HHsearch results for GI: 254780791 and protein with PDBid: 3f2b_A

>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=94.83  E-value=0.28  Score=29.56  Aligned_cols=78  Identities=18%  Similarity=0.137  Sum_probs=57.6

Q ss_pred             CCCEEEEEEECCCCCC-CCCC-EEE-EEEECCCCEEEEEEECCCCCCCC--CCCCCCCEEEEEEEEEEECC-CCEEEEEE
Q ss_conf             1718999997054356-8886-279-99874894799999735210586--68145988999999667528-84379999
Q gi|254780791|r   32 LSHVCVRGEISGYRGI-HSSG-HAY-FSLKDNHSRIDAIIWKGTLNKIE--FLPEEGIEFLVIGKITTFPG-SSKYQIII  105 (529)
Q Consensus        32 ~~~~~v~gEis~~~~~-~~sG-H~Y-f~lkd~~a~i~~~~~~~~~~~~~--~~~~~G~~v~~~g~~~~y~~-~g~~ql~v  105 (529)
                      -.+|.|+|+|-++-.+ -++| ++| |.+.|...+|.|.+|...-....  -.++.|+-|.+.|++. |.. .+.+.+.+
T Consensus        17 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~   95 (1041)
T 3f2b_A           17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQ-NDTFVRDLVIIA   95 (1041)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEE-EETTTTEEEEEE
T ss_pred             CCEEEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEE-CCCCCCCEEEEE
T ss_conf             6669999999987768604898899999982688689999558744088984067996899999885-157777417971


Q ss_pred             EEEEE
Q ss_conf             97101
Q gi|254780791|r  106 ESLIP  110 (529)
Q Consensus       106 ~~i~~  110 (529)
                      ..|..
T Consensus        96 ~~~~~  100 (1041)
T 3f2b_A           96 NDLNE  100 (1041)
T ss_dssp             EEEEE
T ss_pred             EEEEE
T ss_conf             01365