24 Score=13.76 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=57.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH-CCC--EEEEEEE----CCCCCCCHHHHHHH Q ss_conf 9999997654012261001631026528999847842589999998630-597--5899972----10011110367999 Q gi|254780791|r 120 LEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISC-RFP--LRVIIFP----VKVQGDECPKEIAN 192 (529) Q Consensus 120 ~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~-r~p--~~~~~~p----~~vQG~~a~~~i~~ 192 (529) ..++.++|++.|+ +++|||..++.-..++...+.. .+. +..++-. +.+=|+.-...|.. T Consensus 28 ~~e~L~~L~~~G~--------------~~~iiTN~~~~~~~~~~~~L~~~Gl~~~f~~ii~~~p~~~~~VGD~~~~Di~~ 93 (140) T 2ho4_A 28 AQEALKRLRATSV--------------XVRFVTNTTKETKKDLLERLKKLEFEISEDEIFTSAPEEAVXIGDDCRDDVDG 93 (140) T ss_dssp HHHHHHHHHTSSC--------------EEEEEECCSSCCHHHHHHHHHHTTCCCCGGGEEEHCGGGEEEEESCTTTTHHH T ss_pred HHHHHHHHHHCCC--------------CEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECHCCCCCEEECCCHHHHHHH T ss_conf 9999999998699--------------88999489989999999998630467770057217631124743783758999 Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHC Q ss_conf 99999741003576777589995168884442200 Q gi|254780791|r 193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF 227 (529) Q Consensus 193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~F 227 (529) |-.. .+..|.+.+|.++.+++... T Consensus 94 a~~~-----------G~~ti~v~~g~~~~~~~~~~ 117 (140) T 2ho4_A 94 AQNI-----------GXLGILVKTGKYKAADEEKI 117 (140) T ss_dssp HHHT-----------TCEEEEESSTTCCTTGGGGS T ss_pred HHHC-----------CCCEEEECCCCCCHHHHHCC T ss_conf 9987-----------99299989999996786146 No 326 >>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis} (A:) Probab=33.19 E-value=22 Score=13.99 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=25.6 Q ss_pred HHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC Q ss_conf 220076999999974890488520577752589886412 Q gi|254780791|r 224 LWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL 262 (529) Q Consensus 224 L~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~ 262 (529) .-.+.|..|||++|.. +.+|.++...+-.-||.+ T Consensus 85 IPiv~d~~LAr~L~~~-----~~~g~~IP~ely~aVA~i 118 (123) T 2jli_A 85 VPILQRIPLARALYWD-----ALVDHYIPAEQIEATAEV 118 (123) T ss_dssp CCEEECHHHHHHHHHH-----CCTTSBCCGGGHHHHHHH T ss_pred CCEEECHHHHHHHHHC-----CCCCCCCCHHHHHHHHHH T ss_conf 9889789999999974-----889890699999999999 No 327 >>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3} (A:) Probab=33.11 E-value=24 Score=13.71 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHH-HCCHHHHHHHHHHCCCEEEEEECCC Q ss_conf 0367999999997410035767775899951-688844422-0076999999974890488520577 Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLW-HFNDEMIVRAIANSSIPIISAIGHE 250 (529) Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~-~FN~e~laraI~~~~iPVisgIGHE 250 (529) ....|+++.+.. ++|+||+++ |-|.....+ .-..+. -+..|+.||+.-=.+. T Consensus 105 ~~~~I~~~a~~~----------~~dliv~G~~~~~~~~~~~~gs~~~~---i~~~~~~pVlvv~~~~ 158 (170) T 2dum_A 105 PWDEIVKVAEEE----------NVSLIILPSRGKLSLSHEFLGSTVMR---VLRKTKKPVLIIKEVD 158 (170) T ss_dssp HHHHHHHHHHHT----------TCSEEEEESCCCCC--TTCCCHHHHH---HHHHCSSCEEEECCCC T ss_pred HHHHHHHHHHCC----------CCEEEEEECCCCCCCCCCCCCCHHHH---HHHCCCCCEEEECCCC T ss_conf 265555654136----------75079985368986554500769999---9962899899986874 No 328 >>2zwm_A Transcriptional regulatory protein YYCF; two-component system, response regulator, dimerization domain, phosphorylation site, cytoplasm; 2.04A {Bacillus subtilis} (A:) Probab=33.05 E-value=24 Score=13.70 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=47.0 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) .+||-||- +...+.++++.+-..|++++..+... ..|+..+... .||+||+-=. | T Consensus 2 ~~rVLiVD--D~~~~~~~l~~~L~~~g~~v~~a~~~----------~eAl~~l~~~-------~~dlvi~D~~------m 56 (130) T 2zwm_A 2 DKKILVVD--DEKPIADILEFNLRKEGYEVHCAHDG----------NEAVEMVEEL-------QPDLILLDIM------L 56 (130) T ss_dssp CCEEEEEC--SCHHHHHHHHHHHHHHTCEEEEECSH----------HHHHHHHHHH-------CCSEEEEETT------C T ss_pred CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHC-------CCCEEECCCC------C T ss_conf 97099998--99999999999999879999995869----------9999999837-------9998981477------9 Q ss_pred HHCCHHHHHHHHHH-CCCEEEEEECCCCCC Q ss_conf 20076999999974-890488520577752 Q gi|254780791|r 225 WHFNDEMIVRAIAN-SSIPIISAIGHETDW 253 (529) Q Consensus 225 ~~FN~e~laraI~~-~~iPVisgIGHE~D~ 253 (529) -..|...+++.+.. .++|+|.-.||.... T Consensus 57 P~~dg~~~~~~~~~~~~~~~i~~t~~~~~~ 86 (130) T 2zwm_A 57 PNKDGVEVCREVRKKYDMPIIMLTAKDSEI 86 (130) T ss_dssp SSSCHHHHHHHHHHHCCSCEEEEEETTCHH T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCCCHH T ss_conf 999999999999807999099997779999 No 329 >>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:1-114,A:247-295) Probab=33.02 E-value=24 Score=13.70 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=63.4 Q ss_pred CCEEEEEECC------CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 5289998478------42589999998630---59758999721001111036799999999741003576777589995 Q gi|254780791|r 145 PKIIAVITSP------TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 145 p~~i~vits~------~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) -+.||||.+. +..-+.++++-+.+ ..++.+.++++.- .+......++.+... .+|.+||. T Consensus 7 s~tIgvIip~~~~~~~~npff~~ii~gI~~~a~~~Gy~lii~~~~~----~~~~~~~~i~~l~~~-------~vDGiII~ 75 (163) T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNN----MNDLMDEVYKMIKQR-------MVDAFILL 75 (163) T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCS----HHHHHHHHHHHHHTT-------CCSEEEES T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEE T ss_conf 6989999906876665696899999999999998599899997899----979999999999966-------99849997 Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH Q ss_conf 168884442200769999999748904885205777525898864 Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA 260 (529) Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529) -. ..+....+.+.+..+|+|. |+...+..-+++|. T Consensus 76 ~~---------~~~~~~i~~l~~~~iPvVl-id~~~~~~~~~~V~ 110 (163) T 3hcw_A 76 YS---------KENDPIKQMLIDESMPFIV-IGKPTSDIDHQFTH 110 (163) T ss_dssp CC---------CTTCHHHHHHHHTTCCEEE-ESCCCSSGGGGSCE T ss_pred EC---------CCCCHHHHHHHHHHCCCEE-EECCCCCCCCCEEC T ss_conf 22---------5531567888864010002-53035667765302 No 330 >>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} (B:) Probab=32.85 E-value=24 Score=13.68 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=51.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) ++|+||--.++= .+.+.+.+.... .++.++|....- ...+... .++.+++.=|.++..|.| T Consensus 2 ~~i~iid~g~~~-~~~~~~~l~~~g-~~~~v~~~~~~~-------~~~~~~~----------~~~~~~~~g~~~~~~~~~ 62 (195) T 1qdl_B 2 DLTLIIDNYDSF-VYNIAQIVGELG-SYPIVIRNDEIS-------IKGIERI----------DPDRLIISPGPGTPEKRE 62 (195) T ss_dssp CEEEEEECSCSS-HHHHHHHHHHTT-CEEEEEETTTSC-------HHHHHHH----------CCSEEEECCCSSCTTSHH T ss_pred CEEEEEECCCCH-HHHHHHHHHHCC-CEEEEEECCCCC-------HHHHHHC----------CCCEEEECCCCCCCCCCC T ss_conf 879999788717-999999999789-937998489899-------9999864----------999799899999800022 Q ss_pred HCCHHHHHHHHHHCCCEEE Q ss_conf 0076999999974890488 Q gi|254780791|r 226 HFNDEMIVRAIANSSIPII 244 (529) Q Consensus 226 ~FN~e~laraI~~~~iPVi 244 (529) ......+.+...+..+||+ T Consensus 63 ~~~~~~~i~~~~~~~~PvL 81 (195) T 1qdl_B 63 DIGVSLDVIKYLGKRTPIL 81 (195) T ss_dssp HHTTHHHHHHHHTTTSCEE T ss_pred CCCCCHHHHHHHCCCCCEE T ss_conf 3336799999854799778 No 331 >>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopeptidase, ATP-dependent protease, hydrolase; 2.6A {Mycobacterium tuberculosis} (A:) Probab=32.52 E-value=25 Score=13.64 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=73.4 Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH Q ss_conf 98478425899999986305975899972100111103679999999974100357677758999516888444220076 Q gi|254780791|r 150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND 229 (529) Q Consensus 150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~ 229 (529) ..|++.+.+.-|+...+-+.- ++|..-.-+......+++.|..+...... +.=++.|-=+||+.. .- T Consensus 8 ~~~~~~~~~~~~i~~~~~~~~----ii~~~~~i~~~~~~~~~~~l~~~~~~~~~----~~i~l~InSpGG~v~-----~~ 74 (208) T 2cby_A 8 RSNSQGLSLTDSVYERLLSER----IIFLGSEVNDEIANRLCAQILLLAAEDAS----KDISLYINSPGGSIS-----AG 74 (208) T ss_dssp -------CHHHHHHHHHHTTT----EEEECSCBCHHHHHHHHHHHHHHHHHCSS----SCEEEEEEECCBCHH-----HH T ss_pred CCCCCCCCCCCHHHHHHHCCC----EEEECCEECHHHHHHHHHHHHHHHCCCCC----CCEEEECCCCCCCHH-----HH T ss_conf 347888666557989875378----89879868689999999999998664999----998986788878677-----89 Q ss_pred HHHHHHHHHCCCEEEEEECC--CCCCHHHHHHHCCCCCCCHHHH Q ss_conf 99999997489048852057--7752589886412377721456 Q gi|254780791|r 230 EMIVRAIANSSIPIISAIGH--ETDWTLADYAADLRAPTPTGAA 271 (529) Q Consensus 230 e~laraI~~~~iPVisgIGH--E~D~Tl~D~VAD~Ra~TPTaAA 271 (529) ..++.+|-.++.||++-+.- ----+++-..+|.+...|++=. T Consensus 75 ~~i~~~i~~~~~~v~~~~~g~aaSa~~~i~~a~d~~~~~~~~~~ 118 (208) T 2cby_A 75 MAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHA 118 (208) T ss_dssp HHHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTC T ss_pred HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCCEEECCCC T ss_conf 99999986305401453275424379999873798956887865 No 332 >>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} (A:242-511) Probab=32.51 E-value=25 Score=13.64 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCC Q ss_conf 79999999974100357677758999516888444220076999999974890 Q gi|254780791|r 189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSI 241 (529) Q Consensus 189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~i 241 (529) ++...++.+.... ++ .|++-||||..++|+ .+.-.|..+|| T Consensus 149 ~~~~~~e~l~~~~-------~~-~i~v~GGgs~s~~w~----q~~Advlg~~v 189 (270) T 3hz6_A 149 SLRWCAELLGXEK-------VG-LLKVVGGGARSEAWL----RXIADNLNVSL 189 (270) T ss_dssp HHHHHHHHHTGGG-------CC-EEEEESGGGGCHHHH----HHHHHHHTCEE T ss_pred HHHHHHHHHHCCC-------CC-EEEEECCHHHCHHHH----HHHHHHHCCCE T ss_conf 9999999960799-------88-799982555489999----99999868985 No 333 >>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A (A:1-125) Probab=32.40 E-value=25 Score=13.62 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.3 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 89998478425899999986305975899 Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVI 175 (529) Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~ 175 (529) |+-||+.|+|+|-..+.+.|.+++|..++ T Consensus 2 k~ivi~GpsgsGKt~la~~La~~~~~~ii 30 (125) T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV 30 (125) T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEE T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCEEE T ss_conf 69999798864789999999998799399 No 334 >>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} (A:9-120,A:264-285) Probab=32.31 E-value=25 Score=13.61 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=45.5 Q ss_pred CCCEEEEEEC-CCHHH--HHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 6528999847-84258--9999998630597--58999721001111036799999999741003576777589995168 Q gi|254780791|r 144 IPKIIAVITS-PTGAV--IRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 144 ~p~~i~vits-~~~a~--~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) .+-++++|-. .+.|. |.-.......+.+ ++++-+|..+ ...++.++|+.+|... .+|-|+|=+ T Consensus 25 ~~PkLaiI~vg~d~aS~~Yv~~k~k~a~~lGI~~~~~~l~~~~----~~~el~~~I~kLN~D~------~V~GIlVq~-- 92 (134) T 3l07_A 25 ITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHT----TESELLELIDQLNNDS------SVHAILVQL-- 92 (134) T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTC----CHHHHHHHHHHHHTCT------TCCEEEECS-- T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC----CHHHHHHHHHHHHCCC------CCCEEEEEC-- T ss_conf 9972799995897567999999999999748858999789998----8999999999996467------867799606-- Q ss_pred CCHHHHH-HCCHHHHHHHHHH Q ss_conf 8844422-0076999999974 Q gi|254780791|r 219 GSIEDLW-HFNDEMIVRAIAN 238 (529) Q Consensus 219 GS~eDL~-~FN~e~laraI~~ 238 (529) =|. .+|+..+..+|.- T Consensus 93 ----PLP~~id~~~i~~~I~P 109 (134) T 3l07_A 93 ----PLPAHINKNNVIYSIKP 109 (134) T ss_dssp ----SCCTTSCHHHHHHHSCG T ss_pred ----CCCCCCCHHHHHHCCCC T ss_conf ----76556106889860495 No 335 >>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} (A:172-238) Probab=32.31 E-value=25 Score=13.61 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=10.0 Q ss_pred HCCCEEEEECCC-CCEE Q ss_conf 314619998489-8895 Q gi|254780791|r 458 LKRGYTSIQDTN-NNFI 473 (529) Q Consensus 458 L~RGYaiv~~~~-GkiI 473 (529) --||||-|.+.+ |+++ T Consensus 23 ~GRGYAAVK~~~~g~v~ 39 (67) T 1c0m_A 23 WGRGYAAVKNRDTDKVI 39 (67) T ss_dssp ECSSEEEEEETTTCCEE T ss_pred EECCEEEEECCCCCCEE T ss_conf 71624999748888258 No 336 >>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} (A:279-530) Probab=32.13 E-value=25 Score=13.59 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=52.3 Q ss_pred CEEEEEEECCCC----CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHCCHHHHHH---HHHHCC Q ss_conf 758999721001----111036799999999741003576777589995168884---4422007699999---997489 Q gi|254780791|r 171 PLRVIIFPVKVQ----GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHFNDEMIVR---AIANSS 240 (529) Q Consensus 171 p~~~~~~p~~vQ----G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~FN~e~lar---aI~~~~ 240 (529) |+-|+-....|+ |..+...+.++++.+++.+ .=+|.++=.+|.. ++.+.-.-...++ +.+++. T Consensus 55 ~v~via~d~~~~gG~~~~~~~~K~~r~i~~a~~~~-------iPiv~l~dt~G~~~~~~~e~~~~~~~~~~~~~a~~~~~ 127 (252) T 1xny_A 55 PVGIVANQPMQFAGCLDITASEKAARFVRTCDAFN-------VPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEAT 127 (252) T ss_dssp EEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTT-------CCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCC T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC-------CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88897201333578756534899999999987558-------63899985344445579998628999999999997078 Q ss_pred CEEEEEECCC------CCCHHHHHHHCCCCCCCHHH Q ss_conf 0488520577------75258988641237772145 Q gi|254780791|r 241 IPIISAIGHE------TDWTLADYAADLRAPTPTGA 270 (529) Q Consensus 241 iPVisgIGHE------~D~Tl~D~VAD~Ra~TPTaA 270 (529) +|+|+-|-=. -=.....+.+|....+|++- T Consensus 128 vP~i~vi~g~~~gg~~~~~a~~~~~~d~~~a~~~a~ 163 (252) T 1xny_A 128 VPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQ 163 (252) T ss_dssp SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCE T ss_pred CCEEEEEECCCCCHHHHHCCCCCCCCCEEEECCCCE T ss_conf 886999977753023431166667888799978787 No 337 >>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} (A:119-311) Probab=32.00 E-value=25 Score=13.57 Aligned_cols=77 Identities=17% Similarity=0.082 Sum_probs=47.7 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH-HHCCCEEEEE--ECC Q ss_conf 8999721001111036799999999741003576777589995168884442200769999999-7489048852--057 Q gi|254780791|r 173 RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI-ANSSIPIISA--IGH 249 (529) Q Consensus 173 ~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI-~~~~iPVisg--IGH 249 (529) ..+||==.| ++.+..|-+++..+.... ..+++..||++|=-+--++=+.+.-+.+.+.+ ....+||+.+ +|| T Consensus 95 g~ILfLEd~--~e~~~~idR~L~~L~~~G---~f~~~~gii~G~f~~~~~~~~~~~~~~il~~~~~~~~~Pv~~~~~~GH 169 (193) T 1zl0_A 95 GSILVLEDV--GEPYYRLERSLWQLLESI---DARQLGAICLGSFTDCPRKEVAHSLERIFGEYAAAIEVPLYHHLPSGH 169 (193) T ss_dssp TCEEEEEEE--SCCHHHHHHHHHHHHHHT---TGGGCSEEEEEEEETCCCTTCSSCHHHHHHHHHHHTTCCEEECCSCSS T ss_pred CEEEEEECC--CCHHHHHHHHHHHHHHCC---CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCC T ss_conf 829999706--861789999999998708---521376799961577997651240999999987428982897999989 Q ss_pred CCCCH Q ss_conf 77525 Q gi|254780791|r 250 ETDWT 254 (529) Q Consensus 250 E~D~T 254 (529) -.+.. T Consensus 170 ~~p~~ 174 (193) T 1zl0_A 170 GAQNR 174 (193) T ss_dssp SSCCC T ss_pred CCCCE T ss_conf 99854 No 338 >>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, fatty acid biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} (A:) Probab=31.89 E-value=25 Score=13.56 Aligned_cols=88 Identities=17% Similarity=0.074 Sum_probs=54.2 Q ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE-----------------EECCCCCCCHHHHHHHHHHHHH Q ss_conf 00163102652899984784258999999863059758999-----------------7210011110367999999997 Q gi|254780791|r 136 QHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVII-----------------FPVKVQGDECPKEIANAILQLN 198 (529) Q Consensus 136 ~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~-----------------~p~~vQG~~a~~~i~~ai~~~~ 198 (529) .+..+...+--|++|||..++--=.-+.+.+.+.- .+|++ +++-|-...+..+. ++.+. T Consensus 4 ~~~~~~~~l~gk~vlVTGas~GIG~aia~~la~~G-a~V~~~~r~~~~~~~~~~~~~~~~~Dv~~~~~~~~~---~~~~~ 79 (249) T 3f9i_A 4 HHHHHMIDLTGKTSLITGASSGIGSAIARLLHKLG-SKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEE---CSNLI 79 (249) T ss_dssp -----CCCCTTCEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHH---HHHHH T ss_pred CCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHCCCCEEEECCCCCHHH---HHHHH T ss_conf 56786776789989993878789999999999879-999999799999999999856683499878999999---99999 Q ss_pred HHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH Q ss_conf 4100357677758999516888444220076999 Q gi|254780791|r 199 TLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI 232 (529) Q Consensus 199 ~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l 232 (529) . ....+|++|-.=|.+-..+++-.++|.. T Consensus 80 ~-----~~g~iD~lVnnAG~~~~~~~~~~~~e~~ 108 (249) T 3f9i_A 80 S-----KTSNLDILVCNAGITSDTLAIRMKDQDF 108 (249) T ss_dssp H-----TCSCCSEEEECCC-------------CH T ss_pred H-----HHCCCCEEEECCCCCCCCCHHHCCHHHH T ss_conf 9-----7599989998997667788123999999 No 339 >>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (A:56-212) Probab=31.74 E-value=23 Score=13.89 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=18.6 Q ss_pred CCEEEEEECCCHHHHHHHH----HHHHHCCCEEEEEE Q ss_conf 5289998478425899999----98630597589997 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDIL----QRISCRFPLRVIIF 177 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~----~~~~~r~p~~~~~~ 177 (529) |+-|.|+||...+.++|=+ +.++.+.+..|+.. T Consensus 89 p~~I~V~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v 125 (157) T 1m1n_A 89 NKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPV 125 (157) T ss_dssp CCCEEEEECTHHHHHTCCHHHHHHHHHHHHTCCEEEE T ss_pred CCEEEEECCCHHHHHCCCHHHHHHHHHHHHCCEEEEE T ss_conf 9889997887688853699999999877539879999 No 340 >>3b6y_A Gamma-interferon-inducible protein IFI-16; transcription factor, OB-fold, structural genomics, PSI-2, protein structure initiative; 2.35A {Homo sapiens} (A:111-200) Probab=31.48 E-value=25 Score=13.51 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=32.8 Q ss_pred EEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE Q ss_conf 9999970543568886279998748947999997352105866814598899999 Q gi|254780791|r 36 CVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG 90 (529) Q Consensus 36 ~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g 90 (529) .|-|+-.=.+-.-..-+.||.++|+.++|..|.. +++.++. =++||++-+.+ T Consensus 10 ~V~G~F~v~KK~v~~k~i~Y~I~D~TG~MeVvv~-G~~~ni~--CeeGDKLrL~c 61 (90) T 3b6y_A 10 FVNGVFEVHKKNVRGEFTYYEIQDNTGKMEVVVH-GRLTTIN--CEEGDKLKLTC 61 (90) T ss_dssp EEEEEEEEEEEEEETTEEEEEEECSSCEEEEEEE-SGGGGSC--CCTTCEEEEEE T ss_pred EEEEEEEEEEEEECCCEEEEEEECCCCCEEEEEE-CEEEECC--CCCCCEEEEEE T ss_conf 9968999999997267699998638873899995-6080014--68897489999 No 341 >>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} (A:9-123,A:273-301) Probab=31.41 E-value=25 Score=13.50 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=46.5 Q ss_pred CCCCEEEEEECCCHHH--HHHHHHHHHHCCC--EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 2652899984784258--9999998630597--58999721001111036799999999741003576777589995168 Q gi|254780791|r 143 FIPKIIAVITSPTGAV--IRDILQRISCRFP--LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 143 ~~p~~i~vits~~~a~--~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) ..|+=..|..+.+.|. |.-......+..+ ++++-+|..+ ...++++.|+.+|... .+|-|+| T Consensus 26 ~~P~LavIlvg~d~aS~~Yv~~k~k~a~~iGI~~~~~~l~~~~----se~ell~~I~~LN~D~------~V~GIlV---- 91 (144) T 1a4i_A 26 FTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTT----TESEVMKYITSLNEDS------TVHGFLV---- 91 (144) T ss_dssp CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTC----CHHHHHHHHHHHHHCT------TCCEEEE---- T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC----CHHHHHHHHHHHHCCC------CHHHHEE---- T ss_conf 9971799996998038999999999998665834998456420----0899999998761585------1421100---- Q ss_pred CCHHHHHH---CCHHHHHHHHH Q ss_conf 88444220---07699999997 Q gi|254780791|r 219 GSIEDLWH---FNDEMIVRAIA 237 (529) Q Consensus 219 GS~eDL~~---FN~e~laraI~ 237 (529) .-=|.. +|+..+..+|. T Consensus 92 --QlPLP~h~~id~~~i~~aI~ 111 (144) T 1a4i_A 92 --QLPLDSENSINTEEVINAIA 111 (144) T ss_dssp --CSSCCCSSCCCHHHHHHTSC T ss_pred --CCCCCCCCCHHHHHHHHCCC T ss_conf --16665544445788875259 No 342 >>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} (A:) Probab=31.27 E-value=26 Score=13.48 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.8 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCC-CEEEE Q ss_conf 899984784258999999863059-75899 Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRF-PLRVI 175 (529) Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~-p~~~~ 175 (529) ||+++.|.+++++.+++..+.... +.++. T Consensus 2 kI~~~gs~~~~~l~~ll~~~~~~~~~~~i~ 31 (212) T 1jkx_A 2 NIVVLISGNGSNLQAIIDACKTNKIKGTVR 31 (212) T ss_dssp EEEEEESSCCHHHHHHHHHHHTTSSSSEEE T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCCCEEE T ss_conf 799998268478999999887099998899 No 343 >>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens} (A:116-190) Probab=31.21 E-value=26 Score=13.47 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=33.2 Q ss_pred HHHHCCHHHHHCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEECCCCCC Q ss_conf 88716967773146199984898895777892999869999911099999950578887 Q gi|254780791|r 448 ILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKAPPKE 506 (529) Q Consensus 448 ~L~slsP~~~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~k~~~~~ 506 (529) -++..+|+.+|++- +++-..|..||.|.|.+.+-.-.-.|.+..|... T Consensus 14 F~~i~npkavLE~~-----------Lr~ystLT~Gd~i~i~~~~~~y~l~V~e~kP~~a 61 (75) T 2yuj_A 14 FLDITNPKAVLENA-----------LRNFACLTTGDVIAINYNEKIYELRVMETKPDKA 61 (75) T ss_dssp HHHSSCHHHHHHHH-----------HTTCCEECTTCEEEEESSSCEEEEEEEEESSSSS T ss_pred CCCCCCHHHHHHHH-----------HHCCCEEECCCEEEEEECCEEEEEEEEEECCCCE T ss_conf 53566489999999-----------7478000149999997599999999999778883 No 344 >>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (b:) Probab=31.06 E-value=26 Score=13.45 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=37.3 Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 77758999516888444220076999999974890488520577752589886 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ..+|+|+|. .+-.|...++.-..+.||||+=+-...|.+.+||+ T Consensus 117 ~~P~~iiv~---------dp~~~~~ai~Ea~~l~IPvIai~DTn~~p~~idy~ 160 (295) T 2zkq_b 117 REPRLLVVT---------DPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA 160 (295) T ss_dssp CCCSEEEES---------CTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEE T ss_pred CCCCEEEEE---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE T ss_conf 367702776---------66631588999875499989980378986457767 No 345 >>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A (A:1-205,A:290-316) Probab=31.03 E-value=26 Score=13.45 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=28.8 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 26528999847842589999998630597589997 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIF 177 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~ 177 (529) .-..+|-+|++|+|+|-..+.+.|.+++|..++.. T Consensus 7 ~~~~~iI~I~GpSGsGKttla~~La~~~~~~~i~~ 41 (232) T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISV 41 (232) T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 88995699989883279999999999869979960 No 346 >>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:117-211) Probab=31.00 E-value=26 Score=13.44 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=54.1 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 5289998478425899999986305975899972------1001111036799999999741003576777589995168 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP------VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p------~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) .+||||+|+=.-..-+-+..-+... +++|.-+- ..--|.-.+.+|..++..+... .+..|+|++.-.+ T Consensus 1 vkriai~TPY~~~v~~~~~~~~~~~-G~eV~~~~~l~~~~~~~ia~i~~~~i~~~~~~~~~d-----~p~adai~isCTn 74 (95) T 3ixl_A 1 VRRVALATAYIDDVNERLAAFLAEE-SLVPTGXRSLGITGVEAMARVDTATLVDLCVRAFEA-----APDSDGILLSSGG 74 (95) T ss_dssp CSEEEEEESSCHHHHHHHHHHHHHT-TCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHT-----STTCSEEEEECTT T ss_pred CCEEEEEECCHHHHHHHHHHHHHHC-CCEECCEEECCCCCCHHHCCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCC T ss_conf 9748997088689879999999987-973303110278852654037999999999999741-----8998789984788 Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 8844422007699999997489048852 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVisg 246 (529) |..++ -+.+.=....+||||. T Consensus 75 -----lrt~~--~i~~lE~~lG~PVisS 95 (95) T 3ixl_A 75 -----LLTLD--AIPEVERRLGVPVVSS 95 (95) T ss_dssp -----SCCTT--HHHHHHHHHSSCEEEH T ss_pred -----CCHHH--HHHHHHHHHCCCEEEH T ss_conf -----53788--9999999989889866 No 347 >>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:122-254,A:330-346) Probab=30.69 E-value=26 Score=13.40 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=47.6 Q ss_pred CCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 52899984784258--9999998630597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 145 PKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 145 p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) .++|+||++.+.-+ ..+.++..-+...++|.-....=.|..--.+++..|... ++|+||++=.+. T Consensus 17 ~k~vaii~~d~~~G~~~~~~~~~~l~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~----------~~d~Ii~~~~~~--- 83 (150) T 1usg_A 17 PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKE----------NIDFVYYGGYYP--- 83 (150) T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHT----------TCCEEEEESCHH--- T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHC----------CCCEEEEEECCH--- T ss_conf 5203674165201256787765544134422788873362111013688888753----------874699974443--- Q ss_pred HHHHCCHHHHHHHHHHC--CCEEEEEECC Q ss_conf 42200769999999748--9048852057 Q gi|254780791|r 223 DLWHFNDEMIVRAIANS--SIPIISAIGH 249 (529) Q Consensus 223 DL~~FN~e~laraI~~~--~iPVisgIGH 249 (529) .--.+.++..+. +.|++..-|= T Consensus 84 -----~~~~~~~~~~~~g~~~~~~~~~~~ 107 (150) T 1usg_A 84 -----EMGQMLRQARSVGLKTQFMGPEGV 107 (150) T ss_dssp -----HHHHHHHHHHHTTCCCEEEECGGG T ss_pred -----HHHHEEEECCCCCCCCEEEEEEEC T ss_conf -----443214101223556303310001 No 348 >>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391) Probab=30.29 E-value=26 Score=13.35 Aligned_cols=107 Identities=13% Similarity=-0.014 Sum_probs=59.7 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 6528999847842589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -.++|+||.+.+++-=+++...+.+ ..+.+|...-..-.|...-...+..|+.... ++|+|+++= + T Consensus 19 g~kkvavi~~dd~~yG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~~d~~~~v~~lk~~~a--------~pdaVil~~---~ 87 (181) T 3eaf_A 19 GQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAA--------DPDYVWCGN---T 87 (181) T ss_dssp CSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTT--------CCSEEEECS---C T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC--------CCCEEEEEC---C T ss_conf 36738999814783047899999999975367500466214311222202444444325--------642699952---5 Q ss_pred HHHHHHCCHHHHHHHHHH--CCCEEEEEECCCCCCHHH---HHHHCCCCCC Q ss_conf 444220076999999974--890488520577752589---8864123777 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIAN--SSIPIISAIGHETDWTLA---DYAADLRAPT 266 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~--~~iPVisgIGHE~D~Tl~---D~VAD~Ra~T 266 (529) -.|. -.++|+..+ .+.|++.+-|=-.+..+. +.+..+-..+ T Consensus 88 ~~~~-----~~~ikq~~~~g~~~~ii~~~~~~~~~~l~~~g~~~eG~~~~~ 133 (181) T 3eaf_A 88 ISSC-----SLLGRAXAKVGLDAFLLTNVWGFDERSPQLIGEGGYGKVFGI 133 (181) T ss_dssp HHHH-----HHHHHHHHHHTCCCEEEECGGGCSTTHHHHHCGGGTTSEEEE T ss_pred CHHH-----HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE T ss_conf 5267-----899999997399852787414688999997678636809998 No 349 >>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} (A:115-206) Probab=30.11 E-value=27 Score=13.33 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=28.4 Q ss_pred CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE Q ss_conf 86279998748947999997352105866814598899999 Q gi|254780791|r 50 SGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG 90 (529) Q Consensus 50 sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g 90 (529) .-+.||+++|+.++|..|.. +++.++ .=++||++-+.+ T Consensus 28 ~k~~~YeI~D~TG~MeVvv~-g~~~ni--~CeeGDKLrL~c 65 (92) T 2oq0_A 28 QKTTIYEIQDDRGKXDVVGT-GQCHNI--PCEEGDKLQLFC 65 (92) T ss_dssp SSEEEEEEEETTEEEEEEEE-GGGSSC--CCCTTCEEEEEE T ss_pred CCEEEEEEECCCCCEEEEEE-CCEEEC--CCCCCCEEEEEE T ss_conf 67489998538863899995-617001--468897489999 No 350 >>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:1-109,A:240-289) Probab=29.98 E-value=27 Score=13.31 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=54.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 28999847842589999998630---597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) ..||||++.+..-+.++++-+.+ ..++.++++++---. ...+.++.+... ++|.||+.-..=..+ T Consensus 13 ~~IGVI~~l~npF~~eii~gI~~~a~~~GY~lli~~~~~~e-----~e~~~l~~l~~~-------~VDGIIl~~~~~~~~ 80 (159) T 3k9c_A 13 RLLGVVFELQQPFHGDLVEQIYAAATRRGYDVXLSAVAPSR-----AEKVAVQALXRE-------RCEAAILLGTRFDTD 80 (159) T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTB-----CHHHHHHHHTTT-------TEEEEEEETCCCCHH T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH-----HHHHHHHHHHHC-------CCCEEEEECCCHHHH T ss_conf 98999953787699999999999999869989999489888-----999999999970-------975121102301588 Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 4220076999999974890488520577752589886 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) .+ ....-.+|+|. |+...+..-.|+| T Consensus 81 --------~~--~ll~~~iPvVl-Id~~~~~~~~~~V 106 (159) T 3k9c_A 81 --------EL--GALADRVPALV-VARASGLPGVGAV 106 (159) T ss_dssp --------HH--HHHHTTSCEEE-ESSCCSSTTSEEE T ss_pred --------HH--HHHHCCCCEEE-ECCCCCCCCCCCC T ss_conf --------99--87544477586-3244675556644 No 351 >>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling; 2.56A {Escherichia coli} (A:1-7,A:120-261) Probab=29.86 E-value=27 Score=13.30 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=49.1 Q ss_pred HCCCCCCCCCCCCCCCEEEEEEC-CC-HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 12261001631026528999847-84-25899999986305975899972100111103679999999974100357677 Q gi|254780791|r 131 GLFSDQHKNPIPFIPKIIAVITS-PT-GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPR 208 (529) Q Consensus 131 Glfd~~~k~~lP~~p~~i~vits-~~-~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~ 208 (529) +....-+..-++.-=+++.||-- .. |..+...++. ....+.+++.... .+-+++.+ T Consensus 33 av~~ll~~~~~~l~Gk~vvViGrs~~vG~pla~lL~~----~gatVt~~~~~t~------~l~e~~~~------------ 90 (149) T 1b0a_A 33 GIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL----AGCTTTVTHRFTK------NLRHHVEN------------ 90 (149) T ss_dssp HHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT----TTCEEEEECSSCS------CHHHHHHH------------ T ss_pred HHHHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHC----CCCCCCCCCCCCC------CHHHHHCC------------ T ss_conf 8999999851001003168843664200777765430----2344233322453------01223010------------ Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 7589995168884442200769999999748904885205777 Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHET 251 (529) Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~ 251 (529) -|+||.+=|.-.+-+.-++.+. .++--|||.. T Consensus 91 ADIVVsA~G~~~~i~~~~ik~g-----------avViDvG~~~ 122 (149) T 1b0a_A 91 ADLLIVAVGKPGFIPGDWIKEG-----------AIVIDVGINR 122 (149) T ss_dssp CSEEEECSCCTTCBCTTTSCTT-----------CEEEECCCEE T ss_pred HHHHHHHCCCCCCCCCCCCCCC-----------CEEEEECCEE T ss_conf 2455442057775540222678-----------7899803606 No 352 >>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase- like superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} (A:1-16,A:87-200) Probab=29.82 E-value=27 Score=13.29 Aligned_cols=52 Identities=2% Similarity=-0.135 Sum_probs=28.6 Q ss_pred CEEEEEECCCHHHHHHHHHHHH--HCCCEEEEEEECCCCCCCHHHHHHHHHHHHH Q ss_conf 2899984784258999999863--0597589997210011110367999999997 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRIS--CRFPLRVIIFPVKVQGDECPKEIANAILQLN 198 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~--~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~ 198 (529) -+++|+|+.+...+..++..+. +.|. .++.....-..+-.+.-+..+++..+ T Consensus 32 ~~~~i~Sn~~~~~~~~~l~~~gl~~~fd-~i~~~~~~~~~Kp~p~~~~~~~~~~g 85 (130) T 3cnh_A 32 YRXYSLNNEGRDLNEYRIRTFGLGEFLL-AFFTSSALGVXKPNPAXYRLGLTLAQ 85 (130) T ss_dssp SEEEEEECCCHHHHHHHHHHHTGGGTCS-CEEEHHHHSCCTTCHHHHHHHHHHHT T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 3699983450788999998750122222-11112233456617888999999819 No 353 >>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:585-763) Probab=29.65 E-value=27 Score=13.27 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=51.2 Q ss_pred HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC----CCEE Q ss_conf 059758999721001111036799999999741003576777589995168884442200769999999748----9048 Q gi|254780791|r 168 CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANS----SIPI 243 (529) Q Consensus 168 ~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~----~iPV 243 (529) ++.+++++..++.| .+++++.++..- ++|+|.|.=--++ .|-+.-+-..+++.+-+. .++| T Consensus 47 ~~~G~~V~~LG~~~----p~e~l~~~~~~~----------~~diV~lS~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~v 111 (179) T 3kp1_A 47 EKYGVEVHYLGTSV----PVEKLVDAAIEL----------KADAILASTIISH-DDIHYKNMKRIHELAVEKGIRDKIMI 111 (179) T ss_dssp GGGTCEEEECCSSB----CHHHHHHHHHHT----------TCSEEEEECCCCG-GGHHHHHHHHHHHHHHHTTCTTTSEE T ss_pred HHCCEEEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEHHHHH-HHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 54464899548658----989999999976----------9999997522132-44598889999999996288888699 Q ss_pred EEEECCCCCCHHHHHHHCCCCCCCHHHHHHH Q ss_conf 8520577752589886412377721456763 Q gi|254780791|r 244 ISAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529) Q Consensus 244 isgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529) +-|.....-..+..+=+|.=+...+.+.+.+ T Consensus 112 ~~GG~~~~~~~~~~~G~d~~~~~~~~~~~~~ 142 (179) T 3kp1_A 112 GCGGTQVTPEVAVKQGVDAGFGRGSKGIHVA 142 (179) T ss_dssp EEECTTCCHHHHHTTTCSEEECTTCCHHHHH T ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCHHHHH T ss_conf 9689877889999739560018989778999 No 354 >>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} (A:20-281) Probab=29.57 E-value=27 Score=13.26 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=41.5 Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH Q ss_conf 84784258999999863059758999721001111036799999999741003576777589995168884442200769 Q gi|254780791|r 151 ITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE 230 (529) Q Consensus 151 its~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e 230 (529) +++.+-....+....+....+..+.++.+-+--+++..+.+..+... ...+|++|-.-|++...+++...++ T Consensus 36 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~g~idilinnAg~~~~~~~~~~~~~ 107 (262) T 1w6u_A 36 IASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV--------AGHPNIVINNAAGNFISPTERLSPN 107 (262) T ss_dssp EEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH--------TCSCSEEEECCCCCCCSCGGGCCHH T ss_pred EEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCCCCCCCCCH T ss_conf 99798889999999998851994899978889999999987557886--------2980698630234544543221200 Q ss_pred HHHHHHH Q ss_conf 9999997 Q gi|254780791|r 231 MIVRAIA 237 (529) Q Consensus 231 ~laraI~ 237 (529) +.-+.+. T Consensus 108 ~~~~~~~ 114 (262) T 1w6u_A 108 AWKTITD 114 (262) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 5777766 No 355 >>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* (A:) Probab=29.43 E-value=27 Score=13.24 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=61.0 Q ss_pred CCCCCCEEEEEECCCHHHHHHHH-----HHHHHCCCE--EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE Q ss_conf 10265289998478425899999-----986305975--89997210011110367999999997410035767775899 Q gi|254780791|r 141 IPFIPKIIAVITSPTGAVIRDIL-----QRISCRFPL--RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII 213 (529) Q Consensus 141 lP~~p~~i~vits~~~a~~~D~~-----~~~~~r~p~--~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii 213 (529) +..-+.|||||.|.=-.-+-|=+ .++.+ +.+ .++-.|-.. ||--+++.+-+..+ ....+||.|| T Consensus 8 ~~~~~~riaIV~s~fn~~i~~~l~~ga~~~l~~-~g~~i~v~~VPGa~-------EiP~a~~~l~~~~~-~~~~~yDavi 78 (157) T 2i0f_A 8 HEADAPHLLIVEARFYDDLADALLDGAKAALDE-AGATYDVVTVPGAL-------EIPATISFALDGAD-NGGTEYDGFV 78 (157) T ss_dssp ---CCCEEEEEEECSSHHHHHHHHHHHHHHHHH-TTCEEEEEEESSGG-------GHHHHHHHHHHHHH-TTCCCCSEEE T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH-CCCCEEEEECCCHH-------HHHHHHHHHHHHHH-CCCCCCCEEE T ss_conf 668999899997848789999999999999998-69958999804265-------57999999998624-0256666699 Q ss_pred ----EECCCCCHHHHHHCC-HHHHHHHHHHCCCEEEEEECCCCC Q ss_conf ----951688844422007-699999997489048852057775 Q gi|254780791|r 214 ----LARGGGSIEDLWHFN-DEMIVRAIANSSIPIISAIGHETD 252 (529) Q Consensus 214 ----i~RGGGS~eDL~~FN-~e~laraI~~~~iPVisgIGHE~D 252 (529) |+||+=.--|..|=. ...|.+.=.+..+||+.||=+.-. T Consensus 79 aLG~VIrGeT~H~e~v~~~v~~gl~~v~l~~~~PV~~gvLt~~~ 122 (157) T 2i0f_A 79 ALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVEN 122 (157) T ss_dssp EEEEEECCSSSTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESS T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 88778724640577999999999999875259618988713798 No 356 >>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str} (A:1-43,A:144-241) Probab=29.28 E-value=27 Score=13.22 Aligned_cols=36 Identities=11% Similarity=0.255 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHCCHHHHHCCCEEEEECCCCCEECCHHHC Q ss_conf 999999988716967773146199984898895777892 Q gi|254780791|r 441 SVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNL 479 (529) Q Consensus 441 rL~~l~~~L~slsP~~~L~RGYaiv~~~~GkiI~s~~~l 479 (529) -++.+.+.|..+. .-+.||+.+.|.+|.+|-+...- T Consensus 43 ~Ld~l~~~L~~i~---~g~~Gy~fIiD~dG~IIaHpd~~ 78 (141) T 3c8c_A 43 PLAELAELVNEVK---LFDAGYVFIVSEDGTTIAHPKKE 78 (141) T ss_dssp CHHHHHHHHTCSC---CTTSEEEEEEETTSBEEECSSGG T ss_pred CCHHHCCCCCCCC---CCCCEEEEEEECCCCEEECCCHH T ss_conf 9001101121234---57644999995899599658858 No 357 >>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242) Probab=28.85 E-value=28 Score=13.16 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=56.3 Q ss_pred CCCEEEEEECCCHHHHHHHH----HHHHHCCC-EEEE-EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 65289998478425899999----98630597-5899-972100111103679999999974100357677758999516 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDIL----QRISCRFP-LRVI-IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~----~~~~~r~p-~~~~-~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) -..+|++|+.+....-.+-. ..+++..| +.+. .+++...-+.+.. ++..+-... +.+|+| T Consensus 18 g~~~i~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~-----~~~~ai----- 83 (134) T 3g1w_A 18 GEGEVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRR----VAHQLLEDY-----PNLAGI----- 83 (134) T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHH----HHHHHHHHC-----TTEEEE----- T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH----HHHHHHCCC-----CCCCEE----- T ss_conf 576199993124312899999999999875776631457516653588999----999874038-----998889----- Q ss_pred CCCHHHHHHCCHH---HHHHHHHHCCCE-EEEEECCCCCCHHHHHHHC Q ss_conf 8884442200769---999999748904-8852057775258988641 Q gi|254780791|r 218 GGSIEDLWHFNDE---MIVRAIANSSIP-IISAIGHETDWTLADYAAD 261 (529) Q Consensus 218 GGS~eDL~~FN~e---~laraI~~~~iP-VisgIGHE~D~Tl~D~VAD 261 (529) |++|+. .+++++.+..+| =|+-||..-+....+++.+ T Consensus 84 -------~~~~~~~a~g~~~al~~~g~~~di~i~g~d~~~~~~~~i~~ 124 (134) T 3g1w_A 84 -------FATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTLDLVDE 124 (134) T ss_dssp -------EESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHHHHHHT T ss_pred -------EECCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHC T ss_conf -------97774899999999997699998399997896999999985 No 358 >>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} (A:) Probab=28.85 E-value=28 Score=13.16 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=49.5 Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 63102652899984784258999999863059758999721001111036799999999741003576777589995168 Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) .+-|.-+.||+||--.++- .+.+.+.+.++. +.+.++|..- .+.+ ...+|.|||.=|+ T Consensus 7 ~~~~~~~m~vliid~g~~~-~~~i~~~l~~~g-~~~~v~~~~~----~~~~----------------~~~~dgiii~GG~ 64 (212) T 2a9v_A 7 HHHHHHXLKIYVVDNGGQW-THREWRVLRELG-VDTKIVPNDI----DSSE----------------LDGLDGLVLSGGA 64 (212) T ss_dssp ---CCCCCBEEEEEESCCT-TCHHHHHHHHTT-CBCCEEETTS----CGGG----------------GTTCSEEEEEEEC T ss_pred CCCCCCCCEEEEEECCCCH-HHHHHHHHHHCC-CEEEEEECCC----CHHH----------------HHCCCEEEEECCC T ss_conf 3250664579999997678-999999999789-8489996979----9999----------------8468907983576 Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 884442200769999999748904885 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVis 245 (529) ++..|-.. -.+.+.+.+....+||+- T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~PiLG 90 (212) T 2a9v_A 65 PNIDEELD-KLGSVGKYIDDHNYPILG 90 (212) T ss_dssp SCGGGTGG-GHHHHHHHHHHCCSCEEE T ss_pred CCCCCCCC-HHHHHHHHHHHCCCEEEE T ss_conf 55420332-124567776515832899 No 359 >>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A (A:1-212,A:297-323) Probab=28.83 E-value=28 Score=13.16 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=27.7 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 52899984784258999999863059758999 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVII 176 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~ 176 (529) ..+|-||.+|||+|-..+...|..++|.+++. T Consensus 4 ~~kiivI~GpTGsGKt~La~~La~~~~~~iis 35 (239) T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELIS 35 (239) T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEE T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE T ss_conf 99589998978417999999999987997994 No 360 >>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} (A:) Probab=28.82 E-value=28 Score=13.16 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=34.4 Q ss_pred HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 89999998630597-589997210011110367999999997410035767775899951688844 Q gi|254780791|r 158 VIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 158 ~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) .+..+...+++.++ ..++||.+..-|+..+. ...+|++|+..+.-+.. T Consensus 3 ~l~~i~~~~~~~~~~~~v~LFGS~ArG~~~~~-----------------~SDiDilVv~~~~~~~~ 51 (96) T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIG-----------------LSDIDVAIVSDVFEDRN 51 (96) T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSC-----------------CCSEEEEEECGGGGSHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCEECCCCCCC-----------------CCCCEEEEEECCCCCHH T ss_conf 89999999998689958999961883798789-----------------88427999977888878 No 361 >>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} (A:) Probab=28.80 E-value=28 Score=13.16 Aligned_cols=90 Identities=20% Similarity=0.184 Sum_probs=54.0 Q ss_pred CCCEEEEEECCCHHHHHHHHHHH-HHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 65289998478425899999986-305-9758999721001111036799999999741003576777589995168884 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRI-SCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~-~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) -+.+|-||-. ....+.+++.. ... +.+.+.... +-..|++.+... .||+||+- T Consensus 7 ~~~~vLiVDD--~~~~~~~l~~~L~~~~~~~~v~~a~----------~~~~al~~l~~~-------~pdliilD------ 61 (143) T 3cnb_A 7 NDFSILIIED--DKEFADMLTQFLENLFPYAKIKIAY----------NPFDAGDLLHTV-------KPDVVMLD------ 61 (143) T ss_dssp --CEEEEECS--CHHHHHHHHHHHHHHCTTCEEEEEC----------SHHHHHHHHHHT-------CCSEEEEE------ T ss_pred CCCEEEEEEC--CHHHHHHHHHHHHHCCCCEEEEEEC----------CHHHHHHHHHHC-------CCCEEEEE------ T ss_conf 9998999959--9999999999998478981999989----------999999999845-------89899982------ Q ss_pred HHHHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHHHH Q ss_conf 44220076999999974----89048852057775258988 Q gi|254780791|r 222 EDLWHFNDEMIVRAIAN----SSIPIISAIGHETDWTLADY 258 (529) Q Consensus 222 eDL~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~D~ 258 (529) -+|=-.|-.++++.|.+ +.+|||-=.|+..+...... T Consensus 62 ~~mp~~dG~~l~~~ir~~~~~~~~pvI~lt~~~~~~~~~~~ 102 (143) T 3cnb_A 62 LMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRI 102 (143) T ss_dssp TTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH T ss_conf 36689808999999985677899879997068999999999 No 362 >>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} (A:) Probab=28.76 E-value=28 Score=13.15 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=61.3 Q ss_pred CCCCEEEEEECCCHHH-----HHHHHHHHHHC--CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE- Q ss_conf 2652899984784258-----99999986305--97-589997210011110367999999997410035767775899- Q gi|254780791|r 143 FIPKIIAVITSPTGAV-----IRDILQRISCR--FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII- 213 (529) Q Consensus 143 ~~p~~i~vits~~~a~-----~~D~~~~~~~r--~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii- 213 (529) .-+.|||||.|.=-.- +...+..+.++ .+ -.|.++.++ | +-||--+++++-+.+ +||.|| T Consensus 15 ~~~~riaIV~s~fn~~i~~~l~~ga~~~l~~~~~~~~~~i~~~~VP--G---a~EiP~a~~~l~~~~------~~DaiIa 83 (159) T 1kz1_A 15 GPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVP--G---SWELPQGIRASIARN------TYDAVIG 83 (159) T ss_dssp CTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECS--S---GGGHHHHHHHHHHHS------CCSEEEE T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECC--C---HHHHHHHHHHHHCCC------CCCEEEE T ss_conf 8899899997218789999999999999999669995345899859--6---889999999986037------8786999 Q ss_pred ---EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC Q ss_conf ---95168884442200-7699999997489048852057775258988641237772 Q gi|254780791|r 214 ---LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267 (529) Q Consensus 214 ---i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP 267 (529) |+||+=.--|..|= =...|.+.=....+||+.||= ++-.+.=|.-|+-+- T Consensus 84 LG~VIrGeT~H~~~i~~~vs~gl~~v~l~~~~PV~~Gil----T~~~~eQA~~R~~~~ 137 (159) T 1kz1_A 84 IGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLL----TVLNEEQALYRAGLN 137 (159) T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEE----EESSHHHHHHHBTCT T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHHHHHCCCC T ss_conf 888853888278999999999999998444998799863----779999999880786 No 363 >>1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} (A:) Probab=28.62 E-value=28 Score=13.13 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=63.5 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEE-CCCCCHHHHHHCCHHHHHHH Q ss_conf 89999998630597589997210011110367999999997410035767775-89995-16888444220076999999 Q gi|254780791|r 158 VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPD-IIILA-RGGGSIEDLWHFNDEMIVRA 235 (529) Q Consensus 158 ~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D-~iii~-RGGGS~eDL~~FN~e~lara 235 (529) ++=||..++..... +|....-+......++..|..+..... .+ +++.+ =.||+.. .-..+..+ T Consensus 71 avi~i~g~i~~~~~----~~~~~~~~~~~~~~i~~~l~~~~~~~~------~~~I~l~InSpGG~v~-----~~~~i~~~ 135 (277) T 1tg6_A 71 RAYDIYSRLLRERI----VCVMGPIDDSVASLVIAQLLFLQSESN------KKPIHMYINSPGGVVT-----AGLAIYDT 135 (277) T ss_dssp --CBHHHHHHTTTE----EEEESSBCHHHHHHHHHHHHHHHHHCS------SSCEEEEEEECCBCHH-----HHHHHHHH T ss_pred EEHHHHHHHHCCCE----EEECCEECHHHHHHHHHHHHHHHCCCC------CCCEEEEECCCCCCHH-----HHHHHHHH T ss_conf 20127678762788----988988868999999999999864598------7627999569998475-----79999999 Q ss_pred HHHCCCEEEEEECCC--CCCHHHHHHHCCCCCCCHHH Q ss_conf 974890488520577--75258988641237772145 Q gi|254780791|r 236 IANSSIPIISAIGHE--TDWTLADYAADLRAPTPTGA 270 (529) Q Consensus 236 I~~~~iPVisgIGHE--~D~Tl~D~VAD~Ra~TPTaA 270 (529) |..++.||++-|... ---+++=.++|.+..+|++- T Consensus 136 i~~~~~pv~~~~~g~aaS~g~~ia~a~d~~~~~~~~~ 172 (277) T 1tg6_A 136 MQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPN 172 (277) T ss_dssp HHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT T ss_pred HHHCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCC T ss_conf 9727898508998350687899998066687743876 No 364 >>2o2z_A Hypothetical protein; NP_244435.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A (A:) Probab=28.42 E-value=28 Score=13.10 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=67.1 Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC Q ss_conf 6310265289998478425899999986305975-899972100111103679999999974100357677758999516 Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529) Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529) .|.-.-|-.+.+.|..+.-..+.. .+-....|+ ++.+.|..+ .|....++||+. -|+||++=| T Consensus 124 lP~t~~~~~l~a~~~dG~~~~ge~-~I~~~~~~I~rv~~~~~~~---~a~p~al~AI~~------------AD~IV~gPG 187 (323) T 2o2z_A 124 LPASNRSIILHGEXEDGTIVTGES-SIPKAGKKIKRVFLTPKDT---KPLREGLEAIRK------------ADVIVIGPG 187 (323) T ss_dssp EESCSSCCEEEEEETTSCEEESTT-TGGGGCSCEEEEEEESTTC---CCCHHHHHHHHH------------CSEEEECSS T ss_pred EECCCCCEEEEEEECCCCCCCCEE-HHHCCCCCEEEEECCCCCC---CCCHHHHHHHHH------------CCCEEECCC T ss_conf 956898469999978997347612-2331666417885246667---799789999981------------893798475 Q ss_pred CCCHHHHHHCCHHHHHHHHHHCCCEE--EEEECC---C-CCCHHHHHHH Q ss_conf 88844422007699999997489048--852057---7-7525898864 Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAIANSSIPI--ISAIGH---E-TDWTLADYAA 260 (529) Q Consensus 218 GGS~eDL~~FN~e~laraI~~~~iPV--isgIGH---E-~D~Tl~D~VA 260 (529) -==..=+=.+-=..++.||.+++-|+ |+=|+- | ..+|.+|+|. T Consensus 188 SlyTSIiP~Llv~gI~eAI~~s~a~kV~V~Nl~tq~GET~g~t~~d~V~ 236 (323) T 2o2z_A 188 SLYTSVLPNLLVPGICEAIKQSTARKVYICNVXTQNGETDGYTASDHLQ 236 (323) T ss_dssp CTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCHHHHHH T ss_conf 2787751461218799998637997799966888854441767799999 No 365 >>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} (A:1-257) Probab=28.29 E-value=28 Score=13.09 Aligned_cols=86 Identities=16% Similarity=0.053 Sum_probs=42.3 Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-----------------------EEEEEEECCCCCCCHHHHHHHH Q ss_conf 01631026528999847842589999998630597-----------------------5899972100111103679999 Q gi|254780791|r 137 HKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-----------------------LRVIIFPVKVQGDECPKEIANA 193 (529) Q Consensus 137 ~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-----------------------~~~~~~p~~vQG~~a~~~i~~a 193 (529) ..++.+.+-.|++|||..++--=.-+.+.+.+.-. ..+..+.+-|--.+...+.+.. T Consensus 22 ~~~~~~~l~gk~~lITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 101 (257) T 1yb1_A 22 MPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKK 101 (257) T ss_dssp ---CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHH T ss_conf 99999999998899928766999999999998799899998999999999999884299489999517998999999999 Q ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH Q ss_conf 9999741003576777589995168884442200769 Q gi|254780791|r 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE 230 (529) Q Consensus 194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e 230 (529) +... ...+|++|..=|++...++..+.++ T Consensus 102 ~~~~--------~g~~d~lv~nag~~~~~~~~~~~~~ 130 (257) T 1yb1_A 102 VKAE--------IGDVSILVNNAGVVYTSDLFATQDP 130 (257) T ss_dssp HHHH--------TCCCSEEEECCCCCCCCCCGGGHHH T ss_pred HHHH--------CCCCCEEEEECCCCCCCCCCCCCHH T ss_conf 9986--------4996189961444665433557568 No 366 >>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99) Probab=28.08 E-value=29 Score=13.06 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=47.4 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHH Q ss_conf 42589999998630597589997210011110367999999997410035767775899951688844422007699999 Q gi|254780791|r 155 TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVR 234 (529) Q Consensus 155 ~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lar 234 (529) +...+..++...-..+.+.+.... +..+|+..+... .||+||+-.+ |-.++++ T Consensus 8 Dd~~~~~~i~~~L~~~g~~v~~a~----------~~~~a~~~~~~~-------~~dlviLp~~----------~G~~ll~ 60 (99) T 2hqr_A 8 KNSVLGGEIEKGLNVKGFMADVTE----------SLEDGEYLMDIR-------NYDLVMVSDK----------NALSFVS 60 (99) T ss_dssp SCHHHHHHHHHHHGGGTCCEEEES----------SHHHHHHHHTTS-------CCSEEEECCT----------THHHHHH T ss_pred CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCHHHCCCC----------CCCCCCC T ss_conf 799999999999998799999989----------999999999736-------9861102223----------3211112 Q ss_pred HHH--HCCCEEEEEECCCCCCHHH Q ss_conf 997--4890488520577752589 Q gi|254780791|r 235 AIA--NSSIPIISAIGHETDWTLA 256 (529) Q Consensus 235 aI~--~~~iPVisgIGHE~D~Tl~ 256 (529) .+= ...+|||---||....+.. T Consensus 61 ~lr~~~~~~pvI~lt~~~~~~~~~ 84 (99) T 2hqr_A 61 RIKEKHSSIVVLVSSDNPTSEEEV 84 (99) T ss_dssp HHHHHCTTSEEEEEESSCCHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 222222222221233211212222 No 367 >>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:1-143) Probab=27.94 E-value=29 Score=13.04 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=52.0 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) .++|-||-. -..+.+++..+-+.|++++.... +--.|+..+... .||+||+ =-+| T Consensus 4 ~~~ILiVDD--~~~~~~~i~~~l~~~g~~v~~a~----------~~~~al~~l~~~-------~~d~iil------D~~l 58 (143) T 1yio_A 4 KPTVFVVDD--DMSVREGLRNLLRSAGFEVETFD----------CASTFLEHRRPE-------QHGCLVL------DMRM 58 (143) T ss_dssp CCEEEEECS--CHHHHHHHHHHHHTTTCEEEEES----------SHHHHHHHCCTT-------SCEEEEE------ESCC T ss_pred CCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCEEEEE------ECCC T ss_conf 997999969--99999999999997799999978----------999999998845-------9869997------2454 Q ss_pred HHCCHHHHHHHHHHC--CCEEE--EEECCCCC Q ss_conf 200769999999748--90488--52057775 Q gi|254780791|r 225 WHFNDEMIVRAIANS--SIPII--SAIGHETD 252 (529) Q Consensus 225 ~~FN~e~laraI~~~--~iPVi--sgIGHE~D 252 (529) -.+|-.++++.|.+. .+||| ||-|-+.+ T Consensus 59 p~~~G~el~~~ir~~~~~~pvI~~t~~~~~~~ 90 (143) T 1yio_A 59 PGMSGIELQEQLTAISDGIPIVFITAHGDIPM 90 (143) T ss_dssp SSSCHHHHHHHHHHTTCCCCEEEEESCTTSCC T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEEECCHHH T ss_conf 68788530057788733573799986287999 No 368 >>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236) Probab=27.89 E-value=29 Score=13.03 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=19.6 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHH Q ss_conf 8425899999986305975899972100-1111036799999 Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAI 194 (529) Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai 194 (529) ++-..+-++.+.+.+.-++.+++|..+. -|.....+....+ T Consensus 109 ~~~~~i~~~~~~ia~a~~~piiiy~~P~~~g~~~~~~~l~~l 150 (236) T 2vc6_A 109 PTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARI 150 (236) T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHH T ss_conf 999999999998601456438999502233543539999987 No 369 >>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355) Probab=27.87 E-value=29 Score=13.03 Aligned_cols=109 Identities=16% Similarity=0.234 Sum_probs=67.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCC-CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf 999999976540122610016310265-28999847-842589999998630---5975899972100111103679999 Q gi|254780791|r 119 ALEKRKKKLLEEGLFSDQHKNPIPFIP-KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANA 193 (529) Q Consensus 119 ~~e~lk~~L~~eGlfd~~~k~~lP~~p-~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~a 193 (529) ..++..+-.++-||.-....+.+..-. ..||++.+ .+..-+.+++.-+.+ ..++.+.++.+.- .+..-..+ T Consensus 43 Tr~rVl~aA~elGY~pn~~a~~l~~~~s~~i~~i~~~~~~~f~~~ii~gi~~~a~~~G~~v~i~~~~~----d~e~e~~~ 118 (221) T 3e3m_A 43 TRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAY----SPEREEQL 118 (221) T ss_dssp ----------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTT----CHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCHHHHHHHHCCCCCCCCCCCC----CCHHHHHH T ss_conf 99999999999699538878876228774588735765555210100024555541387421232345----53014689 Q ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 999974100357677758999516888444220076999999974890488520 Q gi|254780791|r 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI 247 (529) ++.+... .+|.||+.=.. .+...++...+..||||.-= T Consensus 119 l~~l~~~-------~vdGIIi~~~~---------~~~~~i~~L~~~gIPvV~id 156 (221) T 3e3m_A 119 VETMLRR-------RPEAMVLSYDG---------HTEQTIRLLQRASIPIVEIW 156 (221) T ss_dssp HHHHHHT-------CCSEEEEECSC---------CCHHHHHHHHHCCSCEEEES T ss_pred HHHHHHH-------CCCCCCCCCCC---------CCHHHHHHHHHCCCCCEEEC T ss_conf 9999852-------23322223465---------41346677653158740322 No 370 >>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364) Probab=27.82 E-value=29 Score=13.02 Aligned_cols=98 Identities=9% Similarity=-0.001 Sum_probs=51.8 Q ss_pred CCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 2652899984784258--99999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 143 FIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 143 ~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) .-.++|++|.+.+.-+ ..|..+..-++...++.-.-..-.|......++..|+.. ++|+|+++=-|. T Consensus 17 ~g~~~Vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~----------~pdvIv~~~~~~- 85 (162) T 3lop_A 17 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAXASYPRNTANVGPAVDKLLAA----------DVQAIFLGATAE- 85 (162) T ss_dssp TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHS----------CCSEEEEESCHH- T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHC----------CCCEEEEECCHH- T ss_conf 199889999836832699999999999976988999998379885368999999857----------989999968789- Q ss_pred HHHHHHCCHHHHHHHHHHCC--CEEEEEECCCCCCHHHHH Q ss_conf 44422007699999997489--048852057775258988 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSS--IPIISAIGHETDWTLADY 258 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~--iPVisgIGHE~D~Tl~D~ 258 (529) | -..+.++..+.. -|++..-|--.+..+-.. T Consensus 86 --~-----~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 118 (162) T 3lop_A 86 --P-----AAQFVRQYRARGGEAQLLGLSSIDPGILQKVA 118 (162) T ss_dssp --H-----HHHHHHHHHHTTCCCEEEECTTSCHHHHHHHH T ss_pred --H-----HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH T ss_conf --9-----99999999983899769997578869999874 No 371 >>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} (A:1-164) Probab=27.80 E-value=21 Score=14.18 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=10.5 Q ss_pred CCCCEECCHHHCCCCCEEEEEEECE Q ss_conf 8988957778929998699999110 Q gi|254780791|r 468 TNNNFITQKRNLATKTRILINFFDG 492 (529) Q Consensus 468 ~~GkiI~s~~~l~~gd~i~i~l~DG 492 (529) .+|.+++...-+...+.+.++|.|| T Consensus 39 ~~G~ilT~~Hvv~~~~~i~v~~~~g 63 (164) T 3fan_A 39 GKIKCVTAAHVLTGNSARVSGVGFN 63 (164) T ss_dssp TEEEEEEEGGGSBTTEEEEEETTEE T ss_pred CCEEEEECHHHHCCCCEEEEEECCC T ss_conf 9808997037228897799991699 No 372 >>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} (A:1-109) Probab=27.64 E-value=29 Score=13.00 Aligned_cols=47 Identities=28% Similarity=0.516 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH--HCCHHHHHHHHHH---CCCEEE--EEECCC Q ss_conf 7999999997410035767775899951688844422--0076999999974---890488--520577 Q gi|254780791|r 189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW--HFNDEMIVRAIAN---SSIPII--SAIGHE 250 (529) Q Consensus 189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~--~FN~e~laraI~~---~~iPVi--sgIGHE 250 (529) +-.+|++.+... .||+|++ |+. ..|-.++++.+-+ .++||| |+-|++ T Consensus 36 ~g~eal~~~~~~-------~~dlill--------D~~mP~~dG~e~~~~lr~~~~~~~~ii~lt~~~~~ 89 (109) T 1dz3_A 36 NGQDCLQMLEEK-------RPDILLL--------DIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQE 89 (109) T ss_dssp SHHHHHHHHHHH-------CCSEEEE--------ESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCH T ss_pred CHHHHHHHHHHC-------CCCEEEE--------ECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCH T ss_conf 999999999826-------9999999--------55789998999999998469999959999764999 No 373 >>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:) Probab=27.63 E-value=29 Score=13.00 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=51.1 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH Q ss_conf 78425899999986305975899972100-11110367999999997410035767775899951688844422007699 Q gi|254780791|r 153 SPTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM 231 (529) Q Consensus 153 s~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529) .++-.++-++...+.+..|+.+++|..+. -|-.=+.+.+..|.. .+.++-+--++|..+. T Consensus 109 ~~s~~~i~~~~~~ia~a~~~piiiYn~P~~~g~~~s~~~l~~l~~-----------~~~ivg~K~~~~~~~~-------- 169 (291) T 3bi8_A 109 KTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE-----------DKNIVAVKEASGNISQ-------- 169 (291) T ss_dssp CCCHHHHHHHHHHHHHTCCSCEEEEECHHHHSCCCCHHHHHHHTT-----------SSSEEEEEECSCCHHH-------- T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHC-----------CCCEEEEEECCCCHHH-------- T ss_conf 899999999999998336998899978763587666566577760-----------8996566358899999-------- Q ss_pred HHHHHHHCC--CEEEEEECC Q ss_conf 999997489--048852057 Q gi|254780791|r 232 IVRAIANSS--IPIISAIGH 249 (529) Q Consensus 232 laraI~~~~--iPVisgIGH 249 (529) +.+.+..++ +-|++|.++ T Consensus 170 ~~~~~~~~~~~~~~~~g~d~ 189 (291) T 3bi8_A 170 IAQIKALCGDKLDIYSGNDD 189 (291) T ss_dssp HHHHHHHHGGGCEEEESCGG T ss_pred HHHHHHHCCCCEEEECCCHH T ss_conf 99999974998378078378 No 374 >>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* (A:1-167) Probab=27.54 E-value=29 Score=12.99 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=57.1 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCC---CEEEE-EEECCCCCCCHHHHHHHHHHHH------HHHCC--CCCCCCCC Q ss_conf 2652899984784258999999863059---75899-9721001111036799999999------74100--35767775 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRF---PLRVI-IFPVKVQGDECPKEIANAILQL------NTLKE--GRTCPRPD 210 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~---p~~~~-~~p~~vQG~~a~~~i~~ai~~~------~~~~~--~~~~~~~D 210 (529) .-+.+|-+|+++-|+|---.+..+..++ ..++. +.|. .--..-...|...+..- +...+ .....++| T Consensus 25 ~~~~~l~~i~G~mgsGKTt~L~~~~~~~~~~~~kv~ii~p~-~d~r~~~~~I~s~~g~~~~a~~~~~~~~i~~~~~~~~d 103 (167) T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-IDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMD 103 (167) T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCCSSCC T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHCCCCCCEEECCCCEEEEEEECCCCCCCCCCCCCEE T ss_conf 58837999990507889999999999999879909998041-66236886479058977267872265321001254200 Q ss_pred EEEEECCCCCHHHHHHC---CHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 89995168884442200---76999999974890488520577752 Q gi|254780791|r 211 IIILARGGGSIEDLWHF---NDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 211 ~iii~RGGGS~eDL~~F---N~e~laraI~~~~iPVisgIGHE~D~ 253 (529) +|+| |=..| +-.+.+|.+.+..+|||.+ |..+|+ T Consensus 104 vi~I--------DEaQFl~~~~ie~~~~l~~~~~~Vi~a-gL~~d~ 140 (167) T 2j9r_A 104 VIAI--------DEVQFFDGDIVEVVQVLANRGYRVIVA-GLDQDF 140 (167) T ss_dssp EEEE--------CCGGGSCTTHHHHHHHHHHTTCEEEEE-ECSBCT T ss_pred EEEE--------ECCCCCCHHHHHHHHHHHHCCCCEEEE-EEEEEE T ss_conf 9998--------341114224899999998447744899-777204 No 375 >>3b9e_A Chitinase A; TIM-barrel, glycosidase, hydrolase; 1.70A {Vibrio harveyi} PDB: 3b9a_A* 3b9d_A 3b8s_A (A:1-125) Probab=27.53 E-value=29 Score=12.98 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=32.3 Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEEEEE-------EE-ECCCCEEEEEEEEEEECCC Q ss_conf 799999735210586681459889999996-------67-5288437999997101680 Q gi|254780791|r 63 RIDAIIWKGTLNKIEFLPEEGIEFLVIGKI-------TT-FPGSSKYQIIIESLIPSGS 113 (529) Q Consensus 63 ~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~-------~~-y~~~g~~ql~v~~i~~~g~ 113 (529) .|+-.+|.+..... .++-...+++..|.+ +| |.+.|+|++.|+-++..|- T Consensus 43 ~VswnvWsG~~g~~-~~l~~ng~~V~tg~~t~~~~~a~~~~~~~G~y~~~V~lcn~~Gc 100 (125) T 3b9e_A 43 KVKFNQWSGTSGDT-YNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGC 100 (125) T ss_dssp EEEEECCSSCCCSE-EEEEETTEEEEEEECCTTEEEEEEEECCCEEEEEEEEEECSSCE T ss_pred EEEEEEECCCCCCE-EEEEECCEEEEECCCCCCCEEEEEECCCCCEEEEEEEEECCCCC T ss_conf 24774213888846-99998877887313367624898723789569999999879997 No 376 >>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} (A:1-8,A:121-263) Probab=27.51 E-value=29 Score=12.98 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=35.7 Q ss_pred CCCCCCCCCEEEEEECC--CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 16310265289998478--4258999999863059758999721001111036799999999741003576777589995 Q gi|254780791|r 138 KNPIPFIPKIIAVITSP--TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 138 k~~lP~~p~~i~vits~--~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) ..-+|.-=+++.||--. =|..+.-.++.-. ..+.+++..- ..+.++++. -|+||.+ T Consensus 42 ~~~~~l~Gk~vvViG~s~~VG~pla~lL~~~g----a~Vtv~~~~t------~~l~e~~~~------------ADIVVsA 99 (151) T 3l07_A 42 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAK----ATVTTCHRFT------TDLKSHTTK------------ADILIVA 99 (151) T ss_dssp HTTCCCTTCEEEEECCCTTTHHHHHHHHHHTT----CEEEEECTTC------SSHHHHHTT------------CSEEEEC T ss_pred HHCCCCCCCEEEEECCCCCCCHHHHHHHHCCC----CEEEEEECCC------CCHHHHHHH------------CCHHHHH T ss_conf 95998679779998898756558999985589----7499983589------998998650------------6766663 Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 16888444220076999999974890488520577752 Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529) =|.--+-+.-.+-+ =-++--|||..+. T Consensus 100 tG~~~~i~~~~ik~-----------GaividvG~~~~~ 126 (151) T 3l07_A 100 VGKPNFITADMVKE-----------GAVVIDVGINHVD 126 (151) T ss_dssp CCCTTCBCGGGSCT-----------TCEEEECCCEEET T ss_pred CCCCCCCCCCCCCC-----------CCEEEEECCCCCC T ss_conf 38977664333689-----------9789992562568 No 377 >>1vr5_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; TM1223, structural genomics; HET: EPE; 1.73A {Thermotoga maritima MSB8} (A:258-504) Probab=27.42 E-value=29 Score=12.97 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=80.3 Q ss_pred HHHHHHHHHHHHCCCCCCC---CCCCCCCCEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf 9999997654012261001---631026528999847842589999998630---5975899972100111103679999 Q gi|254780791|r 120 LEKRKKKLLEEGLFSDQHK---NPIPFIPKIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANA 193 (529) Q Consensus 120 ~e~lk~~L~~eGlfd~~~k---~~lP~~p~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~a 193 (529) .++-++-|++.|+=+.... ..-...+..+-+++........++...++. ..++++.+-+... ...... T Consensus 81 ~~~A~~ll~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~Gi~v~~~~~~~------~~~~~~ 154 (247) T 1vr5_A 81 PEXAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWXVSIQSIAEDLVKVGINVEPKYPDY------SKYADD 154 (247) T ss_dssp HHHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECCCH------HHHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCH------HHHHHH T ss_conf 79999989973986458776401477666421323688862678999999999764020033222211------244443 Q ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHH Q ss_conf 999974100357677758999516888444220076999999974890488520577752589886412377721456 Q gi|254780791|r 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAA 271 (529) Q Consensus 194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAA 271 (529) ... .++|+.+.+-+|.+..|-+.|=.......-....-+.-.--|+-.|..+-.++...++.|-.+.. T Consensus 155 ---~~~-------g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~d~ll~~~~~~~d~~~r 222 (247) T 1vr5_A 155 ---LYG-------GKFDLILNNFTTGVSATIWSYFNGVFYPDAVESEYSYSGNFGKYANPEVETLLDELNRSNDDAKI 222 (247) T ss_dssp ---HHH-------TCCSEEEECSSCBCCSCHHHHHHHHHCGGGGTSSSCSSSCTTCCCCHHHHHHHHHHHTCCCHHHH T ss_pred ---HHC-------CCCCHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH T ss_conf ---321-------21013320555788887677765421654211367888765665989999999998715999999 No 378 >>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} (A:1-183,A:295-339) Probab=27.32 E-value=29 Score=12.96 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.8 Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEE Q ss_conf 2652899984784258999999863059758999 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVII 176 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~ 176 (529) .-+.+|-||.+|+|+|-..+.+.|.++++.+++. T Consensus 37 ~~~~~iIvI~GpSGSGKStLa~~La~~l~~~ii~ 70 (228) T 3a8t_A 37 HRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (228) T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEE T ss_conf 5788679998988538999999999987997995 No 379 >>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H} (A:) Probab=27.21 E-value=22 Score=13.98 Aligned_cols=79 Identities=25% Similarity=0.311 Sum_probs=45.2 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH-- Q ss_conf 899984784258999999863059758999721001111036799999999741003576777589995168884442-- Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL-- 224 (529) Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL-- 224 (529) ||-|| .+....+.+++.+-++|.+.+..+ -|.. |+..+.. ..||+||+ |+ T Consensus 5 kvLiV--DD~~~~r~~l~~~l~~~~~~v~a~----~~~e-------a~~~~~~-------~~~dlvil--------D~~m 56 (135) T 3eqz_A 5 RVFIV--DDDTLTCNLLKTIVEPIFGNVEAF----QHPR-------AFLTLSL-------NKQDIIIL--------DLMM 56 (135) T ss_dssp EEEEE--CSCHHHHHHHHHHHTTTCSCEEEE----SCHH-------HHTTSCC-------CTTEEEEE--------ECCT T ss_pred EEEEE--ECCHHHHHHHHHHHHHCCCEEEEE----CCHH-------HHHHHHH-------CCCCEEEE--------EEEC T ss_conf 89999--489999999999999789989993----7999-------9999982-------68880687--------7637 Q ss_pred HHCCHHHHHHHHHH----CCCEEEEEECCCCCC Q ss_conf 20076999999974----890488520577752 Q gi|254780791|r 225 WHFNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529) Q Consensus 225 ~~FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529) =--|-.++++.|.+ .|++++||.+..... T Consensus 57 P~~dG~e~~~~ir~~~~~~~iii~s~~~~~~~~ 89 (135) T 3eqz_A 57 PDMDGIEVIRHLAEHKSPASLILISGYDSGVLH 89 (135) T ss_dssp TTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHH T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCC T ss_conf 999999999999960988968999835765450 No 380 >>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} (A:) Probab=27.08 E-value=30 Score=12.92 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=37.7 Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 77758999516888444220076999999974890488520577752589886 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ..+|++|| +.+-++...++.-..+.||||+=+--..|.+++||+ T Consensus 150 ~~P~liii---------~d~~~~~~ai~Ea~kl~IPvI~ivDTn~~p~~idyp 193 (253) T 3bch_A 150 REPRLLVV---------TDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA 193 (253) T ss_dssp CSCSEEEE---------SCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE T ss_pred CCCCCEEE---------ECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE T ss_conf 46660145---------556775077777765389889994478885558767 No 381 >>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} (A:) Probab=26.79 E-value=30 Score=12.88 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=25.8 Q ss_pred HHHHHHHHHCCCE-EEEEEECCCCCCCHH--HHHHHH-HHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 9999986305975-899972100111103--679999-9999741003576777589995168884442 Q gi|254780791|r 160 RDILQRISCRFPL-RVIIFPVKVQGDECP--KEIANA-ILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 160 ~D~~~~~~~r~p~-~~~~~p~~vQG~~a~--~~i~~a-i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) .+.-+.|+.+|++ ++++.|+.+.+.... ..+.+. .+.++..- ..-+++.++=||+.+..+ T Consensus 10 ~~le~~L~~~f~l~~~~vv~~~~~~~~~~~~~~va~~aa~~l~~~l-----~~~~~i~i~~ggt~~~~~ 73 (264) T 2r5f_A 10 LELETRLQKXYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSL-----SAQDHIGISSWSSTIRAX 73 (264) T ss_dssp HHHHHHHHHHHTCSEEEEECCSSTTCHHHHHHHHHHHHHHHHHHHC-----CTTCEEEECTTCHHHHHH T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-----CCCCEEEEECCCHHHHHH T ss_conf 9999999998199989996799999758999999999999999866-----659879997585799999 No 382 >>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} (A:) Probab=26.72 E-value=30 Score=12.87 Aligned_cols=80 Identities=6% Similarity=0.021 Sum_probs=50.7 Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH Q ss_conf 98478425899999986305975899972100111103679999999974100357677758999516888444220076 Q gi|254780791|r 150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND 229 (529) Q Consensus 150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~ 229 (529) |+++.+-....+....+....+-.+..+++-|-=+++...+++.+.... ..+|++|-.-|.+-..+++..++ T Consensus 49 v~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~--------g~iDilvnnAg~~~~~~~~~~~~ 120 (274) T 1ja9_A 49 VVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF--------GGLDFVMSNSGMEVWCDELEVTQ 120 (274) T ss_dssp EEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH--------SCEEEEECCCCCCCCCCGGGCCH T ss_pred EEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH--------CCCEEEEECCCCCCCCCHHHCCH T ss_conf 9971898689999999999729958999824899999999999999983--------99609995663356788265999 Q ss_pred HHHHHHHH Q ss_conf 99999997 Q gi|254780791|r 230 EMIVRAIA 237 (529) Q Consensus 230 e~laraI~ 237 (529) +..-+.+. T Consensus 121 ~~~~~~~~ 128 (274) T 1ja9_A 121 ELFDKVFN 128 (274) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999873 No 383 >>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} (A:1-114,A:252-303) Probab=26.69 E-value=30 Score=12.87 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=52.8 Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 28999847-842589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) ..||||.+ .+.-.+.+|+.-+.+ ...+.++++.+.-. ......+++.+... .+|.|||+-... T Consensus 16 ~~Igliip~~~~~~~~~~~~gi~~~a~~~g~~~~l~~~~~~----~~~~~~~i~~l~~~-------~vDGiIi~~~~~-- 82 (166) T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAP----PRGTQQLSRLVSEG-------RVDGVLLQRRED-- 82 (166) T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCST----THHHHHHHHHHHSC-------SSSEEEECCCTT-- T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEECCCCC-- T ss_conf 98999959898779999999999999976998999968999----79999999999958-------978898324568-- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCC Q ss_conf 44220076999999974890488520577 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHE 250 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE 250 (529) +......+.+..+|||. ||.. T Consensus 83 -------~~~~~~~l~~~~iPvV~-id~~ 103 (166) T 3kke_A 83 -------FDDDMLAAVLEGVPAVT-INSR 103 (166) T ss_dssp -------CCHHHHHHHHTTSCEEE-ESCC T ss_pred -------CHHHHHHHHHCCCCEEE-ECCC T ss_conf -------75999999975998898-1687 No 384 >>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} (A:) Probab=26.44 E-value=17 Score=15.01 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=9.3 Q ss_pred HHHHHHHCCC-EEEEEEECCCCCCCHH Q ss_conf 9998630597-5899972100111103 Q gi|254780791|r 162 ILQRISCRFP-LRVIIFPVKVQGDECP 187 (529) Q Consensus 162 ~~~~~~~r~p-~~~~~~p~~vQG~~a~ 187 (529) .+..++..+| +.+.....-+||.+.. T Consensus 269 ~~~~~r~~~~~~~~l~pGi~~qggg~~ 295 (352) T 2fds_A 269 EMKIIRNKFPDSYILSPGIGAQNGDLY 295 (352) T ss_dssp HHHHHHHHSTTCCEEECCC-----CHH T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHH T ss_conf 889999878998599087477789988 No 385 >>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4} (A:1-46,A:122-130,A:172-326) Probab=26.41 E-value=30 Score=12.83 Aligned_cols=99 Identities=24% Similarity=0.273 Sum_probs=58.1 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECCCCC---------------CCHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 89998478425899999986305975899-97210011---------------110367999999997410035767775 Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVKVQG---------------DECPKEIANAILQLNTLKEGRTCPRPD 210 (529) Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~vQG---------------~~a~~~i~~ai~~~~~~~~~~~~~~~D 210 (529) +|-+| -.|-++.=+++-|+. ++.++. +.-++=-| -.|.++.++||+. -| T Consensus 6 ~iv~i--GGGtGl~~~l~glk~-~~~~itaiVtv~DdGGssG~l~~~l~~~~~~~a~p~ai~AI~~------------AD 70 (210) T 2q7x_A 6 XITVI--GGGTGSPVILXSLRE-XDVEIAAIVTVADDGGSSGELTGXIYPSSDPLASRRVVQTILE------------SD 70 (210) T ss_dssp EEEEE--CCCTTHHHHHHHHHH-SSCEEEEEECCBSCGGGGSSCCSEEEESBSCCBCSHHHHHHHH------------CS T ss_pred EEEEE--CCCCCHHHHHHHHHH-CCCCEEEEEECCCCCCCCEEHCEEEECCCCCCCCHHHHHHHHH------------CC T ss_conf 49998--785228999999850-9998599998840885522127589915488779999999961------------99 Q ss_pred EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEE--EEEECC---C-CCCHHHHHHH Q ss_conf 899951688844422007699999997489048--852057---7-7525898864 Q gi|254780791|r 211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPI--ISAIGH---E-TDWTLADYAA 260 (529) Q Consensus 211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPV--isgIGH---E-~D~Tl~D~VA 260 (529) +||++=|-==..=+-.+-=..++.||.+++-|+ |+-|+. | ..+|..|+|. T Consensus 71 lIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kVyV~Ni~tq~GET~g~s~~dhV~ 126 (210) T 2q7x_A 71 XIVLGPGSLFTSILPNIVIXEIGRALLETXAEIAYVCNIXTQRGETEHFTDSDHVE 126 (210) T ss_dssp EEEECSSCCCCCCHHHHTSHHHHHHHHHCSSEEEEECCSBCCTTSCTTCCHHHHHH T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHH T ss_conf 89997996077666788899999999851676499971799972337988999999 No 386 >>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} (A:1-237,A:481-521) Probab=25.99 E-value=30 Score=12.93 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=7.1 Q ss_pred HHHHHHHCCCCCCCH Q ss_conf 589886412377721 Q gi|254780791|r 254 TLADYAADLRAPTPT 268 (529) Q Consensus 254 Tl~D~VAD~Ra~TPT 268 (529) +++|+|-.++.=||. T Consensus 172 ~~~d~v~~~~vV~~d 186 (278) T 2ipi_A 172 VVADHLYAVEVVVVD 186 (278) T ss_dssp CGGGGEEEEEEEEEC T ss_pred CCCCCEEEEEEEEEC T ss_conf 000440137999877 No 387 >>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} (A:1-145,A:269-299) Probab=25.99 E-value=31 Score=12.77 Aligned_cols=107 Identities=19% Similarity=0.112 Sum_probs=58.4 Q ss_pred CCCCCCCCCC-CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE----CCCCCCCHHHHHHHHHHHHHHHCCCCCC Q ss_conf 2261001631-0265289998478425899999986305975899972----1001111036799999999741003576 Q gi|254780791|r 132 LFSDQHKNPI-PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP----VKVQGDECPKEIANAILQLNTLKEGRTC 206 (529) Q Consensus 132 lfd~~~k~~l-P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p----~~vQG~~a~~~i~~ai~~~~~~~~~~~~ 206 (529) -|..+.+.+. +.-.+.|+.+=-++|--=+==-.....+-+..++.|. +.+.+.++..+.++-|... T Consensus 24 ~~k~~~~~~~~~L~gk~v~llF~epSTRTR~SFe~A~~~LGg~~i~~~~~~~ss~~kgESv~DtarvLs~y--------- 94 (176) T 1pg5_A 24 KYSKNLNDTRKILSGKTISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNY--------- 94 (176) T ss_dssp HHHSCCTTCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHH--------- T ss_pred HHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--------- T ss_conf 99761166665679998999962787316999999999819962135663100156865099999998626--------- Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE-EECC--CCCCHHHHHH Q ss_conf 777589995168884442200769999999748904885-2057--7752589886 Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS-AIGH--ETDWTLADYA 259 (529) Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis-gIGH--E~D~Tl~D~V 259 (529) +| +|++|+ |.+..+-...-.+.+|||. |=|. ..=-.|+|+- T Consensus 95 --~D-~iviR~---------~~~~~~~~~a~~s~vPVINAG~g~~~HPtQaLaDl~ 138 (176) T 1pg5_A 95 --SD-GIVMRH---------KYDGASRFASEISDIPVINAGDGKHEHPTQAVIDIY 138 (176) T ss_dssp --CS-EEEEEE---------SSBTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHH T ss_pred --CC-EEEEEE---------CCCHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHH T ss_conf --85-599997---------301156775322574132277777778568999999 No 388 >>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} (A:1-146) Probab=25.98 E-value=31 Score=12.77 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=47.1 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) .||-||-- -....+++...-.+++..+ +.. +=.+||... ..||+||+= -.|= T Consensus 3 mrVLiVDD--d~~~~~~l~~~L~~~g~v~----~a~-------~g~eal~~~---------~~~dliilD------~~mP 54 (146) T 1p2f_A 3 WKIAVVDD--DKNILKKVSEKLQQLGRVK----TFL-------TGEDFLNDE---------EAFHVVVLD------VXLP 54 (146) T ss_dssp EEEEEECS--CHHHHHHHHHHHTTTEEEE----EES-------SHHHHHHCC---------SCCSEEEEE------SBCS T ss_pred CEEEEEEC--CHHHHHHHHHHHHHCCEEE----EEC-------CHHHHHHHC---------CCCCEEEEE------CCCC T ss_conf 87999959--9999999999998699899----987-------999999527---------999999995------8998 Q ss_pred HCCHHHHHHHHH----HCCCEEEEEECCCCCCHHH Q ss_conf 007699999997----4890488520577752589 Q gi|254780791|r 226 HFNDEMIVRAIA----NSSIPIISAIGHETDWTLA 256 (529) Q Consensus 226 ~FN~e~laraI~----~~~iPVisgIGHE~D~Tl~ 256 (529) ..|-.++++.|- .+||+++||.+++-+..-+ T Consensus 55 ~~dG~e~~~~lr~~~~~~pii~it~~~~~~~~~~a 89 (146) T 1p2f_A 55 DYSGYEICRXIKETRPETWVILLTLLSDDESVLKG 89 (146) T ss_dssp SSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHH T ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCCEEEEE T ss_conf 88763677654530455745730222221015753 No 389 >>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A (A:57-291) Probab=25.95 E-value=31 Score=12.77 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=48.6 Q ss_pred CEEEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH-----HHHCCHHHHHHHHHHCCC Q ss_conf 7589997210011----1103679999999974100357677758999516888444-----220076999999974890 Q gi|254780791|r 171 PLRVIIFPVKVQG----DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED-----LWHFNDEMIVRAIANSSI 241 (529) Q Consensus 171 p~~~~~~p~~vQG----~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD-----L~~FN~e~laraI~~~~i 241 (529) |+-++-....|+| .....-++++++.+.+.. .-+|.++-.||..-+ |..+-.-.-+-+.+...+ T Consensus 53 ~v~v~a~d~~~~gGs~~~~~~~K~~r~~~lA~~~~-------lPlv~l~ds~G~~~~e~~~~~~~~~~i~~~~~~~~~~v 125 (235) T 2bzr_A 53 DVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-------RPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVI 125 (235) T ss_dssp EEEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-------CCEEEEECCCSCCGGGTTHHHHHHHHHHHHHHHTTTTS T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 99999987850252788677799999999999728-------97899970588655654311100101789999984899 Q ss_pred EEEEEECCCCC---CHHHHHHHCCCCCCCHH Q ss_conf 48852057775---25898864123777214 Q gi|254780791|r 242 PIISAIGHETD---WTLADYAADLRAPTPTG 269 (529) Q Consensus 242 PVisgIGHE~D---~Tl~D~VAD~Ra~TPTa 269 (529) |+|+.|--.+= .-..=+-.|+-..+|++ T Consensus 126 P~i~vv~g~~~gGga~~~~~~~~~~~~~~~~ 156 (235) T 2bzr_A 126 PQISLIMGAAAGGHVYSPALTDFVIMVDQTS 156 (235) T ss_dssp CEEEEECSEEESGGGHHHHHSSEEEEETTTC T ss_pred CEEEEECCCCCCCEEEEECCCCCEEEECCCC T ss_conf 8799973566653156740476158742665 No 390 >>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A (A:1-159,A:246-294) Probab=25.85 E-value=31 Score=12.75 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=54.0 Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCC Q ss_conf 721001111036799999999741003576777589995-16888444220076999999974890488520577--752 Q gi|254780791|r 177 FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA-RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDW 253 (529) Q Consensus 177 ~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~-RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~ 253 (529) +-.-.-|......|+++|+.+...... -.+++.+ =+||+..- .+.-....+.......||++.+|+- .== T Consensus 62 ~~~g~ig~~~~~~i~~~l~~A~~~~~~-----k~ivl~InSpGG~v~a--~~~I~~~i~~~~~~~~pVv~~v~g~aASgg 134 (208) T 3bf0_A 62 ASSDRLQENSLFDIVNTIRQAKDDRNI-----TGIVMDLKNFAGGDQP--SMQYIGKALKEFRDSGKPVYAVGENYSQGQ 134 (208) T ss_dssp -----CCEEEHHHHHHHHHHHHHCTTC-----CCEEEECTEEEECCHH--HHHHHHHHHHHHHHTTCCEEEEESCEEHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCC-----EEEEEECCCCCCCCHH--HHHHHHHHHHHHHHHCCEEEEEECCCCHHH T ss_conf 887754321399999999998349995-----0899981698886599--999999999999970990999962553365 Q ss_pred HHHHHHHCCCCCCCHHHHHHH Q ss_conf 589886412377721456763 Q gi|254780791|r 254 TLADYAADLRAPTPTGAAEMA 274 (529) Q Consensus 254 Tl~D~VAD~Ra~TPTaAAEla 274 (529) +.+=..||.+..+|++-.-.+ T Consensus 135 ~~ia~aaD~I~a~p~a~iGsi 155 (208) T 3bf0_A 135 YYLASFANKIWLSPQGVVDLH 155 (208) T ss_dssp HHHHTTSSEEEECTTCCEECC T ss_pred HHHHHHCCEEEECCCCEEEEE T ss_conf 686743888998799765143 No 391 >>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} (A:) Probab=25.83 E-value=31 Score=12.75 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=60.3 Q ss_pred EEEEEC-CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH----------CCCCCCCCCCEEEEEC Q ss_conf 999847-84258999999863059758999721001111036799999999741----------0035767775899951 Q gi|254780791|r 148 IAVITS-PTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTL----------KEGRTCPRPDIIILAR 216 (529) Q Consensus 148 i~vits-~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~----------~~~~~~~~~D~iii~R 216 (529) |.||-- .|-.-+.-.++.+...-+-.+.+..+.-|+..+....+.......-. ...-....+|+++|. T Consensus 44 i~IinL~kT~~~L~~A~~~i~~~~~~~iLfV~t~~~~~~~i~~~a~~~~~~~v~~rw~gG~LTN~~~~~~~~P~liii~- 122 (208) T 1vi6_A 44 LYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVN- 122 (208) T ss_dssp CEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEES- T ss_pred EEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCEEEEEE- T ss_conf 6996799999999999999975134755787225307789999997359975456455776555777531013279997- Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 6888444220076999999974890488520577752589886 Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) .+..|...++....+.||||+=+---+|.+++||+ T Consensus 123 --------d~~~~~~ai~Ea~~l~IP~Ial~DTn~~p~~idyp 157 (208) T 1vi6_A 123 --------DPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLV 157 (208) T ss_dssp --------CTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE T ss_pred --------CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE T ss_conf --------67610789999986389736760367895358878 No 392 >>2fl8_A Baseplate structural protein GP10; bacteriophage T4, tail, evolution, structural comparisons, virus/viral protein complex; 1.20A {Enterobacteria phage T4} PDB: 2fl9_A (A:284-456) Probab=25.79 E-value=31 Score=12.74 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=9.8 Q ss_pred EEEEECCCCEEEEEEECC Q ss_conf 999874894799999735 Q gi|254780791|r 54 YFSLKDNHSRIDAIIWKG 71 (529) Q Consensus 54 Yf~lkd~~a~i~~~~~~~ 71 (529) |=-.-|++..+....|.. T Consensus 73 Ys~~~d~~~~~~~i~f~~ 90 (173) T 2fl8_A 73 YSVETDENGIPEILHFDS 90 (173) T ss_pred EEEEECCCCCEEEEEECC T ss_conf 368976888777888446 No 393 >>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} (A:) Probab=25.78 E-value=31 Score=12.74 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=21.3 Q ss_pred HHHCCHHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 220076999999974890488520577752 Q gi|254780791|r 224 LWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 224 L~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529) .-..|.+.+-..+-.--||||+.+|+-.+- T Consensus 145 ~~~v~~~~i~~ll~~~~ipvi~~~~~~~~g 174 (282) T 2bty_A 145 VKKVNPEILHALIENDYIPVIAPVGIGEDG 174 (282) T ss_dssp EEEECTHHHHHHHHTTCEEEEESEEECSSS T ss_pred HHEECHHHHHHHHHCCCCEEECCCCCCCCC T ss_conf 110066889999847985254576678870 No 394 >>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* (A:) Probab=25.69 E-value=31 Score=12.73 Aligned_cols=92 Identities=16% Similarity=0.090 Sum_probs=53.9 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) .|||-||-. .....++++..-++|++++..... -..|+..+... .||++|+=- +| T Consensus 1 ~kriLiVdD--~~~~~~~i~~~L~~~g~~v~~a~~----------~~~al~~~~~~-------~~dliilD~------~l 55 (116) T 3a10_A 1 XKRILVVDD--EPNIRELLKEELQEEGYEIDTAEN----------GEEALKKFFSG-------NYDLVILDI------EX 55 (116) T ss_dssp CCEEEEECS--CHHHHHHHHHHHHHTTCEEEEESS----------HHHHHHHHHHS-------CCSEEEECS------CC T ss_pred CCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEEEC------CC T ss_conf 988999969--899999999999986998999689----------99999988634-------877899852------68 Q ss_pred HHCCHHHHHHHHHH--CCCEE--EEEECCCCCCHHHHHHHC Q ss_conf 20076999999974--89048--852057775258988641 Q gi|254780791|r 225 WHFNDEMIVRAIAN--SSIPI--ISAIGHETDWTLADYAAD 261 (529) Q Consensus 225 ~~FN~e~laraI~~--~~iPV--isgIGHE~D~Tl~D~VAD 261 (529) =..|-.++++.|-+ ..+|| +||.+.+.+....--+.| T Consensus 56 p~~~G~el~~~lr~~~~~~pii~lt~~~~~~~~~~~~G~~d 96 (116) T 3a10_A 56 PGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDXSSWAADE 96 (116) T ss_dssp SSSCHHHHHHHHHHHCTTCCEEEEESCGGGGGCGGGGGSSE T ss_pred CCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCE T ss_conf 99987999999997389981999978488999998269988 No 395 >>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=25.56 E-value=31 Score=12.71 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=25.9 Q ss_pred CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 6777589995168884442200769999999748904885 Q gi|254780791|r 206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) ..++|.|||.=|.++..|- .-..-.+.+.+.+..+||+- T Consensus 35 l~~~dgivi~GG~~~~~~~-~~~~~~li~~~~~~~~PilG 73 (186) T 2ywj_A 35 LEGIDALIIPGGESTAIGK-LMKKYGLLEKIKNSNLPILG 73 (186) T ss_dssp GTTCSEEEECCSCHHHHHH-HHHHTTHHHHHHTCCCCEEE T ss_pred HHCCCEEEECCCCCCCCCC-CCCCCCHHHHHHCCCCCEEE T ss_conf 5077868988999851221-11121045677507983898 No 396 >>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (A:69-200) Probab=25.49 E-value=31 Score=12.70 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=30.0 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHH----HCCCEEEEEEECC-CCCCCHHHHHHHHHHHH Q ss_conf 652899984784258999999863----0597589997210-01111036799999999 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRIS----CRFPLRVIIFPVK-VQGDECPKEIANAILQL 197 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~----~r~p~~~~~~p~~-vQG~~a~~~i~~ai~~~ 197 (529) -|+-|+|+|+..++.++|=+.-+. ++.+..|+..++. ..|..-..-.-.|+..+ T Consensus 66 ~p~~I~v~~tC~~~iIGdDi~~i~~~~~~~~~~~vi~v~~~gf~~~~~~~G~~~al~~l 124 (132) T 1mio_A 66 HPAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIANNTV 124 (132) T ss_dssp CCSEEEECCCHHHHHHTCCHHHHHHHHHHHHSSCEEECCCCTTSSSSTHHHHHHHHHHH T ss_pred CCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 99899997786798863489999999889758966998478766864104999999999 No 397 >>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} (A:) Probab=25.48 E-value=31 Score=12.70 Aligned_cols=87 Identities=6% Similarity=0.066 Sum_probs=53.6 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 5289998478425899999986305975-899972100111103679999999974100357677758999516888444 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) +.||-||- +....++++..+-..|++ .+. ++.+.-.|++.+... .||+||+- -+ T Consensus 6 ~~riLiVd--d~~~~~~~l~~~L~~~g~~~v~----------~a~~~~~a~~~l~~~-------~~dlvilD------~~ 60 (129) T 1p6q_A 6 KIKVLIVD--DQVTSRLLLGDALQQLGFKQIT----------AAGDGEQGMKIMAQN-------PHHLVISD------FN 60 (129) T ss_dssp CCCEEEEC--SSHHHHHHHHHHHHTTTCSCEE----------CCSSHHHHHHHHHTS-------CCSEEEEC------SS T ss_pred CCEEEEEE--CCHHHHHHHHHHHHHCCCEEEE----------EECCHHHHHHHHHHC-------CCCEEEEE------CC T ss_conf 88899994--9999999999999987993999----------989999999999728-------99899994------58 Q ss_pred HHHCCHHHHHHHHH----HCCCEEEEEECCCCCCHHH Q ss_conf 22007699999997----4890488520577752589 Q gi|254780791|r 224 LWHFNDEMIVRAIA----NSSIPIISAIGHETDWTLA 256 (529) Q Consensus 224 L~~FN~e~laraI~----~~~iPVisgIGHE~D~Tl~ 256 (529) |-..|-.++++.|- ...+|||-=.||..+.... T Consensus 61 lp~~dG~el~~~ir~~~~~~~~pvi~lt~~~~~~~~~ 97 (129) T 1p6q_A 61 MPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQ 97 (129) T ss_dssp SCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHH T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHH T ss_conf 8999879999999838556898399998139999999 No 398 >>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:1-105,A:242-288) Probab=25.42 E-value=31 Score=12.69 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=60.7 Q ss_pred CEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 28999847842589999998630---597589997210011110367999999997410035767775899951688844 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) +.||||.+.+..-+..+++-+.+ ..++.++++.+- +-+....+.++.+-.. ++|.||++--..... T Consensus 9 ~tIGvIvpd~npff~~ii~gIe~~a~~~Gy~vlI~~s~----~d~e~e~~~i~~li~~-------~VDGIIl~~~~~~~~ 77 (152) T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSE----ENEDKQQDLIETFVSQ-------NVSAIILVPVKSKFQ 77 (152) T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECT----TCHHHHHHHHHHHHHT-------TEEEEEECCSSSCCC T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCCCCCCCCHHHHH T ss_conf 98999918999799999999999999859999999689----9989999999999745-------967221256213566 Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 4220076999999974890488520577752589886 Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) +.+ ....+|+|. |+...|-.-.|+| T Consensus 78 ~~~-----------~~~~IPvV~-idr~~~~~~~~~V 102 (152) T 2qu7_A 78 MKR-----------EWLKIPIMT-LDRELESTSLPSI 102 (152) T ss_dssp CCG-----------GGGGSCEEE-ESCCCSSCCCCEE T ss_pred HHH-----------HHHHEEEEE-CCCCCCCCCCCCC T ss_conf 655-----------431200000-1234333222231 No 399 >>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} (A:26-209) Probab=25.35 E-value=31 Score=12.68 Aligned_cols=26 Identities=4% Similarity=-0.014 Sum_probs=12.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC Q ss_conf 28999847842589999998630597 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFP 171 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p 171 (529) .+..+|.....+.+.+....+....+ T Consensus 35 ~~~~~v~~~~~~~~~~l~~~l~~~~~ 60 (184) T 2fr1_A 35 ARVRELVVDARCGRDELAERLRSVGE 60 (184) T ss_dssp CEEEEEECCTTCCHHHHHHHHTTSCC T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCC T ss_conf 84899678987588899988745688 No 400 >>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:35-261) Probab=25.32 E-value=14 Score=15.88 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=23.6 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEECCCCCH-----------HHHHHCCHHHH Q ss_conf 1110367999999997410035767775-89995168884-----------44220076999 Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPD-IIILARGGGSI-----------EDLWHFNDEMI 232 (529) Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D-~iii~RGGGS~-----------eDL~~FN~e~l 232 (529) |-.|+.+|.+.+ ....+ -| ||+++-||||- ||+-..|+.-+ T Consensus 75 s~~Aa~~il~~~---~~~~~------~dlvl~LiSGGgSALl~~P~~gitL~dk~~~~~~Ll 127 (227) T 2b8n_A 75 TIKTTRRVLELV---DQLNE------NDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALL 127 (227) T ss_dssp HHHHHHHHHHHH---SSCCT------TCEEEEEECTTHHHHSCCBCTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH---HCCCC------CCEEEEEECCCCCCCHHCCCCCCCHHHHHHHHHHHH T ss_conf 999999999999---61899------874899852885401104899999999999999998 No 401 >>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:) Probab=25.20 E-value=32 Score=12.66 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=57.8 Q ss_pred CCCCCCCEEEEEEC-CC-HHHHHHHHHHHHH-CCCEEEE-EEE----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 31026528999847-84-2589999998630-5975899-972----100111103679999999974100357677758 Q gi|254780791|r 140 PIPFIPKIIAVITS-PT-GAVIRDILQRISC-RFPLRVI-IFP----VKVQGDECPKEIANAILQLNTLKEGRTCPRPDI 211 (529) Q Consensus 140 ~lP~~p~~i~vits-~~-~a~~~D~~~~~~~-r~p~~~~-~~p----~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ 211 (529) ..-.-|++||||-. .+ +..-.-+++.+.+ .|+ ++ +.| ..+-|..+..++.+. . ..+|+ T Consensus 8 ~~l~~pk~iAViG~S~~~~~~g~~v~~~l~~~g~~--v~~v~p~~~~~ei~G~~~~~sl~ei-------p-----~~iD~ 73 (145) T 2duw_A 8 GILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH--VIPVSPKVAGKTLLGQQGYATLADV-------P-----EKVDM 73 (145) T ss_dssp HHHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC--EEEECSSSTTSEETTEECCSSTTTC-------S-----SCCSE T ss_pred HHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCE--EEEECCCCCEEEEEEEECCCCHHHC-------C-----CCCCE T ss_conf 99866893999920799998389999999868986--8985245441256206225754446-------7-----62116 Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC Q ss_conf 99951688844422007699999997489048852057775258988641 Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529) Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529) ++|++..-... .+++.+.+..++.+--+..-.+..+.+.+.+ T Consensus 74 v~i~~p~~~~~--------~~i~e~~~~g~k~~~~~~~~~~e~~~~~a~~ 115 (145) T 2duw_A 74 VDVFRNSEAAW--------GVAQEAIAIGAKTLWLQLGVINEQAAVLARE 115 (145) T ss_dssp EECCSCSTHHH--------HHHHHHHHHTCCEEECCTTCCCHHHHHHHHT T ss_pred EEEECCHHHHH--------HHHHHHHHCCCCEEEECCCHHHHHHHHHHHH T ss_conf 89951499999--------9999999729975995245441999999999 No 402 >>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} (A:27-171) Probab=25.19 E-value=32 Score=12.66 Aligned_cols=32 Identities=9% Similarity=0.283 Sum_probs=25.2 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 65289998478425899999986305975899 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVI 175 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~ 175 (529) -+.-+......+...++.+...+.+++++-++ T Consensus 46 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 77 (145) T 2zvf_A 46 SXKVVAEVVDADXQALQKLAERLAEKGAVGCL 77 (145) T ss_dssp SCEEEEEECSCCHHHHHHHHHHHHHTTEEEEE T ss_pred CCEEEEEEECCCHHHHHHHHHHHHCCCCEEEE T ss_conf 95068866258989999999998434774887 No 403 >>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} (A:) Probab=24.98 E-value=32 Score=12.63 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=24.6 Q ss_pred HHCCHHHHHCCCEEEEECCCC-CEECCHHHCCCCCEEE Q ss_conf 716967773146199984898-8957778929998699 Q gi|254780791|r 450 QSFAYKNTLKRGYTSIQDTNN-NFITQKRNLATKTRIL 486 (529) Q Consensus 450 ~slsP~~~L~RGYaiv~~~~G-kiI~s~~~l~~gd~i~ 486 (529) +.+.|...|-.|=--++..+| +.|++.+++..|+... T Consensus 47 ~~l~~~~~l~~~Vr~lyT~~G~~~V~~l~dl~~g~~yV 84 (116) T 1uf0_A 47 RTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYV 84 (116) T ss_dssp HHSCCSSSCSSCCCEEEESSSSCEECSTTSCCSSEEEE T ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCHHHHCCCCEEE T ss_conf 98711478987724998699980858999966899899 No 404 >>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A (A:108-195) Probab=24.89 E-value=14 Score=15.70 Aligned_cols=20 Identities=15% Similarity=0.514 Sum_probs=7.2 Q ss_pred EEEEECCCHHHHHHHHHHHH Q ss_conf 99984784258999999863 Q gi|254780791|r 148 IAVITSPTGAVIRDILQRIS 167 (529) Q Consensus 148 i~vits~~~a~~~D~~~~~~ 167 (529) +|++++.+-.++.|+++|++ T Consensus 39 vglvspssvsvladmlrtlr 58 (88) T 2bbr_A 39 VGLVSPSSVSVLADMLRTLR 58 (88) T ss_dssp TTSCBTTBCHHHHHHHHHTT T ss_pred HCCCCCCHHHHHHHHHHHCC T ss_conf 09989623999999999849 No 405 >>2qo3_A Eryaii erythromycin polyketide synthase modules 3 and 4; ketosynthase, acyltransferase, phosphopantetheine; 2.59A {Saccharopolyspora erythraea} (A:439-530,A:837-864) Probab=24.59 E-value=32 Score=12.57 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=35.4 Q ss_pred HHHHHHHHHHH-C--CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-HHHHHCC Q ss_conf 89999998630-5--9758999721001111036799999999741003576777589995168884-4422007 Q gi|254780791|r 158 VIRDILQRISC-R--FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-EDLWHFN 228 (529) Q Consensus 158 ~~~D~~~~~~~-r--~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-eDL~~FN 228 (529) -+.|++.|+.. | +|+...+.-. ...+++.+|+.+..- .+++..+--|-|+. .||.+|- T Consensus 38 ~l~DLayTL~~rRs~~~~R~aiva~------s~~el~~~L~~~~~~-------~~~i~fvFsGqGaQw~~~~~~~ 99 (120) T 2qo3_A 38 DLAGVGLGLATTRARHEHRAAVVAS------TREEAVRGLREIAAG-------AATADAVVEGVTEVDGDLSAFL 99 (120) T ss_dssp CHHHHHHHHHHSSCCCSEEEEEEES------SHHHHHHHHHHHHHT-------CCCCTTEEEEECSCSCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEC------CHHHHHHHHHHHHCC-------CCCCCCCCCCCCCCCCHHHHHH T ss_conf 3678999986544305561588734------579998889998515-------6532232222234787899999 No 406 >>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:1-163,A:294-332) Probab=24.50 E-value=32 Score=12.56 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=67.4 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-CCCCCCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHH Q ss_conf 99999999765401226100163-10265289998478-42589999998630---597589997210011110367999 Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNP-IPFIPKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIAN 192 (529) Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~-lP~~p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ 192 (529) ...++.++-.++.||.-....+. .......|+++... +..-+.+++.-+.+ +.++.+.++++.-..+ .... T Consensus 35 ~TrerV~~aa~elgY~~~~~a~~~~~~~~~~i~~i~~~~~~~~~~~il~gi~~~a~~~G~~v~i~~~~~d~~----~~~~ 110 (202) T 2o20_A 35 KTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDNDVE----KEEK 110 (202) T ss_dssp ---------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH----HHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCHH----HHHH T ss_conf 999999999999689769889976308874520013455565211112220345552585245134568778----8999 Q ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE Q ss_conf 99999741003576777589995168884442200769999999748904885 Q gi|254780791|r 193 AILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 193 ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529) .++.+... ++|.+|+.-..- ++..+..+....+|++. T Consensus 111 ~l~~l~~~-------~vdGiIi~~~~~---------~~~~~~~l~~~~iPvVl 147 (202) T 2o20_A 111 VLETFLSK-------QVDGIVYMGSSL---------DEKIRTSLKNSRTPVVL 147 (202) T ss_dssp HHHHHHHT-------TCSEEEECSSCC---------CHHHHHHHHHHCCCEEE T ss_pred HHHHHHHC-------CCCCCCCCCCCC---------CHHHHHHHCCCCCCEEE T ss_conf 99999820-------756540101345---------36777663157787786 No 407 >>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A (A:1-82) Probab=24.26 E-value=33 Score=12.52 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=14.9 Q ss_pred EEEEEEE---CCCCCCCHHHHHH Q ss_conf 5899972---1001111036799 Q gi|254780791|r 172 LRVIIFP---VKVQGDECPKEIA 191 (529) Q Consensus 172 ~~~~~~p---~~vQG~~a~~~i~ 191 (529) +.|.+|. +.+||.+|..++. T Consensus 41 ~tIt~Y~SGKVlfQGk~ae~~a~ 63 (82) T 2d0b_A 41 VVITAYRSGKVLFQGKAAEQEAA 63 (82) T ss_dssp CEEEEETTSEEEEESTTHHHHHH T ss_pred CEEEEEECCEEEEECCCHHHHHH T ss_conf 58999957789996587799999 No 408 >>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:1-133) Probab=24.24 E-value=33 Score=12.52 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=47.5 Q ss_pred CCCCEEEEEECCCHHHHH--HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 265289998478425899--999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIR--DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~--D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) .-+++|+|+-|-.+=|-+ |+++...++ |+|.. +=+..-...+.+.++.|+ |..+++.-.... T Consensus 7 ~~mk~i~ILGSTGSIG~qtL~Vi~~~~d~--f~vv~----lsa~~n~~~L~~q~~ef~----------p~~v~v~d~~~~ 70 (133) T 1q0q_A 7 SGMKQLTILGSTGSIGCSTLDVVRHNPEH--FRVVA----LVAGKNVTRMVEQCLEFS----------PRYAVMDDEASA 70 (133) T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHCTTT--EEEEE----EEESSCHHHHHHHHHHHC----------CSEEEESSHHHH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCC--CEEEE----EEECCCHHHHHHHHHHHC----------CCEEEEECHHHH T ss_conf 89968999754879899999999839477--48999----994897999999999839----------999999488999 Q ss_pred HH--HHH---------HCCHHHHHHHHHHCCCEE-EEEE Q ss_conf 44--422---------007699999997489048-8520 Q gi|254780791|r 221 IE--DLW---------HFNDEMIVRAIANSSIPI-ISAI 247 (529) Q Consensus 221 ~e--DL~---------~FN~e~laraI~~~~iPV-isgI 247 (529) .+ +++ .+.++.|.+.+..+++-+ ++|| T Consensus 71 ~~lk~~l~~~~~~~~v~~G~~gl~~~~~~~~~D~vv~Ai 109 (133) T 1q0q_A 71 KLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAI 109 (133) T ss_dssp HHHHHHHHHTTCCCEEEESHHHHHHHHTCTTCCEEEECC T ss_pred HHHHHHHHHCCCCCEEEECCHHHHHHHCCCCCCEEEEEC T ss_conf 999998773489957975706888874567778999942 No 409 >>1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} (A:) Probab=24.24 E-value=33 Score=12.52 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=53.6 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) .|+||-||-. ...+..+++..-..+++.+....+. -.|++.+... .||+||+-= . T Consensus 1 ~P~rVLiVdd--d~~~~~~l~~~L~~~g~~v~~a~~~----------~~al~~~~~~-------~~dliilD~------~ 55 (122) T 1zgz_A 1 XPHHIVIVED--EPVTQARLQSYFTQEGYTVSVTASG----------AGLREIXQNQ-------SVDLILLDI------N 55 (122) T ss_dssp -CCEEEEECS--SHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHHHHHS-------CCSEEEEES------C T ss_pred CCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHCC-------CCCEEEEEH------H T ss_conf 9985999979--9999999999999639999998999----------9999997515-------996886500------1 Q ss_pred HHHCCHHHHHHHHHHC-CCEEEEEECCCCCC Q ss_conf 2200769999999748-90488520577752 Q gi|254780791|r 224 LWHFNDEMIVRAIANS-SIPIISAIGHETDW 253 (529) Q Consensus 224 L~~FN~e~laraI~~~-~iPVisgIGHE~D~ 253 (529) +-..|-.++++.|.+- ++|||-=.+|.... T Consensus 56 mp~~dG~~~~~~ir~~~~~pii~ls~~~~~~ 86 (122) T 1zgz_A 56 LPDENGLXLTRALRERSTVGIILVTGRSDRI 86 (122) T ss_dssp CSSSCHHHHHHHHHTTCCCEEEEEESSCCHH T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEECCCHH T ss_conf 0463025789998722566359999449999 No 410 >>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} (A:) Probab=24.23 E-value=33 Score=12.52 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=46.5 Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH Q ss_conf 98478425899999986305975899972100111103679999999974100357677758999516888444220076 Q gi|254780791|r 150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND 229 (529) Q Consensus 150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~ 229 (529) +|+..+.....+....+....+-....+++-|.=+++..+.++.+..- ...+|++|-.=|.+...++-.+.+ T Consensus 49 ~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~g~iDilVnnA~~~~~~~~~~~~~ 120 (267) T 1vl8_A 49 VVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK--------FGKLDTVVNAAGINRRHPAEEFPL 120 (267) T ss_dssp EEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH--------HSCCCEEEECCCCCCCCCGGGCCH T ss_pred EEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCCEEEECCCCCCCCCHHHCCH T ss_conf 999798899999999999971994899984699999999999999997--------399989998999899999155999 Q ss_pred HHHHHHHH Q ss_conf 99999997 Q gi|254780791|r 230 EMIVRAIA 237 (529) Q Consensus 230 e~laraI~ 237 (529) ++.-+.+. T Consensus 121 ~~~~~~~~ 128 (267) T 1vl8_A 121 DEFRQVIE 128 (267) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99997533 No 411 >>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:1-105,A:202-373) Probab=24.16 E-value=33 Score=12.51 Aligned_cols=128 Identities=22% Similarity=0.195 Sum_probs=62.1 Q ss_pred EEEEEEEC-C-CCHHHHHHHHHHHHHHHH-HC-----CCCCC--------------CCCCCCCCCEEEEEECCCHHHHHH Q ss_conf 99971016-8-007999999999976540-12-----26100--------------163102652899984784258999 Q gi|254780791|r 104 IIESLIPS-G-SGTLLTALEKRKKKLLEE-GL-----FSDQH--------------KNPIPFIPKIIAVITSPTGAVIRD 161 (529) Q Consensus 104 ~v~~i~~~-g-~G~l~~~~e~lk~~L~~e-Gl-----fd~~~--------------k~~lP~~p~~i~vits~~~a~~~D 161 (529) .|-+|.-+ | .-...+.++.+++-++++ |. +|..- +...|.-..-|++---.++..+.. T Consensus 63 ~~~R~n~sh~~~~~~~~~~~~~r~~~~~~~~~~~~i~~d~~GpiP~it~~D~~~~v~~a~p~G~rgi~~sfv~~a~~~~~ 142 (277) T 3gg8_A 63 NVCRLNFSHGDHETHARTVQNIQEAMKQRPEARLAILLDTKGPLPVIGEKDKHDILNFGIPMGCNFIAASFVQSADDVRY 142 (277) T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHHHHHCTTCCCEEEEECCCCSCSSCHHHHHHHHHTTTTTTCCEEEETTCCSHHHHHH T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH T ss_conf 99999899999999999999999999865899859999488981244235689999999971998563202465577899 Q ss_pred HHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH--HHHHC-CHHHHHHHHH Q ss_conf 9998630597-589997210011110367999999997410035767775899951688844--42200-7699999997 Q gi|254780791|r 162 ILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE--DLWHF-NDEMIVRAIA 237 (529) Q Consensus 162 ~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e--DL~~F-N~e~laraI~ 237 (529) +...++.... ..|+.-==...|-....+|+.+ +|.|+|+||-=|.+ --+-| ..+.+.+++- T Consensus 143 ~~~~l~~~~~~~~viakIEt~eavenldeIl~~---------------~DgI~iGrgDLs~~lg~~~~~~~q~~i~~~~~ 207 (277) T 3gg8_A 143 IRGLLGPRGRHIRIIPKIENVEGLVNFDEILAE---------------ADGIMIARGDLGMEIPPEKVFLAQKMMIAKCN 207 (277) T ss_dssp HHHHHTGGGTTCEEEEEECSHHHHHTHHHHHHH---------------CSCEEEEHHHHHHHSCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHH---------------CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999998669836999973446666522889875---------------78799976870003798899999999999877 Q ss_pred HCCCEEEEE Q ss_conf 489048852 Q gi|254780791|r 238 NSSIPIISA 246 (529) Q Consensus 238 ~~~iPVisg 246 (529) ..--|++.+ T Consensus 208 ~~~k~v~~a 216 (277) T 3gg8_A 208 VVGKPVITA 216 (277) T ss_dssp HTTCCEEEE T ss_pred HCCCEEEEE T ss_conf 339838995 No 412 >>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} (A:) Probab=24.16 E-value=33 Score=12.51 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=56.4 Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442 Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) .+||-||-. ....+.+++.+-..+++++.... +--.|++.+... .||+||+ |+ T Consensus 3 ~~~iLiVdd--~~~~~~~l~~~l~~~g~~v~~a~----------~~~eal~~l~~~-------~~dliil--------D~ 55 (124) T 1srr_A 3 NEKILIVDD--QSGIRILLNEVFNKEGYQTFQAA----------NGLQALDIVTKE-------RPDLVLL--------DM 55 (124) T ss_dssp CCEEEEECS--CHHHHHHHHHHHHTTTCEEEEES----------SHHHHHHHHHHH-------CCSEEEE--------ES T ss_pred CCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE--------EC T ss_conf 885999979--99999999999998699899959----------989999999807-------9988998--------53 Q ss_pred H--HCCHHHHHHHHH--HCCCEEEEEECCCCCCHHHHH Q ss_conf 2--007699999997--489048852057775258988 Q gi|254780791|r 225 W--HFNDEMIVRAIA--NSSIPIISAIGHETDWTLADY 258 (529) Q Consensus 225 ~--~FN~e~laraI~--~~~iPVisgIGHE~D~Tl~D~ 258 (529) + ..|-.++++.|- ...+|||-=.||......... T Consensus 56 ~lp~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~~~ 93 (124) T 1srr_A 56 KIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQES 93 (124) T ss_dssp CCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH T ss_conf 69999889999999960999989999888999999999 No 413 >>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} (A:) Probab=24.14 E-value=33 Score=12.51 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=15.7 Q ss_pred CCEEEEECCCC-CHHHHHHCCHHHHHHH-HHHCCCEEEE Q ss_conf 75899951688-8444220076999999-9748904885 Q gi|254780791|r 209 PDIIILARGGG-SIEDLWHFNDEMIVRA-IANSSIPIIS 245 (529) Q Consensus 209 ~D~iii~RGGG-S~eDL~~FN~e~lara-I~~~~iPVis 245 (529) +|+||++..|- .+..++ --.+++. +..+++||+. T Consensus 252 ~dliV~G~~~~~~~~~~~---~Gs~s~~il~~~~~pVli 287 (294) T 3loq_A 252 ATTIFXGSRGAGSVXTXI---LGSTSESVIRRSPVPVFV 287 (294) T ss_dssp CSEEEEECCCCSCHHHHH---HHCHHHHHHHHCSSCEEE T ss_pred CCEEEEECCCCCCCCCCC---CCHHHHHHHHHCCCCEEE T ss_conf 989999478886531030---380999999609998999 No 414 >>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:104-204) Probab=24.05 E-value=33 Score=12.49 Aligned_cols=83 Identities=23% Similarity=0.204 Sum_probs=48.8 Q ss_pred CCCEEEEEECC--CHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC Q ss_conf 65289998478--4258999999863059758999-----7210011110367999999997410035767775899951 Q gi|254780791|r 144 IPKIIAVITSP--TGAVIRDILQRISCRFPLRVII-----FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529) Q Consensus 144 ~p~~i~vits~--~~a~~~D~~~~~~~r~p~~~~~-----~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529) .-+||+|++-. ....+.|+++ .+++++.. .+..+=+...+.++.++++.+... ..|+|+|+= T Consensus 11 ~~~ri~V~py~~~~~~~~~~~~~----~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~adai~l~C 79 (101) T 2eq5_A 11 YGRRVGVLNLTEETPKVIRSILG----NNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEK-------GVEVIALGC 79 (101) T ss_dssp TCSSEEEECSSSCCCHHHHHHHG----GGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHT-------TCSEEEECC T ss_pred HCCCEEEEECHHHHHHHHHHHHH----HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHC-------CCCEEEEEC T ss_conf 27863566504626999999998----7401013440221001245788999999999999866-------998899806 Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEE Q ss_conf 6888444220076999999974890488 Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVi 244 (529) .|=..-|+ +..--....+||| T Consensus 80 t~l~~~~~-------~~~Le~~lgvPVi 100 (101) T 2eq5_A 80 TGMSTIGI-------APVLEEEVGIPVI 100 (101) T ss_dssp THHHHHTC-------HHHHHHHHSSCEE T ss_pred CCCCHHHH-------HHHHHHCCCCEEE T ss_conf 87202555-------8988435898698 No 415 >>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:62-285) Probab=24.02 E-value=33 Score=12.49 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=56.5 Q ss_pred EEEEEEECCCCC----CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH--HHC-CHHHHH---HHHHHCCC Q ss_conf 589997210011----11036799999999741003576777589995168884442--200-769999---99974890 Q gi|254780791|r 172 LRVIIFPVKVQG----DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL--WHF-NDEMIV---RAIANSSI 241 (529) Q Consensus 172 ~~~~~~p~~vQG----~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL--~~F-N~e~la---raI~~~~i 241 (529) +-|+-....|+| .....-++++++.+.+.+ .-+|.++.+||..-.- -.+ --..+. .+++...+ T Consensus 62 V~v~a~d~~~~gGs~~~~~~~K~~r~~~~A~~~~-------iPiv~l~dt~G~~~~e~~e~~~~~~~~~~~~~~~~~~~v 134 (224) T 2f9i_B 62 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-------LPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGL 134 (224) T ss_dssp EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-------CCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTC T ss_pred EEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-------CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 6512326777535578799999999999999614-------537999278975546555431111367899999986899 Q ss_pred EEEEEECCCCCCHH-HH--HHHCCCCCCCHHH Q ss_conf 48852057775258-98--8641237772145 Q gi|254780791|r 242 PIISAIGHETDWTL-AD--YAADLRAPTPTGA 270 (529) Q Consensus 242 PVisgIGHE~D~Tl-~D--~VAD~Ra~TPTaA 270 (529) |+|+.|+...=.-. += .-+|+...+|++. T Consensus 135 P~i~vi~g~~~gG~~~~~~~~~~~~~~~~~~~ 166 (224) T 2f9i_B 135 LYISYLTHPTTGGVSASFASVGDINLSEPKAL 166 (224) T ss_dssp CEEEEEEEEEEHHHHTTGGGCCSEEEECTTCB T ss_pred CEEEEECCCCCCCEEEEEEECCCEEEECCCCE T ss_conf 75999826631111555430374475048608 No 416 >>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} (A:1-206) Probab=24.00 E-value=33 Score=12.49 Aligned_cols=29 Identities=0% Similarity=-0.057 Sum_probs=14.8 Q ss_pred HHHHHCCHHHHHHHHH---HCCCEEEEEECCC Q ss_conf 4422007699999997---4890488520577 Q gi|254780791|r 222 EDLWHFNDEMIVRAIA---NSSIPIISAIGHE 250 (529) Q Consensus 222 eDL~~FN~e~laraI~---~~~iPVisgIGHE 250 (529) .|...++++.+...+. .+.-+++.++=++ T Consensus 103 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (206) T 1qwj_A 103 ATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR 134 (206) T ss_dssp TTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 57776672789999999985899879999840 No 417 >>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271) Probab=23.99 E-value=33 Score=12.48 Aligned_cols=83 Identities=14% Similarity=0.073 Sum_probs=59.9 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC-CC--E-EEEEEE--CCCCCCCHHHHHHHH Q ss_conf 99999976540122610016310265289998478425899999986305-97--5-899972--100111103679999 Q gi|254780791|r 120 LEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR-FP--L-RVIIFP--VKVQGDECPKEIANA 193 (529) Q Consensus 120 ~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r-~p--~-~~~~~p--~~vQG~~a~~~i~~a 193 (529) -.+..++|.+.|+ +++++|..++....++...+... ++ + .|+..| +.+=|++....|..| T Consensus 38 a~e~l~~L~~~G~--------------~~~~vTN~~~~~~~~~~~~l~~~gi~~~~d~i~~sp~~~i~VGDs~~~Di~~A 103 (145) T 1vjr_A 38 SLEFLETLKEKNK--------------RFVFFTNNSSLGAQDYVRKLRNXGVDVPDDAVVTSKERXAXVGDRLYTDVKLG 103 (145) T ss_dssp HHHHHHHHHHTTC--------------EEEEEESCTTSCHHHHHHHHHHTTCCCCGGGEEEHGGGEEEEESCHHHHHHHH T ss_pred HHHHHHHHHHCCC--------------CEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCHCHHCCCCCCCHHHHHHHH T ss_conf 9999999997699--------------78994589989999999999851556652323458110351177817899999 Q ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHC Q ss_conf 9999741003576777589995168884442200 Q gi|254780791|r 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF 227 (529) Q Consensus 194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~F 227 (529) ... ....|.+.+|+.+.+++-.. T Consensus 104 ~~a-----------G~~ti~v~~g~~~~~~~~~~ 126 (145) T 1vjr_A 104 KNA-----------GIVSILVLTGETTPEDLERA 126 (145) T ss_dssp HHH-----------TCEEEEESSSSCCHHHHHHC T ss_pred HHC-----------CCCEEEECCCCCCHHHHHHC T ss_conf 987-----------99499989899997889736 No 418 >>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} (A:) Probab=23.96 E-value=33 Score=12.48 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=60.6 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 99997654012261001631026528999847842589999998630597589997210011110367999999997410 Q gi|254780791|r 122 KRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLK 201 (529) Q Consensus 122 ~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~ 201 (529) .+-++|.++|.= -++++.+...+......+....+ .+..+.+-|.-+++....++.+.... T Consensus 17 aia~~la~~G~~---------------V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~--- 77 (256) T 1geg_A 17 AIALRLVKDGFA---------------VAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTL--- 77 (256) T ss_dssp HHHHHHHHTTCE---------------EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHT--- T ss_pred HHHHHHHHCCCE---------------EEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHHHHHHC--- T ss_conf 999999987998---------------99998989999999999985289-71378512100057789999999963--- Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH Q ss_conf 03576777589995168884442200769999999 Q gi|254780791|r 202 EGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 (529) Q Consensus 202 ~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI 236 (529) ..+|++|-.-|.+....++-+.+++.-+.+ T Consensus 78 -----g~iDilvnnAg~~~~~~~~~~~~~~~~~~~ 107 (256) T 1geg_A 78 -----GGFDVIVNNAGVAPSTPIESITPEIVDKVY 107 (256) T ss_dssp -----TCCCEEEECCCCCCCBCGGGCCHHHHHHHH T ss_pred -----CCCEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf -----997099989876668876779999999999 No 419 >>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} (A:1-70) Probab=23.91 E-value=33 Score=12.47 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHCCCCCCCCC Q ss_conf 999999765401226100163 Q gi|254780791|r 120 LEKRKKKLLEEGLFSDQHKNP 140 (529) Q Consensus 120 ~e~lk~~L~~eGlfd~~~k~~ 140 (529) -|..+++|.+.|++|.+.|.. T Consensus 12 gE~~Rr~L~~~~lld~~ykI~ 32 (70) T 2yx1_A 12 GEQTRRILIENNLLNKDYKIT 32 (70) T ss_dssp HHHHHHHHHHTTCBCTTSCCE T ss_pred HHHHHHHHHHCCCCCCCCEEE T ss_conf 799999997694706896476 No 420 >>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} (A:) Probab=23.89 E-value=33 Score=12.47 Aligned_cols=41 Identities=10% Similarity=0.227 Sum_probs=30.1 Q ss_pred HHCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEE Q ss_conf 73146199984898895777892999869999911099999950 Q gi|254780791|r 457 TLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVIN 500 (529) Q Consensus 457 ~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~ 500 (529) .+..|. |. -||+.++....++.||.|++.+.+-.....+.. T Consensus 22 ~i~~g~-I~--VNg~~~~~~~~v~~gD~i~i~~~~~~~~~~~~~ 62 (92) T 2k6p_A 22 MCNVGA-VW--LNGSCAKASKEVKAGDTISLHYLKGIEEYTILQ 62 (92) T ss_dssp HHHHTC-CE--ETTEECCTTCBCCTTCEEEECCSSCCEEEEECC T ss_pred HHHCCC-EE--ECCEEEEECCCCCCCCEEEEEECCCCEEEEEEE T ss_conf 998997-99--898998662471899999998489636899997 No 421 >>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomics; 1.60A {Pyrococcus horikoshii OT3} (A:1-82,A:152-231) Probab=23.88 E-value=33 Score=12.47 Aligned_cols=131 Identities=11% Similarity=0.009 Sum_probs=75.1 Q ss_pred EEEEEEEEEEC---CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-E--- Q ss_conf 79999971016---8007999999999976540122610016310265289998478425899999986305975-8--- Q gi|254780791|r 101 YQIIIESLIPS---GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-R--- 173 (529) Q Consensus 101 ~ql~v~~i~~~---g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~--- 173 (529) +.+++.+++-. ..+.+.....+..++|.+.|+ .++|+|+.+...+.+++..+.-..++ . T Consensus 3 ~k~i~~D~DgTl~~~~~~l~~~~~e~l~~l~~~Gi--------------~~~i~Tgr~~~~~~~~l~~~~~~~~~i~~nG 68 (162) T 1wr8_A 3 IKAISIDIDGTITYPNRMIHEKALEAIRRAESLGI--------------PIMLVTGNTVQFAEAASILIGTSGPVVAEDG 68 (162) T ss_dssp CCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTC--------------CEEEECSSCHHHHHHHHHHHTCCSCEEEGGG T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC--------------EEEEEECCCCCCCHHHHHHCCCCCCEEEECC T ss_conf 45999966778828989469999999999985799--------------0999935750010224553277675275157 Q ss_pred -EEEEECCCCC-CC-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC Q ss_conf -9997210011-11-03679999999974100357677758999516888444220076999999974890488520577 Q gi|254780791|r 174 -VIIFPVKVQG-DE-CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE 250 (529) Q Consensus 174 -~~~~p~~vQG-~~-a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE 250 (529) .+..+-.+.= .- --.++++.|...... ..-+++.++ -+..|+ .. ...+.++|..+-++. T Consensus 69 ~~i~~~~~~~~~~p~~K~~~i~~l~~~~~~------~~~~~~~iG---D~~nD~------~~---~~~a~~~~a~~~~~~ 130 (162) T 1wr8_A 69 GAISYKKKRIFLASINKGSGIEKASEFLGI------KPKEVAHVG---DGENDL------DA---FKVVGYKVAVAQAPK 130 (162) T ss_dssp TEEEETTEEEESCCCCHHHHHHHHHHHHTS------CGGGEEEEE---CSGGGH------HH---HHHSSEEEECTTSCH T ss_pred CEEEECCCEEEEECCCCCHHHHHHHHHHCC------CHHHEEECC---CCHHHH------HH---HHHCCEEEEECCCCH T ss_conf 323314531243116880333102244034------777803105---886379------99---996890899689889 Q ss_pred CCCHHHHHHHCCCCCCC Q ss_conf 75258988641237772 Q gi|254780791|r 251 TDWTLADYAADLRAPTP 267 (529) Q Consensus 251 ~D~Tl~D~VAD~Ra~TP 267 (529) . +.-.||.-.+++ T Consensus 131 ~----~~~~a~~v~~~~ 143 (162) T 1wr8_A 131 I----LKENADYVTKKE 143 (162) T ss_dssp H----HHTTCSEECSSC T ss_pred H----HHHHCCEEECCC T ss_conf 9----998599998999 No 422 >>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:92-305) Probab=23.84 E-value=33 Score=12.46 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=17.0 Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEE Q ss_conf 8999847842589999998630597-5899972 Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFP-LRVIIFP 178 (529) Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p 178 (529) +||+..+-....+-+++..+.+.|| +++.++. T Consensus 4 rIg~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~ 36 (214) T 3fxq_A 4 TFAASPAIALAALPLALASFAREFPDVTVNVRD 36 (214) T ss_dssp EEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEE T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 996256216878999999999978997787774 No 423 >>2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein A; putative protein, molybdenum cofactor, structural genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5} (A:) Probab=23.84 E-value=33 Score=12.46 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=6.5 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 1111036799999999 Q gi|254780791|r 182 QGDECPKEIANAILQL 197 (529) Q Consensus 182 QG~~a~~~i~~ai~~~ 197 (529) .+.+....+..+...+ T Consensus 80 ~~~g~~~~i~~~~~~~ 95 (201) T 2e8b_A 80 EESASIIGLYTALKHA 95 (201) T ss_dssp SSCCHHHHHHHHHHHC T ss_pred CCCCCHHHHHHHHHHH T ss_conf 2234057787666651 No 424 >>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} (A:96-127,A:223-358) Probab=23.81 E-value=33 Score=12.46 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=17.4 Q ss_pred EEEEEECCCCCCCCCC-EEEEEEECCC Q ss_conf 9999970543568886-2799987489 Q gi|254780791|r 36 CVRGEISGYRGIHSSG-HAYFSLKDNH 61 (529) Q Consensus 36 ~v~gEis~~~~~~~sG-H~Yf~lkd~~ 61 (529) .+..=|.+|.....|| |+.|+|.|+. T Consensus 24 ~~~~~~~~~~~~~GSG~H~H~SL~~~g 50 (168) T 2j9i_A 24 LLSAFIADFAAAAGAGSHSIWDVGAAG 50 (168) T ss_dssp ECCEECCCCTTSCCCBCCEEECEEETT T ss_pred EEEEEEEEECCCCCCCEEEEEECCCCC T ss_conf 876316788212334427999534899 No 425 >>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:1-108,A:243-305) Probab=23.77 E-value=33 Score=12.45 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=49.4 Q ss_pred CCEEEEEECCCH-HHHHHHHHHHH---HCCCEEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 528999847842-58999999863---059758999-7210011110367999999997410035767775899951688 Q gi|254780791|r 145 PKIIAVITSPTG-AVIRDILQRIS---CRFPLRVII-FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 145 p~~i~vits~~~-a~~~D~~~~~~---~r~p~~~~~-~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) ..+||+|+...+ --+..+++-+. +..++++.+ +++ + +-...-+++|+.+-.. .+|.|||.=... T Consensus 4 s~~I~viv~~~~~~f~~~v~~Gie~aa~~~G~~~~~~~~~--~--~d~~~q~~~ie~li~~-------~vdGIii~p~d~ 72 (171) T 3g1w_A 4 NETYXXITFQSGXDYWKRCLKGFEDAAQALNVTVEYRGAA--Q--YDIQEQITVLEQAIAK-------NPAGIAISAIDP 72 (171) T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECS--S--SCHHHHHHHHHHHHHH-------CCSEEEECCSST T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--C--CCHHHHHHHHHHHHHC-------CCCEEEEECCCH T ss_conf 8869999789998299999999999999729979999799--9--9999999999999977-------999999967873 Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 844422007699999997489048852 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisg 246 (529) .. ....++.+.+..||||+- T Consensus 73 ~~-------~~~~i~~a~~~gIPVV~i 92 (171) T 3g1w_A 73 VE-------LTDTINKAVDAGIPIVLF 92 (171) T ss_dssp TT-------THHHHHHHHHTTCCEEEE T ss_pred HH-------HHHHHHHHHHCCCCEEEE T ss_conf 77-------899999999869929998 No 426 >>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} (A:17-217) Probab=23.72 E-value=33 Score=12.44 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=9.9 Q ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 99999974890488520577752589886 Q gi|254780791|r 231 MIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 231 ~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ++++.++...+.||||-|.=.|.-..+-+ T Consensus 44 ~lg~~la~~g~~vvsGg~~Gvm~aa~~~a 72 (201) T 1wek_A 44 RLGRALAEAGFGVVTGGGPGVXEAVNRGA 72 (201) T ss_dssp HHHHHHHHHTCEEEECSCSHHHHHHHHHH T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHH T ss_conf 99999985873799667811777988656 No 427 >>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} (A:) Probab=23.70 E-value=33 Score=12.44 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=46.2 Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 10265289998478425899999986305975899972100111103679999999974100357677758999516888 Q gi|254780791|r 141 IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 141 lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) -+....+|+||.=..+- .+.|.+.+.++. +.+.++|...-- ..++.. .+|.||+.=|.+| T Consensus 20 ~~~~~~~i~iid~~~~~-~~~i~~~l~~~g-~~~~i~~~~~~~-----------~~~~~~-------~~dGiii~Gg~~~ 79 (218) T 2vpi_A 20 FQSMEGAVVILDAGAQY-GKVIDRRVRELF-VQSEIFPLETPA-----------FAIKEQ-------GFRAIIISGGPNS 79 (218) T ss_dssp ---CTTCEEEEECSTTT-THHHHHHHHHTT-CCEEEECTTCCH-----------HHHHHH-------TCSEEEEEC---- T ss_pred CCCCCCCEEEEECCCHH-HHHHHHHHHHCC-CEEEEECCCCCH-----------HHHHHC-------CCCEEEEECCCCC T ss_conf 01488989999898459-899999977459-569998899999-----------999851-------9988999589988 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEE Q ss_conf 444220076999999974890488 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPII 244 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVi 244 (529) ..|. .+-.+.+......+||+ T Consensus 80 ~~d~---~~~~~i~~~~~~~~PiL 100 (218) T 2vpi_A 80 VYAE---DAPWFDPAIFTIGKPVL 100 (218) T ss_dssp --------CCCCCGGGGTSSCCEE T ss_pred CCCC---CCCCCCHHHHHCCCCEE T ss_conf 5434---46431266662597378 No 428 >>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:157-289) Probab=23.68 E-value=33 Score=12.44 Aligned_cols=95 Identities=13% Similarity=-0.042 Sum_probs=51.4 Q ss_pred CCCEEEEEECCCHHHHHHHHHH----HHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 6528999847842589999998----630597-58999721001111036799999999741003576777589995168 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQR----ISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~----~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) -.++|++|+.+.+..-.+-+.- +++..+ ..+.. +.++....+-..++..+-... +.+|+|+. T Consensus 18 g~~~i~~i~g~~~~~~~~R~~Gf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-----~~~~ai~~---- 84 (133) T 1jx6_A 18 KHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSA----YYTKATKQSGYDAAKASLAKH-----PDVDFIYA---- 84 (133) T ss_dssp TTCEEEEECCSTTHHHHHHHHHHHHHHHHHHCCEEEEE----ECCCSSHHHHHHHHHHHHHHC-----CCCSEEEE---- T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEE----EECCCCHHHHHHHHHHHHHCC-----CCCCEEEE---- T ss_conf 97479981599985699999999999986327885159----837999999999999975425-----66623574---- Q ss_pred CCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 8844422007699---9999974890488520577752589886 Q gi|254780791|r 219 GSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 219 GS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) .||.. +.+++.+...-=|.-||+.-+-....++ T Consensus 85 --------~~d~~a~g~~~al~~~g~~~i~ivg~D~~~~~~~~i 120 (133) T 1jx6_A 85 --------CSTDVALGAVDALAELGREDIMINGWGGGSAELDAI 120 (133) T ss_dssp --------SSHHHHHHHHHHHHHHTCTTSEEBCSBCCHHHHHHH T ss_pred --------CCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHH T ss_conf --------375999999999987489882898168989999986 No 429 >>2qyw_A Vesicle transport through interaction with T- snares 1B homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V (A:) Probab=23.47 E-value=34 Score=12.41 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=4.7 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 67776699999888 Q gi|254780791|r 279 EHLQSSLINLEARL 292 (529) Q Consensus 279 ~EL~~~L~~l~~RL 292 (529) ....+++..+.+-+ T Consensus 18 e~YE~~f~~l~a~i 31 (102) T 2qyw_A 18 EKLHEIFRGLLEDL 31 (102) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 88999999999999 No 430 >>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis} (A:) Probab=23.43 E-value=17 Score=15.00 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=30.9 Q ss_pred CEEEEEEECCCCCCCC-CCEEEEEEECCCC-EEEEEEECCCCC--CCCCCCCCCCEEEEEEEEEEECCCC---EEEEEEE Q ss_conf 1899999705435688-8627999874894-799999735210--5866814598899999966752884---3799999 Q gi|254780791|r 34 HVCVRGEISGYRGIHS-SGHAYFSLKDNHS-RIDAIIWKGTLN--KIEFLPEEGIEFLVIGKITTFPGSS---KYQIIIE 106 (529) Q Consensus 34 ~~~v~gEis~~~~~~~-sGH~Yf~lkd~~a-~i~~~~~~~~~~--~~~~~~~~G~~v~~~g~~~~y~~~g---~~ql~v~ 106 (529) .+.|.-+|.|-...+- -....|.|.|.+. +........... .....+..|.++ .|.+-|=.|.+ .|.|... T Consensus 48 fv~v~vtv~N~g~~~~~~~~~~f~l~d~dg~~y~~~~~~~~~~~~~~~~~L~PG~~~--~G~ivFeVPk~~~~~~~L~y~ 125 (159) T 3cfu_A 48 RLIIEVTXENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILXGGTLVSGKKV--TGVLSYVIPKGEQKHYTLVYN 125 (159) T ss_dssp EEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEE--EEEEEEEESTTCGGGCEEEEC T ss_pred EEEEEEEEEECCCCCEEECCCEEEEEECCCCEECCCEEECCCCCEEEEEEECCCCEE--EEEEEEEECCCCCCEEEEEEE T ss_conf 999999999788886785254189992799795231610367760522464799888--999999957999731899980 Q ss_pred E Q ss_conf 7 Q gi|254780791|r 107 S 107 (529) Q Consensus 107 ~ 107 (529) . T Consensus 126 ~ 126 (159) T 3cfu_A 126 P 126 (159) T ss_dssp H T ss_pred C T ss_conf 0 No 431 >>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:1-122,A:256-317) Probab=23.36 E-value=34 Score=12.39 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=58.8 Q ss_pred CCCEEEEEECCCHH--HH--HHHHHHHH---H-------CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 65289998478425--89--99999863---0-------59758999721001111036799999999741003576777 Q gi|254780791|r 144 IPKIIAVITSPTGA--VI--RDILQRIS---C-------RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 144 ~p~~i~vits~~~a--~~--~D~~~~~~---~-------r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) -|-+||++.+.+|. ++ ..+.+-++ + .++++++++...-....|.. .+-+.+.. - T Consensus 3 ~~i~IG~~~p~SG~~a~~~G~~~~~g~~lAv~~iNggi~G~~ielv~~D~~~~~~~a~~---~a~~li~~---------~ 70 (184) T 3i09_A 3 DSVKIGFITDXSGLYADIDGQGGLEAIKXAVADFGGKVNGKPIEVVYADHQNKADIAAS---KAREWXDR---------G 70 (184) T ss_dssp SSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHH---HHHHHHHH---------S T ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHH---HHHHHHHC---------C T ss_conf 87699998078774302288899999999999967987997889999559999899999---99999962---------8 Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH---HHHHHCCCC-CCCHH Q ss_conf 5899951688844422007699999997489048852057775258---988641237-77214 Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL---ADYAADLRA-PTPTG 269 (529) Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl---~D~VAD~Ra-~TPTa 269 (529) .|.+|+=+.+|-. -..++.......+|+|+.-....+.|- -+++-.+++ +||.. T Consensus 71 ~v~~iiG~~~S~~------~~a~~~~~~~~~vp~i~~~a~~~~l~~~~~~~~~fr~~~~~~~~~ 128 (184) T 3i09_A 71 GLDLLVGGTNSAT------ALSXNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYNRDQAS 128 (184) T ss_dssp CEEEEEECSCHHH------HHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCTSSHHH T ss_pred CCEEEEEECCCHH------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH T ss_conf 9769995055167------778777887608753344445532346677763344146124567 No 432 >>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} (A:1-25,A:210-450) Probab=23.34 E-value=34 Score=12.39 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=29.1 Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH Q ss_conf 5899972100111103679999999974100357677758999516888444220076999999 Q gi|254780791|r 172 LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529) Q Consensus 172 ~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529) ..+..+.+-|-- .+++.+++..+.. ...+|+++..=|+.....++-++.+..-+. T Consensus 95 ~~v~~~~~Dvs~---~~~~~~~~~~~~~------~~~i~~vi~nag~~~~~~~~~~~~~~~~~~ 149 (266) T 2fr1_A 95 ARTTVAACDVTD---RESVRELLGGIGD------DVPLSAVFHAAATLDDGTVDTLTGERIERA 149 (266) T ss_dssp CEEEEEECCTTC---HHHHHHHHHTSCT------TSCEEEEEECCCCCCCCCGGGCCHHHHHHH T ss_pred CEEEEEEEECCC---HHHHHHHHHHHHH------HCCCEEEEEECCCCCCCCHHHCCHHHHHHH T ss_conf 738999534789---8999999999997------488129998677456763011138899999 No 433 >>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} (A:) Probab=23.34 E-value=34 Score=12.39 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=50.9 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) -+.||-||-.. +....++...-..+++++.... +-..|+..+... .||+||+- .. T Consensus 7 ~~~rvLiVDd~--~~~~~~l~~~l~~~G~~v~~a~----------~~~~Al~~l~~~-------~~dlillD------~~ 61 (147) T 2zay_A 7 KWWRIMLVDTQ--LPALAASISALSQEGFDIIQCG----------NAIEAVPVAVKT-------HPHLIITE------AN 61 (147) T ss_dssp -CEEEEEECTT--GGGGHHHHHHHHHHTEEEEEES----------SHHHHHHHHHHH-------CCSEEEEE------SC T ss_pred CCCEEEEEECC--HHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEEE------CC T ss_conf 99889999799--9999999999998799999988----------889999998604-------77788750------44 Q ss_pred HHHCCHHHHHHHHHH----CCCEEEEEECCCCCC Q ss_conf 220076999999974----890488520577752 Q gi|254780791|r 224 LWHFNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529) Q Consensus 224 L~~FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529) |=-.|-.++++.|-+ ..+|||-=-|+..+. T Consensus 62 mp~~dG~~l~~~ir~~~~~~~iPii~ls~~~~~~ 95 (147) T 2zay_A 62 MPKISGMDLFNSLKKNPQTASIPVIALSGRATAK 95 (147) T ss_dssp CSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHH T ss_conf 0356767899999838023899689981789999 No 434 >>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} (B:119-258) Probab=23.20 E-value=34 Score=12.37 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=63.2 Q ss_pred CCCCCEEEEEECCC-HHHH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCC Q ss_conf 02652899984784-2589-99999863059758999721001111036799999999741003576777589995-168 Q gi|254780791|r 142 PFIPKIIAVITSPT-GAVI-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA-RGG 218 (529) Q Consensus 142 P~~p~~i~vits~~-~a~~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~-RGG 218 (529) |.-+.+|-+.|.++ .-.+ -.++..+-+..+++++.....+ .+.++++++... ++|+|.|. .-+ T Consensus 2 ~~~~~~vl~~~~~gd~H~lG~~~va~~lr~~G~~V~~lG~~~----p~~~l~~~~~~~----------~~d~V~lS~~~~ 67 (140) T 2i2x_B 2 PKTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDV----PAEEVLAAVQKE----------KPIMLTGTALMT 67 (140) T ss_dssp CCCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEEC----CSHHHHHHHHHH----------CCSEEEEECCCT T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEECCC T ss_conf 565430466314886766899999999997799089658889----879999999971----------788598652345 Q ss_pred CCHHHHHHCCHHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHH Q ss_conf 884442200769999999748--90488520577752589886412377721456763 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANS--SIPIISAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~~--~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529) .+..+. ..+++.+-+. .+||+.|=|.-+..-...+=+|.-++..+.+.+.+ T Consensus 68 ~~~~~~-----~~~~~~lr~~~~~~~v~vGG~~~~~~~~~~~g~d~~~~~~~~~~~~~ 120 (140) T 2i2x_B 68 TTMYAF-----KEVNDMLLENGIKIPFACGGGAVNQDFVSQFALGVYGEEAADAPKIA 120 (140) T ss_dssp TTTTHH-----HHHHHHHHTTTCCCCEEEESTTCCHHHHHTSTTEEECSSTTHHHHHH T ss_pred CCHHHH-----HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCEECCCHHHHHHHH T ss_conf 325889-----99999998469997399889869999999829884717999999999 No 435 >>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} (A:1-157,A:293-328) Probab=23.20 E-value=34 Score=12.37 Aligned_cols=103 Identities=18% Similarity=0.142 Sum_probs=55.7 Q ss_pred CCCCCCCC-CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEE---CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 00163102-65289998478425899999986305975899-972---10011110367999999997410035767775 Q gi|254780791|r 136 QHKNPIPF-IPKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFP---VKVQGDECPKEIANAILQLNTLKEGRTCPRPD 210 (529) Q Consensus 136 ~~k~~lP~-~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p---~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D 210 (529) +.+++.|. -.+.|+.+=-.+|-=-+==-.....+-+..++ +-+ +...|.+...+ ....+..+ +| T Consensus 34 ~~~~~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~vi~l~~~~~s~~~~~Esi~D---ta~vls~y--------~D 102 (193) T 3grf_A 34 NPAKYTARAANKTLLAFFAKPSLRTRVSLETAMTRLGGHAIYYELGANSNVGGKETVQD---TAEVFSRM--------VD 102 (193) T ss_dssp CGGGGTTTTTTCEEEEEESSCCHHHHHHHHHHHHHHTCEEEEEEC----------CHHH---HHHHHTTT--------CS T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCHHHCCCCCHHHHH---HHHHHHCC--------CC T ss_conf 73445656689889999668971079999999998599889877531111577526999---99998333--------76 Q ss_pred EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE-ECCC-CCCHHHHHH Q ss_conf 899951688844422007699999997489048852-0577-752589886 Q gi|254780791|r 211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA-IGHE-TDWTLADYA 259 (529) Q Consensus 211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg-IGHE-~D~Tl~D~V 259 (529) + |++|+ |++..+-.....+.+|||.| -||+ .=-.|+|+- T Consensus 103 ~-iviR~---------~~~~~~~~~a~~s~vPVINag~g~~HPtQaLaDl~ 143 (193) T 3grf_A 103 I-CTARL---------ATKEMMREMAQHASVPCINALDDFGHPLQMVCDFM 143 (193) T ss_dssp E-EEEEC---------SSHHHHHHHHHHCSSCEEESSCSSCCHHHHHHHHH T ss_pred E-EEEEC---------CCHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHH T ss_conf 5-66640---------20212788764178614637643247999999899 No 436 >>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} (A:) Probab=23.08 E-value=34 Score=12.35 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=19.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999999999999999999999999999988716 Q gi|254780791|r 420 IKKLITRIEFILSHKIKSCHTSVSITTRILQSF 452 (529) Q Consensus 420 l~~l~~rL~~~~~~~L~~~~~rL~~l~~~L~sl 452 (529) .......|..-+...|..++.++..+.++|... T Consensus 201 k~~~E~~L~~KF~~lLNeKK~KIR~L~~~L~~a 233 (246) T 1z56_A 201 LETRDERTRAMMVTLLNEKKKKIRELHEILRQN 233 (246) T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHGGGTTTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 998899999999999717789999999999975 No 437 >>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} (A:1-131) Probab=22.94 E-value=34 Score=12.33 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=51.5 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) .||-|| .+......+++.+=..|++.+.... +--+|++.+... .||+||+= -.|= T Consensus 8 ~~ILiV--dDd~~~~~~l~~~L~~~g~~v~~a~----------~~~~al~~~~~~-------~~dliilD------~~lp 62 (131) T 1ys7_A 8 PRVLVV--DDDSDVLASLERGLRLSGFEVATAV----------DGAEALRSATEN-------RPDAIVLD------INMP 62 (131) T ss_dssp CEEEEE--CSCHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHS-------CCSEEEEE------SSCS T ss_pred CEEEEE--ECCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCEEEEEE------ECCC T ss_conf 879999--7999999999999997899999989----------999999999858-------98299973------0233 Q ss_pred HCCHHHHHHHHHH----CCCEEEEEECCCCCC Q ss_conf 0076999999974----890488520577752 Q gi|254780791|r 226 HFNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529) Q Consensus 226 ~FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529) ..|-.++++.+-. .|++++|+.+...+. T Consensus 63 ~~~g~e~~~~ir~~~~~~~ii~~t~~~~~~~~ 94 (131) T 1ys7_A 63 VLDGVSVVTALRAMDNDVPVCVLSARSSVDDR 94 (131) T ss_dssp SSCHHHHHHHHHHTTCCCCEEEEECCCTTTCC T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHH T ss_conf 33322210010014553331235578999999 No 438 >>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} (A:1-95) Probab=22.88 E-value=26 Score=13.35 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=27.7 Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC Q ss_conf 5168884442200769999999748904885205777525898864123 Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR 263 (529) Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R 263 (529) .+|.||++++..=+.++|+. |-|||-.+=-.|.++.++.+ T Consensus 53 ~~~~~s~e~i~~As~e~L~~---------i~Gig~~~A~~I~~~~~~~~ 92 (95) T 1pzn_A 53 EAGYDTLEAIAVASPIELKE---------VAGISEGTALKIIQAARKAA 92 (95) T ss_dssp TTTCCSHHHHHTCCHHHHHH---------HHCCCHHHHHHHHHHHHHHC T ss_pred HCCCCCHHHHHHCCHHHHHH---------HHCCCHHHHHHHHHHHHHHC T ss_conf 85997199998289999997---------54989999999999998733 No 439 >>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} (A:1-220) Probab=22.80 E-value=35 Score=12.31 Aligned_cols=11 Identities=18% Similarity=0.151 Sum_probs=3.7 Q ss_pred HHHHHHHHHHC Q ss_conf 99997654012 Q gi|254780791|r 122 KRKKKLLEEGL 132 (529) Q Consensus 122 ~lk~~L~~eGl 132 (529) ++.+.|.+-|+ T Consensus 118 ~l~~~l~~~g~ 128 (220) T 2i0k_A 118 AIVTELQKHDL 128 (220) T ss_dssp HHHHHHHHTTE T ss_pred HHHHHHHHCCC T ss_conf 99999985366 No 440 >>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} (A:1-18,A:107-240) Probab=22.75 E-value=35 Score=12.30 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=81.7 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999976540122610016310265289998478425899999986305975899972100111103679999999974 Q gi|254780791|r 120 LEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNT 199 (529) Q Consensus 120 ~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~ 199 (529) ..++.++|.+.|+ +++|+|+......+.+++..-..+...++-.....+++-.+..+..++++.+- T Consensus 27 v~e~L~~Lk~~G~--------------~l~i~Tn~~~~~~~~~l~~~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~g~ 92 (152) T 2hi0_A 27 ILDLXKNLRQKGV--------------KLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIRRKPAPDXTSECVKVLGV 92 (152) T ss_dssp HHHHHHHHHHTTC--------------EEEEEEEEEHHHHHHHHHHHSTTTCSEEEEECTTSCCTTSSHHHHHHHHHHTC T ss_pred HHHHHHHHHHCCC--------------CCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHCCC T ss_conf 4689999864124--------------52113567367889998751111010101122345443321001457987197 Q ss_pred HCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEE-EEECCCCCCHHHHHHHCCCCCCCHHHHHHH Q ss_conf 100357677758999516888444220076999999974890488-520577752589886412377721456763 Q gi|254780791|r 200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPII-SAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529) Q Consensus 200 ~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVi-sgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529) .. -++++|+ |...=+++--++.++.| ..=|+..-.-+..+=+|.-..+|....+++ T Consensus 93 ~p-------~~~i~VG------------D~~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~pd~ii~s~~el~~~l 149 (152) T 2hi0_A 93 PR-------DKCVYIG------------DSEIDIQTARNSEXDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEEAI 149 (152) T ss_dssp CG-------GGEEEEE------------SSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCCCEECSHHHHHHHH T ss_pred CC-------CCCEECC------------CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEECCHHHHHHHH T ss_conf 51-------2211026------------887789999986994999888989878897689999989999999985 No 441 >>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp} (A:) Probab=22.74 E-value=35 Score=12.30 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=51.6 Q ss_pred CCCCCCEEEEEECCCHHHHHHHH-HHHHH-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC Q ss_conf 10265289998478425899999-98630-59758999721001111036799999999741003576777589995168 Q gi|254780791|r 141 IPFIPKIIAVITSPTGAVIRDIL-QRISC-RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529) Q Consensus 141 lP~~p~~i~vits~~~a~~~D~~-~~~~~-r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529) ++.-+.+|-||--. .....++ +.+++ .+.++|..... -.+|+..+..... .....||+|++=- T Consensus 3 ~~~~~~~ILiVdDd--~~~~~~i~~~L~~~g~~~~v~~a~~----------g~~al~~l~~~~~-~~~~~pdlIilD~-- 67 (143) T 2qvg_A 3 LAADKVDILYLEDD--EVDIQSVERVFHKISSLIKIEIAKS----------GNQALDXLYGRNK-ENKIHPKLILLDI-- 67 (143) T ss_dssp ----CCSEEEECCC--HHHHHHHHHHHHHHCTTCCEEEESS----------HHHHHHHHHTCTT-CCCCCCSEEEEET-- T ss_pred CCCCCCEEEEEECC--HHHHHHHHHHHHHCCCCEEEEEECC----------HHHHHHHHHHHHH-HCCCCCCEEEECC-- T ss_conf 88888989999799--9999999999997599749999778----------2899999971103-2147888899728-- Q ss_pred CCHHHHHHCCHHHHHHHHHH----CCCEEE--EEECCCCCCHHHH Q ss_conf 88444220076999999974----890488--5205777525898 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIAN----SSIPII--SAIGHETDWTLAD 257 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~~----~~iPVi--sgIGHE~D~Tl~D 257 (529) .|=--|-.++++.|-+ .++||| ||-|.+.|..-+- T Consensus 68 ----~mP~~dG~el~~~ir~~~~~~~~pviils~~~~~~~~~~~~ 108 (143) T 2qvg_A 68 ----NIPKXNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFE 108 (143) T ss_dssp ----TCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHT T ss_pred ----CCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHH T ss_conf ----88897579999999857666899399997879999999999 No 442 >>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} (A:55-65,A:336-502) Probab=22.72 E-value=35 Score=12.29 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=41.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCH Q ss_conf 999999976540122610016310265289998478425899999986305-97589997210011110 Q gi|254780791|r 119 ALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR-FPLRVIIFPVKVQGDEC 186 (529) Q Consensus 119 ~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r-~p~~~~~~p~~vQG~~a 186 (529) .-..++++|.+-|.|...- +-|..|--+.-+.-.++--+.|+.+.+.++ |.+..+.||..+++... T Consensus 26 ~a~yl~~~L~~~~~~~i~~--~~~~~~vv~~~~~~~~~~~~~~i~~~L~~~G~~~~~~~~P~~~~~~~~ 92 (178) T 3hbx_A 26 NMIVLREGLEKTERFNIVS--KDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITV 92 (178) T ss_dssp HHHHHHHHHHTTTCEEECS--CSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEE T ss_pred HHHHHHHHHHHCCCEEEEE--CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCEE T ss_conf 9999999997489959982--799840899974799887899999999985987415778986456357 No 443 >>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} (A:62-304) Probab=22.69 E-value=35 Score=12.29 Aligned_cols=98 Identities=10% Similarity=-0.043 Sum_probs=58.0 Q ss_pred CEEEEEEECCC----CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHCCH----HHHHHHHH Q ss_conf 75899972100----1111036799999999741003576777589995168884-----44220076----99999997 Q gi|254780791|r 171 PLRVIIFPVKV----QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHFND----EMIVRAIA 237 (529) Q Consensus 171 p~~~~~~p~~v----QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~FN~----e~laraI~ 237 (529) |+-|+.....+ .|..+..-++++++.+++.+ .-+|.++-.||.. |-++.+-. -.-..... T Consensus 45 ~v~via~d~~~~gGs~~~~~~~K~~r~~~~a~~~~-------iPlv~l~dt~G~~~~~~~e~~~~~~~~~~~~~~~~~~~ 117 (243) T 1pix_A 45 WCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-------VPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELN 117 (243) T ss_dssp EEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-------CCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHH T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC-------CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999986821150878789899999999999829-------99899955788766651344100545649999999984 Q ss_pred HCCCEEEEEECCCCCCH--HHHHHHCCCCCCCHHHHHHHC Q ss_conf 48904885205777525--898864123777214567633 Q gi|254780791|r 238 NSSIPIISAIGHETDWT--LADYAADLRAPTPTGAAEMAV 275 (529) Q Consensus 238 ~~~iPVisgIGHE~D~T--l~D~VAD~Ra~TPTaAAElav 275 (529) .+.+|+|+.|--..=-- ..=..+|....+|++.--++- T Consensus 118 ~~~vp~i~vv~g~~~gg~a~~~~~~d~~~~~~~a~i~~~g 157 (243) T 1pix_A 118 QLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGG 157 (243) T ss_dssp HTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCC T ss_pred CCCCCEEEECCCCCCCCCCHHHHHCEEEEEECCEEEEECC T ss_conf 6998567503578676420110002168872443799507 No 444 >>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} (A:) Probab=22.55 E-value=34 Score=12.38 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=4.7 Q ss_pred CCEEEEEEEC Q ss_conf 8627999874 Q gi|254780791|r 50 SGHAYFSLKD 59 (529) Q Consensus 50 sGH~Yf~lkd 59 (529) .|+.||.||| T Consensus 73 ~gk~y~~Lk~ 82 (82) T 1nha_A 73 NDKMHFSLKE 82 (82) T ss_dssp TTEEEEECCC T ss_pred CCEEEEEECC T ss_conf 7804887349 No 445 >>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis} (A:1-111) Probab=22.50 E-value=16 Score=15.33 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=23.5 Q ss_pred EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCC Q ss_conf 89999970543568886279998748947999997352 Q gi|254780791|r 35 VCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGT 72 (529) Q Consensus 35 ~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~ 72 (529) +..-|-.|||......-|+||| +.+.+++|.-. T Consensus 25 Ll~pg~~sny~~~~~~nhvYfT-----~~ld~A~wgAE 57 (111) T 2hw2_A 25 RLVPGRESNFEAGRIMNHIYIT-----QTLDAAVWGAE 57 (111) T ss_dssp CCTTCEECSCCBCSSSTTCBCS-----CEEEESBHHHH T ss_pred CCCCCCCCCCCCCCCCCCCEEE-----EEEEECCCCHH T ss_conf 7776540478634567675235-----79985143057 No 446 >>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} (A:) Probab=22.42 E-value=35 Score=12.25 Aligned_cols=95 Identities=18% Similarity=0.136 Sum_probs=57.8 Q ss_pred CCCCEEEEEECCCHHHHHHH-----HHHHHHC-CC-EEEEE--EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE Q ss_conf 26528999847842589999-----9986305-97-58999--7210011110367999999997410035767775899 Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDI-----LQRISCR-FP-LRVII--FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII 213 (529) Q Consensus 143 ~~p~~i~vits~~~a~~~D~-----~~~~~~r-~p-~~~~~--~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii 213 (529) .-|.|||||.|.=-.-+-|= +..+++. .+ .++.+ .|-.+ ||--+++.+-+.. +||.+| T Consensus 9 ~~~~riaIV~s~fn~~i~~~ll~ga~~~l~~~g~~~~~i~v~~VPGa~-------EiP~a~~~l~~s~------~~davI 75 (157) T 2obx_A 9 YETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAY-------EIPLHARTLAETG------RYGAVL 75 (157) T ss_dssp CCCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGG-------GHHHHHHHHHHHT------CCSEEE T ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHH-------HHHHHHHHHHHCC------CCCEEE T ss_conf 778989999802879999999999999999859974465799957788-------8899999998513------666488 Q ss_pred ----EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEECCC Q ss_conf ----95168884442200-76999999974890488520577 Q gi|254780791|r 214 ----LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIGHE 250 (529) Q Consensus 214 ----i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIGHE 250 (529) |+||+=.--|..|= =...|.+.=....+||+.||=+. T Consensus 76 aLG~VIrG~T~H~~~V~~~v~~gl~~v~l~~~~PV~~GvLt~ 117 (157) T 2obx_A 76 GTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTP 117 (157) T ss_dssp EEEECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEEECB T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 888776488627689999999999999732499679996587 No 447 >>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* (C:162-204) Probab=22.38 E-value=35 Score=12.24 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=20.0 Q ss_pred EECCCCCHHH-HHHCCHHHHHHHHHHCC Q ss_conf 9516888444-22007699999997489 Q gi|254780791|r 214 LARGGGSIED-LWHFNDEMIVRAIANSS 240 (529) Q Consensus 214 i~RGGGS~eD-L~~FN~e~laraI~~~~ 240 (529) |..|.+..++ -+||||+++...+...+ T Consensus 5 v~~gk~~~~~~~Y~y~d~El~~~l~~~~ 32 (43) T 3k9f_C 5 MSKGKGKKEEVAYAWTDGELEELRKQFG 32 (43) T ss_dssp EEC-CGGGCCEEEECSHHHHHHHHHHSC T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9854653045776651146799999837 No 448 >>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} (A:1520-1661) Probab=22.19 E-value=35 Score=12.21 Aligned_cols=70 Identities=11% Similarity=0.159 Sum_probs=43.1 Q ss_pred EEEEEEECCCCCCCCCCEEEEEEE------CCCCEE---EEEEECCC-CCCCCCCCCCCCEEEEEEEEE-EECCCCEEEE Q ss_conf 899999705435688862799987------489479---99997352-105866814598899999966-7528843799 Q gi|254780791|r 35 VCVRGEISGYRGIHSSGHAYFSLK------DNHSRI---DAIIWKGT-LNKIEFLPEEGIEFLVIGKIT-TFPGSSKYQI 103 (529) Q Consensus 35 ~~v~gEis~~~~~~~sGH~Yf~lk------d~~a~i---~~~~~~~~-~~~~~~~~~~G~~v~~~g~~~-~y~~~g~~ql 103 (529) +.++|.|-+.. ..+++.+|+.+ .....+ .-..|-.. .=..+..++.|.+.++.|+.+ .|...+++++ T Consensus 22 yv~kv~V~~~~--~~~~~~~~~v~V~~V~K~~~~~i~~g~~~~~~~~~~C~cp~~L~~g~~YLImG~~~~~~~~~~~~~~ 99 (142) T 2b39_A 22 YVYKTRLIQKK--LEDDFDEYIMVIENIIKSGSDEVQVKQERKFISHIKCREALKLKEGAHYLVWGVSSDLWGEKPKISY 99 (142) T ss_dssp EEEEEEEEEEE--CCSSEEEEEEEEEEECSCCTTCCCSSSCCEEEEETTTHHHHCCCTTCEEEEEEESTTBCSBTTBCCE T ss_pred EEEEEEEEEEE--CCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEECCCCCEEE T ss_conf 89999999997--1478089999998865357764689988999976877841156679889998056756078985699 Q ss_pred EEE Q ss_conf 999 Q gi|254780791|r 104 IIE 106 (529) Q Consensus 104 ~v~ 106 (529) +++ T Consensus 100 il~ 102 (142) T 2b39_A 100 IIG 102 (142) T ss_dssp ECC T ss_pred ECC T ss_conf 908 No 449 >>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} (A:1-167,A:265-324) Probab=22.17 E-value=36 Score=12.21 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=59.3 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 28999847842589999998630597-58999721001111036799999999741003576777589995168884442 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529) -+||...+...-.+.++++.+..+|| +.+.+. || .+.+|.+++.. ..+|+.|........+|| T Consensus 95 l~Ia~~~t~a~~~lp~vi~~f~~~~P~v~l~l~----~~--~~~~i~e~L~~----------g~~Di~I~~~~~~~~~~L 158 (227) T 1al3_A 95 LYVATTHTQARYALPGVIKGFIERYPRVSLHMH----QG--SPTQIAEAVSK----------GNADFAIATEALHLYDDL 158 (227) T ss_dssp EEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEE----EC--CHHHHHHHHHT----------TCCSEEEESSCCCTTSCE T ss_pred CEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEE----CC--CHHHHHHHHHC----------CCCEECCCCCCCCCCCCE T ss_conf 224326037877789999999753995389960----48--98999999975----------995011344666666530 Q ss_pred HHCCHHHHHHHHHHCC-CEEEEEECCCCCCHHHHHHHC Q ss_conf 2007699999997489-048852057775258988641 Q gi|254780791|r 225 WHFNDEMIVRAIANSS-IPIISAIGHETDWTLADYAAD 261 (529) Q Consensus 225 ~~FN~e~laraI~~~~-iPVisgIGHE~D~Tl~D~VAD 261 (529) -.+= .+.-+ =|-.|-||--.+.-|=.|+=| T Consensus 159 v~lp-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227) T 1al3_A 159 VMLP-------CYHWNFSHSTTKIGFRRSTFLRSYMYD 189 (227) T ss_dssp EEEE-------EEEECBCCEEEEEEEETTCCCCHHHHH T ss_pred EEEE-------EEECCCCCCEEEEEEECCCCCCHHHHH T ss_conf 5888-------420117654799999698857999999 No 450 >>1yzf_A Lipase/acylhydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Enterococcus faecalis V583} (A:) Probab=22.14 E-value=36 Score=12.20 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=29.9 Q ss_pred CEEEEEECCC---------HHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCCCCCCEEEE Q ss_conf 2899984784---------25899999-986305975899972100111103679999999-974100357677758999 Q gi|254780791|r 146 KIIAVITSPT---------GAVIRDIL-QRISCRFPLRVIIFPVKVQGDECPKEIANAILQ-LNTLKEGRTCPRPDIIIL 214 (529) Q Consensus 146 ~~i~vits~~---------~a~~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~-~~~~~~~~~~~~~D~iii 214 (529) +||.+|-..- +.++.+.+ ..+..+++-.+.+....+-|....... ..+.. +.. ..+|+||| T Consensus 2 k~i~~iGDS~t~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~g~~~~~~~-~~~~~~~~~-------~~~d~vii 73 (195) T 1yzf_A 2 RKIVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGL-KRLNKEVLI-------EKPDEVVI 73 (195) T ss_dssp EEEEEEESHHHHCBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHH-HHHHHHTGG-------GCCSEEEE T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH-HHHHHHHCC-------CCCCEEEE T ss_conf 8999992523168388887640899999998862688748998420441023455-431123115-------56666898 Q ss_pred ECCCC Q ss_conf 51688 Q gi|254780791|r 215 ARGGG 219 (529) Q Consensus 215 ~RGGG 219 (529) .=|+- T Consensus 74 ~~G~N 78 (195) T 1yzf_A 74 FFGAN 78 (195) T ss_dssp ECCTT T ss_pred ECCCC T ss_conf 42344 No 451 >>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A* (A:67-150) Probab=22.12 E-value=36 Score=12.20 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=15.5 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 2299999999999740017189999970543 Q gi|254780791|r 15 YSVSELSYHLKHIVESNLSHVCVRGEISGYR 45 (529) Q Consensus 15 ~svs~l~~~i~~~l~~~~~~~~v~gEis~~~ 45 (529) +|+.|+...|+..+..-+.+--|.-++.+|+ T Consensus 53 lT~~e~~~~I~~~l~~~~~~p~v~V~v~~~r 83 (84) T 2j58_A 53 KTVSQVRQDITSRLTTYIESPQVDVSIAAFR 83 (84) T ss_dssp CCHHHHHHHHHHHHTTTSSSCCEEEEEEECC T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9899999999999986515865068740123 No 452 >>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:1-146) Probab=22.09 E-value=34 Score=12.35 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=18.1 Q ss_pred HHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6412377721456763323467776699999888778998889 Q gi|254780791|r 259 AADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIK 301 (529) Q Consensus 259 VAD~Ra~TPTaAAElavp~~~EL~~~L~~l~~RL~~a~~~~l~ 301 (529) .+.++|.|++-+..+-..+..++...-.++...+.+.+.+.+. T Consensus 92 ~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 134 (146) T 3dv8_A 92 EVTIEAEKDTDLWIIPAEIYKGIXKDSAPVANYTNELXATRFS 134 (146) T ss_dssp CCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 4310122123324476999986641185256689999999999 No 453 >>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis} (A:28-246) Probab=22.03 E-value=36 Score=12.19 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=24.7 Q ss_pred CEEEEEECCCCCCHHH-HHHH-----CCCCCCCHHHHHHH Q ss_conf 0488520577752589-8864-----12377721456763 Q gi|254780791|r 241 IPIISAIGHETDWTLA-DYAA-----DLRAPTPTGAAEMA 274 (529) Q Consensus 241 iPVisgIGHE~D~Tl~-D~VA-----D~Ra~TPTaAAEla 274 (529) -||+..+||-+|.--+ .+|. ..|-|+||..|-.. T Consensus 159 kPiyVS~Gh~i~le~A~~iv~~~~~~~~RlPEP~R~Ad~~ 198 (219) T 3ga2_A 159 KPIFLSCGNYIDLDSSYQITXSLINQESRLPIPVRLADLE 198 (219) T ss_dssp CCEEEEEEESSCHHHHHHHHHHTCCTTCSSCHHHHHHHHH T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 8999828978799999999999834899898178999999 No 454 >>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243) Probab=22.03 E-value=36 Score=12.19 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=44.3 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH Q ss_conf 78425899999986305975899972100-11110367999999997410035767775899951688844422007699 Q gi|254780791|r 153 SPTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM 231 (529) Q Consensus 153 s~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529) .++-+++-|+...+.+.-+..+++|..+. -|..-+.+.+.++... +.++-+-=+.| |-+. T Consensus 108 ~~~~~~i~~~~~~ia~a~~~pi~iyn~P~~~g~~~~~~~~~~l~~~-----------~~v~giK~~~~--------~~~~ 168 (243) T 2rfg_A 108 RPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAAL-----------PRIVGVKDATT--------DLAR 168 (243) T ss_dssp CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTS-----------TTEEEEEECSC--------CTTH T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC-----------CCEEEEEECCC--------CCCH T ss_conf 9899999999999975379858999457534688899999998407-----------99899740333--------3006 Q ss_pred HHHHHHHCC--CEEEEEECCCCCCHHHHHH Q ss_conf 999997489--0488520577752589886 Q gi|254780791|r 232 IVRAIANSS--IPIISAIGHETDWTLADYA 259 (529) Q Consensus 232 laraI~~~~--iPVisgIGHE~D~Tl~D~V 259 (529) +.+.+...+ +-|++|- |..+++.. T Consensus 169 ~~~~~~~~~~~~~~~~g~----d~~~~~~l 194 (243) T 2rfg_A 169 ISRERMLINKPFSFLSGD----DMTAIAYN 194 (243) T ss_dssp HHHHHTTCCSCCEEEESC----GGGHHHHH T ss_pred HHHHHHHCCCCCCEECCC----CCCCHHHH T ss_conf 777654216785142566----42201355 No 455 >>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri} (A:86-215) Probab=21.99 E-value=36 Score=12.18 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=55.3 Q ss_pred CCCEEEEEECCC-HHHH-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE---CCC Q ss_conf 652899984784-2589-99999863059758999721001111036799999999741003576777589995---168 Q gi|254780791|r 144 IPKIIAVITSPT-GAVI-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA---RGG 218 (529) Q Consensus 144 ~p~~i~vits~~-~a~~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~---RGG 218 (529) -..+|-+.|.++ .-.+ -.++..+-++++++++...+.+ .++++++++..- ++|+|.|. .-+ T Consensus 6 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~V~~LG~~~----p~e~l~~~~~~~----------~~d~V~ls~S~~~~ 71 (130) T 3ezx_A 6 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDV----LNENVVEEAAKH----------KGEKVLLVGSALMT 71 (130) T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSC----CHHHHHHHHHHT----------TTSCEEEEEECSSH T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEEECCCC T ss_conf 6773689856997778999999999997799799788899----999999999981----------98804787424565 Q ss_pred CCHHHHHHCCHHHHHHHHH----HCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHH Q ss_conf 8844422007699999997----4890488520577752589886412377721456763 Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIA----NSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529) Q Consensus 219 GS~eDL~~FN~e~laraI~----~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529) .+.++++ .+++.+- .-.+||+.|=..=+..-.--.=+|.-++..+.|.+++ T Consensus 72 ~~~~~~~-----~~~~~l~~~~~~~~i~v~vGG~~~~~~~~~~~Gad~~~~~~~~~~~~~ 126 (130) T 3ezx_A 72 TSMLGQK-----DLMDRLNEEKLRDSVKCMFGGAPVSDKWIEEIGADATAENAAEAAKVA 126 (130) T ss_dssp HHHTHHH-----HHHHHHHHTTCGGGSEEEEESSSCCHHHHHHHTCCBCCSSHHHHHHHH T ss_pred CCHHHHH-----HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCEEECCHHHHHHHH T ss_conf 3369899-----999999981888899499889028999999839887807999999999 No 456 >>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix K1} (A:) Probab=21.89 E-value=36 Score=12.17 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=50.6 Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH Q ss_conf 98478425899999986305975899972100111103679999999974100357677758999516888444220076 Q gi|254780791|r 150 VITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND 229 (529) Q Consensus 150 vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~ 229 (529) +|+..+.....+....+....+-.+..+.+-|.=+++...++..+... ...+|++|=.=|++...++.-+++ T Consensus 35 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--------~g~idilinnAg~~~~~~~~~~~~ 106 (260) T 2z1n_A 35 LLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD--------LGGADILVYSTGGPRPGRFMELGV 106 (260) T ss_dssp EEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH--------TTCCSEEEECCCCCCCBCGGGCCH T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH--------HCCCEEEECCCCCCCCCCHHHHHH T ss_conf 999799899999999987424797299997878999999999999999--------689158722335777886676657 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780791|r 230 EMIVRAI 236 (529) Q Consensus 230 e~laraI 236 (529) |..-+.+ T Consensus 107 e~~~~~~ 113 (260) T 2z1n_A 107 EDWDESY 113 (260) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 7653000 No 457 >>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:59-159,A:294-316) Probab=21.84 E-value=36 Score=12.16 Aligned_cols=96 Identities=13% Similarity=0.149 Sum_probs=59.2 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) +.||||++. +..-+.+|++-+.+ ..++.+.++++.= .+..-..+++.+.. ..+|.||++-... T Consensus 3 ~~Igvivp~~~~pf~~~ii~gie~~a~~~Gy~l~i~~t~~----~~~~e~~~i~~l~~-------~~vdGiIi~~~~~-- 69 (124) T 2hsg_A 3 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQ----NQDKELHLLNNMLG-------KQVDGIIFMSGNV-- 69 (124) T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCS----HHHHHHHHHHHTSC-------CSSCCEEECCSSC-- T ss_pred EEEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEEEECCCC----CHHHHHHHHHHHHH-------CCCCEEEECCCCC-- T ss_conf 2899984114674310233124221111332035411467----75889999987763-------2753697214431-- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC Q ss_conf 44220076999999974890488520577752589886412 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL 262 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~ 262 (529) +........+..+|||. +|...+..-+++|.++ T Consensus 70 -------~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V~~~ 102 (124) T 2hsg_A 70 -------TEEHVEELKKSPVPVVL-AASIESTNQIPSVTIM 102 (124) T ss_dssp -------CHHHHHHHTTSSSCEEE-ESCCCSCTTSCEEEEH T ss_pred -------HHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCH T ss_conf -------03456665310022333-2234787554423569 No 458 >>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:1-101,A:232-277) Probab=21.66 E-value=36 Score=12.13 Aligned_cols=87 Identities=16% Similarity=0.101 Sum_probs=57.1 Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 5289998478-42589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) ...||||.+. +..-+.++++.+.+ ..++.++++++.-.-+.. ...++|.|||.-. T Consensus 8 s~~Igviip~lsnpff~~ii~gI~~~a~~~Gy~lli~~s~~~~~~l------------------~~~~vDGIIi~~~--- 66 (147) T 3cs3_A 8 TNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFI------------------PEKMVDGAIILDW--- 66 (147) T ss_dssp CCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCC------------------CTTTCSEEEEECT--- T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHH------------------HHCCCCEEECCCC--- T ss_conf 9989999178988899999999999999859989998176889999------------------9719774201132--- Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH Q ss_conf 444220076999999974890488520577752589886 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529) ..+....+.+.+..+|||. ++...+..-+++| T Consensus 67 ------~~~~~~i~~l~~~~IPvV~-id~~~~~~~i~~V 98 (147) T 3cs3_A 67 ------TFPTKEIEKFAERGHSIVV-LDRTTEHRNIRQV 98 (147) T ss_dssp ------TSCHHHHHHHHHTTCEEEE-SSSCCCSTTEEEE T ss_pred ------CHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCEE T ss_conf ------0018999875214887432-2233335665301 No 459 >>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} (A:1-59,A:163-323) Probab=21.65 E-value=36 Score=12.13 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=51.0 Q ss_pred CCCCCCCH-HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH-------CCCEEEEEECCC Q ss_conf 10011110-3679999999974100357677758999516888444220076999999974-------890488520577 Q gi|254780791|r 179 VKVQGDEC-PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN-------SSIPIISAIGHE 250 (529) Q Consensus 179 ~~vQG~~a-~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~-------~~iPVisgIGHE 250 (529) -+|.|... +.||++.+.. .+|.||+.=|+|+.- -.+++..-+ .+.|-+.||--+ T Consensus 58 PtieG~~Tia~EI~eQl~~-----------~pD~ivvpvG~Gg~~-------~Gi~~g~~el~~~g~i~~~p~i~gVq~~ 119 (220) T 2zsj_A 58 PTIEGQKTAAFEICDTLGE-----------APDYHFIPVGNAGNI-------TAYWKGFKIYYEEGKITKLPRMMGWQAE 119 (220) T ss_dssp TTHHHHTHHHHHHHHHHSS-----------CCSEEEEECSSSHHH-------HHHHHHHHHHHHTTSCSSCCEEEEEEET T ss_pred CCHHHHHHHHHHHHHHCCC-----------CCCEEEEECCCCHHH-------HHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 7678888999999997499-----------998899803765349-------9999999985755650223664322324 Q ss_pred CCCHHHHHHHCCCCCCCHHHHHHHCCCHH Q ss_conf 75258988641237772145676332346 Q gi|254780791|r 251 TDWTLADYAADLRAPTPTGAAEMAVPVKE 279 (529) Q Consensus 251 ~D~Tl~D~VAD~Ra~TPTaAAElavp~~~ 279 (529) -..++......-...|.+.+..+..|... T Consensus 120 g~~~~~~~~~~~~~~t~a~~~~i~~~~~~ 148 (220) T 2zsj_A 120 GAAPIVKGYPIKNPQTIATAIKIGNPYSW 148 (220) T ss_dssp TBCHHHHTSCCSSCCCSCGGGCCSSCTTH T ss_pred CCCHHCCCCCCCCCCEECCCCCCCCCCCC T ss_conf 46100146746677431022013678665 No 460 >>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} (B:56-304) Probab=21.63 E-value=36 Score=12.13 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=75.1 Q ss_pred HHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCC----------------CEEEEEEECCC----CCCCHHHH Q ss_conf 01226100163102652899984784258999999863059----------------75899972100----11110367 Q gi|254780791|r 130 EGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRF----------------PLRVIIFPVKV----QGDECPKE 189 (529) Q Consensus 130 eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~----------------p~~~~~~p~~v----QG~~a~~~ 189 (529) +.|||+.-..++...+.+.-..--+..-.+.+.+.-...+. |+-++...-.| .|..+..- T Consensus 7 ~~l~D~~sf~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~vitg~g~I~G~~V~v~a~d~~~~gGs~~~~~~~K 86 (249) T 2f9y_B 7 HSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGAR 86 (249) T ss_dssp HHHSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEECEETTEECBEEEECTTSTTTCBCTHHHHH T ss_pred HHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEECCEEEEEEEEEHHHHCCCCCHHHHHH T ss_conf 87635996787678767788445654433430155430256887615999998899899999976222134426667777 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH--HHHHCC-HHHHHHH---HHHCCCEEEEEECCCCCC---HHHHHHH Q ss_conf 999999997410035767775899951688844--422007-6999999---974890488520577752---5898864 Q gi|254780791|r 190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIE--DLWHFN-DEMIVRA---IANSSIPIISAIGHETDW---TLADYAA 260 (529) Q Consensus 190 i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e--DL~~FN-~e~lara---I~~~~iPVisgIGHE~D~---Tl~D~VA 260 (529) ++++++.+.+.. .-+|.++-+||..- .--++. --.++++ .+...+|+||.|.-..=- -+.=+.+ T Consensus 87 ~~r~~~~a~~~~-------lPiv~l~dt~G~~~~~~~e~~~~~~~~~~~~~~~~~~~vP~i~vi~g~~~gG~~~~~~~~~ 159 (249) T 2f9y_B 87 FVRAVEQALEDN-------CPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG 159 (249) T ss_dssp HHHHHHHHHHHT-------CCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC T ss_pred HHHHHHHHHHHC-------CCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECHHCC T ss_conf 657999999839-------9769984577543332100100000367789999967997467723786656142012056 Q ss_pred CCCCCCCHH Q ss_conf 123777214 Q gi|254780791|r 261 DLRAPTPTG 269 (529) Q Consensus 261 D~Ra~TPTa 269 (529) |.-..+|++ T Consensus 160 ~~~~~~~~a 168 (249) T 2f9y_B 160 DLNIAEPKA 168 (249) T ss_dssp SEEEECTTC T ss_pred CEEEEECCC T ss_conf 489863100 No 461 >>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:1-110,A:245-289) Probab=21.63 E-value=36 Score=12.12 Aligned_cols=93 Identities=16% Similarity=0.054 Sum_probs=56.1 Q ss_pred CCEEEEEEC-C-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 528999847-8-42589999998630---597589997210011110367999999997410035767775899951688 Q gi|254780791|r 145 PKIIAVITS-P-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 145 p~~i~vits-~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) -..||||-+ . +..-+..|+.-+.. ..++.++++++.--++..... ++.+.. .++|.|||.. T Consensus 11 S~~IglIvp~~~snpffs~il~gI~~~a~~~Gy~lii~~t~~~~e~~~~~----i~~l~~-------~~vDGIIi~~--- 76 (155) T 3g85_A 11 KPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLE----KGISKE-------NSFDAAIIAN--- 76 (155) T ss_dssp CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGC----GGGSTT-------TCCSEEEESS--- T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH----HHHHHH-------CCCCEEEECC--- T ss_conf 99899995775575899999999999999859977999838971199999----999984-------7978798558--- Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH Q ss_conf 844422007699999997489048852057775258988 Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADY 258 (529) Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~ 258 (529) ...++.....+....+|+|. ||+..+..=++. T Consensus 77 ------~~~~d~~~~~l~~~~iPiVl-id~~~~~~~~~~ 108 (155) T 3g85_A 77 ------ISNYDLEYLNKASLTLPIIL-FNRLSNKYSSVN 108 (155) T ss_dssp ------CCHHHHHHHHHCCCSSCEEE-ESCCCSSSEEEE T ss_pred ------CCCCHHHHHHHHHCCCCEEE-ECCCCCCCCEEE T ss_conf ------87882999999757998899-534677578899 No 462 >>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:1-106,A:233-277) Probab=21.59 E-value=36 Score=12.12 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=44.6 Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884 Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529) Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529) +.||||++. ++--+.++++-+.+ ..++.+.++++.=.- +.....+++.+... .+|.||+.=- T Consensus 11 ~tIgiIvpdl~~~f~~~ii~gI~~~a~~~Gy~v~I~~~~~~~---~~~e~~~i~~l~~~-------~vDGIIl~~~---- 76 (151) T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSD---VKKYQNAIINFENN-------NVDGIITSAF---- 76 (151) T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCC---HHHHHHHHHHHHHT-------TCSEEEEECC---- T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---HHHHHHHHHHHHHC-------CCCEEEECCC---- T ss_conf 889999299878899999999999999849989999589999---99999999999867-------9638994343---- Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 4422007699999997489048852 Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisg 246 (529) ++-. .....+|+|.= T Consensus 77 -~l~~---------~~~~~IPvV~i 91 (151) T 3hs3_A 77 -TIPP---------NFHLNTPLVMY 91 (151) T ss_dssp -CCCT---------TCCCSSCEEEE T ss_pred -CCCH---------HHHCCCCEEEE T ss_conf -2204---------77659988997 No 463 >>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A* (A:1-304) Probab=21.57 E-value=36 Score=12.12 Aligned_cols=14 Identities=7% Similarity=0.442 Sum_probs=5.4 Q ss_pred CEEEEECCCCCHHH Q ss_conf 58999516888444 Q gi|254780791|r 210 DIIILARGGGSIED 223 (529) Q Consensus 210 D~iii~RGGGS~eD 223 (529) ++||+.-||+...| T Consensus 33 ~~viV~sa~~~~~~ 46 (304) T 3c1m_A 33 DVVVVVSAMSEVTN 46 (304) T ss_dssp SCEEEEECCSTTHH T ss_pred CCCCCCCCCCCCCH T ss_conf 87776476887742 No 464 >>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} (A:) Probab=21.35 E-value=37 Score=12.08 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=64.7 Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHH-----HHHHHC-CC---EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 6310265289998478425899999-----986305-97---58999721001111036799999999741003576777 Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDIL-----QRISCR-FP---LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529) Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~-----~~~~~r-~p---~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529) -.++.-+.|||||.|.=-..+-|=+ ..+.+. .+ +.++-.|-.. ||--+++++-... +| T Consensus 6 ~~~~~~~~ri~IV~s~fn~~i~~~l~~ga~~~l~~~g~~~~~i~v~~VPGa~-------ElP~a~~~l~~~~------~~ 72 (154) T 1rvv_A 6 GNLVGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAF-------EIPFAAKKMAETK------KY 72 (154) T ss_dssp CCSCCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGG-------GHHHHHHHHHHTS------CC T ss_pred CCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEE-------CHHHHHHHHHCCC------CC T ss_conf 5557899889999813769999999999999999859986576799988542-------1889999875035------65 Q ss_pred CEEE----EECCCCCHHHHHHCC-HHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 5899----951688844422007-6999999974890488520577752 Q gi|254780791|r 210 DIII----LARGGGSIEDLWHFN-DEMIVRAIANSSIPIISAIGHETDW 253 (529) Q Consensus 210 D~ii----i~RGGGS~eDL~~FN-~e~laraI~~~~iPVisgIGHE~D~ 253 (529) |.+| |+||+=.--|..|=. ...|.+.=....+||+.||=|.-.. T Consensus 73 DavvaLG~VIrG~T~H~e~v~~~vs~gl~~v~l~~~~PV~~gvlt~~~~ 121 (154) T 1rvv_A 73 DAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENI 121 (154) T ss_dssp SEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSH T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH T ss_conf 6278888896178712678999999999986465898789874488988 No 465 >>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:106-201) Probab=21.32 E-value=37 Score=12.08 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=30.7 Q ss_pred HHCCCEEEEECCCCCE------EC-C----HHHCCCCCEEEEEEECEEEEEEEEECCCC Q ss_conf 7314619998489889------57-7----78929998699999110999999505788 Q gi|254780791|r 457 TLKRGYTSIQDTNNNF------IT-Q----KRNLATKTRILINFFDGQANAIVINKAPP 504 (529) Q Consensus 457 ~L~RGYaiv~~~~Gki------I~-s----~~~l~~gd~i~i~l~DG~v~a~V~~k~~~ 504 (529) .|++|.-++...+... |. + .+.+++|+.|- +.||.+..+|+++.+. T Consensus 14 ~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~Il--idDG~i~l~V~~v~~~ 70 (96) T 3gg8_A 14 TLQQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTIL--IADGSLSVKVVEVGSD 70 (96) T ss_dssp EECTTCEEEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEE--ETTTTEEEEEEEECSS T ss_pred EECCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEE--EECCCEEEEEEEECCE T ss_conf 85699889996687668986679873242212478898899--8068404888840210 No 466 >>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus} (A:) Probab=21.23 E-value=37 Score=12.06 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.6 Q ss_pred CCCCEEEEEEE Q ss_conf 45988999999 Q gi|254780791|r 81 EEGIEFLVIGK 91 (529) Q Consensus 81 ~~G~~v~~~g~ 91 (529) ..|..+...|. T Consensus 107 ~~~~~~~~~g~ 117 (191) T 1zyo_A 107 SSKDVITCYGG 117 (191) T ss_dssp CSCEEEEEEEE T ss_pred CCCCCCEEECC T ss_conf 03000101205 No 467 >>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} (A:1-78,A:188-374) Probab=21.01 E-value=37 Score=12.03 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=20.9 Q ss_pred CCCCC-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH Q ss_conf 01111-0367999999997410035767775899951688844 Q gi|254780791|r 181 VQGDE-CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529) Q Consensus 181 vQG~~-a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529) +-|.. ...||.+.+.... ...+|+||.+=||||.- T Consensus 88 ~~gq~tig~Ei~~Ql~e~~-------g~~pD~Vv~~vGgGs~~ 123 (265) T 1v8z_A 88 RDFQSVIGREAKAQILEAE-------GQLPDVIVACVGGGSNA 123 (265) T ss_dssp HHHHHHHHHHHHHHHHHHH-------SSCCSEEEEECSSSHHH T ss_pred HHHHHHHHHHHHHHHHHHC-------CCCCCEEEECCCCHHHH T ss_conf 5332577887998899860-------89998899778871789 No 468 >>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex; HET: PSQ; 1.70A {Escherichia coli} (G:1-152,G:303-333) Probab=20.99 E-value=37 Score=12.02 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=55.2 Q ss_pred CCCCCC-CEEEEEECCCHHH-HHHHHHHHHHCCCEEEEEEECC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE Q ss_conf 310265-2899984784258-9999998630597589997210---0111103679999999974100357677758999 Q gi|254780791|r 140 PIPFIP-KIIAVITSPTGAV-IRDILQRISCRFPLRVIIFPVK---VQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529) Q Consensus 140 ~lP~~p-~~i~vits~~~a~-~~D~~~~~~~r~p~~~~~~p~~---vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529) +.+.+. +.|+.+=-.+|-- .-=| .....|-+..++.++.. +-..+ ++......++.+ +| +|+ T Consensus 38 ~~~~L~gK~v~llF~epSTRTR~SF-e~A~~~LGg~vi~l~~~~ss~~kgE---si~Dta~vLs~y--------~D-~iv 104 (183) T 1duv_G 38 EEAKLTGKNIALIFEKDSTRTRCSF-EVAAYDQGARVTYLGPSGSQIGHKE---SIKDTARVLGRM--------YD-GIQ 104 (183) T ss_dssp CCCSCTTCEEEEEESSCCSHHHHHH-HHHHHHTTCEEEEECSSSSCBTTTB---CHHHHHHHHTTT--------CS-EEE T ss_pred CCCCCCCCEEEEEECCCCHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCC---HHHHHHHHHHCC--------CC-EEE T ss_conf 6656799989999668962489999-9999983644013453000245540---167798874224--------63-476 Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHHH Q ss_conf 516888444220076999999974890488520577--7525898864 Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYAA 260 (529) Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~VA 260 (529) +|+. .+..+......+.+|||.|-|.. .=-.|+|+-. T Consensus 105 iR~~---------~~~~l~~la~~~~vPVINg~~~~~HPtQaLaDl~T 143 (183) T 1duv_G 105 YRGY---------GQEIVETLAEYASVPVWNGLTNEFHPTQLLADLLT 143 (183) T ss_dssp EECS---------CHHHHHHHHHHHSSCEEESCCSSCCHHHHHHHHHH T ss_pred ECCC---------CCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 4256---------66402322320776520341467769999999999 No 469 >>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} (A:) Probab=20.91 E-value=37 Score=12.01 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=50.2 Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422 Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529) Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529) ++|-||-. ...++..++..-..|++++..+... ..|+..+... .||+||+ |+. T Consensus 2 ~~ILiVDd--d~~~~~~i~~~L~~~g~~v~~a~~~----------~eal~~l~~~-------~~dlvil--------D~~ 54 (121) T 1zh2_A 2 TNVLIVED--EQAIRRFLRTALEGDGMRVFEAETL----------QRGLLEAATR-------KPDLIIL--------DLG 54 (121) T ss_dssp CEEEEECS--CHHHHHHHHHHHHTTTCEEEEESSH----------HHHHHHHHHH-------CCSEEEE--------ESE T ss_pred CEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHC-------CCCEEEE--------ECC T ss_conf 84999979--9999999999999879999996788----------9999999826-------9988996--------034 Q ss_pred --HCCHHHHHHHHH-HCCCEEEEEECCCCCCHH Q ss_conf --007699999997-489048852057775258 Q gi|254780791|r 226 --HFNDEMIVRAIA-NSSIPIISAIGHETDWTL 255 (529) Q Consensus 226 --~FN~e~laraI~-~~~iPVisgIGHE~D~Tl 255 (529) .-|-.++++.+. ..++|+|--.++.-.... T Consensus 55 lP~~~G~ell~~l~~~~~~p~I~~t~~~~~~~~ 87 (121) T 1zh2_A 55 LPDGDGIEFIRDLRQWSAVPVIVLSARSEESDK 87 (121) T ss_dssp ETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHH T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHH T ss_conf 569973899999972257729999834899999 No 470 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:36-143) Probab=20.80 E-value=38 Score=11.99 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=20.2 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH Q ss_conf 3679999999974100357677758999516888444220076999999974 Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN 238 (529) Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~ 238 (529) .+.+.+||..+.... ++++|.|+=.. .-.|-.=|=+.+|+..-. T Consensus 46 ~~kL~~aI~~~~~~~------~p~~I~V~~tc--~~~iIGdDi~~v~~~~~~ 89 (108) T 1mio_B 46 GSNIKTAVKNIFSLY------NPDIIAVHTTC--LSETLGDDLPTYISQMED 89 (108) T ss_dssp HHHHHHHHHHHHHHT------CCSEEEEEECH--HHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHC------CCCEEEEECCC--HHHHHCCCHHHHHHHHHH T ss_conf 899999999999850------99899996786--798856889999999998 No 471 >>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} (A:) Probab=20.78 E-value=38 Score=11.99 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=6.9 Q ss_pred CEEEEEECCCHHHHHH Q ss_conf 2899984784258999 Q gi|254780791|r 146 KIIAVITSPTGAVIRD 161 (529) Q Consensus 146 ~~i~vits~~~a~~~D 161 (529) ..|-||+......+.+ T Consensus 43 ~~ivvv~~~~~~~~~~ 58 (245) T 1h7e_A 43 VAEVWVATDDPRVEQA 58 (245) T ss_dssp CCEEEEEESCHHHHHH T ss_pred CCEEEEECCCCCCHHH T ss_conf 9979997566310013 No 472 >>1tdz_A Formamidopyrimidine-DNA glycosylase; DNA repair, FPG, MUTM, FAPY G, hydrolase/DNA complex; HET: FOX; 1.80A {Lactococcus lactis} (A:137-272) Probab=20.75 E-value=38 Score=11.99 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=26.2 Q ss_pred HCCHHHHHHHHHHCCCE---------EEEEECCCCCCHHHHHHHCCCCCCCHHHH Q ss_conf 00769999999748904---------88520577752589886412377721456 Q gi|254780791|r 226 HFNDEMIVRAIANSSIP---------IISAIGHETDWTLADYAADLRAPTPTGAA 271 (529) Q Consensus 226 ~FN~e~laraI~~~~iP---------VisgIGHE~D~Tl~D~VAD~Ra~TPTaAA 271 (529) .||.+.+.+.+...+.| ||+|||- -+.|.+-...--.|...+ T Consensus 4 ~fd~~~~~~~l~~~~~~Ik~~LlDQ~~iaGIGN----iy~~EiLf~A~IhP~~~~ 54 (136) T 1tdz_A 4 DFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGN----IYVDEVLWLAKIHPEKET 54 (136) T ss_dssp TCCHHHHHHHHHHCCSBHHHHHHTSSSSSCCCH----HHHHHHHHHTTCCTTCBG T ss_pred CCCHHHHHHHHHCCCCCCEEEEEECCEECCCCC----EEHHHHHHHHHHHHHHHH T ss_conf 212033332200023110016750525505676----725557656443253322 No 473 >>2w19_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AROG; transferase isomerase complex, aromatic amino acid biosynthesis, multi-enzyme complex; 2.15A {Mycobacterium tuberculosis} PDB: 2w1a_A* 2b7o_A* (A:) Probab=20.73 E-value=38 Score=11.98 Aligned_cols=85 Identities=13% Similarity=0.211 Sum_probs=50.3 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC Q ss_conf 10367999999997410035767775899951-68884442200769999999748904885205777525898864123 Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR 263 (529) Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R 263 (529) ..+.++++=++.+|-.++. =-+.+|+| |.+.+.|.- ..|++||-+.-.|||=-. | =+. T Consensus 321 ~~p~el~~L~~~LnP~~ep-----GRlTLI~RmGa~kV~~~L----P~li~aV~~~G~~VvW~c---------D---PMH 379 (472) T 2w19_A 321 MTPELAVEYVERLDPHNKP-----GRLTLVSRMGNHKVRDLL----PPIVEKVQATGHQVIWQC---------D---PMH 379 (472) T ss_dssp CCHHHHHHHHHHHCTTCCT-----TSEEEEECCCTTTHHHHH----HHHHHHHHHTTCCCEEEE---------C---CST T ss_pred CCHHHHHHHHHHHCCCCCC-----CEEEEEEECCCHHHHHHH----HHHHHHHHHCCCCEEEEE---------C---CCC T ss_conf 9999999999984978878-----628999603837899888----999999987799649970---------7---988 Q ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 777214567633234677766999998 Q gi|254780791|r 264 APTPTGAAEMAVPVKEHLQSSLINLEA 290 (529) Q Consensus 264 a~TPTaAAElavp~~~EL~~~L~~l~~ 290 (529) --|=+++--+-+..+..+...+..+.+ T Consensus 380 GNT~~~~~G~KTR~f~~I~~Ev~~ff~ 406 (472) T 2w19_A 380 GNTHESSTGFKTRHFDRIVDEVQGFFE 406 (472) T ss_dssp TCC---------CHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 875227998507777899999999999 No 474 >>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:1-107,A:244-301) Probab=20.64 E-value=38 Score=11.97 Aligned_cols=85 Identities=11% Similarity=0.017 Sum_probs=51.0 Q ss_pred CCEEEEEECCCH-HHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC Q ss_conf 528999847842-589999998630---5975899972100111103679999999974100357677758999516888 Q gi|254780791|r 145 PKIIAVITSPTG-AVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529) Q Consensus 145 p~~i~vits~~~-a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529) .++||+|++..+ .-+.++++-+.+ .++++++++... +..+..-.+.|+.+-.. .+|.||+.=..-. T Consensus 3 s~~IgvI~p~~~~~f~~~i~~Gi~~aa~~~Gy~vil~~~s---~~d~~~q~~~i~~li~~-------~vDGIIi~~~~~~ 72 (165) T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPT---EPSVSGQVQLVNNFVNQ-------GYDAIIVSAVSPD 72 (165) T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCS---SCCHHHHHHHHHHHHHT-------TCSEEEECCSSSS T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC---CCCHHHHHHHHHHHHHC-------CCCEEEECCCCCC T ss_conf 7889999499999999999999999999819989999799---99999999999999973-------9974420133320 Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEE Q ss_conf 44422007699999997489048852 Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISA 246 (529) Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisg 246 (529) ..+...+...+..||||+= T Consensus 73 -------~~~~~i~~l~~~gIPVV~i 91 (165) T 1tjy_A 73 -------GLCPALKRAMQRGVKILTW 91 (165) T ss_dssp -------TTHHHHHHHHHTTCEEEEE T ss_pred -------HHHHHHHHHHHCCCCEEEC T ss_conf -------2456888765058520103 No 475 >>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} (A:1-152,A:307-335) Probab=20.64 E-value=38 Score=11.97 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=66.5 Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE-CC--CCC Q ss_conf 710168007999999999976540122610016310265289998478425899999986305975899972-10--011 Q gi|254780791|r 107 SLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP-VK--VQG 183 (529) Q Consensus 107 ~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p-~~--vQG 183 (529) ++.+..+-.|+..-+++|+.-.. .+.+-|.--+.++.+=-..+-==+==--....+.+..++.++ .. +.. T Consensus 14 dls~~el~~Ll~~A~~lK~~~~~-------~~~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~k 86 (181) T 1dxh_A 14 HHSTRELRYLLDLSRDLKRAKYT-------GTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGH 86 (181) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH-------TCCCCCCTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTTCCBTT T ss_pred HCCHHHHHHHHHHHHHHHHHHHC-------CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCC T ss_conf 19999999999999999877745-------88776679988999955897125999999999859938996863356789 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC--CCCHHHHHH Q ss_conf 1103679999999974100357677758999516888444220076999999974890488520577--752589886 Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE--TDWTLADYA 259 (529) Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE--~D~Tl~D~V 259 (529) .+ ++......++.+ +| +|++|+. ....+-+....|.+|||-|-|.. .=-.|+|+. T Consensus 87 gE---si~DtarvLs~y--------~D-~iviR~~---------~~~~l~~~a~~s~vPVINg~~~~~HPtQaLaDl~ 143 (181) T 1dxh_A 87 KE---SMKDTARVLGRM--------YD-AIEYRGF---------KQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVL 143 (181) T ss_dssp TB---CHHHHHHHHHHH--------CS-EEEEECS---------CHHHHHHHHHHSSSCEEEEECSSCCHHHHHHHHH T ss_pred CC---CHHHHHHHHHHH--------CC-EEEEECC---------CHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH T ss_conf 97---999999999863--------83-9999468---------5579999998689867868986525679999999 No 476 >>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} (A:114-382) Probab=20.60 E-value=38 Score=11.96 Aligned_cols=12 Identities=17% Similarity=0.459 Sum_probs=5.5 Q ss_pred CCEEEEECCCCC Q ss_conf 758999516888 Q gi|254780791|r 209 PDIIILARGGGS 220 (529) Q Consensus 209 ~D~iii~RGGGS 220 (529) .|+.+.++.+++ T Consensus 96 ~~~~~~vd~~~~ 107 (269) T 2qq6_A 96 PEVEVAIDXHGR 107 (269) T ss_dssp SSSEEEEECTTC T ss_pred CCEEEEECCCCC T ss_conf 984885135545 No 477 >>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone/receptor complex, natriuretic peptide receptor, allosteric activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} (A:1-136,A:285-357) Probab=20.53 E-value=38 Score=11.95 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=48.8 Q ss_pred CCCCEEEEEECCCHH----------HHHHHHHHHHHC----------CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 265289998478425----------899999986305----------975899972100111103679999999974100 Q gi|254780791|r 143 FIPKIIAVITSPTGA----------VIRDILQRISCR----------FPLRVIIFPVKVQGDECPKEIANAILQLNTLKE 202 (529) Q Consensus 143 ~~p~~i~vits~~~a----------~~~D~~~~~~~r----------~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~ 202 (529) .-+-+||++.+.+|. |++.-+..+.+. +++++......-.-..+. .-+.|.+.+.. T Consensus 7 ~~~i~IG~l~p~sg~~a~~g~~~~~a~~lAi~~IN~~ggi~~~~l~g~~i~~v~~D~~~~~~~~~-~a~~a~~l~~~--- 82 (209) T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALF-SLVDRVAAARG--- 82 (209) T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHH-HHHHHHHHTTT--- T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHH-HHHHHHHHHCC--- T ss_conf 97119999977999422104679999999999998667855567899589999964999979999-99999986245--- Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCH Q ss_conf 3576777589995168884442200769999999748904885205777525 Q gi|254780791|r 203 GRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWT 254 (529) Q Consensus 203 ~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~T 254 (529) .++|+|| |.++-. --+.+++......||+||.-.....+| T Consensus 83 ----~~v~~ii---Gp~~s~-----~~~ava~~a~~~~iP~is~~a~~~~ls 122 (209) T 1jdp_A 83 ----AKPDLIL---GPVCEY-----AAAPVARLASHWDLPMLSAGALAAGFQ 122 (209) T ss_dssp ----CCCSEEE---CCCSHH-----HHHHHHHHHHHHTCCEEESCCCSGGGG T ss_pred ----CCEEEEE---CCCCHH-----HHHHHHHHHHHCCCEEEECCCCCCHHC T ss_conf ----7808999---998708-----999999999974983995465880121 No 478 >>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} (A:1-79) Probab=20.41 E-value=38 Score=11.93 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=50.3 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) ...+|+||+.+++.. -.+ -.+++. |+ ..-+.++.++++.+-... .+.+|+| .|+ T Consensus 2 ~~~ki~VIgD~dtv~------GFr-L~Gi~~--~~-----v~~~ee~~~~~~~l~~~~------d~gII~i------te~ 55 (79) T 2d00_A 2 VPVRMAVIADPETAQ------GFR-LAGLEG--YG-----ASSAEEAQSLLETLVERG------GYALVAV------DEA 55 (79) T ss_dssp CCCCEEEEECHHHHH------HHH-HTTSEE--EE-----CSSHHHHHHHHHHHHHHC------CCSEEEE------ETT T ss_pred CCEEEEEECCHHHHH------HHH-HCCEEE--EE-----CCCHHHHHHHHHHHHHCC------CEEEEEE------EHH T ss_conf 726999983688878------876-404135--75-----799899999999997088------8149997------289 Q ss_pred HHHCCHHHHHHHHHHCCCEEEEEE Q ss_conf 220076999999974890488520 Q gi|254780791|r 224 LWHFNDEMIVRAIANSSIPIISAI 247 (529) Q Consensus 224 L~~FN~e~laraI~~~~iPVisgI 247 (529) +..-=.+.+-+-..++.+|+|.-| T Consensus 56 ~~~~i~~~i~~~~~~~~~P~Ii~I 79 (79) T 2d00_A 56 LLPDPERAVERLMRGRDLPVLLPI 79 (79) T ss_dssp TCSCHHHHHHHHTTCCCCCEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 986618999999846999889996 No 479 >>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} (D:) Probab=20.28 E-value=38 Score=11.91 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=52.3 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC Q ss_conf 31026528999847842589999998630597589997210011110367999999997410035767775899951688 Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529) Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529) .-|.-+.+|||+.=++. +.|+++.++.+- +++.+++..- ...++|.|||.=|-+ T Consensus 15 ~~~~~~~~Iav~~~~~~--~~~~~~~l~~~G-~~~~~~~~~~-----------------------~l~~~D~iil~GG~~ 68 (208) T 2iss_D 15 VPRGSHMKIGVLGVQGD--VREHVEALHKLG-VETLIVKLPE-----------------------QLDMVDGLILPGGES 68 (208) T ss_dssp -----CCEEEEECSSSC--HHHHHHHHHHTT-CEEEEECSGG-----------------------GGGGCSEEEECSSCH T ss_pred CCCCCCCEEEEEECCCC--HHHHHHHHHHCC-CCEEEECCHH-----------------------HHHHCCEEEECCCCH T ss_conf 68999989999967998--999999999889-9899989989-----------------------983089899978868 Q ss_pred CHHH--HHHCCHHHHHHHHHHCCCEEEE Q ss_conf 8444--2200769999999748904885 Q gi|254780791|r 220 SIED--LWHFNDEMIVRAIANSSIPIIS 245 (529) Q Consensus 220 S~eD--L~~FN~e~laraI~~~~iPVis 245 (529) +..| +|.-.....++..++-.+||+- T Consensus 69 ~~~~~~~~~~~~~~~i~~~~~~g~PilG 96 (208) T 2iss_D 69 TTMIRILKEMDMDEKLVERINNGLPVFA 96 (208) T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCEEEE T ss_conf 9887665420110678999865965999 No 480 >>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A (A:1-145,A:275-307) Probab=20.14 E-value=39 Score=11.89 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=55.5 Q ss_pred CCCCCCCC-CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 10016310-265289998478425899999986305975899-97210--011110367999999997410035767775 Q gi|254780791|r 135 DQHKNPIP-FIPKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVK--VQGDECPKEIANAILQLNTLKEGRTCPRPD 210 (529) Q Consensus 135 ~~~k~~lP-~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~--vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D 210 (529) .+++.+.+ .-.+.|+.+=-.++-=-+==-.....+-+..++ +=|.. +...+ ++......++.+ +| T Consensus 28 ~~~~~~~~~L~gk~i~~lF~e~StRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgE---s~~Dta~vls~~--------~D 96 (178) T 2i6u_A 28 KDPVSRRPLQGPRGVAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQLGRDE---TLQDTAKVLSRY--------VD 96 (178) T ss_dssp HSTTSCCTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEGGGSGGGGTC---CHHHHHHHHHHH--------EE T ss_pred HCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCC---HHHHHHHHHHHH--------HH T ss_conf 3733467446797699996589733599999999954986201144323457761---455567663111--------24 Q ss_pred EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE---ECCCCCCHHHHHH Q ss_conf 899951688844422007699999997489048852---0577752589886 Q gi|254780791|r 211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA---IGHETDWTLADYA 259 (529) Q Consensus 211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg---IGHE~D~Tl~D~V 259 (529) +|++|+. ....+-.....+.+|||-| +.|=| -.|+|+- T Consensus 97 -~iv~R~~---------~~~~~~~~a~~~~vPVINa~~~~~HPt-Q~LaD~~ 137 (178) T 2i6u_A 97 -AIVWRTF---------GQERLDAMASVATVPVINALSDEFHPC-QVLADLQ 137 (178) T ss_dssp -EEEEECS---------SHHHHHHHHHHCSSCEEESCCSSCCHH-HHHHHHH T ss_pred -HHHHCCC---------CCCCCCCCCCCCCCCEECCCCCCHHHH-HHHHHHH T ss_conf -4310222---------332211123356766453675411099-9998899 No 481 >>1dcf_A ETR1 protein; beta-alpha five sandwich; 2.50A {Arabidopsis thaliana} (A:) Probab=20.13 E-value=39 Score=11.88 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=55.5 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529) -+.||-||-. ....+.+++..-++|++++... .+.-+|++.+.. .||+|++- -. T Consensus 6 ~~~riLvVdd--~~~~~~~~~~~L~~~G~~v~~a----------~~~~eAl~~l~~--------~~dliilD------~~ 59 (136) T 1dcf_A 6 TGLKVLVMDE--NGVSRMVTKGLLVHLGCEVTTV----------SSNEECLRVVSH--------EHKVVFMD------VC 59 (136) T ss_dssp TTCEEEEECS--CHHHHHHHHHHHHHTTCEEEEE----------SSHHHHHHHCCT--------TCSEEEEE------CC T ss_pred CCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEE----------CCHHHHHHHHHC--------CCCEEEEE------EC T ss_conf 9999999959--9999999999999879999998----------999999997643--------99853864------13 Q ss_pred HHHCCHHHHHHHHH-------HCCCEEEEEECCCCCCHHHH Q ss_conf 22007699999997-------48904885205777525898 Q gi|254780791|r 224 LWHFNDEMIVRAIA-------NSSIPIISAIGHETDWTLAD 257 (529) Q Consensus 224 L~~FN~e~laraI~-------~~~iPVisgIGHE~D~Tl~D 257 (529) |...|-.++++.|= ...+|||.--||........ T Consensus 60 lp~~~G~e~~~~ir~~~~~~~~~~~~ii~~s~~~~~~~~~~ 100 (136) T 1dcf_A 60 MPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEK 100 (136) T ss_dssp SSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHH T ss_conf 79986799999999860002699985999979999999999 No 482 >>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} (A:) Probab=20.11 E-value=39 Score=11.88 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=46.6 Q ss_pred CCCEEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE Q ss_conf 65289998478425899999-9863059758999721001111036799999999741003576777589995 Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDIL-QRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529) Q Consensus 144 ~p~~i~vits~~~a~~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529) ...-++-+-+-||.++.-++ ..+++++|..+.++|.+.-+++.. +.-+|+..++.+.+ ..|.+|+. T Consensus 98 ~~~~~~~~gGGTGSG~~~~i~~~~~~~~~~~~~vv~~p~~~e~~v-~~yNa~l~l~~L~~-----~~D~~i~~ 164 (320) T 1ofu_A 98 MVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVVTRPFPFEGRK-RMQIADEGIRALAE-----SVDSLITI 164 (320) T ss_dssp EEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHH-HHHHHHHHHHHHHT-----TCSEEEEE T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHHHHHHHHH-----HCCCHHEE T ss_conf 899994268988765289999999984993899997786553368-99999999999998-----67823111 No 483 >>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* (A:192-274) Probab=20.03 E-value=35 Score=12.22 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=19.1 Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC Q ss_conf 7699999997489048852057775258988641237772 Q gi|254780791|r 228 NDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267 (529) Q Consensus 228 N~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP 267 (529) |...+...|...+.|+-. ..+-.+.|++..+=.+-| T Consensus 39 ~~~~~~~~i~~~~~~~p~----~~~~~~~~li~~~l~~dP 74 (83) T 3g51_A 39 DRKETMTMILKAKLGMPQ----FLSPEAQSLLRMLFKRNP 74 (83) T ss_dssp SHHHHHHHHHHCCCCCCT----TSCHHHHHHHHHHCCSSG T ss_pred CHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHCCCCH T ss_conf 999999999808999987----789999999999753898 No 484 >>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold; 1.75A {Escherichia coli} (A:1-112) Probab=20.01 E-value=39 Score=11.87 Aligned_cols=30 Identities=7% Similarity=-0.104 Sum_probs=16.1 Q ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 772145676332346777669999988877 Q gi|254780791|r 265 PTPTGAAEMAVPVKEHLQSSLINLEARLNN 294 (529) Q Consensus 265 ~TPTaAAElavp~~~EL~~~L~~l~~RL~~ 294 (529) -.=|+||+..-=...-+...|..+++.+.. T Consensus 35 gS~t~AA~~l~is~~avs~~i~~LE~~lg~ 64 (112) T 1b9m_A 35 GSISQGAKDAGISYKSAWDAINEXNQLSEH 64 (112) T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTS T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC T ss_conf 999999999798999999999999987199 Done!