Query gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 529
No_of_seqs 228 out of 1609
Neff 8.5
Searched_HMMs 23785
Date Mon May 30 13:30:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780791.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hpi_A DNA polymerase III alph 96.6 0.01 4.2E-07 42.6 8.1 53 55-110 1068-1120(1220)
2 3kf6_A Protein STN1; OB fold, 96.4 0.058 2.4E-06 35.7 11.0 104 6-113 11-128 (159)
3 3bfj_A 1,3-propanediol oxidore 95.7 0.088 3.7E-06 34.1 9.2 69 146-224 34-107 (387)
4 2pi2_A Replication protein A 3 95.6 0.19 7.9E-06 31.2 10.8 114 12-131 46-171 (270)
5 1vlj_A NADH-dependent butanol 95.6 0.096 4E-06 33.8 8.9 74 146-237 44-121 (407)
6 1o2d_A Alcohol dehydrogenase, 95.3 0.12 5E-06 33.0 8.7 75 145-237 40-118 (371)
7 1rrm_A Lactaldehyde reductase; 95.2 0.1 4.4E-06 33.4 8.2 75 145-237 31-108 (386)
8 3kdf_D Replication protein A 3 95.2 0.25 1.1E-05 30.0 10.9 110 14-127 8-127 (132)
9 1v1q_A Primosomal replication 95.0 0.28 1.2E-05 29.6 10.4 80 33-113 20-119 (134)
10 3f2b_A DNA-directed DNA polyme 94.8 0.28 1.2E-05 29.6 9.5 78 32-110 17-100 (1041)
11 3eiv_A Single-stranded DNA-bin 94.6 0.19 8.1E-06 31.1 8.1 77 34-111 6-109 (199)
12 2fxq_A Single-strand binding p 94.5 0.31 1.3E-05 29.3 9.0 80 31-111 4-107 (264)
13 3hl0_A Maleylacetate reductase 94.4 0.26 1.1E-05 29.9 8.5 78 145-242 34-113 (353)
14 1oj7_A Hypothetical oxidoreduc 94.3 0.075 3.2E-06 34.7 5.5 68 146-225 51-122 (408)
15 3e0e_A Replication protein A; 94.2 0.41 1.7E-05 28.1 10.2 71 34-109 13-91 (97)
16 3jzd_A Iron-containing alcohol 94.1 0.2 8.5E-06 30.9 7.4 81 145-245 36-118 (358)
17 2eq5_A 228AA long hypothetical 94.1 0.29 1.2E-05 29.5 8.2 87 145-249 6-105 (228)
18 1z9f_A Single-strand binding p 94.1 0.25 1.1E-05 30.1 7.8 80 32-112 16-120 (153)
19 1txy_A Primosomal replication 93.8 0.3 1.2E-05 29.4 7.8 81 34-115 4-104 (104)
20 3pea_A Enoyl-COA hydratase/iso 93.5 0.14 5.8E-06 32.3 5.7 82 186-276 33-134 (261)
21 2vw9_A Single-stranded DNA bin 93.5 0.35 1.5E-05 28.8 7.7 80 32-112 2-106 (134)
22 3iv7_A Alcohol dehydrogenase I 92.8 0.2 8.3E-06 31.0 5.6 97 111-244 19-116 (364)
23 3ghg_A Fibrinogen alpha chain; 92.7 0.66 2.8E-05 26.3 13.4 85 250-336 30-116 (562)
24 2a7k_A CARB; crotonase, antibi 92.5 0.33 1.4E-05 28.9 6.4 79 185-269 27-125 (250)
25 1se8_A Single-strand binding p 92.2 0.72 3E-05 26.0 7.9 81 31-112 4-110 (301)
26 3h02_A Naphthoate synthase; ID 92.2 0.31 1.3E-05 29.3 5.9 77 186-269 55-153 (288)
27 3fhw_A Primosomal replication 92.2 0.55 2.3E-05 27.0 7.3 76 34-112 3-97 (115)
28 1szo_A 6-oxocamphor hydrolase; 92.1 0.35 1.5E-05 28.8 6.2 76 187-269 45-138 (257)
29 2zxr_A Single-stranded DNA spe 91.8 0.26 1.1E-05 29.9 5.2 13 479-491 474-486 (666)
30 1dci_A Dienoyl-COA isomerase; 91.7 0.29 1.2E-05 29.5 5.3 78 185-269 31-138 (275)
31 1jq5_A Glycerol dehydrogenase; 91.6 0.41 1.7E-05 28.1 6.1 72 145-227 31-104 (370)
32 3m4p_A Ehasnrs, asparaginyl-tR 91.1 0.94 3.9E-05 24.9 9.6 78 33-112 31-120 (456)
33 1gm5_A RECG; helicase, replica 91.0 0.22 9.1E-06 30.6 4.1 75 34-108 167-243 (780)
34 3bju_A Lysyl-tRNA synthetase; 91.0 0.97 4.1E-05 24.8 10.2 104 1-110 24-137 (521)
35 1qvc_A Single stranded DNA bin 90.9 0.98 4.1E-05 24.8 7.4 68 31-99 4-93 (145)
36 1wz8_A Enoyl-COA hydratase; ly 90.8 0.32 1.4E-05 29.1 4.8 78 185-269 37-135 (264)
37 1deq_A Fibrinogen (alpha chain 90.6 1 4.3E-05 24.6 20.9 47 209-270 6-52 (390)
38 1uiy_A Enoyl-COA hydratase; ly 90.6 0.34 1.4E-05 28.9 4.8 77 186-269 27-125 (253)
39 3oc7_A Enoyl-COA hydratase; se 90.5 0.45 1.9E-05 27.8 5.4 77 185-269 38-139 (267)
40 3en2_A Probable primosomal rep 90.5 1.1 4.4E-05 24.5 7.8 76 33-111 3-97 (101)
41 1o7i_A SSB, SSO2364, single st 90.4 1.1 4.5E-05 24.5 9.4 77 32-114 12-99 (119)
42 3gow_A PAAG, probable enoyl-CO 90.2 0.7 3E-05 26.1 6.1 78 186-269 28-122 (254)
43 2j5i_A P-hydroxycinnamoyl COA 90.1 0.15 6.4E-06 32.0 2.7 76 186-269 37-137 (276)
44 2ppy_A Enoyl-COA hydratase; be 89.8 0.83 3.5E-05 25.4 6.3 71 187-263 37-126 (265)
45 1pjh_A Enoyl-COA isomerase; EC 89.8 0.9 3.8E-05 25.1 6.5 78 184-268 35-142 (280)
46 2iex_A Dihydroxynapthoic acid 89.7 0.89 3.7E-05 25.1 6.4 78 186-269 40-137 (272)
47 3koj_A Uncharacterized protein 89.5 1.2 5.2E-05 23.9 8.0 77 31-108 10-106 (108)
48 3afp_A Single-stranded DNA-bin 89.5 1.2 5.2E-05 23.9 7.1 78 32-110 4-108 (168)
49 3jy6_A Transcriptional regulat 89.5 1.2 5.2E-05 23.9 9.1 86 145-250 123-217 (276)
50 1m1j_B Fibrinogen beta chain; 89.3 1.3 5.3E-05 23.8 14.9 15 279-293 85-99 (464)
51 3k8a_A Putative primosomal rep 89.3 1.3 5.3E-05 23.8 7.5 74 34-111 9-101 (103)
52 2kbn_A Conserved protein; nucl 89.2 1.3 5.4E-05 23.7 10.2 72 31-107 14-87 (109)
53 3ull_A DNA binding protein; DN 89.2 1.1 4.4E-05 24.5 6.4 85 27-112 9-125 (132)
54 2k75_A Uncharacterized protein 89.0 1.3 5.5E-05 23.6 8.3 68 30-106 11-85 (106)
55 2k50_A Replication factor A re 89.0 1.3 5.5E-05 23.6 10.1 75 34-111 18-108 (115)
56 1x54_A Asparaginyl-tRNA synthe 88.8 1.4 5.7E-05 23.5 7.6 75 33-110 17-97 (434)
57 1ta9_A Glycerol dehydrogenase; 88.5 0.61 2.6E-05 26.6 4.8 82 145-245 91-174 (450)
58 1ujn_A Dehydroquinate synthase 88.5 1.4 6E-05 23.3 7.4 91 141-245 24-115 (348)
59 3kqf_A Enoyl-COA hydratase/iso 88.3 0.97 4.1E-05 24.8 5.7 79 185-269 36-133 (265)
60 2x58_A Peroxisomal bifunctiona 88.2 1 4.3E-05 24.6 5.8 17 231-247 82-98 (727)
61 3fdu_A Putative enoyl-COA hydr 88.0 1.1 4.8E-05 24.2 5.9 78 186-269 33-130 (266)
62 3gkb_A Putative enoyl-COA hydr 87.9 1.3 5.4E-05 23.7 6.2 56 185-247 35-113 (287)
63 1q52_A MENB; lyase, structural 87.9 1 4.4E-05 24.5 5.7 78 185-269 64-178 (314)
64 3ce9_A Glycerol dehydrogenase; 87.8 1.2 5E-05 24.0 5.9 71 145-227 34-106 (354)
65 1sg4_A 3,2-trans-enoyl-COA iso 87.8 1.3 5.6E-05 23.6 6.2 77 186-269 32-128 (260)
66 3i47_A Enoyl COA hydratase/iso 87.8 1.3 5.6E-05 23.6 6.2 77 186-269 32-130 (268)
67 2gru_A 2-deoxy-scyllo-inosose 87.7 1.6 6.5E-05 23.0 10.5 88 145-245 34-125 (368)
68 2gtr_A CDY-like, chromodomain 87.7 1 4.4E-05 24.5 5.6 78 184-269 32-132 (261)
69 2pbp_A Enoyl-COA hydratase sub 87.5 1.1 4.5E-05 24.5 5.5 77 187-269 34-126 (258)
70 3dm3_A Replication factor A; p 87.5 1.6 6.7E-05 22.9 9.7 70 34-108 16-94 (105)
71 1l0w_A Aspartyl-tRNA synthetas 87.3 1.6 6.9E-05 22.8 8.8 79 33-113 17-102 (580)
72 3i7f_A Aspartyl-tRNA synthetas 87.2 1.7 7E-05 22.7 9.3 77 33-111 63-150 (548)
73 1kq3_A Glycerol dehydrogenase; 87.1 0.24 1E-05 30.3 2.0 83 146-250 42-133 (376)
74 3hp0_A Putative polyketide bio 87.0 1.5 6.3E-05 23.1 6.1 78 184-269 33-131 (267)
75 1nzy_A Dehalogenase, 4-chlorob 86.9 1.3 5.5E-05 23.6 5.8 77 185-268 30-130 (269)
76 1xah_A Sadhqs, 3-dehydroquinat 86.9 1.7 7.2E-05 22.6 6.6 84 146-244 32-120 (354)
77 2q35_A CURF; crotonase, lyase; 86.9 0.58 2.4E-05 26.8 3.9 78 185-269 30-121 (243)
78 1eqq_A Single stranded DNA bin 86.8 0.63 2.7E-05 26.5 4.1 69 31-100 5-95 (178)
79 2hmc_A AGR_L_411P, dihydrodipi 86.6 1.8 7.4E-05 22.5 8.3 21 229-251 168-188 (344)
80 3njd_A Enoyl-COA hydratase; ss 86.5 1.3 5.5E-05 23.6 5.5 39 231-269 148-188 (333)
81 2f6q_A Peroxisomal 3,2-trans-e 86.3 1.3 5.5E-05 23.6 5.5 40 230-269 111-152 (280)
82 3moy_A Probable enoyl-COA hydr 86.1 1.4 5.7E-05 23.5 5.5 80 184-269 36-131 (263)
83 3ome_A Enoyl-COA hydratase; ss 86.0 1.4 6.1E-05 23.3 5.6 76 187-269 52-151 (282)
84 3okf_A 3-dehydroquinate syntha 85.9 1.9 7.9E-05 22.2 9.8 144 65-260 16-164 (390)
85 3h0u_A Putative enoyl-COA hydr 85.8 1.3 5.6E-05 23.6 5.3 39 230-268 93-133 (289)
86 2xed_A Putative maleate isomer 85.7 1.9 7.8E-05 22.3 6.0 99 142-247 22-134 (273)
87 2vx2_A Enoyl-COA hydratase dom 85.7 1 4.3E-05 24.6 4.6 40 230-269 116-157 (287)
88 3h81_A Enoyl-COA hydratase ECH 85.6 0.87 3.7E-05 25.2 4.3 76 187-269 54-146 (278)
89 3lke_A Enoyl-COA hydratase; ny 85.3 1.9 7.8E-05 22.3 5.8 77 186-269 32-132 (263)
90 1n9w_A Aspartyl-tRNA synthetas 85.2 2 8.5E-05 22.0 10.5 78 24-111 5-85 (422)
91 2j5g_A ALR4455 protein; enzyme 85.2 1.7 7.2E-05 22.6 5.6 77 186-270 52-148 (263)
92 3n0v_A Formyltetrahydrofolate 85.2 2 8.5E-05 22.0 10.9 107 96-218 45-176 (286)
93 1hzd_A AUH, AU-binding protein 85.0 1.7 7.2E-05 22.6 5.6 80 184-269 38-136 (272)
94 3fdx_A Putative filament prote 85.0 1 4.3E-05 24.6 4.4 52 181-245 90-141 (143)
95 1a9x_B Carbamoyl phosphate syn 85.0 2.1 8.7E-05 21.9 7.4 86 140-250 185-272 (379)
96 3gjz_A Microcin immunity prote 84.8 2.1 8.8E-05 21.8 10.5 108 140-261 5-125 (336)
97 1wdk_A Fatty oxidation complex 84.8 2 8.3E-05 22.0 5.8 79 184-269 34-134 (715)
98 3a74_A Lysyl-tRNA synthetase; 84.5 2.1 9E-05 21.7 11.1 103 2-110 25-135 (493)
99 3clk_A Transcription regulator 84.5 2.2 9.1E-05 21.7 6.8 197 8-259 16-229 (290)
100 3myb_A Enoyl-COA hydratase; ss 84.4 2.2 9.1E-05 21.7 6.2 77 186-269 54-150 (286)
101 1e1o_A Lysyl-tRNA synthetase; 84.2 2.2 9.3E-05 21.6 12.9 104 3-112 34-146 (504)
102 3isa_A Putative enoyl-COA hydr 83.5 2.3 9.8E-05 21.4 6.4 78 184-269 33-129 (254)
103 3p5m_A Enoyl-COA hydratase/iso 83.0 2.4 0.0001 21.3 6.3 76 186-268 34-122 (255)
104 2ej5_A Enoyl-COA hydratase sub 82.9 2.5 0.0001 21.2 7.0 78 184-269 29-125 (257)
105 3g64_A Putative enoyl-COA hydr 82.8 2.5 0.0001 21.2 6.1 77 185-269 44-144 (279)
106 3ghg_B Fibrinogen beta chain; 82.6 2.5 0.00011 21.1 11.2 17 278-294 79-95 (461)
107 3clh_A 3-dehydroquinate syntha 82.5 1.6 6.9E-05 22.8 4.6 88 144-245 25-116 (343)
108 1ef8_A Methylmalonyl COA decar 82.4 2 8.5E-05 22.0 5.0 40 230-269 86-127 (261)
109 2og2_A Putative signal recogni 81.5 2.7 0.00011 20.8 5.8 17 221-237 342-358 (359)
110 1ynx_A Replication factor-A pr 81.4 1.1 4.7E-05 24.3 3.4 79 33-111 15-109 (114)
111 3l3s_A Enoyl-COA hydratase/iso 81.3 2.4 0.0001 21.3 5.1 76 186-269 34-135 (263)
112 3ot6_A Enoyl-COA hydratase/iso 81.2 2.4 0.0001 21.3 5.0 39 230-268 84-124 (232)
113 2uuu_A Alkyldihydroxyacetoneph 81.1 1.9 7.8E-05 22.3 4.5 20 442-461 562-581 (584)
114 3nem_A Aspartyl-tRNA synthetas 81.0 2.8 0.00012 20.7 7.1 72 33-108 17-95 (438)
115 1qzg_A Protection of telomeres 80.9 2.8 0.00012 20.7 9.7 70 35-106 45-126 (187)
116 2fep_A Catabolite control prot 80.7 2.9 0.00012 20.6 8.6 92 146-258 17-112 (289)
117 2fbm_A Y chromosome chromodoma 80.7 2.9 0.00012 20.6 6.1 79 183-269 49-150 (291)
118 3ju1_A Enoyl-COA hydratase/iso 80.4 2.9 0.00012 20.5 5.5 41 228-269 130-173 (407)
119 3huu_A Transcription regulator 80.2 3 0.00012 20.5 6.9 87 146-253 23-118 (305)
120 3he2_A Enoyl-COA hydratase ECH 80.2 2 8.6E-05 21.9 4.4 61 208-269 64-138 (264)
121 3g23_A Peptidase U61, LD-carbo 79.8 3 0.00013 20.4 6.9 79 145-227 3-87 (274)
122 2gkg_A Response regulator homo 78.7 3.2 0.00014 20.1 8.0 80 143-250 3-89 (127)
123 1pfk_A Phosphofructokinase; tr 78.7 3.3 0.00014 20.1 8.6 109 144-271 1-145 (320)
124 3oxn_A Putative transcriptiona 78.5 3.3 0.00014 20.1 5.9 103 131-261 10-116 (241)
125 3b9q_A Chloroplast SRP recepto 78.5 3.3 0.00014 20.1 5.3 17 221-237 285-301 (302)
126 1mj3_A Enoyl-COA hydratase, mi 78.4 1 4.4E-05 24.5 2.5 76 187-269 36-128 (260)
127 3m3p_A Glutamine amido transfe 78.1 3.2 0.00013 20.2 4.9 10 82-91 48-57 (250)
128 1xjv_A Protection of telomeres 77.7 3.4 0.00014 19.9 10.2 71 35-107 18-94 (294)
129 3ghg_C Fibrinogen gamma chain; 77.5 3.5 0.00015 19.9 10.0 14 279-292 23-36 (411)
130 3ixl_A Amdase, arylmalonate de 77.3 1.9 8.2E-05 22.1 3.6 16 145-160 117-132 (240)
131 1eov_A ASPRS, aspartyl-tRNA sy 77.2 3.5 0.00015 19.8 11.0 76 33-110 37-126 (487)
132 2d00_A V-type ATP synthase sub 76.9 1 4.3E-05 24.6 2.1 78 144-247 2-79 (109)
133 3k9c_A Transcriptional regulat 76.7 3.6 0.00015 19.7 7.1 75 145-240 126-208 (289)
134 3d0c_A Dihydrodipicolinate syn 76.3 3.7 0.00016 19.6 4.8 38 154-194 120-157 (314)
135 3bpp_A 1510-N membrane proteas 75.8 3.8 0.00016 19.5 5.7 74 185-270 22-102 (230)
136 2qy9_A Cell division protein F 75.5 3.9 0.00016 19.4 5.6 17 222-238 284-300 (309)
137 3ca8_A Protein YDCF; two domai 74.3 4 0.00017 19.3 4.5 55 207-265 35-89 (266)
138 1jmc_A Protein (replication pr 74.3 1.9 7.8E-05 22.3 2.8 61 33-93 19-87 (246)
139 3brq_A HTH-type transcriptiona 73.3 4.3 0.00018 19.0 7.8 90 146-254 20-115 (296)
140 2qh8_A Uncharacterized protein 73.0 4.4 0.00018 19.0 5.2 83 146-246 141-226 (302)
141 1yo3_A Dynein light chain 1; s 72.7 3.3 0.00014 20.1 3.8 48 18-71 49-101 (102)
142 1c0a_A Aspartyl tRNA synthetas 72.6 4.5 0.00019 18.9 8.6 77 33-111 16-102 (585)
143 3do6_A Formate--tetrahydrofola 71.9 4.6 0.00019 18.8 6.0 56 195-250 297-370 (543)
144 3nrb_A Formyltetrahydrofolate 71.7 4.6 0.0002 18.7 12.0 73 97-175 45-119 (287)
145 2vk2_A YTFQ, ABC transporter p 71.6 4.7 0.0002 18.7 9.5 162 62-261 57-238 (306)
146 3gv0_A Transcriptional regulat 71.3 4.7 0.0002 18.7 6.2 143 62-248 65-224 (288)
147 1zxx_A 6-phosphofructokinase; 71.3 4.7 0.0002 18.7 9.0 94 145-255 1-130 (319)
148 1nfn_A Apolipoprotein E3; lipi 70.4 4.9 0.00021 18.5 11.6 36 412-447 151-186 (191)
149 3lou_A Formyltetrahydrofolate 70.0 5 0.00021 18.4 10.4 58 113-176 69-127 (292)
150 2ywj_A Glutamine amidotransfer 69.7 3.2 0.00013 20.2 3.2 72 147-245 2-73 (186)
151 1dm9_A Hypothetical 15.5 KD pr 69.7 4.8 0.0002 18.6 4.1 43 457-502 30-72 (133)
152 2iss_D Glutamine amidotransfer 69.4 5.1 0.00022 18.3 4.9 71 146-244 21-95 (208)
153 3p85_A Enoyl-COA hydratase; ss 69.3 1.5 6.1E-05 23.2 1.4 78 186-269 53-139 (270)
154 2rgy_A Transcriptional regulat 69.2 5.2 0.00022 18.3 8.6 28 182-214 168-195 (290)
155 3glc_A Aldolase LSRF; TIM barr 68.6 5.3 0.00022 18.2 7.9 85 157-261 155-242 (295)
156 3kkl_A Probable chaperone prot 68.5 5.1 0.00022 18.4 4.0 44 207-253 97-143 (244)
157 2pfs_A USP, universal stress p 68.5 5.3 0.00022 18.3 4.1 49 184-245 95-144 (150)
158 3l49_A ABC sugar (ribose) tran 68.4 5.3 0.00022 18.2 10.8 89 145-252 5-97 (291)
159 1vhq_A Enhancing lycopene bios 68.3 5.4 0.00023 18.2 5.7 107 145-253 6-145 (232)
160 2ewv_A Twitching motility prot 68.3 5.4 0.00023 18.2 6.3 131 90-252 94-245 (372)
161 3bpt_A 3-hydroxyisobutyryl-COA 68.2 5.4 0.00023 18.2 6.1 74 187-269 35-133 (363)
162 2h31_A Multifunctional protein 67.2 5.6 0.00024 18.0 14.3 137 106-271 235-375 (425)
163 3e61_A Putative transcriptiona 67.2 5.6 0.00024 18.0 9.1 80 146-246 9-92 (277)
164 2fvy_A D-galactose-binding per 66.8 5.7 0.00024 17.9 10.9 89 146-253 3-96 (309)
165 1u9c_A APC35852; structural ge 66.5 5.8 0.00024 17.9 6.4 68 207-276 88-164 (224)
166 1mjh_A Protein (ATP-binding do 66.5 5.8 0.00024 17.9 5.5 70 158-245 84-156 (162)
167 3k7u_C MP18 RNA editing comple 66.4 5.8 0.00024 17.9 4.6 63 32-94 6-85 (148)
168 1f0k_A MURG, UDP-N-acetylgluco 66.3 4.2 0.00018 19.1 3.2 41 209-264 255-301 (364)
169 3hgm_A Universal stress protei 66.1 5.9 0.00025 17.8 5.0 52 182-245 94-146 (147)
170 1sg6_A Pentafunctional AROM po 66.0 5.9 0.00025 17.8 6.9 91 145-245 36-136 (393)
171 3h5d_A DHDPS, dihydrodipicolin 66.0 5.9 0.00025 17.8 4.8 105 123-259 94-201 (311)
172 1nnx_A Protein YGIW; structura 65.9 5.9 0.00025 17.8 7.6 69 33-110 38-106 (109)
173 1tq8_A Hypothetical protein RV 65.8 5.9 0.00025 17.8 5.0 53 180-245 101-155 (163)
174 1jb7_A Telomere-binding protei 65.6 6 0.00025 17.8 9.8 70 34-105 51-138 (495)
175 3pfk_A Phosphofructokinase; tr 65.1 6.1 0.00026 17.7 7.7 93 146-255 2-130 (319)
176 2h0a_A TTHA0807, transcription 64.4 5.1 0.00021 18.4 3.4 187 8-248 7-216 (276)
177 2csu_A 457AA long hypothetical 64.4 6.2 0.00026 17.6 12.9 106 131-253 131-242 (457)
178 3n7t_A Macrophage binding prot 63.8 6.4 0.00027 17.5 4.3 46 207-253 104-150 (247)
179 1zl0_A Hypothetical protein PA 63.7 6.4 0.00027 17.5 8.1 80 146-231 18-103 (311)
180 2p0y_A Hypothetical protein LP 63.4 6.5 0.00027 17.4 8.7 133 113-263 110-249 (341)
181 2zsk_A PH1733, 226AA long hypo 62.9 6.6 0.00028 17.4 5.4 88 146-247 2-103 (226)
182 1qdl_B Protein (anthranilate s 62.9 6.6 0.00028 17.4 4.7 80 146-244 2-81 (195)
183 1y80_A Predicted cobalamin bin 62.5 6.7 0.00028 17.3 7.6 73 187-274 128-205 (210)
184 1rw7_A YDR533CP; alpha-beta sa 62.1 6.8 0.00029 17.3 3.8 67 207-276 97-174 (243)
185 3hin_A Putative 3-hydroxybutyr 62.0 5.4 0.00023 18.2 3.1 40 230-269 96-137 (275)
186 3hcw_A Maltose operon transcri 61.9 6.8 0.00029 17.2 8.9 156 62-259 67-236 (295)
187 1no5_A Hypothetical protein HI 61.5 6.9 0.00029 17.2 5.6 61 159-242 14-75 (114)
188 1ytl_A Acetyl-COA decarbonylas 61.5 6.9 0.00029 17.2 4.8 17 230-246 51-67 (174)
189 1wyd_A Hypothetical aspartyl-t 61.3 7 0.00029 17.2 9.1 75 33-110 17-94 (429)
190 2i4r_A V-type ATP synthase sub 61.1 6.9 0.00029 17.2 3.5 90 145-259 9-99 (102)
191 3nyb_A Poly(A) RNA polymerase 61.0 7 0.0003 17.1 3.9 45 158-220 45-90 (323)
192 3lao_A Enoyl-COA hydratase/iso 60.9 2.6 0.00011 21.0 1.3 79 185-269 39-136 (258)
193 3obi_A Formyltetrahydrofolate 60.9 7.1 0.0003 17.1 13.3 72 96-174 43-119 (288)
194 3l6u_A ABC-type sugar transpor 60.6 7.1 0.0003 17.1 11.0 20 9-30 17-36 (293)
195 3kip_A 3-dehydroquinase, type 60.6 7.2 0.0003 17.1 9.8 85 143-245 12-114 (167)
196 3eqz_A Response regulator; str 60.2 7.2 0.0003 17.0 5.2 82 146-253 4-89 (135)
197 2uyg_A 3-dehydroquinate dehydr 60.1 7.3 0.00031 17.0 7.5 69 159-245 26-97 (149)
198 2bvf_A 6-hydroxy-D-nicotine ox 59.5 6.6 0.00028 17.4 3.2 25 14-39 45-69 (459)
199 2wtb_A MFP2, fatty acid multif 59.2 2.5 0.00011 21.1 1.0 29 16-44 35-64 (725)
200 3l3b_A ES1 family protein; ssg 59.2 7.5 0.00032 16.9 5.4 117 131-251 10-161 (242)
201 3olq_A Universal stress protei 58.7 7.6 0.00032 16.8 9.0 54 183-249 96-151 (319)
202 2c92_A 6,7-dimethyl-8-ribityll 58.3 7.7 0.00032 16.8 9.9 85 146-248 18-117 (160)
203 3aek_B Light-independent proto 58.3 7.7 0.00032 16.8 9.4 109 145-259 86-200 (525)
204 3ezx_A MMCP 1, monomethylamine 57.6 7.9 0.00033 16.7 7.7 109 148-274 94-211 (215)
205 2nv0_A Glutamine amidotransfer 57.5 7.9 0.00033 16.7 4.5 72 146-244 2-76 (196)
206 2crl_A Copper chaperone for su 57.5 4.4 0.00018 18.9 2.0 60 157-226 31-95 (98)
207 3k4h_A Putative transcriptiona 57.0 8.1 0.00034 16.6 8.9 12 18-29 29-40 (292)
208 2qu7_A Putative transcriptiona 57.0 8.1 0.00034 16.6 8.2 152 62-259 62-231 (288)
209 1ylq_A Putative nucleotidyltra 56.9 8.1 0.00034 16.6 3.6 49 159-224 4-53 (96)
210 3idf_A USP-like protein; unive 56.1 7.2 0.0003 17.0 2.9 35 208-245 101-136 (138)
211 1m1j_A Fibrinogen alpha subuni 55.8 8.4 0.00035 16.4 15.4 42 250-292 31-74 (491)
212 1mvo_A PHOP response regulator 55.7 8.4 0.00035 16.4 9.5 85 144-255 2-90 (136)
213 1uqr_A 3-dehydroquinate dehydr 55.6 8.4 0.00035 16.4 6.7 81 146-245 2-98 (154)
214 1w8s_A FBP aldolase, fructose- 55.3 8.5 0.00036 16.4 8.6 93 155-263 120-221 (263)
215 3opy_B 6-phosphofructo-1-kinas 55.1 8.6 0.00036 16.4 6.2 98 144-248 180-330 (941)
216 3bbl_A Regulatory protein of L 54.9 8.6 0.00036 16.3 5.5 31 62-92 63-96 (287)
217 3g85_A Transcriptional regulat 54.9 7.3 0.00031 17.0 2.8 189 17-260 27-235 (289)
218 1o1y_A Conserved hypothetical 54.8 8.7 0.00036 16.3 5.4 37 208-244 57-97 (239)
219 3eod_A Protein HNR; response r 54.4 8.8 0.00037 16.3 8.8 89 142-257 4-96 (130)
220 8abp_A L-arabinose-binding pro 54.2 8.8 0.00037 16.2 9.7 15 231-245 73-87 (306)
221 1jfl_A Aspartate racemase; alp 54.1 8.8 0.00037 16.2 6.8 86 146-247 2-104 (228)
222 1dbq_A Purine repressor; trans 54.0 8.9 0.00037 16.2 7.9 60 146-216 8-71 (289)
223 1f0x_A DLDH, D-lactate dehydro 54.0 8.9 0.00037 16.2 3.4 13 450-462 546-558 (571)
224 2w3p_A Benzoyl-COA-dihydrodiol 53.8 8.9 0.00038 16.2 6.1 14 234-247 123-136 (556)
225 3m9w_A D-xylose-binding peripl 53.7 9 0.00038 16.2 9.6 83 146-246 3-89 (313)
226 2abw_A PDX2 protein, glutamina 53.6 8.9 0.00037 16.2 3.1 72 147-244 5-84 (227)
227 2xdq_B Light-independent proto 53.6 9 0.00038 16.2 10.2 103 144-248 88-204 (511)
228 2o2z_A Hypothetical protein; N 53.4 9 0.00038 16.1 5.4 110 137-262 122-238 (323)
229 1wot_A Putative minimal nucleo 53.4 6.7 0.00028 17.3 2.4 53 160-230 13-66 (98)
230 3n8k_A 3-dehydroquinate dehydr 53.3 9.1 0.00038 16.1 7.6 81 146-245 29-125 (172)
231 3lgj_A Single-stranded DNA-bin 53.2 4.1 0.00017 19.2 1.3 77 32-109 23-126 (169)
232 3kf8_A Protein STN1; OB fold; 52.7 9.3 0.00039 16.1 13.4 124 5-128 41-201 (220)
233 3hj4_A Minor editosome-associa 52.3 9.4 0.00039 16.0 6.1 82 152-251 21-124 (384)
234 3bch_A 40S ribosomal protein S 52.2 8 0.00034 16.6 2.6 66 207-296 150-215 (253)
235 1xrs_B D-lysine 5,6-aminomutas 52.1 9.4 0.0004 16.0 6.4 79 169-264 154-239 (262)
236 3h5i_A Response regulator/sens 52.1 9.4 0.0004 16.0 8.6 80 146-251 6-89 (140)
237 3brc_A Conserved protein of un 51.7 9.5 0.0004 15.9 4.5 81 113-217 19-101 (156)
238 3gl9_A Response regulator; bet 51.3 9.7 0.00041 15.9 9.1 83 145-254 2-90 (122)
239 2i0f_A 6,7-dimethyl-8-ribityll 51.3 9.7 0.00041 15.9 11.2 91 147-247 14-117 (157)
240 2rff_A Putative nucleotidyltra 51.3 9.7 0.00041 15.9 4.0 42 158-217 18-61 (111)
241 1wjj_A Hypothetical protein F2 51.0 9.7 0.00041 15.9 7.2 55 53-113 64-122 (145)
242 2gm3_A Unknown protein; AT3G01 50.9 9.8 0.00041 15.9 4.5 69 159-245 89-160 (175)
243 1lcy_A HTRA2 serine protease; 50.9 9.8 0.00041 15.8 4.7 43 450-493 264-313 (325)
244 2ql3_A Probable transcriptiona 50.5 9.9 0.00042 15.8 5.9 55 146-216 7-62 (209)
245 2dfs_A Myosin-5A; myosin-V, in 50.1 10 0.00042 15.7 17.1 19 157-175 685-703 (1080)
246 1gpw_B Amidotransferase HISH; 48.8 10 0.00044 15.6 6.4 43 207-250 41-88 (201)
247 2bon_A Lipid kinase; DAG kinas 47.8 11 0.00045 15.5 8.7 18 179-196 87-104 (332)
248 2k7i_A UPF0339 protein ATU0232 47.2 5.9 0.00025 17.8 1.3 18 49-66 31-48 (83)
249 2h2w_A Homoserine O-succinyltr 47.1 11 0.00046 15.4 9.4 89 124-215 24-118 (312)
250 2q7x_A UPF0052 protein SP_1565 47.0 11 0.00046 15.4 9.7 127 118-262 110-244 (326)
251 3bbn_B Ribosomal protein S2; s 47.0 11 0.00045 15.5 2.6 65 207-295 156-220 (231)
252 1kny_A Kntase, kanamycin nucle 46.9 7.7 0.00033 16.8 1.9 81 158-268 15-98 (253)
253 2hig_A 6-phospho-1-fructokinas 46.7 11 0.00047 15.3 7.2 54 191-255 179-232 (487)
254 1h05_A 3-dehydroquinate dehydr 46.6 11 0.00047 15.3 7.8 69 158-245 28-99 (146)
255 2w36_A Endonuclease V; hypoxan 45.9 11 0.00047 15.4 2.6 35 241-275 177-217 (225)
256 3c5v_A PME-1, protein phosphat 45.7 9.1 0.00038 16.1 2.1 17 113-129 90-106 (316)
257 2bw0_A 10-FTHFDH, 10-formyltet 45.4 6.2 0.00026 17.6 1.2 63 147-219 48-110 (329)
258 1gqo_A Dehydroquinase, dhqase; 45.2 12 0.00049 15.2 7.7 68 159-245 27-97 (143)
259 3nhm_A Response regulator; pro 44.9 12 0.00049 15.1 3.7 76 147-250 6-87 (133)
260 3ojc_A Putative aspartate/glut 44.7 12 0.0005 15.1 5.6 84 145-245 2-104 (231)
261 1xky_A Dihydrodipicolinate syn 44.7 12 0.0005 15.1 8.5 78 154-248 121-199 (301)
262 2q5c_A NTRC family transcripti 44.5 12 0.0005 15.1 5.4 58 146-220 5-62 (196)
263 3c1m_A Probable aspartokinase; 44.5 12 0.0005 15.1 6.4 41 216-259 7-53 (473)
264 1ka9_H Imidazole glycerol phos 44.4 12 0.0005 15.1 5.5 44 207-251 39-87 (200)
265 2f48_A Diphosphate--fructose-6 43.8 12 0.00051 15.0 8.0 93 143-245 70-200 (555)
266 2np9_A DPGC; protein inhibitor 43.7 7.7 0.00032 16.8 1.5 35 235-269 279-315 (440)
267 3ch4_B Pmkase, phosphomevalona 43.7 11 0.00045 15.5 2.2 33 140-172 5-37 (202)
268 3fij_A LIN1909 protein; 11172J 43.6 12 0.00052 15.0 7.9 35 209-244 62-112 (254)
269 1q77_A Hypothetical protein AQ 43.4 7.9 0.00033 16.7 1.5 44 181-245 93-136 (138)
270 2etv_A Iron(III) ABC transport 43.4 12 0.00052 15.0 5.3 21 136-156 17-37 (346)
271 1q7r_A Predicted amidotransfer 43.4 12 0.00052 15.0 5.3 73 144-244 22-98 (219)
272 3kke_A LACI family transcripti 43.4 12 0.00052 14.9 7.8 30 62-91 70-102 (303)
273 3bid_A UPF0339 protein NMB1088 43.3 12 0.00052 14.9 3.0 18 49-66 9-26 (64)
274 3d8u_A PURR transcriptional re 42.9 12 0.00053 14.9 8.6 195 8-259 11-225 (275)
275 2wkj_A N-acetylneuraminate lya 42.8 13 0.00053 14.9 7.8 23 15-37 29-51 (303)
276 2h4a_A YRAM (HI1655); perplasm 42.7 13 0.00053 14.9 7.1 25 463-495 291-315 (325)
277 3jv9_A OXYR, transcriptional r 42.5 13 0.00053 14.9 6.5 82 144-249 4-86 (219)
278 3ho7_A OXYR; beta-alpha-barrel 42.5 13 0.00053 14.8 5.7 82 145-250 12-94 (232)
279 2iks_A DNA-binding transcripti 42.3 13 0.00053 14.8 9.0 142 62-248 75-233 (293)
280 2vrn_A Protease I, DR1199; cys 42.3 13 0.00053 14.8 3.1 59 207-268 74-136 (190)
281 2ywd_A Glutamine amidotransfer 42.3 13 0.00054 14.8 4.9 71 147-244 4-78 (191)
282 3ofo_I 30S ribosomal protein S 42.3 11 0.00047 15.4 2.1 28 207-239 56-83 (127)
283 2oda_A Hypothetical protein ps 42.3 13 0.00054 14.8 7.2 139 121-294 42-192 (196)
284 2duw_A Putative COA-binding pr 42.2 13 0.00054 14.8 5.7 67 144-224 12-86 (145)
285 3da8_A Probable 5'-phosphoribo 42.0 13 0.00054 14.8 9.5 35 141-175 8-42 (215)
286 3egc_A Putative ribose operon 41.8 13 0.00054 14.8 7.9 20 9-30 17-36 (291)
287 2f9i_B Acetyl-coenzyme A carbo 41.8 13 0.00054 14.8 5.8 13 224-236 227-239 (285)
288 2dgd_A 223AA long hypothetical 41.6 13 0.00055 14.7 7.6 69 145-221 5-79 (223)
289 2a9v_A GMP synthase; NP_394403 41.4 13 0.00055 14.7 6.0 83 139-244 7-89 (212)
290 1byk_A Protein (trehalose oper 41.1 13 0.00056 14.7 7.3 193 8-259 10-213 (255)
291 3goc_A Endonuclease V; alpha-b 40.9 11 0.00046 15.4 1.9 35 241-275 181-220 (237)
292 3opy_A 6-phosphofructo-1-kinas 40.9 13 0.00056 14.7 7.3 97 144-247 209-357 (989)
293 1znw_A Guanylate kinase, GMP k 40.9 12 0.00053 14.9 2.2 45 142-186 16-68 (207)
294 2k5n_A Putative cold-shock pro 40.7 13 0.00056 14.6 3.4 55 36-99 2-56 (74)
295 1sr3_A APO-CCME; OB fold, beta 40.7 13 0.00056 14.6 8.8 85 14-108 8-97 (136)
296 1ak2_A Adenylate kinase isoenz 40.7 10 0.00044 15.6 1.8 36 138-173 7-43 (233)
297 3lwz_A 3-dehydroquinate dehydr 40.6 13 0.00056 14.6 8.1 81 146-245 8-104 (153)
298 1xu9_A Corticosteroid 11-beta- 40.5 13 0.00057 14.6 8.1 112 77-235 20-133 (286)
299 1i6a_A OXYR, hydrogen peroxide 40.4 13 0.00057 14.6 6.1 81 146-250 7-88 (219)
300 2x4i_A CAG38848, uncharacteriz 39.7 14 0.00058 14.5 2.4 37 228-266 28-64 (114)
301 3miz_A Putative transcriptiona 39.7 5.8 0.00024 17.9 0.3 137 80-258 89-240 (301)
302 2ppv_A Uncharacterized protein 39.6 14 0.00058 14.5 6.5 124 118-262 107-237 (332)
303 2j6b_A AFV3-109; sulfolobus, c 39.5 11 0.00048 15.3 1.8 12 242-253 38-49 (109)
304 1di0_A Lumazine synthase; tran 39.3 14 0.00059 14.5 9.4 93 145-248 10-114 (158)
305 2ov6_A V-type ATP synthase sub 39.1 14 0.00059 14.4 3.1 77 147-248 2-78 (101)
306 3hzh_A Chemotaxis response reg 39.1 14 0.00059 14.4 8.2 84 143-250 34-123 (157)
307 1vhc_A Putative KHG/KDPG aldol 39.0 14 0.00059 14.4 4.5 84 147-249 19-119 (224)
308 2vc6_A MOSA, dihydrodipicolina 38.8 14 0.0006 14.4 6.3 77 154-247 109-187 (292)
309 2jba_A Phosphate regulon trans 38.7 14 0.0006 14.4 5.6 85 145-254 2-90 (127)
310 2fn9_A Ribose ABC transporter, 38.7 14 0.0006 14.4 10.7 10 81-90 81-90 (290)
311 3c97_A Signal transduction his 38.7 14 0.0006 14.4 9.4 86 140-252 5-99 (140)
312 1eg7_A Formyltetrahydrofolate 38.7 14 0.0006 14.4 6.0 57 196-252 312-387 (557)
313 1bg1_A Protein (transcription 38.6 14 0.0006 14.4 10.1 30 267-296 4-33 (596)
314 3khj_A Inosine-5-monophosphate 38.5 14 0.0006 14.4 7.9 91 147-255 119-222 (361)
315 2ogx_B Molybdenum storage prot 38.2 14 0.00061 14.3 2.2 12 212-223 72-83 (270)
316 1ttz_A Conserved hypothetical 38.2 12 0.0005 15.1 1.7 32 209-241 46-77 (87)
317 3ksm_A ABC-type sugar transpor 38.1 14 0.00061 14.3 8.5 158 63-260 59-231 (276)
318 3pfn_A NAD kinase; structural 38.0 15 0.00061 14.3 5.3 96 142-247 35-138 (365)
319 1mkz_A Molybdenum cofactor bio 37.7 15 0.00062 14.3 8.0 72 140-221 5-81 (172)
320 2r8w_A AGR_C_1641P; APC7498, d 37.5 15 0.00062 14.2 8.9 41 154-194 143-184 (332)
321 2k6p_A Uncharacterized protein 37.3 12 0.00051 15.0 1.7 43 456-501 21-63 (92)
322 2wdx_A Putative hexose oxidase 37.3 15 0.00062 14.2 2.3 24 15-39 65-88 (523)
323 1wy5_A TILS, hypothetical UPF0 37.1 15 0.00063 14.2 8.6 123 118-255 6-139 (317)
324 1me8_A Inosine-5'-monophosphat 36.7 13 0.00054 14.8 1.7 60 149-222 258-319 (503)
325 3na7_A HP0958; flagellar bioge 36.6 15 0.00064 14.1 20.9 36 459-494 188-231 (256)
326 3ke8_A 4-hydroxy-3-methylbut-2 36.6 14 0.0006 14.4 1.9 105 142-270 165-284 (326)
327 3i42_A Response regulator rece 36.4 15 0.00064 14.1 7.9 83 146-253 4-90 (127)
328 3bbn_I Ribosomal protein S9; s 36.2 13 0.00057 14.6 1.8 31 207-238 126-156 (197)
329 2p10_A MLL9387 protein; putati 36.0 9.6 0.0004 15.9 1.0 34 6-42 4-37 (286)
330 2c4w_A 3-dehydroquinate dehydr 35.9 15 0.00065 14.1 8.3 82 146-245 10-109 (176)
331 2vqe_I 30S ribosomal protein S 35.8 14 0.00058 14.5 1.8 32 207-239 57-88 (128)
332 2ojp_A DHDPS, dihydrodipicolin 35.8 16 0.00065 14.0 7.9 92 154-267 110-204 (292)
333 2h3h_A Sugar ABC transporter, 35.5 16 0.00066 14.0 8.1 46 207-261 181-227 (313)
334 3fyf_A Protein BVU-3222; struc 35.4 16 0.00066 14.0 5.1 60 33-92 98-164 (176)
335 2zkq_i 40S ribosomal protein S 35.3 13 0.00056 14.6 1.6 32 207-239 64-95 (146)
336 2zkq_b 40S ribosomal protein S 35.2 16 0.00067 14.0 2.4 66 207-296 117-182 (295)
337 1kxf_A Sindbis virus capsid pr 35.1 3.6 0.00015 19.8 -1.3 43 458-502 102-146 (264)
338 3cs3_A Sugar-binding transcrip 34.9 16 0.00067 13.9 7.3 191 8-260 16-222 (277)
339 2vsy_A XCC0866; transferase, g 34.7 16 0.00068 13.9 9.2 101 142-261 202-334 (568)
340 1kgd_A CASK, peripheral plasma 34.7 16 0.00068 13.9 2.4 87 144-245 3-102 (180)
341 1ky9_A Protease DO, DEGP, HTRA 34.7 16 0.00066 14.0 1.9 13 80-92 158-170 (448)
342 2b4a_A BH3024; 10175646, struc 34.7 16 0.00068 13.9 8.8 84 143-250 13-98 (138)
343 1vi6_A 30S ribosomal protein S 34.5 16 0.00068 13.9 2.7 132 115-296 48-179 (208)
344 1tjy_A Sugar transport protein 34.5 16 0.00068 13.9 9.4 84 146-246 4-91 (316)
345 3c3d_A 2-phospho-L-lactate tra 34.4 16 0.00068 13.9 7.6 118 114-249 107-225 (311)
346 3aek_A Light-independent proto 34.1 16 0.00069 13.8 7.9 127 96-249 79-217 (437)
347 3eh7_A 4-hydroxybutyrate COA-t 34.0 12 0.00049 15.1 1.2 32 243-274 381-413 (434)
348 3dnf_A ISPH, LYTB, 4-hydroxy-3 33.9 17 0.0007 13.8 5.8 106 144-271 155-271 (297)
349 3jyv_I 40S ribosomal protein S 33.9 16 0.00068 13.9 1.8 28 207-239 56-83 (138)
350 3jyv_B 40S ribosomal protein S 33.9 14 0.00059 14.5 1.5 104 113-259 39-151 (193)
351 2an1_A Putative kinase; struct 33.9 13 0.00054 14.8 1.4 55 212-269 131-186 (292)
352 3fn2_A Putative sensor histidi 33.8 17 0.0007 13.8 3.0 34 458-492 47-80 (106)
353 1wvf_A 4-cresol dehydrogenase 33.8 17 0.0007 13.8 2.3 17 445-461 494-510 (520)
354 2vdj_A Homoserine O-succinyltr 33.5 17 0.0007 13.8 5.6 88 124-215 12-106 (301)
355 3bcz_A Protein MEMO1; alpha/be 33.4 17 0.00071 13.8 2.0 47 166-227 140-189 (293)
356 1s3a_A NADH-ubiquinone oxidore 33.0 17 0.00071 13.7 2.5 27 152-178 29-60 (102)
357 2rk3_A Protein DJ-1; parkinson 33.0 17 0.00072 13.7 3.3 98 144-251 2-109 (197)
358 1jmv_A USPA, universal stress 32.9 17 0.00072 13.7 5.5 47 185-245 89-135 (141)
359 2k6l_A Putative uncharacterize 32.8 11 0.00048 15.3 0.9 24 215-238 24-47 (51)
360 3grc_A Sensor protein, kinase; 32.7 17 0.00072 13.7 8.3 80 147-251 8-91 (140)
361 3ot1_A 4-methyl-5(B-hydroxyeth 32.7 17 0.00072 13.7 4.3 93 144-247 8-111 (208)
362 2ozp_A N-acetyl-gamma-glutamyl 32.6 17 0.00073 13.6 5.4 95 147-267 6-107 (345)
363 3igs_A N-acetylmannosamine-6-p 32.3 17 0.00073 13.6 4.4 77 157-251 116-192 (232)
364 2z08_A Universal stress protei 32.2 17 0.00074 13.6 4.6 54 181-245 82-135 (137)
365 2zxi_A TRNA uridine 5-carboxym 31.9 16 0.00069 13.8 1.6 63 183-253 300-374 (637)
366 3gra_A Transcriptional regulat 31.6 18 0.00075 13.5 2.6 34 144-177 4-44 (202)
367 2uyt_A Rhamnulokinase; rhamnos 31.4 18 0.00075 13.5 3.3 15 16-30 52-66 (489)
368 3lua_A Response regulator rece 31.4 18 0.00075 13.5 3.1 86 146-257 5-98 (140)
369 1tmy_A CHEY protein, TMY; chem 31.4 18 0.00075 13.5 7.3 86 145-254 2-89 (120)
370 3f8d_A Thioredoxin reductase ( 31.3 15 0.00061 14.3 1.3 31 13-44 65-95 (323)
371 2yv4_A Hypothetical protein PH 31.2 18 0.00076 13.5 5.7 61 145-238 31-92 (105)
372 1y1u_A Signal transducer and a 31.1 18 0.00076 13.5 11.1 21 275-295 11-31 (585)
373 2iu8_A LPXD, UDP-3-O-[3-hydrox 31.0 16 0.00067 13.9 1.4 49 5-56 16-64 (374)
374 3ist_A Glutamate racemase; str 31.0 18 0.00077 13.4 4.9 90 145-247 5-98 (269)
375 2f9y_B Acetyl-coenzyme A carbo 30.8 18 0.00077 13.4 5.8 27 212-242 216-242 (304)
376 1rj9_A FTSY, signal recognitio 30.8 18 0.00077 13.4 5.9 75 170-274 220-301 (304)
377 3ga2_A Endonuclease V; alpha-b 30.6 18 0.00077 13.4 2.6 53 221-274 165-225 (246)
378 1cjy_A CPLA2, protein (cytosol 30.4 12 0.00051 15.0 0.7 41 219-259 289-344 (749)
379 2k49_A UPF0339 protein SO_3888 30.3 19 0.00078 13.3 3.1 16 49-64 11-26 (118)
380 2jky_A Hypoxanthine-guanine ph 30.3 14 0.00058 14.5 1.0 29 97-126 100-128 (213)
381 3kyj_B CHEY6 protein, putative 30.2 19 0.00079 13.3 8.2 96 139-257 7-106 (145)
382 3eph_A TRNA isopentenyltransfe 29.9 19 0.00079 13.3 2.6 31 146-176 2-32 (409)
383 3dz1_A Dihydrodipicolinate syn 29.9 19 0.00079 13.3 8.3 78 156-248 117-201 (313)
384 1mb3_A Cell division response 29.5 19 0.0008 13.2 9.1 80 146-250 2-85 (124)
385 3iox_A AGI/II, PA; alpha helix 29.4 19 0.00081 13.2 13.5 16 279-294 5-20 (497)
386 3gyb_A Transcriptional regulat 29.4 19 0.00081 13.2 5.0 83 146-248 119-212 (280)
387 3ofo_B 30S ribosomal protein S 29.3 19 0.00081 13.2 2.7 44 207-259 148-191 (218)
388 1u0t_A Inorganic polyphosphate 29.2 19 0.00081 13.2 5.1 20 212-231 143-162 (307)
389 3bio_A Oxidoreductase, GFO/IDH 29.1 19 0.00081 13.2 5.6 86 147-248 11-97 (304)
390 2vqe_B 30S ribosomal protein S 29.1 19 0.00081 13.2 2.5 66 207-296 157-222 (256)
391 3k81_C MP18 RNA editing comple 29.1 19 0.00082 13.2 3.9 64 30-93 20-100 (164)
392 3d6n_B Aspartate carbamoyltran 29.1 19 0.00082 13.2 8.8 18 11-28 6-23 (291)
393 3o1l_A Formyltetrahydrofolate 29.1 19 0.00082 13.2 14.7 74 96-175 59-136 (302)
394 2pju_A Propionate catabolism o 29.0 19 0.00082 13.2 6.2 85 101-223 81-166 (225)
395 2pl1_A Transcriptional regulat 28.9 20 0.00082 13.2 9.4 83 147-256 2-88 (121)
396 1y5e_A Molybdenum cofactor bio 28.7 20 0.00082 13.1 6.9 77 136-223 5-86 (169)
397 3iyd_F RNA polymerase sigma fa 28.7 6.3 0.00026 17.6 -1.0 10 35-44 21-30 (613)
398 2oas_A ATOA, 4-hydroxybutyrate 28.4 14 0.00058 14.5 0.7 32 243-274 372-404 (436)
399 2g2c_A Putative molybdenum cof 28.3 20 0.00084 13.1 6.8 65 146-220 6-81 (167)
400 2hsg_A Glucose-resistance amyl 28.0 20 0.00085 13.1 7.4 22 146-167 61-83 (332)
401 1mio_B Nitrogenase molybdenum 27.9 20 0.00085 13.0 8.7 139 82-244 36-199 (458)
402 2j85_A STIV B116; viral protei 27.9 13 0.00055 14.7 0.5 11 78-88 73-83 (122)
403 2zgy_A Plasmid segregation pro 27.8 20 0.00085 13.0 3.0 21 209-229 163-183 (320)
404 1fec_A Trypanothione reductase 27.6 15 0.00063 14.2 0.8 38 140-178 182-220 (490)
405 3d02_A Putative LACI-type tran 27.4 21 0.00086 13.0 9.5 82 146-245 5-91 (303)
406 2obx_A DMRL synthase 1, 6,7-di 27.4 21 0.00086 13.0 9.2 94 144-248 10-115 (157)
407 2k8e_A UPF0339 protein YEGP; p 27.4 21 0.00086 13.0 3.1 16 49-64 27-42 (130)
408 1v4v_A UDP-N-acetylglucosamine 27.4 21 0.00086 13.0 10.0 75 187-274 73-161 (376)
409 1zfj_A Inosine monophosphate d 27.3 21 0.00087 13.0 3.2 100 122-251 236-347 (491)
410 1l9z_H Sigma factor SIGA; heli 27.3 21 0.00087 13.0 6.8 61 182-260 194-255 (438)
411 3hi0_A Putative exopolyphospha 27.1 16 0.00066 14.0 0.8 64 148-223 89-154 (508)
412 1w6u_A 2,4-dienoyl-COA reducta 26.7 21 0.00089 12.9 7.3 25 207-231 103-127 (302)
413 3lft_A Uncharacterized protein 26.6 21 0.00089 12.9 7.8 83 146-246 134-219 (295)
414 2at2_A Aspartate carbamoyltran 26.6 21 0.00089 12.9 8.8 13 156-168 129-141 (300)
415 3fkr_A L-2-keto-3-deoxyarabona 26.3 21 0.0009 12.8 7.2 41 154-194 120-161 (309)
416 2hw2_A Rifampin ADP-ribosyl tr 26.2 19 0.00078 13.4 1.1 32 34-70 29-60 (143)
417 1l1j_A Heat shock protease HTR 26.1 19 0.0008 13.2 1.1 12 80-91 128-139 (239)
418 1pvv_A Otcase, ornithine carba 26.1 22 0.00091 12.8 7.6 107 145-257 155-285 (315)
419 3eb2_A Putative dihydrodipicol 26.0 22 0.00091 12.8 4.5 87 154-262 113-202 (300)
420 2q07_A Uncharacterized protein 25.9 22 0.00091 12.8 4.8 26 477-504 254-279 (306)
421 2hqr_A Putative transcriptiona 25.9 22 0.00091 12.8 8.0 92 147-267 2-98 (223)
422 1xma_A Predicted transcription 25.9 22 0.00091 12.8 2.8 51 113-167 76-126 (145)
423 1n57_A Chaperone HSP31, protei 25.5 22 0.00092 12.7 3.5 67 207-276 144-218 (291)
424 1rvv_A Riboflavin synthase; tr 25.3 22 0.00093 12.7 10.2 90 145-248 12-116 (154)
425 1ojt_A Surface protein; redox- 25.3 18 0.00075 13.5 0.9 51 141-197 181-235 (482)
426 2g39_A Acetyl-COA hydrolase; c 25.1 15 0.00064 14.1 0.5 32 244-275 416-448 (497)
427 3cnb_A DNA-binding response re 25.1 22 0.00094 12.6 10.0 84 147-257 10-101 (143)
428 1x19_A CRTF-related protein; m 25.1 22 0.00094 12.6 1.9 82 144-242 190-287 (359)
429 2qv7_A Diacylglycerol kinase D 25.0 22 0.00094 12.6 7.1 20 112-131 36-55 (337)
430 2d59_A Hypothetical protein PH 25.0 22 0.00094 12.6 4.6 94 143-257 20-118 (144)
431 1hqk_A 6,7-dimethyl-8-ribityll 25.0 22 0.00094 12.6 9.8 89 146-248 13-116 (154)
432 1eep_A Inosine 5'-monophosphat 25.0 22 0.00094 12.6 4.7 82 155-252 177-268 (404)
433 1vlv_A Otcase, ornithine carba 24.9 22 0.00094 12.6 4.6 19 228-246 123-141 (325)
434 2yxg_A DHDPS, dihydrodipicolin 24.9 23 0.00095 12.6 7.5 77 154-249 109-187 (289)
435 1on3_A Methylmalonyl-COA carbo 24.9 23 0.00095 12.6 6.2 71 185-269 345-434 (523)
436 3gr4_A Pyruvate kinase isozyme 24.8 23 0.00095 12.6 6.7 94 153-270 264-362 (550)
437 1g2i_A Protease I; intracellul 24.8 23 0.00095 12.6 3.1 59 207-269 60-122 (166)
438 3m6n_A RPFF protein; enoyl-COA 24.7 23 0.00095 12.6 5.0 37 233-269 133-171 (305)
439 1mio_A Nitrogenase molybdenum 24.3 23 0.00097 12.5 7.1 159 78-261 62-251 (533)
440 3jvv_A Twitching mobility prot 24.2 23 0.00097 12.5 8.7 127 88-247 79-228 (356)
441 1vmd_A MGS, methylglyoxal synt 24.2 23 0.00097 12.5 9.4 45 188-247 88-136 (178)
442 2p67_A LAO/AO transport system 24.1 18 0.00075 13.5 0.7 114 145-269 56-181 (341)
443 3o0h_A Glutathione reductase; 24.1 23 0.00095 12.6 1.2 35 139-177 185-220 (484)
444 3abz_A Beta-glucosidase I; gly 23.9 23 0.00098 12.5 4.9 53 188-249 562-623 (845)
445 3fg9_A Protein of universal st 23.8 23 0.00099 12.5 6.2 34 208-245 119-154 (156)
446 1qyi_A ZR25, hypothetical prot 23.8 23 0.00099 12.5 7.0 117 146-271 232-370 (384)
447 3hz6_A Xylulokinase; xylulose, 23.7 24 0.00099 12.4 6.9 31 209-246 403-433 (511)
448 3dgz_A Thioredoxin reductase 2 23.7 18 0.00076 13.5 0.6 54 139-197 179-234 (488)
449 2eny_A Obscurin; beta-sandwich 23.6 20 0.00083 13.1 0.8 55 59-114 23-78 (104)
450 2kcm_A Cold shock domain famil 23.3 24 0.001 12.4 1.2 54 37-99 1-57 (74)
451 3d3u_A 4-hydroxybutyrate COA-t 23.3 18 0.00077 13.4 0.6 32 243-274 378-410 (439)
452 1c2y_A Protein (lumazine synth 23.1 24 0.001 12.4 9.4 92 144-249 12-117 (156)
453 3p32_A Probable GTPase RV1496/ 23.0 24 0.001 12.3 1.2 22 145-167 79-100 (355)
454 2x8g_A Thioredoxin glutathione 23.0 20 0.00083 13.1 0.7 10 32-41 72-81 (598)
455 2dum_A Hypothetical protein PH 22.9 24 0.001 12.3 7.5 51 185-249 104-156 (170)
456 2k5p_A THis protein, thiamine- 22.9 21 0.00088 12.9 0.8 13 210-222 58-72 (78)
457 3da1_A Glycerol-3-phosphate de 22.7 24 0.001 12.3 2.1 12 82-93 183-194 (561)
458 1i52_A 4-diphosphocytidyl-2-C- 22.7 24 0.001 12.3 1.3 72 144-238 50-123 (236)
459 6ldh_A M4 APO-lactate dehydrog 22.6 25 0.001 12.3 5.4 121 131-253 7-143 (330)
460 3gg8_A Pyruvate kinase; malari 22.5 25 0.001 12.3 5.6 52 209-269 272-327 (511)
461 3a10_A Response regulator; pho 22.4 25 0.001 12.2 8.6 80 146-250 2-83 (116)
462 3oam_A 3-deoxy-manno-octuloson 22.3 25 0.001 12.2 1.3 10 146-155 43-52 (252)
463 1ebd_A E3BD, dihydrolipoamide 22.3 25 0.001 12.2 1.3 37 139-178 164-200 (455)
464 2zzc_A Thioredoxin reductase 1 22.3 25 0.001 12.2 1.2 35 139-177 198-233 (513)
465 2r9z_A Glutathione amide reduc 22.2 25 0.001 12.2 1.3 62 127-197 154-216 (463)
466 3grf_A Ornithine carbamoyltran 22.2 25 0.001 12.2 9.3 20 8-27 9-28 (328)
467 1t6c_A Exopolyphosphatase; alp 22.1 18 0.00078 13.4 0.4 73 145-229 82-157 (315)
468 1f6k_A N-acetylneuraminate lya 22.1 25 0.0011 12.2 7.6 83 154-259 113-197 (293)
469 3g25_A Glycerol kinase; IDP007 22.0 25 0.0011 12.2 3.3 36 208-250 404-439 (501)
470 2zf5_O Glycerol kinase; hypert 22.0 25 0.0011 12.2 2.6 36 208-250 393-428 (497)
471 1ejb_A Lumazine synthase; anal 21.9 25 0.0011 12.2 8.8 98 145-248 16-125 (168)
472 2i0k_A Oxidoreductase; MIX alp 21.9 25 0.0011 12.2 3.0 24 15-39 43-66 (561)
473 3djm_A Uncharacterized protein 21.9 25 0.0011 12.2 1.6 44 48-98 66-110 (116)
474 3lad_A Dihydrolipoamide dehydr 21.9 25 0.0011 12.2 1.6 44 131-178 166-210 (476)
475 2r5f_A Transcriptional regulat 21.8 21 0.00089 12.9 0.7 23 160-182 10-33 (264)
476 2fyi_A HTH-type transcriptiona 21.8 25 0.0011 12.2 5.1 95 142-259 12-111 (228)
477 2pln_A HP1043, response regula 21.8 25 0.0011 12.1 9.8 86 142-256 15-102 (137)
478 2qcu_A Aerobic glycerol-3-phos 21.8 25 0.0011 12.1 1.6 13 81-93 161-173 (501)
479 1vl8_A Gluconate 5-dehydrogena 21.7 25 0.0011 12.1 7.4 96 112-236 32-127 (267)
480 1a3w_A Pyruvate kinase; allost 21.7 25 0.0011 12.1 4.1 52 209-269 257-312 (500)
481 3cgv_A Geranylgeranyl reductas 21.6 22 0.00091 12.8 0.7 11 98-108 144-154 (397)
482 2v9d_A YAGE; dihydrodipicolini 21.6 26 0.0011 12.1 7.0 78 154-246 140-220 (343)
483 3dlo_A Universal stress protei 21.5 26 0.0011 12.1 7.5 53 180-245 99-153 (155)
484 3ib7_A ICC protein; metallopho 21.4 26 0.0011 12.1 7.5 69 185-259 48-120 (330)
485 1agx_A Glutaminase-asparaginas 21.3 26 0.0011 12.1 3.4 34 209-245 240-274 (331)
486 1q8f_A Pyrimidine nucleoside h 21.3 26 0.0011 12.1 6.2 79 157-249 103-189 (313)
487 2rfl_A Putative phosphohistidi 21.3 26 0.0011 12.1 1.9 39 222-262 87-126 (173)
488 2e28_A Pyruvate kinase, PK; al 21.2 26 0.0011 12.1 5.5 177 52-270 90-294 (587)
489 2wpf_A Trypanothione reductase 21.1 21 0.00088 12.9 0.5 45 132-177 178-223 (495)
490 3fse_A Two-domain protein cont 21.0 26 0.0011 12.0 4.9 39 208-249 73-113 (365)
491 3mdq_A Exopolyphosphatase; str 21.0 21 0.00088 12.9 0.5 53 160-222 92-144 (315)
492 1wfy_A Regulator of G-protein 20.9 8.5 0.00036 16.4 -1.5 49 138-187 20-68 (104)
493 2d4w_A Glycerol kinase; alpha 20.9 26 0.0011 12.0 2.8 38 188-226 383-420 (504)
494 3gbv_A Putative LACI-family tr 20.8 26 0.0011 12.0 9.5 81 145-245 8-99 (304)
495 1iuk_A Hypothetical protein TT 20.8 26 0.0011 12.0 4.8 60 145-216 13-78 (140)
496 3c3k_A Alanine racemase; struc 20.7 26 0.0011 12.0 7.0 108 146-274 9-120 (285)
497 2pjk_A 178AA long hypothetical 20.7 27 0.0011 12.0 7.6 82 133-223 1-96 (178)
498 2qhk_A Methyl-accepting chemot 20.6 27 0.0011 12.0 3.0 73 400-473 5-77 (174)
499 1jx6_A LUXP protein; protein-l 20.6 27 0.0011 12.0 10.2 87 145-245 43-134 (342)
500 1ges_A Glutathione reductase; 20.5 27 0.0011 11.9 1.0 11 207-219 3-13 (450)
No 1
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=96.61 E-value=0.01 Score=42.56 Aligned_cols=53 Identities=13% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf 99874894799999735210586681459889999996675288437999997101
Q gi|254780791|r 55 FSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP 110 (529)
Q Consensus 55 f~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~ 110 (529)
|+|-|..+.+.|++|...+.+..-.+++|.-|++.|+++ .+++.+++|+.|.+
T Consensus 1068 ~tleD~tG~iev~vF~~~y~~~~~~L~~~~~l~v~G~v~---~~~~~~i~~~~i~~ 1120 (1220)
T 2hpi_A 1068 FTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVE---KGEELRVLAQAVWT 1120 (1220)
T ss_dssp EEEEETTEEEEEC-------------CTTCEEEEEEEEC--------CEEEEEEEE
T ss_pred EEEEECCCCEEEEECHHHHHHHHHHHCCCCEEEEEEEEE---ECCCEEEEEEECCC
T ss_conf 999989998899983799999988753598799999999---89944899835155
No 2
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.42 E-value=0.058 Score=35.73 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCCCCCCC-CCCHHHHHHHHHH-HHHHC--------CCCEEEEEEECCCCCCCCCCEEEEEEECCCC-EEEEEEECCCCC
Q ss_conf 88888898-6229999999999-97400--------1718999997054356888627999874894-799999735210
Q gi|254780791|r 6 QKNSLDHP-EYSVSELSYHLKH-IVESN--------LSHVCVRGEISGYRGIHSSGHAYFSLKDNHS-RIDAIIWKGTLN 74 (529)
Q Consensus 6 ~~~~~~~~-~~svs~l~~~i~~-~l~~~--------~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a-~i~~~~~~~~~~ 74 (529)
.+|+.+.. |+.++++...-.. -.+.+ ...|.+.|-|.+... ++.-+-|+|-|..+ .|.|++|.....
T Consensus 11 ~~Pt~~~~~pl~i~DI~~l~~~~g~e~~i~~~~n~PI~~V~ivG~Vvsv~~--~~~~~~y~IDDgTG~~I~~~~w~~~~~ 88 (159)
T 3kf6_A 11 QFPTLSRWNPMFISDVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDI--YEGKHVLTVDDCSGMVLRVVFIIQDDF 88 (159)
T ss_dssp -----CCCCBCCHHHHTTCBCCCC---CCEEETTEEECEEEEEEEEEEEEE--ETTEEEEEEECSSSCEEEEEEEGGGCH
T ss_pred CCCCCCCEEEEEHHHHHHHHHCCCCCCCEEEECCEEEEEEEEEEEEEEEEE--ECCEEEEEEECCCCCCEEEEEECCCCC
T ss_conf 185100044110787887664878655349999997899999999999999--456699999889999179999886774
Q ss_pred CC---CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCC
Q ss_conf 58---6681459889999996675288437999997101680
Q gi|254780791|r 75 KI---EFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGS 113 (529)
Q Consensus 75 ~~---~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~ 113 (529)
.. ......|.-|-|.|++..| +|.-|+.+..+.+...
T Consensus 89 ~~~~~~~~i~~G~~VrV~G~l~~f--~~~rqi~~~~i~~v~D 128 (159)
T 3kf6_A 89 SMSKRAISMSPGNVVCVFGKINSF--RSEVELIAQSFEELRD 128 (159)
T ss_dssp HHHHHHTTCCTTCEEEEEEEEECS--SSSCEEEEEEEEEECS
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEC--CCEEEEEEEEEEECCC
T ss_conf 445435558989599999999661--9888999999999098
No 3
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=95.71 E-value=0.088 Score=34.13 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=51.4
Q ss_pred CEEEEEECCCHH-----HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 289998478425-----899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r 146 KIIAVITSPTGA-----VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 146 ~~i~vits~~~a-----~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
+|+-|||.++.. ++.++...|.+. ++++.+| .-|.++-...+|.++++.+...+ +|+ ||+=||||
T Consensus 34 kkvlivt~~~~~~~~~~~~~~v~~~L~~~-gi~~~vf-~~v~~~p~~~~v~~~~~~~~~~~-------~D~-IiavGGGs 103 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREA-GIEVAIF-DGVEPNPKDTNVRDGLAVFRREQ-------CDI-IVTVGGGS 103 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHT-TCEEEEE-CCCCSSCBHHHHHHHHHHHHHTT-------CCE-EEEEESHH
T ss_pred CEEEEEECCCHHHHCCCHHHHHHHHHHHC-CCEEEEE-CCCCCCCCHHHHHHHHHHHHHCC-------CCE-EEECCCCC
T ss_conf 86999989767861156999999999976-9959998-37368999999999999887339-------988-99808864
Q ss_pred HHHH
Q ss_conf 4442
Q gi|254780791|r 221 IEDL 224 (529)
Q Consensus 221 ~eDL 224 (529)
.-|.
T Consensus 104 ~iD~ 107 (387)
T 3bfj_A 104 PHDC 107 (387)
T ss_dssp HHHH
T ss_pred CCCH
T ss_conf 0008
No 4
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=95.63 E-value=0.19 Score=31.18 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHHHHHC-------CCCEEEEEEECCCCCCCCCCEEEEEEECCCC-EEEEEEECCCCC--CCCCCCC
Q ss_conf 98622999999999997400-------1718999997054356888627999874894-799999735210--5866814
Q gi|254780791|r 12 HPEYSVSELSYHLKHIVESN-------LSHVCVRGEISGYRGIHSSGHAYFSLKDNHS-RIDAIIWKGTLN--KIEFLPE 81 (529)
Q Consensus 12 ~~~~svs~l~~~i~~~l~~~-------~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a-~i~~~~~~~~~~--~~~~~~~ 81 (529)
.=|.||.+|...-. -+.. +..|+|+|-|.++.. . +-.+-|+|-|..+ .|.|..|-.... ...-..+
T Consensus 46 l~PvtIkqi~~a~~--~d~~f~i~g~~v~~V~iVG~V~~v~~-~-~t~~~y~idDgTG~~i~~~~w~~~~~~~~~~~~i~ 121 (270)
T 2pi2_A 46 IVPCTISQLLSATL--VDEVFRIGNVEISQVTIVGIIRHAEK-A-PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVP 121 (270)
T ss_dssp CEECCHHHHHHCEE--ETTEEEETTEEESEEEEEEEEEEEEE-C-SSEEEEEEECSSSSCEEEEEECC-------CCCCC
T ss_pred EEEEEHHHHHHCCC--CCCCEEECCEEEEEEEEEEEEEEEEE-C-CCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 63178999861716--79976999999899999999968885-6-86789999879988279999637887643355244
Q ss_pred CCCEEEEEEEEEEECCCCEEEEEEEEEEECC-CCHH-HHHHHHHHHHHHHHH
Q ss_conf 5988999999667528843799999710168-0079-999999999765401
Q gi|254780791|r 82 EGIEFLVIGKITTFPGSSKYQIIIESLIPSG-SGTL-LTALEKRKKKLLEEG 131 (529)
Q Consensus 82 ~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l-~~~~e~lk~~L~~eG 131 (529)
+|+-|-|.|++..| +|.-++.+..|.|.. .-++ +-.+|-+...|..++
T Consensus 122 ~g~yVrV~G~lk~f--~~~~~i~a~~i~~v~D~Nei~~H~LEvi~~hl~~~k 171 (270)
T 2pi2_A 122 PETYVKVAGHLRSF--QNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSK 171 (270)
T ss_dssp TTCEEEEEEEEEEE--TTEEEEEEEEEEECSCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECCC--CCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 79889999997233--986789999989747841777889999999998603
No 5
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2
Probab=95.57 E-value=0.096 Score=33.77 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=51.5
Q ss_pred CEEEEEECCCHH----HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 289998478425----8999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITSPTGA----VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits~~~a----~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
+|+.|||++++. .+..+...|.+ ..+++.+| .-|.++-....|.++.+.+...+ +| +||+=||||.
T Consensus 44 kkvliVt~~~~~~~~g~~~~v~~~L~~-~gi~~~~f-~~v~~~pt~~~v~~~~~~~~~~~-------~D-~IIavGGGS~ 113 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKK-HGIEWVEV-SGVKPNPVLSKVHEAVEVAKKEK-------VE-AVLGVGGGSV 113 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHH-TTCEEEEE-CCCCSSCBHHHHHHHHHHHHHTT-------CS-EEEEEESHHH
T ss_pred CEEEEEECCCHHHHCCHHHHHHHHHHH-CCCEEEEE-CCCCCCCCHHHHHHHHHHHHHCC-------CC-EEEECCCCCH
T ss_conf 858999887578875299999999986-59939998-57079999999999999997459-------97-8995499634
Q ss_pred HHHHHCCHHHHHHHHH
Q ss_conf 4422007699999997
Q gi|254780791|r 222 EDLWHFNDEMIVRAIA 237 (529)
Q Consensus 222 eDL~~FN~e~laraI~ 237 (529)
-|. |++|+
T Consensus 114 iD~--------AKaia 121 (407)
T 1vlj_A 114 VDS--------AKAVA 121 (407)
T ss_dssp HHH--------HHHHH
T ss_pred HHH--------HHHHH
T ss_conf 156--------88899
No 6
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=95.32 E-value=0.12 Score=32.97 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=49.3
Q ss_pred CCEEEEEECCCHH----HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 5289998478425----899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r 145 PKIIAVITSPTGA----VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 145 p~~i~vits~~~a----~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
.+|+-|||+.++. .+..+...|.+. .+++.+|. -|.++-....|.++++.+... ++| .||+=||||
T Consensus 40 g~r~liV~~~~~~~~~g~~~~v~~~L~~~-~i~~~vf~-~v~~~p~~~~v~~~~~~~~~~-------~~D-~IvavGGGs 109 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDET-EISYEIFD-EVEENPSFDNVMKAVERYRND-------SFD-FVVGLGGGS 109 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHT-TCEEEEEE-EECSSCBHHHHHHHHHHHTTS-------CCS-EEEEEESHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHC-CCEEEEEC-CCCCCCCHHHHHHHHHHHHHC-------CCC-EEEEECCCC
T ss_conf 99589997686888735999999999876-98599968-866897999999999999854-------998-899828976
Q ss_pred HHHHHHCCHHHHHHHHH
Q ss_conf 44422007699999997
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIA 237 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~ 237 (529)
.-|+ |++|+
T Consensus 110 ~iD~--------aK~va 118 (371)
T 1o2d_A 110 PMDF--------AKAVA 118 (371)
T ss_dssp HHHH--------HHHHH
T ss_pred CCHH--------HHHHH
T ss_conf 1208--------99999
No 7
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=95.24 E-value=0.1 Score=33.44 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=52.2
Q ss_pred CCEEEEEECCCHH---HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 5289998478425---8999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 145 PKIIAVITSPTGA---VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 145 p~~i~vits~~~a---~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
.+++-|||+++-. .+..+...|.+. .+++.+|. -|.++-....|.++++.+...+ +| +||+=||||.
T Consensus 31 ~k~vlvv~~~~~~~~g~~~~i~~~L~~~-gi~~~vf~-~v~~~pt~~~v~~~~~~~~~~~-------~D-~IiavGGGs~ 100 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAA-GLAWAIYD-GVVPNPTITVVKEGLGVFQNSG-------AD-YLIAIGGGSP 100 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHT-TCEEEEEC-BCCSSCBHHHHHHHHHHHHHHT-------CS-EEEEEESHHH
T ss_pred CCEEEEEECCCHHHCCHHHHHHHHHHHC-CCEEEEEC-CCCCCCCHHHHHHHHHHHHCCC-------CC-EEEECCCCCC
T ss_conf 9879999897756582799999999875-98399987-8479979999999865550358-------88-7997688641
Q ss_pred HHHHHCCHHHHHHHHH
Q ss_conf 4422007699999997
Q gi|254780791|r 222 EDLWHFNDEMIVRAIA 237 (529)
Q Consensus 222 eDL~~FN~e~laraI~ 237 (529)
-|. |++|+
T Consensus 101 iD~--------aK~va 108 (386)
T 1rrm_A 101 QDT--------CKAIG 108 (386)
T ss_dssp HHH--------HHHHH
T ss_pred CHH--------HHHHH
T ss_conf 048--------99999
No 8
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B
Probab=95.18 E-value=0.25 Score=30.05 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHH----HHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCC-EEEEEEECCCCCCC--CCCCCCCCE
Q ss_conf 6229999999999----9740-01718999997054356888627999874894-79999973521058--668145988
Q gi|254780791|r 14 EYSVSELSYHLKH----IVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHS-RIDAIIWKGTLNKI--EFLPEEGIE 85 (529)
Q Consensus 14 ~~svs~l~~~i~~----~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a-~i~~~~~~~~~~~~--~~~~~~G~~ 85 (529)
|.|+++|...-.. .+.+ .+..|.+.|-|.++.. .. .-+=|+|-|..+ .|.|..|-.....- .-..++|+-
T Consensus 8 PvtI~ql~~a~~~~~~f~i~g~~v~~V~iVG~V~~v~~-~~-t~~~y~IdDgTG~~i~v~~w~~~~~~~~~~~~i~~g~y 85 (132)
T 3kdf_D 8 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-AP-TNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETY 85 (132)
T ss_dssp ECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEE-CS-SEEEEEEECSSSSCEEEEEEC---------CCCCTTCE
T ss_pred EEEHHHHHCCCCCCCCEEECCEEEEEEEEEEEEEEEEE-CC-CEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 06999974181689978999999999999999999998-79-78999998899994899997787756332540547999
Q ss_pred EEEEEEEEEECCCCEEEEEEEEEEECC-CCHH-HHHHHHHHHHH
Q ss_conf 999999667528843799999710168-0079-99999999976
Q gi|254780791|r 86 FLVIGKITTFPGSSKYQIIIESLIPSG-SGTL-LTALEKRKKKL 127 (529)
Q Consensus 86 v~~~g~~~~y~~~g~~ql~v~~i~~~g-~G~l-~~~~e~lk~~L 127 (529)
|-|.|++..| +|.-++.+..|.|.- .-++ +-.+|-+...|
T Consensus 86 VrV~G~lk~~--~~~~~I~~~~i~~v~D~NEi~~H~levi~~hL 127 (132)
T 3kdf_D 86 VKVAGHLRSF--QNKKSLVAFKIMPLEDMNEFTTHILEVINAHM 127 (132)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEECSSTHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEE--CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9999999530--98589999999992795799999999999987
No 9
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=94.96 E-value=0.28 Score=29.57 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=57.6
Q ss_pred CCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 71899999705---43568886--2799987------489------4799999735210586681459889999996675
Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTF 95 (529)
Q Consensus 33 ~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y 95 (529)
..|-+.|.|.. ++. ..+| .+-|+|. +.. -.|.|++|...+..+.-.++.|..|.|.|.+...
T Consensus 20 N~v~L~G~l~~dpelR~-Tp~G~~v~~f~La~~s~~~e~~~~r~~~~~i~vv~~G~~Ae~~~~~l~KG~~V~V~G~L~~r 98 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCH 98 (134)
T ss_dssp EEEEEEEEEEEEEEEEE-CTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCCEECCCCEEEEEEEEEEEEECHHHHHHHHHCCCCCEEEEEEEEEEE
T ss_conf 08999999766864679-99998399999987352605896077789999999958999999753789999999995731
Q ss_pred C---CCCEEEEEEEEEEECCC
Q ss_conf 2---88437999997101680
Q gi|254780791|r 96 P---GSSKYQIIIESLIPSGS 113 (529)
Q Consensus 96 ~---~~g~~ql~v~~i~~~g~ 113 (529)
. ..+++-|.|+.|+.-..
T Consensus 99 s~kng~~r~vl~a~~IefLds 119 (134)
T 1v1q_A 99 KAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp CTTTTSCEEEEEEEEEEETTS
T ss_pred ECCCCCCEEEEEEEEEEEECC
T ss_conf 064899889999999998037
No 10
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=94.83 E-value=0.28 Score=29.56 Aligned_cols=78 Identities=18% Similarity=0.137 Sum_probs=57.6
Q ss_pred CCCEEEEEEECCCCCC-CCCC-EEE-EEEECCCCEEEEEEECCCCCCCC--CCCCCCCEEEEEEEEEEECC-CCEEEEEE
Q ss_conf 1718999997054356-8886-279-99874894799999735210586--68145988999999667528-84379999
Q gi|254780791|r 32 LSHVCVRGEISGYRGI-HSSG-HAY-FSLKDNHSRIDAIIWKGTLNKIE--FLPEEGIEFLVIGKITTFPG-SSKYQIII 105 (529)
Q Consensus 32 ~~~~~v~gEis~~~~~-~~sG-H~Y-f~lkd~~a~i~~~~~~~~~~~~~--~~~~~G~~v~~~g~~~~y~~-~g~~ql~v 105 (529)
-.+|.|+|+|-++-.+ -++| ++| |.+.|...+|.|.+|...-.... -.++.|+-|.+.|++. |.. .+.+.+.+
T Consensus 17 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 95 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQ-NDTFVRDLVIIA 95 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEE-EETTTTEEEEEE
T ss_pred CCEEEEEEEEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEE-CCCCCCCEEEEE
T ss_conf 6669999999987768604898899999982688689999558744088984067996899999885-157777417971
Q ss_pred EEEEE
Q ss_conf 97101
Q gi|254780791|r 106 ESLIP 110 (529)
Q Consensus 106 ~~i~~ 110 (529)
..|..
T Consensus 96 ~~~~~ 100 (1041)
T 3f2b_A 96 NDLNE 100 (1041)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 01365
No 11
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} PDB: 3a5u_A*
Probab=94.57 E-value=0.19 Score=31.06 Aligned_cols=77 Identities=18% Similarity=0.393 Sum_probs=55.9
Q ss_pred CEEEEEEECC---CCCCCCCCEE--EEEEE------CC---------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 1899999705---4356888627--99987------48---------947999997352105866814598899999966
Q gi|254780791|r 34 HVCVRGEISG---YRGIHSSGHA--YFSLK------DN---------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT 93 (529)
Q Consensus 34 ~~~v~gEis~---~~~~~~sGH~--Yf~lk------d~---------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~ 93 (529)
.|-|.|-|.. ++. -.+|.. -|+|. |. .--+.|++|+..+..+.-.++.|+.|+|.|++.
T Consensus 6 ~V~liG~l~~DPelr~-t~~G~~v~~f~lA~~~~~~~~~~g~~~~~~t~~~~v~~w~~~Ae~~~~~l~KG~~V~V~GrL~ 84 (199)
T 3eiv_A 6 VITVVGNLVDDPELRF-TPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGRLK 84 (199)
T ss_dssp EEEEEEEESSCCEEEE-CTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEECCCCCEEEE-CCCCCEEEEEEEEECCCCCCCCCCCEECCCEEEEEEEHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 7999998475988988-899988999999974870306788443252056551111578999986358999999997977
Q ss_pred --EEC-----CCCEEEEEEEEEEEC
Q ss_conf --752-----884379999971016
Q gi|254780791|r 94 --TFP-----GSSKYQIIIESLIPS 111 (529)
Q Consensus 94 --~y~-----~~g~~ql~v~~i~~~ 111 (529)
-|. .++.+.++|+.|-+.
T Consensus 85 ~~~~~dkdG~~r~~~evva~~v~~~ 109 (199)
T 3eiv_A 85 QRSYEDREGVKRTVYELDVDEVGAS 109 (199)
T ss_dssp EEC--------CCEEEEEEEEEEEE
T ss_pred CCCCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 2622999998899999999781003
No 12
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=94.49 E-value=0.31 Score=29.29 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=58.8
Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 0171899999705---43568886279--998------7489-------4799999735210586681459889999996
Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKI 92 (529)
Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~ 92 (529)
.+..|.+.|-|.. ++. ..+|..+ |+| +|.. .-+.|++|...+..+.-.++.|+.|+|.|++
T Consensus 4 ~~N~V~L~G~l~~dpe~r~-~~~G~~v~~f~lA~~~~~~~~~g~~~~~~~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~l 82 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMRY-TPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp CEEEEEEEEEESSCCCCEE-CTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCEECCCEEEEEEECCHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 7619999999167987998-799988999999978976989998962568999999317689999727799999999997
Q ss_pred E--EECCCC----EEEEEEEEEEEC
Q ss_conf 6--752884----379999971016
Q gi|254780791|r 93 T--TFPGSS----KYQIIIESLIPS 111 (529)
Q Consensus 93 ~--~y~~~g----~~ql~v~~i~~~ 111 (529)
. .|...| ...++++.|++-
T Consensus 83 ~~~~~~~dG~~~~~~~i~a~~v~~l 107 (264)
T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPL 107 (264)
T ss_dssp EEC---------CCEEEEEEEEEEC
T ss_pred ECCCEEECCEEEEEEEEEEEEEECC
T ss_conf 7388762991999999999999813
No 13
>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=94.41 E-value=0.26 Score=29.89 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=51.0
Q ss_pred CCEEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 5289998478425899999-986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDIL-QRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
.+|+.|||++...++.|-+ ..+.. ..+.+|. -|+++-....|-++++.+...+ +|+ ||+=||||.-|
T Consensus 34 ~~r~livt~~~~~~~~~~v~~~l~~---~~~~v~~-~v~~~p~~~~v~~~~~~~~~~~-------~D~-IiavGGGs~iD 101 (353)
T 3hl0_A 34 LSRALVLSTPQQKGDAEALASRLGR---LAAGVFS-EAAMHTPVEVTKTAVEAYRAAG-------ADC-VVSLGGGSTTG 101 (353)
T ss_dssp CCCEEEECCGGGHHHHHHHHHHHGG---GEEEEEC-CCCTTCBHHHHHHHHHHHHHTT-------CSE-EEEEESHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCC---CCEEEEE-CCCCCCCHHHHHHHHHHHHHCC-------CCE-EEEECCCCCCC
T ss_conf 9869999783121379999998606---8808996-2516999899999999999639-------988-99958863001
Q ss_pred HHHCCHHHHHHHHHH-CCCE
Q ss_conf 220076999999974-8904
Q gi|254780791|r 224 LWHFNDEMIVRAIAN-SSIP 242 (529)
Q Consensus 224 L~~FN~e~laraI~~-~~iP 242 (529)
. |++|+. ...|
T Consensus 102 ~--------aK~ia~~~~~~ 113 (353)
T 3hl0_A 102 L--------GKAIALRTDAA 113 (353)
T ss_dssp H--------HHHHHHHHCCE
T ss_pred H--------HHHHHHCCCCC
T ss_conf 3--------34544136786
No 14
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=94.30 E-value=0.075 Score=34.72 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=47.2
Q ss_pred CEEEEEECCCHHH----HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 2899984784258----999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITSPTGAV----IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits~~~a~----~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
+|+.|||+..... +.++...|+ +.++.+|. -|.++-....+-++++.+...+ +|+ ||+=||||.
T Consensus 51 ~r~llV~~~~~~~~~g~~~~v~~~L~---g~~v~~f~-~v~~~P~~~~v~~~~~~~r~~~-------~D~-IIavGGGS~ 118 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFG-GIEPNPAYETLMNAVKLVREQK-------VTF-LLAVGGGSV 118 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT---TSEEEEEC-CCCSSCBHHHHHHHHHHHHHHT-------CCE-EEEEESHHH
T ss_pred CCEEEEECCCHHHHCCHHHHHHHHHC---CCCEEEEE-CCCCCCCHHHHHHHHHHHHHCC-------CCE-EEECCCCCH
T ss_conf 96899989527877539999999827---99179980-8237989999999999997559-------988-998089634
Q ss_pred HHHH
Q ss_conf 4422
Q gi|254780791|r 222 EDLW 225 (529)
Q Consensus 222 eDL~ 225 (529)
-|..
T Consensus 119 iD~A 122 (408)
T 1oj7_A 119 LDGT 122 (408)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 3334
No 15
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=94.15 E-value=0.41 Score=28.12 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=49.9
Q ss_pred CEEEEEEECCCCC-----CC--CCCEEE-EEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEE
Q ss_conf 1899999705435-----68--886279-998748947999997352105866814598899999966752884379999
Q gi|254780791|r 34 HVCVRGEISGYRG-----IH--SSGHAY-FSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIII 105 (529)
Q Consensus 34 ~~~v~gEis~~~~-----~~--~sGH~Y-f~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v 105 (529)
++-|.|.|..... +. +.|.++ +.+.|+.+.|++++|... ..+.++.|+-|.+.|.+..| +|+++|.+
T Consensus 13 ~v~i~g~V~~~~~~r~~~~k~g~~~~v~~~~i~D~TG~i~~~~W~~~---~~~~~~~g~~v~v~g~v~~~--~~~~el~~ 87 (97)
T 3e0e_A 13 SGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL---ADFEVKKGDIAEVSGYVKQG--YSGLEISV 87 (97)
T ss_dssp EEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG---GGCCCCTTCEEEEEEEEEEC----CEEEEE
T ss_pred EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEECHH---HHHCCCCCCEEEEEEEEEEC--CCEEEEEE
T ss_conf 38899999981475798847997308999999849980999996845---73162689799999999964--98289994
Q ss_pred EEEE
Q ss_conf 9710
Q gi|254780791|r 106 ESLI 109 (529)
Q Consensus 106 ~~i~ 109 (529)
....
T Consensus 88 ~~~~ 91 (97)
T 3e0e_A 88 DNIG 91 (97)
T ss_dssp EEEE
T ss_pred CCCE
T ss_conf 9951
No 16
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134}
Probab=94.13 E-value=0.2 Score=30.88 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=52.7
Q ss_pred CCEEEEEECCCHHHHHHHH-HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 5289998478425899999-986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDIL-QRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
.+|+-|||++...+.-|-+ ..+.. +.+.+|...+ .+-...++.++.+.+...+ +| +||+=||||.-|
T Consensus 36 ~k~~liv~~~~~~~~~~~v~~~l~~---~~~~v~~~v~-~~p~~~~v~~~~~~~~~~~-------~D-~IiavGGGs~iD 103 (358)
T 3jzd_A 36 AKRALVLCTPNQQAEAERIADLLGP---LSAGVYAGAV-MHVPIESARDATARAREAG-------AD-CAVAVGGGSTTG 103 (358)
T ss_dssp CSCEEEECCGGGHHHHHHHHHHHGG---GEEEEECCCC-TTCBHHHHHHHHHHHHHHT-------CS-EEEEEESHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCC-CCCCHHHHHHHHHHHHHCC-------CC-EEEEECCCCCCC
T ss_conf 9879999827556159999998635---8818995114-1969799999999999749-------99-899968845456
Q ss_pred HHHCCHHHHHHHHH-HCCCEEEE
Q ss_conf 22007699999997-48904885
Q gi|254780791|r 224 LWHFNDEMIVRAIA-NSSIPIIS 245 (529)
Q Consensus 224 L~~FN~e~laraI~-~~~iPVis 245 (529)
. |++|+ ...+|+|+
T Consensus 104 ~--------aK~ia~~~~~P~i~ 118 (358)
T 3jzd_A 104 L--------GKAIALETGMPIVA 118 (358)
T ss_dssp H--------HHHHHHHHCCCEEE
T ss_pred C--------CCCEEEECCCCEEC
T ss_conf 5--------41125404586412
No 17
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3}
Probab=94.09 E-value=0.29 Score=29.45 Aligned_cols=87 Identities=23% Similarity=0.238 Sum_probs=57.2
Q ss_pred CCEEEEE---ECCCHHHHHHHHHHHHHCCC-EEEEEEE-----CCCC----CCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 5289998---47842589999998630597-5899972-----1001----11103679999999974100357677758
Q gi|254780791|r 145 PKIIAVI---TSPTGAVIRDILQRISCRFP-LRVIIFP-----VKVQ----GDECPKEIANAILQLNTLKEGRTCPRPDI 211 (529)
Q Consensus 145 p~~i~vi---ts~~~a~~~D~~~~~~~r~p-~~~~~~p-----~~vQ----G~~a~~~i~~ai~~~~~~~~~~~~~~~D~ 211 (529)
..+|||| |.++---++++.+.+.+.+| +.+...- .... |+.+...+++.++.+... .+|+
T Consensus 6 ~~~igli~~~~~~d~~~~~~~~r~~~~~~p~v~v~~~~ipd~p~~I~~~~~~~~~~p~l~~~~~~le~~-------g~Da 78 (228)
T 2eq5_A 6 KYTIGLIRVITLEDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFERE-------GVDA 78 (228)
T ss_dssp CEEEEEEESSCCCCHHHHTHHHHHHHHHCTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHT-------TCSE
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-------CCCE
T ss_conf 506899970456647889999988875489966997479999876778315766379999999999877-------9989
Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99951688844422007699999997489048852057
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGH 249 (529)
|||+=-+... ..-+|+ ..++||| |++.
T Consensus 79 ivIaC~t~~~--------l~~~r~--~~~iPVi-g~~e 105 (228)
T 2eq5_A 79 IIISCAADPA--------VEKVRK--LLSIPVI-GAGS 105 (228)
T ss_dssp EEECSTTCTT--------HHHHHH--HCSSCEE-EHHH
T ss_pred EEEECCCHHH--------HHHHHH--HCCCCEE-CCHH
T ss_conf 9990687599--------999998--6599855-6318
No 18
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=94.05 E-value=0.25 Score=30.05 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCCEEEEEEECC---CCCCCCCCEEE--EEEE------C-------CCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 171899999705---43568886279--9987------4-------8947999997352105866814598899999966
Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------D-------NHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT 93 (529)
Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d-------~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~ 93 (529)
+..|.+.|-|.. ++. ..+|..| |+|- + ...-++|++|...+..+.-.++.|+.|.|.|++.
T Consensus 16 ~N~v~l~G~l~~DPe~r~-t~~g~~v~~f~vAv~~~~~~~~~~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~ 94 (153)
T 1z9f_A 16 FNKIILIGRLVRDPEERY-TLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEMR 94 (153)
T ss_dssp CCCEEEEEEESSCCEEEE-CC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHEECCCEEEEEEEEE
T ss_conf 888999999066988999-8999879999999746502577742121026999992520676565155898999999988
Q ss_pred --EEC-----CCCEEEEEEEEEEECC
Q ss_conf --752-----8843799999710168
Q gi|254780791|r 94 --TFP-----GSSKYQIIIESLIPSG 112 (529)
Q Consensus 94 --~y~-----~~g~~ql~v~~i~~~g 112 (529)
.|. ++..+.+.|++|...+
T Consensus 95 ~~~~~~kdG~~r~~~~I~a~~i~~l~ 120 (153)
T 1z9f_A 95 MRRWETPTGEKRVSPEVVANVVRFMD 120 (153)
T ss_dssp EEC-------CCCEEEEEEEEEEECC
T ss_pred ECCEECCCCCEEEEEEEEEEEEEECC
T ss_conf 46189999989999999996999876
No 19
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A
Probab=93.83 E-value=0.3 Score=29.41 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=55.8
Q ss_pred CEEEEEEECC---CCCCCCCC--EEEEEEEC-----CC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 1899999705---43568886--27999874-----89-------47999997352105866814598899999966752
Q gi|254780791|r 34 HVCVRGEISG---YRGIHSSG--HAYFSLKD-----NH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFP 96 (529)
Q Consensus 34 ~~~v~gEis~---~~~~~~sG--H~Yf~lkd-----~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~ 96 (529)
.|-+.|.|.. ++. ..+| .+=|+|.- +. ..++|++|...+..+.-.++.|+.|.|.|.+....
T Consensus 4 ~v~l~G~l~~dpelR~-Tp~G~~v~~f~la~~s~~~e~~~~r~~~~~i~~v~~g~~Ae~~~~~l~kG~~V~V~G~L~~~~ 82 (104)
T 1txy_A 4 RLVLSGTVCRAPLRKV-SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHK 82 (104)
T ss_dssp EEEEEEEEEEEEEEEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC--
T ss_pred EEEEEEEECCCCCEEE-CCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEEEEECHHHHHHHHHCCCCCEEEEEEEEEEEC
T ss_conf 9999999667871889-899976999999972058428956988789989999299999887547999999999988622
Q ss_pred ---CCCEEEEEEEEEEECCCCH
Q ss_conf ---8843799999710168007
Q gi|254780791|r 97 ---GSSKYQIIIESLIPSGSGT 115 (529)
Q Consensus 97 ---~~g~~ql~v~~i~~~g~G~ 115 (529)
..+++-|.|+.|+.-..||
T Consensus 83 ~~~g~~r~vl~~~~ie~ldsg~ 104 (104)
T 1txy_A 83 AKNGLSKMVLHAEQIELIDSGD 104 (104)
T ss_dssp ------CCEEEEEEEEEC----
T ss_pred CCCCCCEEEEEEEEEEEECCCC
T ss_conf 5389964999998999933899
No 20
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=93.54 E-value=0.14 Score=32.35 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCC--------------HHHHHHHHHHCCCEEEEEE
Q ss_conf 036799999999741003576777589995168884----4422007--------------6999999974890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFN--------------DEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN--------------~e~laraI~~~~iPVisgI 247 (529)
...++..+++.++... .+-+||| +|+|-. -||..|. ...+..++..||.|||++|
T Consensus 33 ~~~~l~~~l~~~~~d~------~vr~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvIaav 105 (261)
T 3pea_A 33 VMHDVTELIDQVEKDD------NIRVVVI-HGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAI 105 (261)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEE-EESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHCC------CEEEEEE-ECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999998688------9289999-48999735887455541000111000122212467777662478689999
Q ss_pred -CCCCCC-HHHHHHHCCCCCCCHHHHHHHCC
Q ss_conf -577752-58988641237772145676332
Q gi|254780791|r 248 -GHETDW-TLADYAADLRAPTPTGAAEMAVP 276 (529)
Q Consensus 248 -GHE~D~-Tl~D~VAD~Ra~TPTaAAElavp 276 (529)
||=.-- .-.=+.+|+|..++++ .+..|
T Consensus 106 ~G~a~GgG~~lal~~D~ria~~~a--~f~~p 134 (261)
T 3pea_A 106 HGAALGGGLEFAMSCHMRFATESA--KLGLP 134 (261)
T ss_dssp CSEEETHHHHHHHHSSEEEEETTC--EEECC
T ss_pred EEEEEHHHHHHHHCCCEEEECCCC--EEECC
T ss_conf 438862888877504559987999--89787
No 21
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=93.48 E-value=0.35 Score=28.82 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=56.5
Q ss_pred CCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 171899999705---43568886279--998------7489-------47999997352105866814598899999966
Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKIT 93 (529)
Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~ 93 (529)
+..|.+.|-|.. ++. -.+|..| |+| ++.. .-+.|++|...+..+.-.++.|+.|.|.|++.
T Consensus 2 ~N~v~l~G~l~~dpe~r~-~~~g~~v~~f~la~~~~~~~~~~~~~~~t~~~~v~~~g~~ae~~~~~l~KG~~V~V~G~l~ 80 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKY-LPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCEEEEEEESSCCEEEE-CTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCCEEEE-CCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 607999999176978999-7899899999999807623578868745058866786114433234220996999998888
Q ss_pred --EECC-----CCEEEEEEEEEEECC
Q ss_conf --7528-----843799999710168
Q gi|254780791|r 94 --TFPG-----SSKYQIIIESLIPSG 112 (529)
Q Consensus 94 --~y~~-----~g~~ql~v~~i~~~g 112 (529)
.|.. +..+.+.|++|+..+
T Consensus 81 ~~~~~~kdG~~~~~~~i~~~~i~~l~ 106 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMD 106 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECC
T ss_pred ECEEECCCCCEEEEEEEEEEEEEECC
T ss_conf 55169999989999999998999855
No 22
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=92.83 E-value=0.2 Score=30.97 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 68007999999999976540122610016310265289998478425899999986305975899972100111103679
Q gi|254780791|r 111 SGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEI 190 (529)
Q Consensus 111 ~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i 190 (529)
.|.|.+.+.+.+..+++ -.+|+-|||++...++.| .+... ++..++..-|.++-...++
T Consensus 19 fG~g~~~~~l~~~~~~~----------------G~~rvliv~g~~~~~~~~---~~~~~--l~~~~~~~~v~~~p~~~~v 77 (364)
T 3iv7_A 19 FGYGKSSAFLKQEVERR----------------GSAKVMVIAGEREMSIAH---KVASE--IEVAIWHDEVVMHVPIEVA 77 (364)
T ss_dssp EETTCHHHHHHHHHHHH----------------TCSSEEEECCGGGHHHHH---HHTTT--SCCSEEECCCCTTCBHHHH
T ss_pred ECCCHHHHHHHHHHHHC----------------CCCEEEEEECCCHHHHHH---HHHHH--HHHCEEECCCCCCCCHHHH
T ss_conf 86983987999999974----------------997599993874563999---99987--1120885664269699999
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH-CCCEEE
Q ss_conf 999999974100357677758999516888444220076999999974-890488
Q gi|254780791|r 191 ANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN-SSIPII 244 (529)
Q Consensus 191 ~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~-~~iPVi 244 (529)
.++++.+... ++|+ ||+=||||.-|. |++|+. ..+|+|
T Consensus 78 ~~~~~~~~~~-------~~D~-IiavGGGsviD~--------aK~ia~~~~~P~i 116 (364)
T 3iv7_A 78 ERARAVATDN-------EIDL-LVCVGGGSTIGL--------AKAIAMTTALPIV 116 (364)
T ss_dssp HHHHHHHHHT-------TCCE-EEEEESHHHHHH--------HHHHHHHHCCCEE
T ss_pred HHHHHHHHHC-------CCCE-EEEECCCHHHHH--------HHHHEECCCCCEE
T ss_conf 9999999865-------9998-999458167542--------1421111679878
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.67 E-value=0.66 Score=26.28 Aligned_cols=85 Identities=14% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHCCCCCCCHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 7752589886412377721456--76332346777669999988877899888999985567765304978898678887
Q gi|254780791|r 250 ETDWTLADYAADLRAPTPTGAA--EMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYR 327 (529)
Q Consensus 250 E~D~Tl~D~VAD~Ra~TPTaAA--Elavp~~~EL~~~L~~l~~RL~~a~~~~l~~~~q~L~~l~r~L~~~~~~L~~~~Qr 327 (529)
|+|+-+|- =-|+=..-||.+= .++...-.++..+|.++...|....+. .+...+.+..+...|+.....++.....
T Consensus 30 ~~~~~~~~-~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (562)
T 3ghg_A 30 DSDWPFCS-DEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKN-NKDSHSLTTNIMEILRGDFSSANNRDNT 107 (562)
T ss_dssp CCCCCBCC-SSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred CCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78899774-754567798610156789886544889999999999999988-8889999999999999999999988999
Q ss_pred HHHHHHHHH
Q ss_conf 888654568
Q gi|254780791|r 328 LDRLPRELE 336 (529)
Q Consensus 328 Ld~~~~rL~ 336 (529)
+....+.|+
T Consensus 108 ~~~~~~~l~ 116 (562)
T 3ghg_A 108 YNRVSEDLR 116 (562)
T ss_dssp HHHTTHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 24
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=92.48 E-value=0.33 Score=28.95 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-C---------------HHHHHHCCH--HHHHHHHHHCCCEEEEE
Q ss_conf 10367999999997410035767775899951688-8---------------444220076--99999997489048852
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-S---------------IEDLWHFND--EMIVRAIANSSIPIISA 246 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S---------------~eDL~~FN~--e~laraI~~~~iPVisg 246 (529)
....++..++..++... .+.+|||.=||| + .++.+.|.+ ..+.++|.+||.|||++
T Consensus 27 ~~~~~l~~~l~~~~~d~------~v~~vVl~g~g~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa 100 (250)
T 2a7k_A 27 TLETSVKDALARANADD------SVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA 100 (250)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999996399------964999982899966588763333322330568999988999999999679874886
Q ss_pred E-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 0-577752-5898864123777214
Q gi|254780791|r 247 I-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 247 I-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
| ||=.-- .-.=+.+|+|..++++
T Consensus 101 i~G~a~GgG~~lal~~D~ria~~~a 125 (250)
T 2a7k_A 101 VDGYAIGMGFQFALMFDQRLMASTA 125 (250)
T ss_dssp ECSEEETHHHHHHTTSSEEEEETTC
T ss_pred ECCEEECCCCHHHHCCCCCCCCCCC
T ss_conf 6762742644323224545234142
No 25
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=92.23 E-value=0.72 Score=25.96 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=57.1
Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEE------ECCC-------CEEEEEEECCCCCCC-CCCCCCCCEEEEEEE
Q ss_conf 0171899999705---43568886279--998------7489-------479999973521058-668145988999999
Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSL------KDNH-------SRIDAIIWKGTLNKI-EFLPEEGIEFLVIGK 91 (529)
Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~l------kd~~-------a~i~~~~~~~~~~~~-~~~~~~G~~v~~~g~ 91 (529)
.+..|-|.|-|.. ++. ..+|..| |+| ++.. --+.|++|...+..+ .-.++.|+.|.|.|+
T Consensus 4 ~mN~v~l~G~l~~dpe~~~-~~~g~~v~~f~lA~~~~~~~~~g~~~~~~~~~~v~~~g~~ae~~~~~~l~KG~~V~V~G~ 82 (301)
T 1se8_A 4 GMNHVYLIGALARDPELRY-TGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEGT 82 (301)
T ss_dssp CEEEEEEEEEESSCCEEEE-CTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEEE
T ss_pred CCEEEEEEEEECCCCEEEE-CCCCCEEEEEEEEECCCEECCCCCEEECCEEEEEEEECHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 5149999999366988998-899988999999978955879998973347999999887999999872566878999999
Q ss_pred EE--EEC-----CCCEEEEEEEEEEECC
Q ss_conf 66--752-----8843799999710168
Q gi|254780791|r 92 IT--TFP-----GSSKYQIIIESLIPSG 112 (529)
Q Consensus 92 ~~--~y~-----~~g~~ql~v~~i~~~g 112 (529)
+. .|. .++.+.+++++|+.-+
T Consensus 83 l~~~~~~dkdG~~r~~~~i~a~~v~~l~ 110 (301)
T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRMEQLG 110 (301)
T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECS
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEEECC
T ss_conf 7851239899988999999998999815
No 26
>3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium}
Probab=92.22 E-value=0.31 Score=29.29 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC----CHHHHHHC---------------CHHHHHHHHHHCCCEEEEE
Q ss_conf 0367999999997410035767775899951688----84442200---------------7699999997489048852
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGG----SIEDLWHF---------------NDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG----S~eDL~~F---------------N~e~laraI~~~~iPVisg 246 (529)
-..++..+++.+.... .+-+|||..+|+ +--|++.+ ....+.+++..||.|||++
T Consensus 55 m~~eL~~~l~~~~~d~------~v~~vVl~g~g~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaa 128 (288)
T 3h02_A 55 TVKEMIQALADARYDD------NVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAM 128 (288)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHCC------CCCEEEEECCCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999997399------9668999879997423463077664325442014565532368999997099989999
Q ss_pred E-CCCC--CCHHHHHHHCCCCCCCHH
Q ss_conf 0-5777--525898864123777214
Q gi|254780791|r 247 I-GHET--DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 247 I-GHE~--D~Tl~D~VAD~Ra~TPTa 269 (529)
| ||=. =..| =+.+|+|..++.+
T Consensus 129 v~G~a~GgG~~l-a~~cD~~ia~~~a 153 (288)
T 3h02_A 129 VAGYSIGGGHVL-HMMCDLTIAAENA 153 (288)
T ss_dssp ECSEEETHHHHH-HHHSSEEEEETTC
T ss_pred ECCEEEEHHHHH-HHHCCEEECCCCC
T ss_conf 889875063899-8735710416985
No 27
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=92.21 E-value=0.55 Score=26.98 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=50.7
Q ss_pred CEEEEEEEC---CCCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 189999970---543568886--2799987------489------47999997352105866814598899999966752
Q gi|254780791|r 34 HVCVRGEIS---GYRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFP 96 (529)
Q Consensus 34 ~~~v~gEis---~~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~ 96 (529)
.+-+.|.|. .+| +..+| .+=|+|. +.+ ..|+|++|...+..+. .++-|++|.|.|.+.- .
T Consensus 3 ~v~L~G~l~~~~~lR-yTPsG~~V~~f~Lah~s~~~e~g~~r~~~~~i~vva~G~~Ae~~~-~l~kG~~v~v~G~L~~-r 79 (115)
T 3fhw_A 3 TLELSARVLECGAMR-HTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLA-DTPLGTEMQVQGFLAP-A 79 (115)
T ss_dssp EEEEEEEEEEECCCE-ECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHT-TCCTTCEEEEEEEEEE-S
T ss_pred EEEEEEEECCCCCEE-ECCCCCEEEEEEEEECCEEECCCCCCCEEEEEEEEEEHHHHHHHH-HCCCCCEEEEEEEECC-C
T ss_conf 899999987686388-989997789999993201204887353449999999948823204-1379999999999652-6
Q ss_pred CCCE--EEEEEEEEEECC
Q ss_conf 8843--799999710168
Q gi|254780791|r 97 GSSK--YQIIIESLIPSG 112 (529)
Q Consensus 97 ~~g~--~ql~v~~i~~~g 112 (529)
..++ .-|-|++|+.-|
T Consensus 80 s~~s~~lvlHi~~iq~i~ 97 (115)
T 3fhw_A 80 RKDSVKVKLHLQQARRIA 97 (115)
T ss_dssp STTCSSEEEEEEEEEECC
T ss_pred CCCCCCEEEEEEEEEEEC
T ss_conf 688983699989999926
No 28
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=92.14 E-value=0.35 Score=28.77 Aligned_cols=76 Identities=16% Similarity=0.320 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHHHHC-------------CHHHHHHHHHHCCCEEEEEECC
Q ss_conf 3679999999974100357677758999516888-4---442200-------------7699999997489048852057
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDLWHF-------------NDEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL~~F-------------N~e~laraI~~~~iPVisgIGH 249 (529)
..++..++..++... .+-+||| +|.|- + -||-.| .-..+.++|..||.|||++|||
T Consensus 45 ~~el~~~l~~~~~d~------~v~~vvl-tg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~g 117 (257)
T 1szo_A 45 HDELAYCFHDIACDR------ENKVVIL-TGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG 117 (257)
T ss_dssp HHHHHHHHHHHHHCT------TCCEEEE-ECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred HHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 999999999997499------9549999-668876215764433234441147788999999999987089718999713
Q ss_pred CC-CCHHHHHHHCCCCCCCHH
Q ss_conf 77-525898864123777214
Q gi|254780791|r 250 ET-DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 250 E~-D~Tl~D~VAD~Ra~TPTa 269 (529)
-. ==...=+.+|.|..++.+
T Consensus 118 ~~~GG~~lal~~D~ria~~~a 138 (257)
T 1szo_A 118 PVTNAPEIPVMSDIVLAAESA 138 (257)
T ss_dssp CBCSSTHHHHTSSEEEEETTC
T ss_pred CCCEEEEEECCCCEEEECCCC
T ss_conf 555057750577648985888
No 29
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=91.81 E-value=0.26 Score=29.85 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=6.6
Q ss_pred CCCCCEEEEEEEC
Q ss_conf 2999869999911
Q gi|254780791|r 479 LATKTRILINFFD 491 (529)
Q Consensus 479 l~~gd~i~i~l~D 491 (529)
+-.|..++..+.+
T Consensus 474 vg~gkHlkl~l~~ 486 (666)
T 2zxr_A 474 LGEGRHLAFRLKG 486 (666)
T ss_dssp SSSSSEEEEEETT
T ss_pred ECCCCEEEEEEEC
T ss_conf 6278479999957
No 30
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=91.69 E-value=0.29 Score=29.47 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHC------------------------CHHHHHHHH
Q ss_conf 1036799999999741003576777589995168884----442200------------------------769999999
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHF------------------------NDEMIVRAI 236 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~F------------------------N~e~laraI 236 (529)
....+|..++..+.... .+.+||| +|+|-. -||-.| .-..+.+++
T Consensus 31 ~~~~~l~~~l~~~~~d~------~v~~vVl-tg~g~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (275)
T 1dci_A 31 AFWRELVECFQKISKDS------DCRAVVV-SGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVI 103 (275)
T ss_dssp HHHHHHHHHHHHHHTCT------TCCEEEE-EESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999997589------9679999-6789874166438887401134542100025677888899999999999
Q ss_pred HHCCCEEEEEECCC-CC-CHHHHHHHCCCCCCCHH
Q ss_conf 74890488520577-75-25898864123777214
Q gi|254780791|r 237 ANSSIPIISAIGHE-TD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 237 ~~~~iPVisgIGHE-~D-~Tl~D~VAD~Ra~TPTa 269 (529)
..||.|||++|-=- .- =.-.=+.+|.|..|+++
T Consensus 104 ~~~~kPvIaav~G~a~GGG~~lal~~D~ria~~~a 138 (275)
T 1dci_A 104 EKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138 (275)
T ss_dssp HHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTC
T ss_pred HHCCCCEEEEECCEEEHHHHHHHHCCCEEEECCCC
T ss_conf 73899899998896230648987544651104787
No 31
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=91.63 E-value=0.41 Score=28.15 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=45.7
Q ss_pred CCEEEEEECCCHH--HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 5289998478425--89999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 145 PKIIAVITSPTGA--VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 145 p~~i~vits~~~a--~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
-+|+.|||.+... +..++.+.+.+.. +.+. ...+.|+-...+|-++.+.+... ++| .||+=||||.-
T Consensus 31 g~r~lvv~d~~~~~~~~~~v~~~L~~~~-i~~~--~~~~~~~~t~~~v~~~~~~~~~~-------~~D-~IvavGGGs~~ 99 (370)
T 1jq5_A 31 GNKTVVIADEIVWKIAGHTIVNELKKGN-IAAE--EVVFSGEASRNEVERIANIARKA-------EAA-IVIGVGGGKTL 99 (370)
T ss_dssp CSEEEEEECHHHHHHTHHHHHHHHHTTT-CEEE--EEECCSSCBHHHHHHHHHHHHHT-------TCS-EEEEEESHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCC-CEEE--EEEECCCCCHHHHHHHHHHHHHC-------CCC-EEEECCCCCCC
T ss_conf 9959999897688999999999998779-9699--99959999999999999997604-------887-89973786302
Q ss_pred HHHHC
Q ss_conf 42200
Q gi|254780791|r 223 DLWHF 227 (529)
Q Consensus 223 DL~~F 227 (529)
|+.-|
T Consensus 100 D~aK~ 104 (370)
T 1jq5_A 100 DTAKA 104 (370)
T ss_dssp HHHHH
T ss_pred CHHHH
T ss_conf 01212
No 32
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=91.14 E-value=0.94 Score=24.95 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=56.7
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC---CCCCCCCCCEEEEEEEEEEECC---------CCE
Q ss_conf 7189999970543568886279998748947999997352105---8668145988999999667528---------843
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK---IEFLPEEGIEFLVIGKITTFPG---------SSK 100 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~~~~y~~---------~g~ 100 (529)
..|.|.|=|.+.|. .++|=++++|.|..+.|.||+.+..... +. .+..|.-|.|.|.|..++. .|.
T Consensus 31 ~~V~v~Gwv~~~R~-~~k~l~F~~LrD~~g~iQvv~~~~~~~~~~~~~-~l~~e~~v~v~G~v~~~~~~~~~~~~~~~~~ 108 (456)
T 3m4p_A 31 KLVTFKGWAYHIRK-ARKTLIFVELRDGSGYCQCVIFGKELCEPEKVK-LLTRECSLEITGRLNAYAGKNHPPEIADILN 108 (456)
T ss_dssp SEEEEEEEEEEEEC-CSSSEEEEEEECSSCEEEEEEESTTTTCHHHHT-TCCTTCEEEEEEEEECCCSSSCCCSCTTBCS
T ss_pred CEEEEEEEEECEEC-CCCCEEEEEEECCCCCEEEEEECCCCCCHHHHH-CCCCCCEEEEEEEEEEECCCCCCCCCCCCEE
T ss_conf 99999983516677-999819999980897689999488778899996-0888409999999983448777886655347
Q ss_pred EEEEEEEEEECC
Q ss_conf 799999710168
Q gi|254780791|r 101 YQIIIESLIPSG 112 (529)
Q Consensus 101 ~ql~v~~i~~~g 112 (529)
+.+.++.++.-+
T Consensus 109 ~ei~~~~~~vl~ 120 (456)
T 3m4p_A 109 LEMQVTEWKVIG 120 (456)
T ss_dssp SEEEEEEEEEEE
T ss_pred EEEEEEEEEECC
T ss_conf 999999999726
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.98 E-value=0.22 Score=30.62 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=47.2
Q ss_pred CEEEEEEECCCCCCC-CCCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf 189999970543568-8862-79998748947999997352105866814598899999966752884379999971
Q gi|254780791|r 34 HVCVRGEISGYRGIH-SSGH-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESL 108 (529)
Q Consensus 34 ~~~v~gEis~~~~~~-~sGH-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i 108 (529)
.+.+.|+|.+..... ++.. +.+.+.|+.+.|.|++|...+..-.++-..|..|++.|++....-+|.+|+.--++
T Consensus 167 ~~ti~g~I~~~~~~~~~~~~~~~~~~~D~tg~i~l~fFn~~~~~~~lk~~~G~~v~v~Gkvk~~~~~~~~qi~~pe~ 243 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIHNAEV 243 (780)
T ss_dssp CCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEEEEECSCCTTSSCCEEEEEE
T ss_pred EEEEEEEEEEEECCCCCCCEEEEEEEEECCEEEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCCEE
T ss_conf 69999999985456689973699999989889999995968999866345899899999999758576699439743
No 34
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=90.96 E-value=0.97 Score=24.82 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=70.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CC--CCEEEEEEECCCCCCCCCCE-EEEEEECCCCEEEEEEECCCCCC-
Q ss_conf 998888888889862299999999999740-01--71899999705435688862-79998748947999997352105-
Q gi|254780791|r 1 MNPFSQKNSLDHPEYSVSELSYHLKHIVES-NL--SHVCVRGEISGYRGIHSSGH-AYFSLKDNHSRIDAIIWKGTLNK- 75 (529)
Q Consensus 1 ~~~~~~~~~~~~~~~svs~l~~~i~~~l~~-~~--~~~~v~gEis~~~~~~~sGH-~Yf~lkd~~a~i~~~~~~~~~~~- 75 (529)
++|+|.+. .+-.|+.++...-+.+-++ .+ ..|+|.|=|.+.|. .+|. ++++|.|....|.||+=+.....
T Consensus 24 ~~pyp~~~---~~t~s~~~~~~~~~~l~~~~~~~~~~V~v~Gwv~~~R~--~ggkl~Fi~LrD~sg~iQvv~~~~~~~~~ 98 (521)
T 3bju_A 24 EDPYPHKF---HVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRA--SGGKLIFYDLRGEGVKLQVMANSRNYKSE 98 (521)
T ss_dssp CCSSCSCC---CCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEE--SSSSEEEEEEEETTEEEEEEEEGGGSSCH
T ss_pred CCCCCCCC---CCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEC--CCCCEEEEEEECCCEEEEEEEECCCCCCH
T ss_conf 99999878---48770999999850478765358988999899780777--99938999997798899999958867788
Q ss_pred -----CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf -----86681459889999996675288437999997101
Q gi|254780791|r 76 -----IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP 110 (529)
Q Consensus 76 -----~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~ 110 (529)
+.-.+.-|+-|.+.|.+. -.+.|.+.+.+.++..
T Consensus 99 ~~~~~~~~~l~~~~~v~v~g~~~-~~~~~elev~~~~i~v 137 (521)
T 3bju_A 99 EEFIHINNKLRRGDIIGVQGNPG-KTKKGELSIIPYEITL 137 (521)
T ss_dssp HHHHHHHHHCCTTCEEEEEEEEE-ECTTCCEEEEEEEEEE
T ss_pred HHHHHHHCEEEEEEEEEEEEEEC-CCCCCEEEEEEEEEEE
T ss_conf 99999738277766999985773-6787312111223466
No 35
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=90.91 E-value=0.98 Score=24.78 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=47.8
Q ss_pred CCCCEEEEEEECC---CCCCCCCCEE--EEEEE------CC--------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 0171899999705---4356888627--99987------48--------9479999973521058668145988999999
Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHA--YFSLK------DN--------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529)
Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~--Yf~lk------d~--------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529)
++..|-+.|-|.. ++ +-.+|.. -|+|. |. .--++|++|...+..+.-.++.|+.|.|.|+
T Consensus 4 ~mN~v~L~G~l~~dpe~r-~t~~g~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 4 GVNKVILVGNLGQDPEVR-YMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CEEEEEEEEEESSCCEEE-CCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEE-ECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCEEEEEEE
T ss_conf 504999999888798898-8899988999998613221025788440330489899987077877665005888999858
Q ss_pred EE--EECC-CC
Q ss_conf 66--7528-84
Q gi|254780791|r 92 IT--TFPG-SS 99 (529)
Q Consensus 92 ~~--~y~~-~g 99 (529)
+. .|.. .|
T Consensus 83 l~~~~~~~k~G 93 (145)
T 1qvc_A 83 LRTRKWTDQSG 93 (145)
T ss_dssp EEEEEECSSSS
T ss_pred EEECCCCCCCC
T ss_conf 85132498999
No 36
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.14.1.3
Probab=90.76 E-value=0.32 Score=29.09 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHC-------------C--HHHHHHHHHHCCCEEEEE
Q ss_conf 1036799999999741003576777589995168884---442200-------------7--699999997489048852
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHF-------------N--DEMIVRAIANSSIPIISA 246 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~F-------------N--~e~laraI~~~~iPVisg 246 (529)
....++..++..++... .+-+|||.=.|+++ -||-.| . -..+..+|..||.|||.+
T Consensus 37 ~~~~el~~~l~~~~~d~------~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 110 (264)
T 1wz8_A 37 ALHRGLARVWRDLEAVE------GVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA 110 (264)
T ss_dssp HHHHHHHHHHHHHTTCT------TCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999986689------986999978999843899752025543347788888999999999999789989999
Q ss_pred E-CCCCC--CHHHHHHHCCCCCCCHH
Q ss_conf 0-57775--25898864123777214
Q gi|254780791|r 247 I-GHETD--WTLADYAADLRAPTPTG 269 (529)
Q Consensus 247 I-GHE~D--~Tl~D~VAD~Ra~TPTa 269 (529)
| ||=.= ..|+ +.+|+|..++++
T Consensus 111 v~G~a~GgG~~la-l~~D~~ia~~~a 135 (264)
T 1wz8_A 111 VEKVAVGAGLALA-LAADIAVVGKGT 135 (264)
T ss_dssp ECSEEETHHHHHH-HHSSEEEEETTC
T ss_pred ECCCCCHHHHHHH-HHHCCCCHHHHH
T ss_conf 7484052888999-864403011555
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=90.64 E-value=1 Score=24.60 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHH
Q ss_conf 75899951688844422007699999997489048852057775258988641237772145
Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGA 270 (529)
Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaA 270 (529)
.|.==++..||++-.=-. |-+. ..-.++.|+-+|.- .|..-..|+.+
T Consensus 6 ~~~~~~~~~~~~~~g~r~-----~~~~---------~~~~~~~~~~~~~~-~~~~~k~~~~~ 52 (390)
T 1deq_A 6 PPSGDFLTEGGGVRGPRL-----VERQ---------QSACKETGWPFCSD-EDWNTKCPSGC 52 (390)
T ss_pred CCCCCEECCCCCCCCCCC-----CCCC---------CCCCCCCCCCCCCH-HHHCCCCCCHH
T ss_conf 887750067887558730-----0011---------22135789887672-43065574277
No 38
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=90.58 E-value=0.34 Score=28.89 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------CCCHHHHHHC-------------CHHHHHHHHHHCCCEEEE
Q ss_conf 03679999999974100357677758999516-------8884442200-------------769999999748904885
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARG-------GGSIEDLWHF-------------NDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG-------GGS~eDL~~F-------------N~e~laraI~~~~iPVis 245 (529)
-..++..+++.++... .+.+||| +| ||-..++..+ ....+.++|..||.|||+
T Consensus 27 ~~~el~~~l~~~~~d~------~v~~vvi-~g~g~~f~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa 99 (253)
T 1uiy_A 27 MALSLLQALDDLEADP------GVRAVVL-TGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVA 99 (253)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEE-EESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999997399------9659999-78886644564067664123455301223212366899999968998899
Q ss_pred EE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf 20-57775-25898864123777214
Q gi|254780791|r 246 AI-GHETD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 246 gI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529)
+| ||=.- =.-+=+.+|.|..++++
T Consensus 100 ai~G~a~GgG~~lal~cD~ria~~~a 125 (253)
T 1uiy_A 100 AVNGPAVAGGAGLALACDLVVMDEEA 125 (253)
T ss_dssp EECSCEETHHHHHHHTSSEEEEETTC
T ss_pred EECCEEEHHHHHHHHHCCEEEECCCC
T ss_conf 99385762889999734788954555
No 39
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium 104}
Probab=90.50 E-value=0.45 Score=27.80 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHC------------------CHHHHHHHHHHCCCE
Q ss_conf 1036799999999741003576777589995168884----442200------------------769999999748904
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHF------------------NDEMIVRAIANSSIP 242 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~F------------------N~e~laraI~~~~iP 242 (529)
....+|..+|+.++... .+.+||| +|.|.. -||-.| +...+.+++..||.|
T Consensus 38 ~~~~~l~~~l~~~~~d~------~v~vvvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP 110 (267)
T 3oc7_A 38 ALVSQLHQGLRDASSDP------AVRVVVL-AHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLP 110 (267)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEE-EECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999996599------9559999-7889977489877987532443024677899999999999999977998
Q ss_pred EEEEE-CCC--CCCHHHHHHHCCCCCCCHH
Q ss_conf 88520-577--7525898864123777214
Q gi|254780791|r 243 IISAI-GHE--TDWTLADYAADLRAPTPTG 269 (529)
Q Consensus 243 VisgI-GHE--~D~Tl~D~VAD~Ra~TPTa 269 (529)
||.+| ||= --..|+ +.+|.|..|+.+
T Consensus 111 vIa~v~G~a~GgG~~la-~~~D~ria~~~a 139 (267)
T 3oc7_A 111 VIAAIDGHVRAGGFGLV-GACDIAVAGPRS 139 (267)
T ss_dssp EEEEECSEEETTHHHHH-HHSSEEEECTTC
T ss_pred EEEEEECEECCCCHHHH-HHCCCCEECCCC
T ss_conf 89998276611533776-512301117754
No 40
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=90.47 E-value=1.1 Score=24.48 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=50.9
Q ss_pred CCEEEEEEECC---CCCCCCCC--EEEEEEE------CCC------CEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE-
Q ss_conf 71899999705---43568886--2799987------489------479999973521058668145988999999667-
Q gi|254780791|r 33 SHVCVRGEISG---YRGIHSSG--HAYFSLK------DNH------SRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT- 94 (529)
Q Consensus 33 ~~~~v~gEis~---~~~~~~sG--H~Yf~lk------d~~------a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~- 94 (529)
..+-+.|.|.. +|. -.+| .+=|+|. +.+ ..|.|++|...+..+. .++.|..|.+.|.++.
T Consensus 3 N~v~L~G~l~~~pelRy-TpsG~~v~~f~la~~~~~~e~g~~r~~~~~i~vv~~G~~Ae~~~-~l~kG~~v~v~G~L~~r 80 (101)
T 3en2_A 3 NRLQLVATLVEREVMRY-TPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLD-RIAPGTVLECVGFLARK 80 (101)
T ss_dssp CCEEEEEEEEEECCCEE-CTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHT-TSCTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEE-CCCCCEEEEEEEEECCEEECCCCCEEEEEEEEEEEEHHHHHHHH-HCCCCCEEEEEEEEEEC
T ss_conf 19999999877874689-99997899999998523805997105779999999908957666-45899999999999726
Q ss_pred -ECCCCEEEEEEEEEEEC
Q ss_conf -52884379999971016
Q gi|254780791|r 95 -FPGSSKYQIIIESLIPS 111 (529)
Q Consensus 95 -y~~~g~~ql~v~~i~~~ 111 (529)
|.. .++=|-|+.||.-
T Consensus 81 s~~~-~~lVlHi~~ie~~ 97 (101)
T 3en2_A 81 HRSS-KALVFHISGLEHH 97 (101)
T ss_dssp C-----CEEEEEEEEEEC
T ss_pred CCCC-CEEEEEEEEEEEC
T ss_conf 7538-9079999998742
No 41
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=90.42 E-value=1.1 Score=24.45 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=51.5
Q ss_pred CCCEEEEEEECCCC------CCCCCCEE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEE
Q ss_conf 17189999970543------56888627-999874894799999735210586681459889999-99667528843799
Q gi|254780791|r 32 LSHVCVRGEISGYR------GIHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQI 103 (529)
Q Consensus 32 ~~~~~v~gEis~~~------~~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql 103 (529)
..++-|.|-|.+.. ....+|-+ .+.+.|+.+.|++++|...+. .++.|+-|.+. |++..| +|.++|
T Consensus 12 ~~~v~i~~~V~~~~~~r~~~~k~g~~~v~~~~i~D~TG~i~~tlW~~~~~----~i~~Gd~v~i~~~~v~~~--~g~~~l 85 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTAF--KGQVQL 85 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE--TTEEEE
T ss_pred CCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCCCEEEEEEECCCCC----CCCCCCEEEEEEEEEEEE--CCEEEE
T ss_conf 98789999999887871687389988999999986998799988057534----489999999945599997--997999
Q ss_pred EEE---EEEECCCC
Q ss_conf 999---71016800
Q gi|254780791|r 104 IIE---SLIPSGSG 114 (529)
Q Consensus 104 ~v~---~i~~~g~G 114 (529)
.+. .|.+.+.+
T Consensus 86 ~~~~~~~i~~~~d~ 99 (119)
T 1o7i_A 86 NAGSKTKIAEASED 99 (119)
T ss_dssp EECTTCEEEECCCT
T ss_pred EECCCEEEEECCCC
T ss_conf 98998699998866
No 42
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=90.19 E-value=0.7 Score=26.05 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHC------------CHHHHHHHHHHCCCEEEEEE-CC
Q ss_conf 036799999999741003576777589995168884---442200------------76999999974890488520-57
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHF------------NDEMIVRAIANSSIPIISAI-GH 249 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~F------------N~e~laraI~~~~iPVisgI-GH 249 (529)
-..++..+|+.++... .+.+|||.-+|++. -||..| .-..+..++..||.|||++| ||
T Consensus 28 ~~~~l~~al~~~~~d~------~v~~vvl~~~g~~f~~g~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa~v~G~ 101 (254)
T 3gow_A 28 LLDALYAALKEGEEDR------EVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGV 101 (254)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred HHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
T ss_conf 9999999999997688------9389999678987565630565214523578999999999999971999899998784
Q ss_pred CCC-CHHHHHHHCCCCCCCHH
Q ss_conf 775-25898864123777214
Q gi|254780791|r 250 ETD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 250 E~D-~Tl~D~VAD~Ra~TPTa 269 (529)
=.- =+-.=+.+|.|..++++
T Consensus 102 a~GgG~~la~~cD~ria~~~a 122 (254)
T 3gow_A 102 AAGAGMSLALWGDLRLAAVGA 122 (254)
T ss_dssp EETHHHHHHTTCSEEEEETTC
T ss_pred EEHHHHHHHHCCCEEEECCCC
T ss_conf 212548877525515873887
No 43
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=90.09 E-value=0.15 Score=31.98 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCCH------------------HHHHHHHHHCCCEE
Q ss_conf 036799999999741003576777589995168884----44220076------------------99999997489048
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFND------------------EMIVRAIANSSIPI 243 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN~------------------e~laraI~~~~iPV 243 (529)
...++..++..++... .+.|||| +|+|-. -||-.|.. ..+..+|..||.||
T Consensus 37 ~~~~l~~al~~~~~d~------~v~vvvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 109 (276)
T 2j5i_A 37 LNREMIDVLETLEQDP------AAGVLVL-TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPT 109 (276)
T ss_dssp HHHHHHHHHHHHHTCT------TEEEEEE-EESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999997399------9179999-78988641788789986410022103566666777888999999789989
Q ss_pred EEEE-CCCC--CCHHHHHHHCCCCCCCHH
Q ss_conf 8520-5777--525898864123777214
Q gi|254780791|r 244 ISAI-GHET--DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 244 isgI-GHE~--D~Tl~D~VAD~Ra~TPTa 269 (529)
|++| ||=. =..|+ +.+|.|..|+++
T Consensus 110 Iaav~G~a~GgG~~la-l~cD~ria~~~a 137 (276)
T 2j5i_A 110 IAMVNGWCFGGGFSPL-VACDLAICADEA 137 (276)
T ss_dssp EEEECSCEEGGGHHHH-HHSSEEEEETTC
T ss_pred EEECCCCEEHHHHHHH-HCCCHHEECCCC
T ss_conf 9946994500434877-534410067888
No 44
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426}
Probab=89.84 E-value=0.83 Score=25.43 Aligned_cols=71 Identities=24% Similarity=0.202 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-C---HHHHHHCC-------------HHHHHHHHHHCCCEEEEEE-C
Q ss_conf 367999999997410035767775899951688-8---44422007-------------6999999974890488520-5
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGG-S---IEDLWHFN-------------DEMIVRAIANSSIPIISAI-G 248 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S---~eDL~~FN-------------~e~laraI~~~~iPVisgI-G 248 (529)
..+|..++..++... .+.+|||.-||| . =-||-.|. -..+.++|..||.|||.+| |
T Consensus 37 ~~~l~~~l~~~~~d~------~vr~vil~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G 110 (265)
T 2ppy_A 37 YKEFNAAIDDIRFDP------DIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEG 110 (265)
T ss_dssp HHHHHHHHHHHHTCT------TCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEEEEEECS
T ss_pred HHHHHHHHHHHHHCC------CCEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999998499------96599996178960567852102101005678899998889999986089878999817
Q ss_pred CCCCCHH-HHHHHCCC
Q ss_conf 7775258-98864123
Q gi|254780791|r 249 HETDWTL-ADYAADLR 263 (529)
Q Consensus 249 HE~D~Tl-~D~VAD~R 263 (529)
|-.---+ .-+.+|.|
T Consensus 111 ~a~GgG~~lal~~D~r 126 (265)
T 2ppy_A 111 HTVGGGLEMALACDLR 126 (265)
T ss_dssp EEETHHHHHHHTSSEE
T ss_pred EECCCCCEEECCCCEE
T ss_conf 2336863441024268
No 45
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=89.82 E-value=0.9 Score=25.08 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------CCCHHHHHHC---------------------CHHHHHHH
Q ss_conf 1103679999999974100357677758999516-------8884442200---------------------76999999
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARG-------GGSIEDLWHF---------------------NDEMIVRA 235 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG-------GGS~eDL~~F---------------------N~e~lara 235 (529)
.....++..+++.++... .+-+||| +| |+-+.++..+ .-..++.+
T Consensus 35 ~~~~~~l~~al~~~~~d~------~v~~vvl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (280)
T 1pjh_A 35 GEDYIYLGELLELADRNR------DVYFTII-QSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDA 107 (280)
T ss_dssp HHHHHHHHHHHHHHHHCT------TCCEEEE-ECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999997499------9769999-669987438872688872234542111013478999999999999999
Q ss_pred HHHCCCEEEEEE-CCCCC-CHHHHHHHCCCCCCCH
Q ss_conf 974890488520-57775-2589886412377721
Q gi|254780791|r 236 IANSSIPIISAI-GHETD-WTLADYAADLRAPTPT 268 (529)
Q Consensus 236 I~~~~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPT 268 (529)
|..||.|||.+| ||=.- =.-.=+.+|.|..|+-
T Consensus 108 i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~d 142 (280)
T 1pjh_A 108 FIKHSKVLICCLNGPAIGLSAALVALCDIVYSIND 142 (280)
T ss_dssp HHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESST
T ss_pred HHHCCCCEEEEECCEECCCCCCCCCCCCHHHHHHH
T ss_conf 99689998999778101466423322105776444
No 46
>2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A*
Probab=89.72 E-value=0.89 Score=25.13 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH------------------HHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 036799999999741003576777589995168884------------------44220076999999974890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI------------------EDLWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~------------------eDL~~FN~e~laraI~~~~iPVisgI 247 (529)
...+|..+|..+.... .+-+|||.-.|++. .+.+...-..+.+++..|+.|||++|
T Consensus 40 m~~~l~~al~~~~~d~------~v~~vvl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav 113 (272)
T 2iex_A 40 TVNEMIDAFTKARDDS------NIGVIILTGAGGKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMV 113 (272)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEEEESSSSEEECCBC---------------CCCTHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999986199------9559998437865400377187760356420245677777789999983999899998
Q ss_pred -CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf -577752-5898864123777214
Q gi|254780791|r 248 -GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
||=.-- .-+=+.+|.|..++.+
T Consensus 114 ~G~a~GgG~~lal~~D~ria~~~a 137 (272)
T 2iex_A 114 AGYAIGGGHVLHVVCDLTIAADNA 137 (272)
T ss_dssp CSEEETHHHHHHHHSSEEEEETTC
T ss_pred CCEEEHHHHHHHHCCCCCEECCCC
T ss_conf 898437899998603644566887
No 47
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=89.52 E-value=1.2 Score=23.90 Aligned_cols=77 Identities=9% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCCCEEEEEEECC---CCCCCCCCE---EEEEEE-------CCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEE--E
Q ss_conf 0171899999705---435688862---799987-------489479999973521058668145988999999667--5
Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGH---AYFSLK-------DNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITT--F 95 (529)
Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH---~Yf~lk-------d~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~--y 95 (529)
.+..|-+.|-|.. ++.. .+|. +.|.+. |...-++|++|...+..+.-.++.|+.|.|.|++.. |
T Consensus 10 ~MN~v~l~G~l~~dPElr~T-~~g~~~v~~~~v~~~~~~~~~~~~~i~v~~wg~~Ae~~~~~l~kG~~V~V~G~l~~~~~ 88 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYA-QDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSL 88 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEEC-TTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC-
T ss_pred HCCEEEEEEEECCCCEEEEE-CCCCEEEEEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEEEEEECEEE
T ss_conf 27999999998789679996-79988999999996798457897799999988999999986089999999999877288
Q ss_pred C-----CCCEEEEEEEEE
Q ss_conf 2-----884379999971
Q gi|254780791|r 96 P-----GSSKYQIIIESL 108 (529)
Q Consensus 96 ~-----~~g~~ql~v~~i 108 (529)
+ .+..+.++|++|
T Consensus 89 ~~kdG~k~~~~ei~a~~i 106 (108)
T 3koj_A 89 LKPDGNREKQTELTVTRV 106 (108)
T ss_dssp -------CCEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEEEC
T ss_conf 999998999999999870
No 48
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=89.52 E-value=1.2 Score=23.90 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=53.5
Q ss_pred CCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC---------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 171899999705---43568886279--9987------48---------9479999973521058668145988999999
Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN---------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529)
Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~---------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529)
+..|-|.|-|.. ++. ..+|-.| |+|- |. .--+.|++|...+..+.-.++.|+.|+|.|+
T Consensus 4 ~N~V~l~G~l~~dpe~r~-t~~G~~v~~f~la~~~~~~~~~~g~~~~~~t~~~~v~~~g~~Ae~~~~~~~KG~~V~V~G~ 82 (168)
T 3afp_A 4 DTTITIVGNLTADPELRF-TSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCEEEEEEEESSSCCCEE-CTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred CCEEEEEEECCCCCEEEE-CCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 688999998476988998-7999789999999724433146785024650757999876999999997179998999998
Q ss_pred EE--EECC-----CCEEEEEEEEEEE
Q ss_conf 66--7528-----8437999997101
Q gi|254780791|r 92 IT--TFPG-----SSKYQIIIESLIP 110 (529)
Q Consensus 92 ~~--~y~~-----~g~~ql~v~~i~~ 110 (529)
+. -|.. ++...+.++.|.+
T Consensus 83 l~~~~~~~~~g~~~~~~~i~a~~v~~ 108 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGP 108 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEE
T ss_pred EECCCCCCCCCCEEEEEEEEEEEECC
T ss_conf 65365198999889999999987414
No 49
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367}
Probab=89.46 E-value=1.2 Score=23.86 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=37.4
Q ss_pred CCEEEEEECCCH--HHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 528999847842--589999998630597-58999721001111036799999999741003576777589995168884
Q gi|254780791|r 145 PKIIAVITSPTG--AVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 145 p~~i~vits~~~--a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
.++|++|++... -..++-.+-..+-.+ ..+.. .+.|.....+.-+++..+-..+ +.+|+|+.
T Consensus 123 ~~~I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~-----~~~~ai~~------- 187 (276)
T 3jy6_A 123 YQHVVVLTSELELSRTRQERYRGILAAAQDVDVLE---VSESSYNHSEVHQRLTQLITQN-----DQKTVAFA------- 187 (276)
T ss_dssp CCEEEEEEECSTTCHHHHHHHHHHHTTCSEEEEEE---ECSSSCCHHHHHHHHHHHHHSS-----SSCEEEEE-------
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHHHC-----CCCCEEEC-------
T ss_conf 66213870573110138789999999987559753---2135676788999999987640-----14330100-------
Q ss_pred HHHHHCCHHH---HHHHHHHCC--CE-EEEEECCC
Q ss_conf 4422007699---999997489--04-88520577
Q gi|254780791|r 222 EDLWHFNDEM---IVRAIANSS--IP-IISAIGHE 250 (529)
Q Consensus 222 eDL~~FN~e~---laraI~~~~--iP-VisgIGHE 250 (529)
+||+. +.+++.++. +| =|+=||+.
T Consensus 188 -----~~d~~a~g~~~al~~~g~~vp~di~vi~~d 217 (276)
T 3jy6_A 188 -----LKERWLLEFFPNLIISGLIDNQTVTATGFA 217 (276)
T ss_dssp -----SSHHHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred -----CCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf -----667999999999998699999947999988
No 50
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=89.33 E-value=1.3 Score=23.79 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 677766999998887
Q gi|254780791|r 279 EHLQSSLINLEARLN 293 (529)
Q Consensus 279 ~EL~~~L~~l~~RL~ 293 (529)
-+|...|......+.
T Consensus 85 CeLqd~L~kQe~~lk 99 (464)
T 1m1j_B 85 CELQTTLLKQEKTVK 99 (464)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 689999999999999
No 51
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=89.28 E-value=1.3 Score=23.76 Aligned_cols=74 Identities=19% Similarity=0.092 Sum_probs=49.8
Q ss_pred CEEEEEEEC---CCCCCCCCC--EEEEEEE------CC------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC
Q ss_conf 189999970---543568886--2799987------48------947999997352105866814598899999966752
Q gi|254780791|r 34 HVCVRGEIS---GYRGIHSSG--HAYFSLK------DN------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFP 96 (529)
Q Consensus 34 ~~~v~gEis---~~~~~~~sG--H~Yf~lk------d~------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~ 96 (529)
.|-+.|.|+ .+|. -.+| .+-|+|. +. ...|.|++|...+..+. ++-|+.|.+.|.+. +.
T Consensus 9 ~v~L~G~l~~~pelRy-Tp~G~~v~~f~La~~~~~~~~~~~r~~~~~i~~va~G~~Ae~~~--l~kG~~v~v~G~L~-~r 84 (103)
T 3k8a_A 9 LVSLAALIEKAFPIRY-TPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQ--YRQGDCATVEGFLA-QK 84 (103)
T ss_dssp EEEEEEEEEEECCCEE-CTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHST--TCTTCEEEEEEEEE-ES
T ss_pred EEEEEEEECCCCCEEE-CCCCCEEEEEEEEEEEEHHCCCCCCEEEEEEEEEEECHHHHHHH--HCCCCEEEEEEEEE-EC
T ss_conf 7999999877863889-99998899999997101101887200217999999737634232--37999999999977-25
Q ss_pred CC--CEEEEEEEEEEEC
Q ss_conf 88--4379999971016
Q gi|254780791|r 97 GS--SKYQIIIESLIPS 111 (529)
Q Consensus 97 ~~--g~~ql~v~~i~~~ 111 (529)
.+ -+.-|.|++|+.-
T Consensus 85 s~~s~qlv~hi~~ie~~ 101 (103)
T 3k8a_A 85 SRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp SSSCCCEEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEEEC
T ss_conf 67688059999999985
No 52
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=89.21 E-value=1.3 Score=23.72 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=50.2
Q ss_pred CCCCEEEEEEECCCCCCCCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEEE
Q ss_conf 017189999970543568886-27999874894799999735210586681459889999-996675288437999997
Q gi|254780791|r 31 NLSHVCVRGEISGYRGIHSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIES 107 (529)
Q Consensus 31 ~~~~~~v~gEis~~~~~~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~~ 107 (529)
+..+|-|.|.|.......+.+ .....|.|+.++|++++|.... .-.++.|+-|.+. +++..| +|.++|.+..
T Consensus 14 ~~~~V~i~~kV~~i~e~~~~~~~~~g~l~DeTG~Ir~t~W~~~~---~~~l~~Gd~v~i~n~~v~~~--~g~~~l~i~~ 87 (109)
T 2kbn_A 14 NGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---LPLLEQGESYLLRSVVVGEY--NDRFQVQVNK 87 (109)
T ss_dssp TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---CCCCCTTCEEEEEEEEEEEE--TTEEEEEECS
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCC---CCCCCCCCEEEEEEEEEEEE--CCEEEEEECC
T ss_conf 99838999999996089996199999998888869999967746---76568998999951899776--8818999899
No 53
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=89.21 E-value=1.1 Score=24.47 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=55.9
Q ss_pred HHHHCCCCEEEEEEECC---CCCCCCCCEE--EEEEE------CCC-------------CEEEEEEECCCCCC-CCCCCC
Q ss_conf 97400171899999705---4356888627--99987------489-------------47999997352105-866814
Q gi|254780791|r 27 IVESNLSHVCVRGEISG---YRGIHSSGHA--YFSLK------DNH-------------SRIDAIIWKGTLNK-IEFLPE 81 (529)
Q Consensus 27 ~l~~~~~~~~v~gEis~---~~~~~~sGH~--Yf~lk------d~~-------------a~i~~~~~~~~~~~-~~~~~~ 81 (529)
+++..+..|-+.|-|.. ++. ..+|.. -|+|- |.+ .-++|++|...+.. +.-.++
T Consensus 9 ~~~~~mN~V~LiG~l~~dPelr~-t~~G~~v~~f~lAv~~~~k~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~ 87 (132)
T 3ull_A 9 VLERSLNRVHLLGRVGQDPVLRQ-VEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVK 87 (132)
T ss_dssp -CCCCEEEEEEEEEECSCCEEEC-CTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCC
T ss_pred EECCCCEEEEEEEECCCCCEEEE-CCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCEECCEEECHHHHHHHHHHCC
T ss_conf 40078409999998787988998-68998899999986043026767542045145401000200012024667876337
Q ss_pred CCCEEEEEEEEEE--EC-C----CCEEEEEEEEEEECC
Q ss_conf 5988999999667--52-8----843799999710168
Q gi|254780791|r 82 EGIEFLVIGKITT--FP-G----SSKYQIIIESLIPSG 112 (529)
Q Consensus 82 ~G~~v~~~g~~~~--y~-~----~g~~ql~v~~i~~~g 112 (529)
-|+.|.|.|++.. |. + +..+.++++.|+.-+
T Consensus 88 KG~~V~V~G~l~~~~w~dkdG~~r~~~~i~a~~i~~L~ 125 (132)
T 3ull_A 88 KGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLS 125 (132)
T ss_dssp TTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC-
T ss_pred CCCEEEEEEEEEECEEECCCCCEEEEEEEEEEEEEECC
T ss_conf 99699999998846179899989999999996999888
No 54
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=89.05 E-value=1.3 Score=23.63 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=47.1
Q ss_pred HCCCCEEEEEEECCCCC-----CCCCCEE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEE
Q ss_conf 00171899999705435-----6888627-9998748947999997352105866814598899999-966752884379
Q gi|254780791|r 30 SNLSHVCVRGEISGYRG-----IHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQ 102 (529)
Q Consensus 30 ~~~~~~~v~gEis~~~~-----~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~q 102 (529)
....+|-|.|.|.++.. .-+.|.+ .+.+-|+.+.|+.++|.- .++.|+-|.+.+ ++.-| +|.++
T Consensus 11 ~~~~~V~i~gkV~~i~~r~~~kdG~~~~v~~~~i~D~TG~ir~t~W~~-------~i~~Gd~v~i~~a~v~~~--~g~~e 81 (106)
T 2k75_A 11 LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------QLQDSDVVRIDNARVAQF--NGYLS 81 (106)
T ss_dssp TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------CCCTTEEEEEEEEEEEEE--TTEEE
T ss_pred CCCCCEEEEEEEEEECCCEEEECCCEEEEEEEEEECCCCEEEEEEECC-------CCCCCCEEEEEEEEEEEE--CCEEE
T ss_conf 899957999999595367899699768999999988997899999699-------889998999900899876--99799
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780791|r 103 IIIE 106 (529)
Q Consensus 103 l~v~ 106 (529)
|.+.
T Consensus 82 l~v~ 85 (106)
T 2k75_A 82 LSVG 85 (106)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9989
No 55
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=89.03 E-value=1.3 Score=23.63 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=48.9
Q ss_pred CEEEEEEECCCC---CC-CCCCE----EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEE-EECCCCEEEE
Q ss_conf 189999970543---56-88862----7999874894799999735210586681459889999-9966-7528843799
Q gi|254780791|r 34 HVCVRGEISGYR---GI-HSSGH----AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKIT-TFPGSSKYQI 103 (529)
Q Consensus 34 ~~~v~gEis~~~---~~-~~sGH----~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~-~y~~~g~~ql 103 (529)
.+.|.|-|.+.. .. .++|. +-+.|.|+.+.|++++|...+. +-..++.|+-|.+. +++. .|. |.++|
T Consensus 18 ~v~v~g~V~~~~~~r~~~~k~G~~~~~~~i~l~D~TG~I~vt~W~~~~~-~~~~l~~Gdvv~i~~~~vk~~~~--g~~~l 94 (115)
T 2k50_A 18 ETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK-LLKKFREGDVIRIKDVNIRGGFG--GRKEA 94 (115)
T ss_dssp EEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG-GGGTCCTTSEEEEEEEEECCCSS--SSCEE
T ss_pred EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCEEEEEEEHHHHH-HHCCCCCCCEEEEECCEECCCCC--CEEEE
T ss_conf 7679999998569768991799896899999984999799999502213-44269999999997009882359--94999
Q ss_pred EE------EEEEEC
Q ss_conf 99------971016
Q gi|254780791|r 104 II------ESLIPS 111 (529)
Q Consensus 104 ~v------~~i~~~ 111 (529)
.+ +.++|.
T Consensus 95 ~~~~~s~IevidP~ 108 (115)
T 2k50_A 95 HLMPRSTVEVLDPL 108 (115)
T ss_dssp EECTTCCEEEESSC
T ss_pred EECCCCEEEEECCC
T ss_conf 98898179996772
No 56
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=88.79 E-value=1.4 Score=23.50 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=55.6
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC----CCCCCCCEEEEEEEEEEECC--CCEEEEEEE
Q ss_conf 718999997054356888627999874894799999735210586----68145988999999667528--843799999
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE----FLPEEGIEFLVIGKITTFPG--SSKYQIIIE 106 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~----~~~~~G~~v~~~g~~~~y~~--~g~~ql~v~ 106 (529)
..|.|.|=|.+.|. .++-++++|.|..+.|.|++=+.....-. -.+..|+-|.|.|.|. -.+ .|.+.+.|+
T Consensus 17 ~~V~v~GrV~~~R~--~Gkl~F~~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~~~~V~v~G~v~-~~~~~~g~~el~~~ 93 (434)
T 1x54_A 17 KKVRLAGWVYTNMR--VGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVK-ADERAPGGAEVHVE 93 (434)
T ss_dssp CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEE-ECTTSGGGEEEEEE
T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEEEE-CCCCCCCCEEEEHH
T ss_conf 99999998670765--7992999998088258999979979999999996489956999999998-88888886785254
Q ss_pred EEEE
Q ss_conf 7101
Q gi|254780791|r 107 SLIP 110 (529)
Q Consensus 107 ~i~~ 110 (529)
.++.
T Consensus 94 ~i~i 97 (434)
T 1x54_A 94 KLEV 97 (434)
T ss_dssp EEEE
T ss_pred HHHH
T ss_conf 6555
No 57
>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe}
Probab=88.51 E-value=0.61 Score=26.61 Aligned_cols=82 Identities=17% Similarity=0.241 Sum_probs=46.3
Q ss_pred CCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 52899984784258--9999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 145 PKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 145 p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
.+++-|||.++... ...+...|.+. .+++..+ .+.|+.....|- .+..+.. .++|+ ||+=||||.-
T Consensus 91 ~kr~LIVtd~~~~~~~~~~v~~~L~~~-gi~v~~~--~~~~~pt~~~v~-~~~~~~~-------~~~D~-IIAVGGGSvi 158 (450)
T 1ta9_A 91 TKSAVVLADQNVWNICANKIVDSLSQN-GMTVTKL--VFGGEASLVELD-KLRKQCP-------DDTQV-IIGVGGGKTM 158 (450)
T ss_dssp SSEEEEEEEHHHHHHTHHHHHHHHHHT-TCEEEEE--EECSCCCHHHHH-HHHTTSC-------TTCCE-EEEEESHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEE--EECCCCCHHHHH-HHHHHHH-------CCCCE-EEEECCCHHH
T ss_conf 996999989248899999999999876-9979999--718998999999-9999752-------28998-9996796386
Q ss_pred HHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 42200769999999748904885
Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 223 DL~~FN~e~laraI~~~~iPVis 245 (529)
|..-| +.+...+|+|+
T Consensus 159 D~AK~-------ia~~~~~p~i~ 174 (450)
T 1ta9_A 159 DSAKY-------IAHSMNLPSII 174 (450)
T ss_dssp HHHHH-------HHHHTTCCEEE
T ss_pred HHHHH-------HHHHCCCCEEE
T ss_conf 88899-------88642786688
No 58
>1ujn_A Dehydroquinate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} SCOP: e.22.1.1
Probab=88.47 E-value=1.4 Score=23.34 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEECCCHHH-HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 102652899984784258-9999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r 141 IPFIPKIIAVITSPTGAV-IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 141 lP~~p~~i~vits~~~a~-~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
+|.+.+++.|||.++-.. ++++...+.. ..++.+|. ||.+ +++-...+..+.+.+ ....+-| +||+=|||
T Consensus 24 l~~~~~~~~iv~d~~v~~~~~~~~~~l~~---~~~~~i~~---gE~~-K~~~~~~~i~~~l~~-~~~~r~~-~ivaiGGG 94 (348)
T 1ujn_A 24 VPPLAGPAALLFDRRVEGFAQEVAKALGV---RHLLGLPG---GEAA-KSLEVYGKVLSWLAE-KGLPRNA-TLLVVGGG 94 (348)
T ss_dssp SCCCSSCEEEEEEGGGHHHHHHHHHHHTC---CCEEEECC---SGGG-SSHHHHHHHHHHHHH-HTCCTTC-EEEEEESH
T ss_pred HHHHHCCEEEEECCCHHHHHHHHHHHCCC---CEEEEECC---CCCC-CCHHHHHHHHHHHHH-CCCCCCC-CEEEECCE
T ss_conf 78875889999893389999999984587---55999689---8553-899999999999986-5999867-34897581
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 84442200769999999748904885
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.+-|+..| |-++|.-.+|.|.
T Consensus 95 ~v~D~agf-----~As~y~rgi~~i~ 115 (348)
T 1ujn_A 95 TLTDLGGF-----VAATYLRGVAYLA 115 (348)
T ss_dssp HHHHHHHH-----HHHHBTTCCEEEE
T ss_pred EEEEHHHH-----HHHHHHCCCEEEE
T ss_conf 24005899-----9999726944662
No 59
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=88.27 E-value=0.97 Score=24.79 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-------HHHHH----------CCHHHHHHHHHHCCCEEEEEE
Q ss_conf 1036799999999741003576777589995168884-------44220----------076999999974890488520
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-------EDLWH----------FNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-------eDL~~----------FN~e~laraI~~~~iPVisgI 247 (529)
....++..+|+.++... .+-+|||..+|+.. ..... .....+..++..||.|||++|
T Consensus 36 ~~~~~L~~~l~~~~~d~------~v~~vvl~g~g~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaaV 109 (265)
T 3kqf_A 36 ALLEELQNILTQINEEA------NTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAI 109 (265)
T ss_dssp HHHHHHHHHHHHHHTCT------TCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999999986489------956999965899613243125554200001100001356579999996898889999
Q ss_pred -CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf -577752-5898864123777214
Q gi|254780791|r 248 -GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
||=.-- .-+=+.+|+|..+|.+
T Consensus 110 ~G~a~GgG~~lal~~D~ria~~~a 133 (265)
T 3kqf_A 110 NGIALGGGTELSLACDFRIAAESA 133 (265)
T ss_dssp CSEEETHHHHHHHHSSEEEEETTC
T ss_pred EEEEEEHHHHHHHHCCEEEECCCC
T ss_conf 668951788998737889976998
No 60
>2x58_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, lyase, isomerase, peroxisome; HET: ADP COA; 2.80A {Rattus norvegicus}
Probab=88.15 E-value=1 Score=24.62 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 99999974890488520
Q gi|254780791|r 231 MIVRAIANSSIPIISAI 247 (529)
Q Consensus 231 ~laraI~~~~iPVisgI 247 (529)
.+.+.|.+||.|||++|
T Consensus 82 ~~~~~i~~~~kPvIaav 98 (727)
T 2x58_A 82 SLVDEIQRYQKPVLAAI 98 (727)
T ss_dssp HHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 99999994999899998
No 61
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978}
Probab=87.98 E-value=1.1 Score=24.19 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHC---------------CHHHHHHHHHHCCCEEEEEE
Q ss_conf 036799999999741003576777589995168884---442200---------------76999999974890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHF---------------NDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~F---------------N~e~laraI~~~~iPVisgI 247 (529)
-..++..++..++... .+.+|||.=.|+++ -||-.| ....+.++|..||.|||++|
T Consensus 33 ~~~~l~~~l~~~~~d~------~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav 106 (266)
T 3fdu_A 33 LYLWIAKALDEADQNK------DVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAV 106 (266)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999997589------9469999789842515731666542001310344443258999999997799879986
Q ss_pred -CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf -577752-5898864123777214
Q gi|254780791|r 248 -GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
||=.-- .-.=+.+|+|..++++
T Consensus 107 ~G~a~GgG~~lala~D~ria~~~a 130 (266)
T 3fdu_A 107 KGVAIGIGVTILLQADLVFADNTA 130 (266)
T ss_dssp CSEEETHHHHGGGGCSEEEECTTC
T ss_pred CCEEEECCCEEECCCCCCEECCCC
T ss_conf 384746452322152311114797
No 62
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis}
Probab=87.90 E-value=1.3 Score=23.70 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH----HHHHHCCH------------------HHHHHHHHHCCC
Q ss_conf 10367999999997410035767775899951688-84----44220076------------------999999974890
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI----EDLWHFND------------------EMIVRAIANSSI 241 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~----eDL~~FN~------------------e~laraI~~~~i 241 (529)
....++..+++.+.... .+-+||| +|+| .. -||..|.+ ..+.+.|..||.
T Consensus 35 ~~~~~L~~al~~~~~d~------~vr~vVl-~g~g~~ffs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pk 107 (287)
T 3gkb_A 35 TMMRELRTVLTTLADDS------SVRVIVF-SSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQ 107 (287)
T ss_dssp HHHHHHHHHHHHHHTCT------TCCEEEE-EESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999998689------9459999-6789885500327887652001033332107788999999999983999
Q ss_pred EEEEEE
Q ss_conf 488520
Q gi|254780791|r 242 PIISAI 247 (529)
Q Consensus 242 PVisgI 247 (529)
|||++|
T Consensus 108 PvIaav 113 (287)
T 3gkb_A 108 VTIVKL 113 (287)
T ss_dssp EEEEEE
T ss_pred CEEEEE
T ss_conf 889995
No 63
>1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.14.1.3 PDB: 1q51_A 1rjm_A* 1rjn_A*
Probab=87.86 E-value=1 Score=24.51 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC--------CCCH---HHHHHCC------------------------H
Q ss_conf 103679999999974100357677758999516--------8884---4422007------------------------6
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARG--------GGSI---EDLWHFN------------------------D 229 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG--------GGS~---eDL~~FN------------------------~ 229 (529)
.-..++..+++.++... .+-|||| +| |+++ .||-.|. -
T Consensus 64 ~m~~eL~~al~~~~~d~------~vrvvVl-tG~~~~~~sgG~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (314)
T 1q52_A 64 HTVDELYRVLDHARMSP------DVGVVLL-TGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHI 136 (314)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEE-EECCCCTTTCCCEEECCC-----------------------------CH
T ss_pred HHHHHHHHHHHHHHHCC------CCCEEEE-ECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999997499------9758999-5788766552102334767566531244433334201266788888999
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCCCHH-HHHHHCCCCCCCHH
Q ss_conf 999999974890488520-57775258-98864123777214
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETDWTL-ADYAADLRAPTPTG 269 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D~Tl-~D~VAD~Ra~TPTa 269 (529)
..+.++|..|+.|||.+| ||=.---+ +=+.+|.|..++.+
T Consensus 137 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ias~~a 178 (314)
T 1q52_A 137 LEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY 178 (314)
T ss_dssp HHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT
T ss_pred HHHHHHHHHCCCCEEEEECCEEEECHHHHHHHCCCHHHHHHH
T ss_conf 999999985899889998376610213887612311210037
No 64
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=87.82 E-value=1.2 Score=24.02 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCEEEEEECCCHHH-H-HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 52899984784258-9-999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 145 PKIIAVITSPTGAV-I-RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 145 p~~i~vits~~~a~-~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
++++.|||.++..- + ..+...+... .+++.++.. + +.....++..... ... .++|+ ||+=||||.-
T Consensus 34 ~~k~liVtd~~~~~~~~~~v~~~L~~~-~i~~~~~~~-~-~~~~~~~~~~~~~---~~~-----~~~D~-IIavGGGsv~ 101 (354)
T 3ce9_A 34 FKRVSLYFGEGIYELFGETIEKSIKSS-NIEIEAVET-V-KNIDFDEIGTNAF---KIP-----AEVDA-LIGIGGGKAI 101 (354)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTT-TCEEEEEEE-E-CCCBHHHHHHHHT---TSC-----TTCCE-EEEEESHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEEEC-C-CCCCHHHHHHHHH---HHH-----CCCCE-EEEECCCCCC
T ss_conf 895999989678899999999999877-998999858-9-9999899999999---865-----26888-9994697422
Q ss_pred HHHHC
Q ss_conf 42200
Q gi|254780791|r 223 DLWHF 227 (529)
Q Consensus 223 DL~~F 227 (529)
|+.-|
T Consensus 102 D~aK~ 106 (354)
T 3ce9_A 102 DAVKY 106 (354)
T ss_dssp HHHHH
T ss_pred CCHHH
T ss_conf 10368
No 65
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=87.82 E-value=1.3 Score=23.57 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--CH---HHHHH-------------CCHHHHHHHHHHCCCEEEEEE
Q ss_conf 0367999999997410035767775899951688--84---44220-------------076999999974890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGG--SI---EDLWH-------------FNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG--S~---eDL~~-------------FN~e~laraI~~~~iPVisgI 247 (529)
...++..+|..++... .+.+||| +|.| .+ -||-. ..-..+.++|..||.|||++|
T Consensus 32 ~~~~l~~~l~~~~~d~------~v~~vvl-~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v 104 (260)
T 1sg4_A 32 FLTELVISLEKLENDK------SFRGVIL-TSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAI 104 (260)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEE-EESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999999999998589------9559999-82899945289976554210100122212567899999755899789985
Q ss_pred -CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf -577752-5898864123777214
Q gi|254780791|r 248 -GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
||=.-- .-.=+.+|.|..|+++
T Consensus 105 ~G~a~GgG~~la~~~D~ria~~~a 128 (260)
T 1sg4_A 105 NGACPAGGCLVALTCDYRILADNP 128 (260)
T ss_dssp CEEBCHHHHHHHTTSSEEEEECCT
T ss_pred CCCEECCCCHHHCCCCEEEECCCC
T ss_conf 673105631111023323422223
No 66
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp}
Probab=87.82 E-value=1.3 Score=23.60 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CHHHHHHC---CH----------HHHHHHHHHCCCEEEE
Q ss_conf 0367999999997410035767775899951688-------84442200---76----------9999999748904885
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-------SIEDLWHF---ND----------EMIVRAIANSSIPIIS 245 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-------S~eDL~~F---N~----------e~laraI~~~~iPVis 245 (529)
...+|..+|+.+.... .+-+||| +|+| .+.++..+ ++ ..+..++..||.|||+
T Consensus 32 ~~~~l~~~l~~~~~d~------~v~~vVl-~g~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIa 104 (268)
T 3i47_A 32 LLTEMRIRLDSAINDT------NVRVIVL-KANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIA 104 (268)
T ss_dssp HHHHHHHHHHHHHHCT------TCSEEEE-EECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999999997499------9069999-16777633564155431112221000024678899999999848987899
Q ss_pred EE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 20-577752-5898864123777214
Q gi|254780791|r 246 AI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 246 gI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
+| ||=.-- .-.=+.+|.|..|+++
T Consensus 105 av~G~a~GgG~~lal~cD~ria~~~a 130 (268)
T 3i47_A 105 MVQGAAFGGGAGLAAACDIAIASTSA 130 (268)
T ss_dssp EECSEEETHHHHHHHHSSEEEEETTC
T ss_pred EECCEEEECCCHHHCCCCEEECCCCC
T ss_conf 96785850552111044245627997
No 67
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=87.74 E-value=1.6 Score=22.99 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=49.3
Q ss_pred CCEEEEEECCCHHH-H-HHHHHHHHHCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 52899984784258-9-9999986305975899972100111103--679999999974100357677758999516888
Q gi|254780791|r 145 PKIIAVITSPTGAV-I-RDILQRISCRFPLRVIIFPVKVQGDECP--KEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 145 p~~i~vits~~~a~-~-~D~~~~~~~r~p~~~~~~p~~vQG~~a~--~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
.+++.|||.++-+- + ..+...+..-.++.++.+|. ||.+. ..+.+-++.+... ...+- -+||+=|||.
T Consensus 34 ~~k~lii~d~~v~~~~~~~~~~~l~~~~~~~~~~~~~---gE~~Ks~~~~~~i~~~l~~~----~~~r~-~~iiaiGGG~ 105 (368)
T 2gru_A 34 FDQYIMISDSGVPDSIVHYAAEYFGKLAPVHILRFQG---GEEYKTLSTVTNLQERAIAL----GANRR-TAIVAVGGGL 105 (368)
T ss_dssp CSEEEEEEETTSCHHHHHHHHHHHTTTSCEEEEEECC---SGGGCSHHHHHHHHHHHHHT----TCCTT-EEEEEEESHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHC----CCCCC-CEEEEECCCH
T ss_conf 9979999898578999999999885179669999569---85428999999999999865----99977-5389965931
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 4442200769999999748904885
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+-|+..| |-++|.-.+|.|.
T Consensus 106 v~D~agf-----~As~~~RGi~~i~ 125 (368)
T 2gru_A 106 TGNVAGV-----AAGMMFRGIALIH 125 (368)
T ss_dssp HHHHHHH-----HHHHBTTCCEEEE
T ss_pred HHHHHHH-----HHHHHHCCCCEEE
T ss_conf 5548999-----9999618983795
No 68
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=87.66 E-value=1 Score=24.55 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCC-----------------HHHHHHHHHHCCCE
Q ss_conf 11036799999999741003576777589995168884----4422007-----------------69999999748904
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFN-----------------DEMIVRAIANSSIP 242 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN-----------------~e~laraI~~~~iP 242 (529)
..-..++..++..++.. ..-+||| +|.|.. -||-.|. -..+..+|..||.|
T Consensus 32 ~~~~~el~~al~~~~~d-------~~~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP 103 (261)
T 2gtr_A 32 PEVMREVQSALSTAAAD-------DSKLVLL-SAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKP 103 (261)
T ss_dssp HHHHHHHHHHHHHHHHS-------SCSCEEE-EESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHCC-------CCEEEEE-ECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999998629-------9769999-789986466888735422112332024789999998876787509998
Q ss_pred EEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 88520-577752-5898864123777214
Q gi|254780791|r 243 IISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 243 VisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
||++| ||=.=- .-.=+.+|+|..++.+
T Consensus 104 vIaav~G~a~GgG~~lal~~D~~ia~~~a 132 (261)
T 2gtr_A 104 IIVAVNGPAIGLGASILPLCDVVWANEKA 132 (261)
T ss_dssp EEEEECSCEETHHHHTGGGSSEEEEETTC
T ss_pred EEEEECCEEEECCCHHHHCHHHHHHHHHH
T ss_conf 99998781466211753000141233545
No 69
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A
Probab=87.48 E-value=1.1 Score=24.46 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------------HHHHHCCHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf 36799999999741003576777589995168884--------------44220076999999974890488520-5777
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------------EDLWHFNDEMIVRAIANSSIPIISAI-GHET 251 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------------eDL~~FN~e~laraI~~~~iPVisgI-GHE~ 251 (529)
..+|..++..+.... .+-+|||.=+|++. .+.+.++...+...++.||.|||++| ||=.
T Consensus 34 ~~~l~~~l~~~~~d~------~~~~vvl~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Iaai~G~a~ 107 (258)
T 2pbp_A 34 VAEIVAAVEAFDRNE------KVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLAL 107 (258)
T ss_dssp HHHHHHHHHHHHHCT------TCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHCCC------CEEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE
T ss_conf 999999999986099------85899990798640127538877313211467777767889985189988999806576
Q ss_pred CC-HHHHHHHCCCCCCCHH
Q ss_conf 52-5898864123777214
Q gi|254780791|r 252 DW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 252 D~-Tl~D~VAD~Ra~TPTa 269 (529)
=- .-.=+.+|.|..+|.+
T Consensus 108 GgG~~lal~~D~ria~~~a 126 (258)
T 2pbp_A 108 GGGFELALSCDLIVASSAA 126 (258)
T ss_dssp THHHHHHHTSSEEEEETTC
T ss_pred EHHHHHHHHCCEEEECCCC
T ss_conf 1668998627879987997
No 70
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=87.46 E-value=1.6 Score=22.86 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=46.7
Q ss_pred CEEEEEEECCCCC----CCCCCE----EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEE-EEEEECCCCEEEEE
Q ss_conf 1899999705435----688862----79998748947999997352105866814598899999-96675288437999
Q gi|254780791|r 34 HVCVRGEISGYRG----IHSSGH----AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIG-KITTFPGSSKYQII 104 (529)
Q Consensus 34 ~~~v~gEis~~~~----~~~sGH----~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g-~~~~y~~~g~~ql~ 104 (529)
++-|.|-|.++.. ..+.|. .-+.|-|+.++|++++|...+ .+.++.|+-|.+.| .++-| +|..+|.
T Consensus 16 ~v~v~g~V~~~~~~r~~~~~~G~~~~~~~~~i~D~tg~i~~t~W~~~~---~~~~~~G~vv~i~g~~v~~~--~g~~~l~ 90 (105)
T 3dm3_A 16 TATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT---DIDVGRGDYVRVRGYIREGY--YGGLECT 90 (105)
T ss_dssp EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG---GSCCCTTCEEEEEEEEEECT--TSSEEEE
T ss_pred EEEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEECCCC---CCCCCCCCEEEEEEEEEECC--CCCEEEE
T ss_conf 789999999925877988589988899999999299939999976010---25589999999986997145--8908999
Q ss_pred EEEE
Q ss_conf 9971
Q gi|254780791|r 105 IESL 108 (529)
Q Consensus 105 v~~i 108 (529)
+...
T Consensus 91 ~~~~ 94 (105)
T 3dm3_A 91 ANYV 94 (105)
T ss_dssp EEEE
T ss_pred ECCC
T ss_conf 7996
No 71
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=87.31 E-value=1.6 Score=22.80 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-CCCCCCCCCEEEEEEEEEEEC------CCCEEEEEE
Q ss_conf 7189999970543568886279998748947999997352105-866814598899999966752------884379999
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK-IEFLPEEGIEFLVIGKITTFP------GSSKYQIII 105 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~-~~~~~~~G~~v~~~g~~~~y~------~~g~~ql~v 105 (529)
..|+|.|=|.+.|. .++-+++.|.|..+.|.||+=++.... .--.+..|.-|.|.|.|..-+ +.|.+.+.|
T Consensus 17 ~~V~v~Gwv~~~R~--~g~l~Fi~l~D~s~~lQvv~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~~~g~~El~v 94 (580)
T 1l0w_A 17 EEVVLEGWVNRRRD--LGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVEL 94 (580)
T ss_dssp CEEEEEEEEEEEEE--CSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEE
T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf 98999999770884--8983999999798879999968842289996599987899999999178768868887399999
Q ss_pred EEEEECCC
Q ss_conf 97101680
Q gi|254780791|r 106 ESLIPSGS 113 (529)
Q Consensus 106 ~~i~~~g~ 113 (529)
+.|+.-|.
T Consensus 95 ~~i~vl~~ 102 (580)
T 1l0w_A 95 SALEVLAE 102 (580)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEC
T ss_conf 99999875
No 72
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=87.17 E-value=1.7 Score=22.73 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=57.5
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC---CC--CCCCCCCEEEEEEEEEE------ECCCCEE
Q ss_conf 7189999970543568886279998748947999997352105---86--68145988999999667------5288437
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK---IE--FLPEEGIEFLVIGKITT------FPGSSKY 101 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~---~~--~~~~~G~~v~~~g~~~~------y~~~g~~ 101 (529)
..|+|.|=|.+.|. .++=+++.|.|....|.||+.++.... .+ -.+..|.-|-|.|.|.. -.+.|.+
T Consensus 63 ~~V~v~GrV~~~R~--~Gk~~Fl~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~esvv~V~G~V~~~~~~~~~~~~g~i 140 (548)
T 3i7f_A 63 KTVTIRARVQAVRG--KGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDV 140 (548)
T ss_dssp CEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSE
T ss_pred CEEEEEEEEEEEEC--CCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCE
T ss_conf 98999899887875--8985999997187118999978988759999999659986489999899746887676899867
Q ss_pred EEEEEEEEEC
Q ss_conf 9999971016
Q gi|254780791|r 102 QIIIESLIPS 111 (529)
Q Consensus 102 ql~v~~i~~~ 111 (529)
.+.|++|..-
T Consensus 141 Ei~v~~i~vl 150 (548)
T 3i7f_A 141 EIHVTSIAVV 150 (548)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
T ss_conf 9999799998
No 73
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=87.11 E-value=0.24 Score=30.25 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=44.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCC---CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 2899984784258999999863059---7589997210011110367999999997410035767775899951688844
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRF---PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~---p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
+|+.|||+++.+ .......+.+.+ .+.+.+|+ |.. +.+.++++..+.. ..+|+ ||+=||||.-
T Consensus 42 ~r~liVt~~~~~-~~~~~~~v~~~L~~~~~~~~v~~----~~~-~~~~~e~l~~~~~-------~~~D~-IIavGGGs~i 107 (376)
T 1kq3_A 42 ERAFVVIDDFVD-KNVLGENFFSSFTKVRVNKQIFG----GEC-SDEEIERLSGLVE-------EETDV-VVGIGGGKTL 107 (376)
T ss_dssp SEEEEEECHHHH-HHTTCTTGGGGCSSSEEEEEECC----SSC-BHHHHHHHHTTCC-------TTCCE-EEEEESHHHH
T ss_pred CEEEEEECCCHH-HHHHHHHHHHHHHHCCCEEEECC----CCC-CCHHHHHHHHHHH-------HCCCE-EEEECCCHHH
T ss_conf 928999897266-61589999999987698699718----999-9489999999986-------09998-9996785211
Q ss_pred HHHHCCHHHHHHHHHH-CCCEE-----EEEECCC
Q ss_conf 4220076999999974-89048-----8520577
Q gi|254780791|r 223 DLWHFNDEMIVRAIAN-SSIPI-----ISAIGHE 250 (529)
Q Consensus 223 DL~~FN~e~laraI~~-~~iPV-----isgIGHE 250 (529)
|+ |++|+- ..+|+ ..|.|=|
T Consensus 108 D~--------aK~ia~~~~~Pli~IPTt~~tgse 133 (376)
T 1kq3_A 108 DT--------AKAVAYKLKKPVVIVPTIASTDAP 133 (376)
T ss_dssp HH--------HHHHHHHTTCCEEEEESSCCCSCT
T ss_pred HH--------HHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 20--------188884247983575675776856
No 74
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=87.02 E-value=1.5 Score=23.11 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHHHHC-------------C--HHHHHHHHHHCCCEEE
Q ss_conf 1103679999999974100357677758999516888-4---442200-------------7--6999999974890488
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDLWHF-------------N--DEMIVRAIANSSIPII 244 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL~~F-------------N--~e~laraI~~~~iPVi 244 (529)
.....++..+|+.++. +.+.+||| +|.|. + -||-.| - -..+.++|..||.|||
T Consensus 33 ~~~~~el~~~l~~~~~-------~~v~vvvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvI 104 (267)
T 3hp0_A 33 DTLIEECLQVLNQCET-------STVTVVVL-EGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTI 104 (267)
T ss_dssp SHHHHHHHHHHHHHHH-------SSCCEEEE-ECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEE
T ss_pred HHHHHHHHHHHHHHHC-------CCCEEEEE-ECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9999999999999746-------99559999-789987347997322520022100222321689999999973898889
Q ss_pred EEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 520-577752-5898864123777214
Q gi|254780791|r 245 SAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 245 sgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
++| ||-.-- .-+-+.+|+|..+|.+
T Consensus 105 aav~G~a~GgG~~lalacD~ria~~~a 131 (267)
T 3hp0_A 105 SHVRGKVNAGGLGFVSATDIAIADQTA 131 (267)
T ss_dssp EEECSEEETTHHHHHHHSSEEEECTTC
T ss_pred EEEECCEECCHHHHHHHHHHHHHHHCC
T ss_conf 996563231306877764766665401
No 75
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=86.93 E-value=1.3 Score=23.61 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCC------------------HHHHHHHHHHCCCE
Q ss_conf 1036799999999741003576777589995168884----4422007------------------69999999748904
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFN------------------DEMIVRAIANSSIP 242 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN------------------~e~laraI~~~~iP 242 (529)
....++..+|+.+.... .+-|||| +|.|.. -||-.|. -..+..+|..||.|
T Consensus 30 ~~~~el~~~l~~~~~d~------~v~vvvl-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp 102 (269)
T 1nzy_A 30 KAMQEVTDALNRAEEDD------SVGAVMI-TGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRP 102 (269)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEE-EESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHCC------CEEEEEE-ECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999998588------9169999-7999863578648876413454311567888888899999999968999
Q ss_pred EEEEE-CCCCCC-HHHHHHHCCCCCCCH
Q ss_conf 88520-577752-589886412377721
Q gi|254780791|r 243 IISAI-GHETDW-TLADYAADLRAPTPT 268 (529)
Q Consensus 243 VisgI-GHE~D~-Tl~D~VAD~Ra~TPT 268 (529)
||++| ||=.-- .-+=+.+|+|..+++
T Consensus 103 ~Iaav~G~a~GgG~~lal~~D~ria~~~ 130 (269)
T 1nzy_A 103 VLAAINGVAAGGGLGISLASDMAICADS 130 (269)
T ss_dssp EEEEECSEEETHHHHHHHHSSEEEEETT
T ss_pred EEEEEHHHHCCCCHHHHHCCCHHHHHHH
T ss_conf 9997330205640565541214456453
No 76
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=86.88 E-value=1.7 Score=22.61 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=48.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 28999847842589999998630---5975899972100111103--679999999974100357677758999516888
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECP--KEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~--~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
.++.|||.++-+.+ +...+.+ .+.++++++| .||.+. ..+.+.++.+... ...+.| +||+=|||+
T Consensus 32 ~k~~iv~D~~v~~~--~~~~v~~~l~~~~i~~~~~~---~gE~~Ks~~~~~~i~~~l~~~----~~~r~d-~iiavGGG~ 101 (354)
T 1xah_A 32 DQSFLLIDEYVNQY--FANKFDDILSYENVHKVIIP---AGEKTKTFEQYQETLEYILSH----HVTRNT-AIIAVGGGA 101 (354)
T ss_dssp SCEEEEEEHHHHHH--HHHHHC------CEEEEEEC---SGGGGCSHHHHHHHHHHHHTT----CCCTTC-EEEEEESHH
T ss_pred CCEEEEECCCHHHH--HHHHHHHHHHHCCCEEEEEC---CCCCCCCHHHHHHHHHHHHHC----CCCCCC-EEEEECCCC
T ss_conf 97999989857899--99999999976797799976---987668989999999999976----989876-179965873
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf 444220076999999974890488
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVi 244 (529)
.-|+..| +-+.+.-++|.|
T Consensus 102 v~D~akf-----vA~~~~rgi~~i 120 (354)
T 1xah_A 102 TGDFAGF-----VAATLLRGVHFI 120 (354)
T ss_dssp HHHHHHH-----HHHHBTTCCEEE
T ss_pred CHHHHHH-----HHHHHCCCCCEE
T ss_conf 0225988-----899863797426
No 77
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A
Probab=86.88 E-value=0.58 Score=26.80 Aligned_cols=78 Identities=23% Similarity=0.231 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-------CHHHHHHC-----CHHHHHHHHHHCCCEEEEEE-CCCC
Q ss_conf 10367999999997410035767775899951688-------84442200-----76999999974890488520-5777
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-------SIEDLWHF-----NDEMIVRAIANSSIPIISAI-GHET 251 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-------S~eDL~~F-----N~e~laraI~~~~iPVisgI-GHE~ 251 (529)
....++..+++.+.... .+-+||| +|.| .++++..- .-..+.+++..||.|||++| ||=.
T Consensus 30 ~~~~el~~~~~~~~~d~------~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~ 102 (243)
T 2q35_A 30 SIVEGLRHCFSVVAQNQ------QYKVVIL-TGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSF 102 (243)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEE-ECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEE
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCEEE
T ss_conf 99999999999997698------9679999-7889844798844544202211378999999998489989999688577
Q ss_pred CC-HHHHHHHCCCCCCCHH
Q ss_conf 52-5898864123777214
Q gi|254780791|r 252 DW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 252 D~-Tl~D~VAD~Ra~TPTa 269 (529)
-- .-.=+.+|+|..++++
T Consensus 103 GgG~~lal~~D~~ia~~~a 121 (243)
T 2q35_A 103 GGGLLLGLYADFVVFSQES 121 (243)
T ss_dssp THHHHHHHTSSEEEEESSS
T ss_pred ECCCHHCCCCCEEEECCCC
T ss_conf 1666202046678752434
No 78
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=86.83 E-value=0.63 Score=26.46 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=49.0
Q ss_pred CCCCEEEEEEECC---CCCCCCCCEEE--EEEE------CC--------CCEEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 0171899999705---43568886279--9987------48--------9479999973521058668145988999999
Q gi|254780791|r 31 NLSHVCVRGEISG---YRGIHSSGHAY--FSLK------DN--------HSRIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529)
Q Consensus 31 ~~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~--------~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529)
++..|-+.|-|.. ++. -.+|+.| |+|- +. ..-++|++|...+..+.-.++.|+.|+|.|+
T Consensus 5 ~~N~v~l~G~l~~dPe~r~-t~~G~~~~~f~la~~~~~~~~~~~~~~~~t~~~~v~~w~~~Ae~~~~~l~KG~~V~V~G~ 83 (178)
T 1eqq_A 5 GVNKVILVGNLGQDPEVRY-MPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CEEEEEEEEEESSSCCCCE-ETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred CCCEEEEEEECCCCCEEEE-CCCCCEEEEEEEEECCCCEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCCEEEEEEE
T ss_conf 8758999998576988988-789988999999972551004788331211589889945024334554069998999987
Q ss_pred EE--EEC-CCCE
Q ss_conf 66--752-8843
Q gi|254780791|r 92 IT--TFP-GSSK 100 (529)
Q Consensus 92 ~~--~y~-~~g~ 100 (529)
+. .|. ..|.
T Consensus 84 l~~~~~~d~~G~ 95 (178)
T 1eqq_A 84 LRTRKWTDQSGQ 95 (178)
T ss_dssp EEEEEEECSSSE
T ss_pred EEEEEEECCCCC
T ss_conf 761468888996
No 79
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=86.64 E-value=1.8 Score=22.51 Aligned_cols=21 Identities=5% Similarity=-0.039 Sum_probs=12.1
Q ss_pred HHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 69999999748904885205777
Q gi|254780791|r 229 DEMIVRAIANSSIPIISAIGHET 251 (529)
Q Consensus 229 ~e~laraI~~~~iPVisgIGHE~ 251 (529)
.+.+.+.+++ +|-|.||=+..
T Consensus 168 ~~~~~~~l~~--~pnivgiKds~ 188 (344)
T 2hmc_A 168 ADLFFALRAE--HKNLVGFKEFG 188 (344)
T ss_dssp HHHHHHHHHH--CTTEEEEEECS
T ss_pred HHHHHHHHCC--CCCEEEEEECC
T ss_conf 7999999725--89979999788
No 80
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=86.48 E-value=1.3 Score=23.64 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=26.0
Q ss_pred HHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 99999974890488520-577752-5898864123777214
Q gi|254780791|r 231 MIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 231 ~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
.+.+.|..||.|||++| ||-.-- .-+=+.+|+|..++++
T Consensus 148 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lal~~D~ria~~~a 188 (333)
T 3njd_A 148 RGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADA 188 (333)
T ss_dssp HHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTC
T ss_pred HHHHHHHHCCCCEEEEECCEEEECCCEECCCCCEEEECCCC
T ss_conf 99999995899889997887862433110357779987998
No 81
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, structural genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=86.34 E-value=1.3 Score=23.62 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 999999974890488520-577752-5898864123777214
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
..+.+.+..||.|||++| ||=.=- .-.=+.+|.|..++++
T Consensus 111 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a 152 (280)
T 2f6q_A 111 REFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152 (280)
T ss_dssp HHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTC
T ss_pred HHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCC
T ss_conf 999999996899889997686875554100344532205685
No 82
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=86.13 E-value=1.4 Score=23.52 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------------HHHHHCCHHHHHHHHHHCCCEEEEEE-C
Q ss_conf 11036799999999741003576777589995168884--------------44220076999999974890488520-5
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------------EDLWHFNDEMIVRAIANSSIPIISAI-G 248 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------------eDL~~FN~e~laraI~~~~iPVisgI-G 248 (529)
.....+|..+|+.++... .+-+|||.-.|+.. ++........+...+..||.|||++| |
T Consensus 36 ~~~~~~l~~~l~~~~~d~------~v~~vvl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIa~i~G 109 (263)
T 3moy_A 36 QTLEAEVLDAARDFDADL------EIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAG 109 (263)
T ss_dssp HHHHHHHHHHHHHHHHCT------TCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECB
T ss_pred HHHHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCHHHHHCCCCCEEEEECC
T ss_conf 999999999999873289------81699986785454167633542035631022201210023430499979999886
Q ss_pred CCCC-CHHHHHHHCCCCCCCHH
Q ss_conf 7775-25898864123777214
Q gi|254780791|r 249 HETD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 249 HE~D-~Tl~D~VAD~Ra~TPTa 269 (529)
|=.= =.-.=+.+|.|..+|.+
T Consensus 110 ~a~GgG~~lal~cD~ria~~~a 131 (263)
T 3moy_A 110 YALGGGCELAMLCDLVIAADTA 131 (263)
T ss_dssp EEETHHHHHHHHSSEEEEETTC
T ss_pred CCHHHHHHHHHHCCEEEEECCC
T ss_conf 1539999999978999982998
No 83
>3ome_A Enoyl-COA hydratase; ssgcid, structural genomics, structural genomics center for infectious disease, lyase; 2.05A {Mycobacterium smegmatis str}
Probab=86.01 E-value=1.4 Score=23.25 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CH---HHHHHCC------------------HHHHHHHHHHCCCEEE
Q ss_conf 367999999997410035767775899951688-84---4422007------------------6999999974890488
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SI---EDLWHFN------------------DEMIVRAIANSSIPII 244 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~---eDL~~FN------------------~e~laraI~~~~iPVi 244 (529)
..++..+|..+.... .+-+||| +|.| ++ -||..|. -..+.+.+..||.|||
T Consensus 52 ~~eL~~al~~~~~d~------~v~~vVl-tg~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 124 (282)
T 3ome_A 52 LDELDAAWTRAAEDN------EVKVIIL-RANGKHFSAGHDLRGGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPSI 124 (282)
T ss_dssp HHHHHHHHHHHHHCT------TCCEEEE-EESSSCSBCCBCCC-------CCCHHHHHHHHHHHTTHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHCC------CEEEEEE-ECCCCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 999999999998688------9179998-268774013522431244443320245578899999999999981999899
Q ss_pred EEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 520-577752-5898864123777214
Q gi|254780791|r 245 SAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 245 sgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
++| ||=.-- .-+=+.+|+|..++.+
T Consensus 125 aav~G~a~GgG~~lal~~D~ria~~~a 151 (282)
T 3ome_A 125 AAVQGRCISGGLLLCWPCDLILASDDA 151 (282)
T ss_dssp EEECSEEEGGGHHHHTTSSEEEEETTC
T ss_pred EEECCCCCHHHHHHHHHCCHHHHCCCC
T ss_conf 996583132689997600415535576
No 84
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=85.93 E-value=1.9 Score=22.23 Aligned_cols=144 Identities=22% Similarity=0.330 Sum_probs=77.1
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99997352105866814598899999966752884379999971016800799999999997654012261001631026
Q gi|254780791|r 65 DAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFI 144 (529)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~ 144 (529)
.-++|+++++.++ -|+ +|+|=-+.-+|.++| |.|.+ ...+++ ....
T Consensus 16 ~~~~~~~~~~~~~-----~m~-----~i~v~~~~~sY~i~I------G~~~l-----------~~~~~~-------~~~~ 61 (390)
T 3okf_A 16 ENLYFQSNAMECK-----TME-----RITVNLGERSYPISI------GAGLF-----------ANPALL-------SLSA 61 (390)
T ss_dssp ------------------CEE-----EEEECCGGGCEEEEE------ETTGG-----------GCGGGG-------CCCT
T ss_pred HHHHHHHCCCCCC-----CCE-----EEEECCCCCCCCEEE------CCCCC-----------CCHHHH-------HCCC
T ss_conf 2455442140007-----562-----999818997875798------47721-----------374566-------3448
Q ss_pred CCEEEEEECCCHHHH--HHHHHHHHHC-CCEEEEEEECCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 528999847842589--9999986305-97589997210011110--367999999997410035767775899951688
Q gi|254780791|r 145 PKIIAVITSPTGAVI--RDILQRISCR-FPLRVIIFPVKVQGDEC--PKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 145 p~~i~vits~~~a~~--~D~~~~~~~r-~p~~~~~~p~~vQG~~a--~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
++|+.|||-++-+.+ ..+...+... +++.++.+|. ||.+ -..+.+-++.+...+ ..+ +-+||+=|||
T Consensus 62 ~~r~~vI~D~~v~~l~~~~l~~~L~~~~~~v~~~~~~~---gE~~Ks~~~~~~i~~~l~~~~----~~r-~~~viaiGGG 133 (390)
T 3okf_A 62 KQKVVIVTNHTVAPLYAPAIISLLDHIGCQHALLELPD---GEQYKTLETFNTVMSFLLEHN----YSR-DVVVIALGGG 133 (390)
T ss_dssp TCEEEEEEETTTHHHHHHHHHHHHHHHTCEEEEEEECS---SGGGCBHHHHHHHHHHHHHTT----CCT-TCEEEEEESH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC---CCCCCCHHHHHHHHHHHHHHC----CCC-CCEEEEECCC
T ss_conf 99899998983679999999999986699469999689---954289999999999987622----687-7137971797
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 84442200769999999748904885205777525898864
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA 260 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529)
..-|+..| |-+.|.-.+|.|. +-||++-+|.
T Consensus 134 ~v~Dlagf-----vAs~y~RGi~~i~-----iPTTlla~vD 164 (390)
T 3okf_A 134 VIGDLVGF-----AAACYQRGVDFIQ-----IPTTLLSQVD 164 (390)
T ss_dssp HHHHHHHH-----HHHHBTTCCEEEE-----EECSHHHHHH
T ss_pred CCHHHHHH-----HHHHHHCCCCEEE-----CCCHHHCCCC
T ss_conf 20318899-----9999828975564-----0435640565
No 85
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=85.84 E-value=1.3 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCCCH-HHHHHHCCCCCCCH
Q ss_conf 999999974890488520-5777525-89886412377721
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETDWT-LADYAADLRAPTPT 268 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D~T-l~D~VAD~Ra~TPT 268 (529)
..+.++|..||.|||++| ||=.--- -.=+.+|.|..|+.
T Consensus 93 ~~l~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~iaa~e 133 (289)
T 3h0u_A 93 GMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133 (289)
T ss_dssp HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHCCEEEECCC
T ss_conf 99999999689989980599524630378771771356358
No 86
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=85.70 E-value=1.9 Score=22.29 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=49.2
Q ss_pred CCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEECCCCCC-CHHH-------HHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 026528999847842-5899999986305975899972100111-1036-------799999999741003576777589
Q gi|254780791|r 142 PFIPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIFPVKVQGD-ECPK-------EIANAILQLNTLKEGRTCPRPDII 212 (529)
Q Consensus 142 P~~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~p~~vQG~-~a~~-------~i~~ai~~~~~~~~~~~~~~~D~i 212 (529)
|..-+|||||+..+- ..=.||.+.+.++-+..+.++.+++-.. ..+. ++.+++..+.. -.+|+|
T Consensus 22 ~~~~~RIGlivPssN~~vE~E~~~m~~~~~~~~v~~h~sRi~~~~~t~e~l~~m~~~l~~a~~~l~~-------~~~d~I 94 (273)
T 2xed_A 22 AMGIRRIGLVVPSSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVSPEGLAAMNAQRERCVLEIAD-------AAPEVI 94 (273)
T ss_dssp CCSSEEEEEEEETTCCSHHHHHHHHHTTCSSCCEEEEEEEECCCBCSHHHHHHHHTTHHHHHHHHHT-------TCCSEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC-------CCCCEE
T ss_conf 7778527999768877269999998744899737999502326999988999988768999986420-------466778
Q ss_pred EEECCCCCHHHHHHCC---HHHHHHHHHH--CCCEEEEEE
Q ss_conf 9951688844422007---6999999974--890488520
Q gi|254780791|r 213 ILARGGGSIEDLWHFN---DEMIVRAIAN--SSIPIISAI 247 (529)
Q Consensus 213 ii~RGGGS~eDL~~FN---~e~laraI~~--~~iPVisgI 247 (529)
+.+--+||.--=..++ ++.+...|.. ..+||+|..
T Consensus 95 ~~gcTsas~~~G~~~~~~~~~~i~~~i~~~~~~~pv~t~~ 134 (273)
T 2xed_A 95 LYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSA 134 (273)
T ss_dssp EECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHH
T ss_pred EEECCHHEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 8704300145275077899999999985169998422789
No 87
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens}
Probab=85.65 E-value=1 Score=24.59 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 999999974890488520-577752-5898864123777214
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
..+..++..||.|||++| ||=.=- .-+=+.+|.|..++.+
T Consensus 116 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a 157 (287)
T 2vx2_A 116 SKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKS 157 (287)
T ss_dssp HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred HHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCCCEECCCC
T ss_conf 999999972898779996886616678887605645377886
No 88
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metabolism, lipid metabolism, lyase; 1.80A {Mycobacterium tuberculosis}
Probab=85.57 E-value=0.87 Score=25.23 Aligned_cols=76 Identities=18% Similarity=0.178 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HH-----------HHHCCHHHHHHHHHHCCCEEEEEE-CCC
Q ss_conf 3679999999974100357677758999516888-4---44-----------220076999999974890488520-577
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---ED-----------LWHFNDEMIVRAIANSSIPIISAI-GHE 250 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eD-----------L~~FN~e~laraI~~~~iPVisgI-GHE 250 (529)
..++..+++.+.... .+.|||+ +|.|- + .| .+.-+-..+...++.||.|||++| ||=
T Consensus 54 ~~~l~~al~~~~~d~------~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIa~v~G~a 126 (278)
T 3h81_A 54 MNEVTSAATELDDDP------DIGAIII-TGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYA 126 (278)
T ss_dssp HHHHHHHHHHHHTCT------TCCEEEE-ECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEECBEE
T ss_pred HHHHHHHHHHHHHCC------CEEEEEE-ECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEE
T ss_conf 999999999997588------8489999-479874003675787652111121367888887775348998999980727
Q ss_pred CCC-HHHHHHHCCCCCCCHH
Q ss_conf 752-5898864123777214
Q gi|254780791|r 251 TDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 251 ~D~-Tl~D~VAD~Ra~TPTa 269 (529)
.=- .-.=+.+|+|..||.+
T Consensus 127 ~GgG~~lal~~D~ria~~~a 146 (278)
T 3h81_A 127 LGGGCELAMMCDVLIAADTA 146 (278)
T ss_dssp ETHHHHHHHHSSEEEEETTC
T ss_pred CHHHHHHHHHCCEEEEECCC
T ss_conf 17989999978999983998
No 89
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=85.27 E-value=1.9 Score=22.30 Aligned_cols=77 Identities=18% Similarity=0.001 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH-----HHHHHC---------------C--HHHHHHHHHHCCCEE
Q ss_conf 036799999999741003576777589995168884-----442200---------------7--699999997489048
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI-----EDLWHF---------------N--DEMIVRAIANSSIPI 243 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~-----eDL~~F---------------N--~e~laraI~~~~iPV 243 (529)
-..++..+++.++... .+.+||| +|.|.- -||..| . -..+...++.||.||
T Consensus 32 ~~~el~~~l~~~~~d~------~v~~vVl-~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPv 104 (263)
T 3lke_A 32 LGTSLLEAIRAGNNET------SIHSIIL-QSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVT 104 (263)
T ss_dssp HHHHHHHHHHHHHHCS------SCCEEEE-EESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHHHHHHHCCC------CCEEEEE-ECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999999985099------9579999-63898641688621023200111115778888999999999998399989
Q ss_pred EEEEC-CCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 85205-77752-5898864123777214
Q gi|254780791|r 244 ISAIG-HETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 244 isgIG-HE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
|++|- |=.-- .-.=+.+|.|..|+++
T Consensus 105 Iaav~G~a~GgG~~lal~~D~ria~~~a 132 (263)
T 3lke_A 105 VALINGYAYGGGFNMMLACDRRIALRRA 132 (263)
T ss_dssp EEEECSEEETHHHHGGGGSSEEEEETTC
T ss_pred EEEECCCCCCCCHHHHHHCCEEEECCCC
T ss_conf 9997683560654887402010224666
No 90
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1
Probab=85.22 E-value=2 Score=21.97 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=55.6
Q ss_pred HHHHHHHCC-CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECC--CCE
Q ss_conf 999974001-71899999705435688862799987489479999973521058668145988999999667528--843
Q gi|254780791|r 24 LKHIVESNL-SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPG--SSK 100 (529)
Q Consensus 24 i~~~l~~~~-~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~--~g~ 100 (529)
|+++ +.+. ..|.|.|=|.+.|. .++-+++.|+|..+.|.|++=+ .+ .+..|.-|.|.|.+. -.+ .|+
T Consensus 5 i~dl-~~~~g~~V~v~G~v~~~R~--~gkl~Fi~lrD~~g~iQvv~~~-----~~-~~~~es~v~v~G~v~-~~~~~~g~ 74 (422)
T 1n9w_A 5 VRDL-KAHVGQEVELLGFLHWRRD--LGRIQFLLLRDRSGVVQVVTGG-----LK-LPLPESALRVRGLVV-ENAKAPGG 74 (422)
T ss_dssp GGGG-GGCTTSEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEES-----CC-CCCTTCEEEEEEEEE-ECTTSTTS
T ss_pred HHHH-HHCCCCEEEEEEEEEEEEE--CCCEEEEEEEECCCCEEEEECC-----CC-CCCCCCEEEEEEEEE-CCCCCCCC
T ss_conf 5427-5589998999999998980--8986999999498008999876-----62-679997899999998-26999978
Q ss_pred EEEEEEEEEEC
Q ss_conf 79999971016
Q gi|254780791|r 101 YQIIIESLIPS 111 (529)
Q Consensus 101 ~ql~v~~i~~~ 111 (529)
+.+.++++..-
T Consensus 75 lel~~~~l~vl 85 (422)
T 1n9w_A 75 LEVQAKEVEVL 85 (422)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEE
T ss_conf 89998399999
No 91
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=85.20 E-value=1.7 Score=22.59 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHHHHC--------------CHHHHHHHHHHCCCEEEEEE
Q ss_conf 03679999999974100357677758999516888-4---442200--------------76999999974890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDLWHF--------------NDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL~~F--------------N~e~laraI~~~~iPVisgI 247 (529)
...+|..+++.++... .+-|||| +|.|. + -||-.| .-..+.+++..||.|||++|
T Consensus 52 ~~~eL~~al~~~~~d~------~i~vvvl-~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvIa~v 124 (263)
T 2j5g_A 52 THREFPDAFYDISRDR------DNRVVIL-TGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAV 124 (263)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEE-ECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999997599------9859999-78899752887231334445531014667899999999996699758761
Q ss_pred CCC-CC-CHHHHHHHCCCCCCCHHH
Q ss_conf 577-75-258988641237772145
Q gi|254780791|r 248 GHE-TD-WTLADYAADLRAPTPTGA 270 (529)
Q Consensus 248 GHE-~D-~Tl~D~VAD~Ra~TPTaA 270 (529)
+-- .- -.++ +.+|.|..++.+.
T Consensus 125 ~G~a~GGg~la-l~cD~~ia~~~a~ 148 (263)
T 2j5g_A 125 NGAALLHSEYI-LTTDIILASENTV 148 (263)
T ss_dssp CSEECSCGGGG-GGCSEEEEETTCE
T ss_pred CCCEEEEEEEC-CCCCEEEECCCCE
T ss_conf 88547887742-5563478647866
No 92
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=85.17 E-value=2 Score=21.95 Aligned_cols=107 Identities=17% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCCCEEEEEEEEEEEC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH-CCCE
Q ss_conf 2884379999971016--800799999999997654012261001631026528999847842589999998630-5975
Q gi|254780791|r 96 PGSSKYQIIIESLIPS--GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISC-RFPL 172 (529)
Q Consensus 96 ~~~g~~ql~v~~i~~~--g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~-r~p~ 172 (529)
+..|.|=.-+.--.+. ...+|...|+++-+++. .+-...-+.-|+||+|..|.+|..++|++...+. ..|.
T Consensus 45 ~~~~~FFmR~~f~~~~~~~~~~l~~~f~~~a~~~~------m~~~l~~~~~k~riaIlvSg~g~~l~~Ll~~~~~g~l~~ 118 (286)
T 3n0v_A 45 RQSGRFFIRVEFRQPDDFDEAGFRAGLAERSEAFG------MAFELTAPNHRPKVVIMVSKADHCLNDLLYRQRIGQLGM 118 (286)
T ss_dssp TTTTEEEEEEEEECCSSCCHHHHHHHHHHHHGGGT------CEEEEECTTCCCEEEEEESSCCHHHHHHHHHHHTTSSCC
T ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCC------EECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCE
T ss_conf 88884899999976999899999988998752112------001113656783589996488567999999998499875
Q ss_pred EEEE---------------------EECCCCCC-CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 8999---------------------72100111-1036799999999741003576777589995168
Q gi|254780791|r 173 RVII---------------------FPVKVQGD-ECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529)
Q Consensus 173 ~~~~---------------------~p~~vQG~-~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529)
+|.+ +|+.-+.. ....++.+.|+.. ++|+||+++=+
T Consensus 119 ~I~~ViSN~~~~~~l~~~~~i~~~~~~~~~~~~~~~e~~~~~~l~~~----------~~Dlivlagy~ 176 (286)
T 3n0v_A 119 DVVAVVSNHPDLEPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEET----------GAELVILARYM 176 (286)
T ss_dssp EEEEEEESSSTTHHHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHH----------TCSEEEESSCC
T ss_pred EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC----------CCEEEEEEECC
T ss_conf 99998358566899999854994599847654045545688898637----------96599997056
No 93
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=85.05 E-value=1.7 Score=22.59 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCC------CHH--------HHHHCCH--HHHHHHHHHCCCEEEEE
Q ss_conf 110367999999997410035767775899951-688------844--------4220076--99999997489048852
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGG------SIE--------DLWHFND--EMIVRAIANSSIPIISA 246 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGG------S~e--------DL~~FN~--e~laraI~~~~iPVisg 246 (529)
..-..+|..+|..++... .+.+|||.= |++ -+. ++..|.+ ..+.++|..||.|||++
T Consensus 38 ~~~~~el~~~l~~~~~d~------~~~~vVl~g~g~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa 111 (272)
T 1hzd_A 38 KNLIKMLSKAVDALKSDK------KVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAA 111 (272)
T ss_dssp TTHHHHHHHHHHHHHHCS------SCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999998599------96499996278871135510001100120344566778999999999789989999
Q ss_pred ECCCC-C-CHHHHHHHCCCCCCCHH
Q ss_conf 05777-5-25898864123777214
Q gi|254780791|r 247 IGHET-D-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 247 IGHE~-D-~Tl~D~VAD~Ra~TPTa 269 (529)
|.--. - =.-.-+.+|+|..||++
T Consensus 112 v~G~a~GgG~~lal~~D~~ia~~~a 136 (272)
T 1hzd_A 112 IDGLALGGGLELALACDIRVAASSA 136 (272)
T ss_dssp ESEEEETHHHHHHHHSSEEEEETTC
T ss_pred ECCEECCCCCEEECCCCHHHHCCCC
T ss_conf 7880335775110030322306898
No 94
>3fdx_A Putative filament protein / universal stress protein F; structural genomics, APC60640.1, PSI-2, protein structure initiative; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=84.95 E-value=1 Score=24.59 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 01111036799999999741003576777589995168884442200769999999748904885
Q gi|254780791|r 181 VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 181 vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+.|. ...+|+...+.. ++|+||+++||++..+.+ |- -..-+-+..|++||+.
T Consensus 90 ~~G~-~~~~I~~~a~~~----------~~dliV~g~~~~~~~~~~-~G-S~~~~vl~~~~~pVlv 141 (143)
T 3fdx_A 90 AEGS-PKDKILALAKSL----------PADLVIIASHRPDITTYL-LG-SNAAAVVRHAECSVLV 141 (143)
T ss_dssp EESC-HHHHHHHHHHHT----------TCSEEEEESSCTTCCSCS-SC-HHHHHHHHHCSSEEEE
T ss_pred ECCC-HHHHHHHHHHHH----------CCCEEEECCCCCCCCCCE-EC-CHHHHHHHCCCCCEEE
T ss_conf 6288-789999999873----------454589735788877666-08-5999999639999999
No 95
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=84.95 E-value=2.1 Score=21.88 Aligned_cols=86 Identities=22% Similarity=0.338 Sum_probs=61.8
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 31026528999847842589999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
+.+..+.+|+||- =-+-.-|+|.|.+|. ++|.++|... .+.+| ... +||-|+|.=|=|
T Consensus 185 ~~~~~~~~VvviD---~GvK~nIlr~L~~rg-~~V~VvP~~~----~~~eI-------~~~-------~pDgi~lS~GPG 242 (379)
T 1a9x_B 185 KEDELPFHVVAYD---FGAKRNILRMLVDRG-CRLTIVPAQT----SAEDV-------LKM-------NPDGIFLSNGPG 242 (379)
T ss_dssp CGGGCCEEEEEEE---SSCCHHHHHHHHHTT-EEEEEEETTC----CHHHH-------HTT-------CCSEEEECCCSB
T ss_pred CCCCCCCEEEEEC---CCCCCCHHHHHHHCC-CEEEEECCCC----CHHHH-------HHC-------CCCEEEECCCCC
T ss_conf 3678873799975---674324899999789-9899989999----99999-------841-------999899669999
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEE--CCC
Q ss_conf 8444220076999999974890488520--577
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAI--GHE 250 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgI--GHE 250 (529)
..+++- ..-.+++.+.+.++||+ || ||+
T Consensus 243 ~P~~~~--~~i~~i~~~~~~~~Pil-GICLGhQ 272 (379)
T 1a9x_B 243 DPAPCD--YAITAIQKFLETDIPVF-GICLGHQ 272 (379)
T ss_dssp CSTTCH--HHHHHHHHHTTSCCCEE-EETHHHH
T ss_pred CCCHHH--HHHHHHHHHHHCCCCEE-EEEHHHH
T ss_conf 951556--89999999981699889-9747789
No 96
>3gjz_A Microcin immunity protein MCCF; niaid structural genomic centers for infectious diseases, csgid, immune system, structural genomics; 2.10A {Bacillus anthracis str}
Probab=84.84 E-value=2.1 Score=21.84 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=57.3
Q ss_pred CCCCCCC---EEEEEECCCHHHHHH------HHHHHHHCCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3102652---899984784258999------99986305975899972100111----1036799999999741003576
Q gi|254780791|r 140 PIPFIPK---IIAVITSPTGAVIRD------ILQRISCRFPLRVIIFPVKVQGD----ECPKEIANAILQLNTLKEGRTC 206 (529)
Q Consensus 140 ~lP~~p~---~i~vits~~~a~~~D------~~~~~~~r~p~~~~~~p~~vQG~----~a~~~i~~ai~~~~~~~~~~~~ 206 (529)
.+|..-+ +||||+..++....| .+..++. ++++|.+.+..-... +.+++=++.|..+- ..
T Consensus 5 ~~P~~Lk~GD~I~viAPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agt~~~Ra~dl~~a~------~d 77 (336)
T 3gjz_A 5 PLPKSLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQ-KGFHILEGSLTGRYDYYRSGSIQERAKELNALI------RN 77 (336)
T ss_dssp CCCCCCCTTCEEEEECSSCCHHHHCHHHHHHHHHHHHH-TTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHH------TC
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHH------HC
T ss_conf 88999998699999958986655499999999999986-899998775203346756799999999999985------48
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf 7775899951688844422007699999997489048852057775258988641
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529)
+.+|+|+-+|||-..-.|-.+=|+++.+ +-|-++ ||+. |.|.+=+.-.
T Consensus 78 ~~i~aI~~~rGG~g~~rlLp~LD~~~i~---~~PK~f---iGyS-DiTaL~~al~ 125 (336)
T 3gjz_A 78 PNVSCIMSTIGGMNSNSLLPYIDYDAFQ---NNPKIM---IGYS-DATALLLGIY 125 (336)
T ss_dssp TTEEEEEESCCCSCGGGGGGGCCHHHHH---HSCCEE---EECG-GGHHHHHHHH
T ss_pred CCCCEEEECCCCHHHHHHHHHCCHHHHH---HCCEEE---EECC-HHHHHHHHHH
T ss_conf 8889999877521199886543643573---188089---9650-6899999999
No 97
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=84.78 E-value=2 Score=22.04 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHHHHC--------------C--HHHHHHHHHHCCCEE
Q ss_conf 1103679999999974100357677758999516888-4---442200--------------7--699999997489048
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDLWHF--------------N--DEMIVRAIANSSIPI 243 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL~~F--------------N--~e~laraI~~~~iPV 243 (529)
...-.++..+++.+.... .+-+||| +|+|. + -||-.| . -..+...|.+||.||
T Consensus 34 ~~~~~el~~~l~~~~~d~------~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Pv 106 (715)
T 1wdk_A 34 RLTLNELRQAVDAIKADA------SVKGVIV-SSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPT 106 (715)
T ss_dssp HHHHHHHHHHHHHHHHCT------TCCEEEE-EESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred HHHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 999999999999997488------9769999-888997165809898963557886788876789999999998499989
Q ss_pred EEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf 8520-57775-25898864123777214
Q gi|254780791|r 244 ISAI-GHETD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 244 isgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529)
|++| ||-.- =.-+=+.+|.|..++++
T Consensus 107 IAai~G~a~GgG~elalacD~ria~~~a 134 (715)
T 1wdk_A 107 VAAINGIALGGGLEMCLAADFRVMADSA 134 (715)
T ss_dssp EEEECSCEETHHHHHHHTSSEEEEETTC
T ss_pred EEEECCHHHHHHHHHHHHCCEEEEECCC
T ss_conf 9997863329999999978999982998
No 98
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=84.52 E-value=2.1 Score=21.73 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH----HHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 9888888888986229999999999----974001718999997054356888627999874894799999735210586
Q gi|254780791|r 2 NPFSQKNSLDHPEYSVSELSYHLKH----IVESNLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE 77 (529)
Q Consensus 2 ~~~~~~~~~~~~~~svs~l~~~i~~----~l~~~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~ 77 (529)
+|+|.... .-.|..++...-.. .++..=..|.|.|=|.+.|. .++-++++|.|..+.|.||+-+.....-.
T Consensus 25 ~pyp~~~~---rth~~~el~~~~~~l~~~~~~~~~~~V~v~G~V~~~R~--~Gkl~Fi~LrD~~g~iQvv~~~~~~~~~~ 99 (493)
T 3a74_A 25 DPFGKRFE---RTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRG--MGKAGFAHIQDVTGQIQIYVRQDDVGEQQ 99 (493)
T ss_dssp CTTCCCCC---CSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEEEHHHHHHHH
T ss_pred CCCCCCCC---CCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHH
T ss_conf 99998886---87859999998623375432257978999998782867--99949999992986899999287467999
Q ss_pred ----CCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf ----681459889999996675288437999997101
Q gi|254780791|r 78 ----FLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP 110 (529)
Q Consensus 78 ----~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~ 110 (529)
....-|+-|.+.|.+. -.+.|.+.+.+..++.
T Consensus 100 ~~~~~~~~~~~~v~v~g~~~-~~~~g~~~i~~~~~~~ 135 (493)
T 3a74_A 100 YELFKISDLGDIVGVRGTMF-KTKVGELSIKVSSYEF 135 (493)
T ss_dssp HHHHHHCCTTCEEEEEEEEE-ECTTCCEEEEEEEEEE
T ss_pred HHHHHEEEEEEEEEEECEEE-CCCCCCCCCCCEEEEE
T ss_conf 95520455657998855471-2577653444127999
No 99
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=84.48 E-value=2.2 Score=21.71 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=83.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECC--CCEEEEEEECCCCCC---CCCCCC
Q ss_conf 88889862299999999999740-017189999970543568886279998748--947999997352105---866814
Q gi|254780791|r 8 NSLDHPEYSVSELSYHLKHIVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDN--HSRIDAIIWKGTLNK---IEFLPE 81 (529)
Q Consensus 8 ~~~~~~~~svs~l~~~i~~~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~--~a~i~~~~~~~~~~~---~~~~~~ 81 (529)
|++.+|. ..++...|+..++. ++ ++.|.. ..+. .+ .-.....+. ...++++++-..... +..--+
T Consensus 16 p~~~~~f--~~~l~~gi~~~a~~~g~-~l~v~~-~~~~--d~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~l~~ 86 (290)
T 3clk_A 16 SSVRTNF--AQQILDGIQEEAHKNGY-NLIIVY-SGSA--DP---EEQKHALLTAIERPVMGILLLSIALTDDNLQLLQS 86 (290)
T ss_dssp CCCSSSH--HHHHHHHHHHHHHTTTC-EEEEEC----------------CHHHHHHSSCCSEEEEESCC----CHHHHHC
T ss_pred CCCCCHH--HHHHHHHHHHHHHHCCC-EEEEEE-CCCC--CH---HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 9998789--99999999999998599-899996-8999--99---99999999998669878999713345599999986
Q ss_pred CCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHH--
Q ss_conf 598899999966752884379999971016800799999999997654012261001631026528999847842589--
Q gi|254780791|r 82 EGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVI-- 159 (529)
Q Consensus 82 ~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~-- 159 (529)
.|..|++.++. +++. +..+ ..+....|.+.. +.|.+.|. ++||+|+.+.....
T Consensus 87 ~~iPvV~i~~~--~~~~--~~~V--~~d~~~~g~~a~------~~l~~~G~-------------~~i~~i~~~~~~~~~~ 141 (290)
T 3clk_A 87 SDVPYCFLSMG--FDDD--RPFI--SSDDEDIGYQAT------NLLINEGH-------------RQIGIAGIDQYPYTGR 141 (290)
T ss_dssp C--CEEEESCC----CC--SCEE--ECCHHHHHHHHH------HHHHTTTC-------------CSEEEESCCCCTTTHH
T ss_pred CCCCEECCCCC--CCCC--CCEE--EECCHHHHHHHH------HHHHHCCC-------------CEEEEECCCCCCCHHH
T ss_conf 37863214666--6899--9989--967689999999------88986599-------------5699971775542267
Q ss_pred ---HHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf ---999998630597-5899972100111103679999999974100357677758999516888444220076999999
Q gi|254780791|r 160 ---RDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529)
Q Consensus 160 ---~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529)
.-|...+++.++ .. ......|..........++.+.. .+.+|+|+..- |. .-..++++
T Consensus 142 ~R~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ai~~~~------d~---~a~~~~~~ 203 (290)
T 3clk_A 142 KRLAGYKKALKEANIAIN---QEWIKPGDYSYTSGEQAMKAFGK------NTDLTGIIAAS------DM---TAIGILNQ 203 (290)
T ss_dssp HHHHHHHHHHHHTTCCCC---GGGEECCCSSHHHHHHHHHHHCT------TCCCSEEEESS------HH---HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHHHHHHHHC------CCCCEEECCCC------HH---HHHCHHHH
T ss_conf 777999999998599866---32245675156569999997522------33110441477------67---65343899
Q ss_pred HHHCCC--E---EEEEECCCCCCHHHHHH
Q ss_conf 974890--4---88520577752589886
Q gi|254780791|r 236 IANSSI--P---IISAIGHETDWTLADYA 259 (529)
Q Consensus 236 I~~~~i--P---VisgIGHE~D~Tl~D~V 259 (529)
+....+ | .|.|.+ |..++++.
T Consensus 204 l~~~gl~iP~dv~vi~~d---~~~~~~~~ 229 (290)
T 3clk_A 204 ASSFGIEVPKDLSIVSID---GTEMCKIT 229 (290)
T ss_dssp HHHTTCCTTTTCEEEEEE---CCTHHHHS
T ss_pred HHHHHCCCCCCCHHCCCC---CHHHHHHC
T ss_conf 987405686310001558---76899832
No 100
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=84.40 E-value=2.2 Score=21.69 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHHHH------------C--CHHHHHHHHHHCCCEEEEEE
Q ss_conf 03679999999974100357677758999516888-4---44220------------0--76999999974890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDLWH------------F--NDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL~~------------F--N~e~laraI~~~~iPVisgI 247 (529)
-..++..++..++... .+-|||| +|+|- + -||-. | +-..+..++..||.|||++|
T Consensus 54 ~~~eL~~al~~~~~d~------~vrvvvl-~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 126 (286)
T 3myb_A 54 MLAALGEAFGTLAEDE------SVRAVVL-AASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARV 126 (286)
T ss_dssp HHHHHHHHHHHHHTCT------TCCEEEE-EECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999999999997489------9569999-56999713787889983467677888888777899999984999889998
Q ss_pred -CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf -577752-5898864123777214
Q gi|254780791|r 248 -GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
||-.=- .-.=+.+|+|..|+.+
T Consensus 127 ~G~a~GgG~~lalacD~ria~~~a 150 (286)
T 3myb_A 127 HGIATAAGCQLVAMCDLAVATRDA 150 (286)
T ss_dssp CSCEETHHHHHHHHSSEEEEETTC
T ss_pred CCEEEHHHHHHHHHCCEEEECCCC
T ss_conf 898752668898716668976998
No 101
>1e1o_A Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=84.19 E-value=2.2 Score=21.62 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHH----HHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC--
Q ss_conf 88888888898622999999999----997400171899999705435688862799987489479999973521058--
Q gi|254780791|r 3 PFSQKNSLDHPEYSVSELSYHLK----HIVESNLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI-- 76 (529)
Q Consensus 3 ~~~~~~~~~~~~~svs~l~~~i~----~~l~~~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~-- 76 (529)
|+|.+.. +-.|..++..... ..+|..=..|.|.|=|-+.|. + ++-+++.|.|..+.|.||+=+.....-
T Consensus 34 pyp~~~~---~th~~~~~~~~~~~~~~~~~e~~~~~V~v~GwV~~~R~-~-Gkl~Fi~lrD~~g~iQvv~~~~~~~~~~~ 108 (504)
T 1e1o_A 34 AFPNDFR---RDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRI-M-GKASFVTLQDVGGRIQLYVARDSLPEGVY 108 (504)
T ss_dssp SSCCCCC---CSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEE-E-TTEEEEEEEETTEEEEEEEETTTSSTTHH
T ss_pred CCCCCCC---CCCCHHHHHHHHHCCCCCCHHCCCCEEEEEEEEEEEEC-C-CCCEEEEEECCCEEEEEEEECCCCCHHHH
T ss_conf 9998795---87689999998624474203208988999988898986-8-99399999919848999996885828899
Q ss_pred ---CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECC
Q ss_conf ---668145988999999667528843799999710168
Q gi|254780791|r 77 ---EFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSG 112 (529)
Q Consensus 77 ---~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g 112 (529)
--....|+-|-+.|.+. ..+.|.+.+.+..++.-+
T Consensus 109 ~~~~~~l~~g~~v~~~g~~~-~~~~g~~ei~~~~~~il~ 146 (504)
T 1e1o_A 109 NDQFKKWDLGDIIGARGTLF-KTQTGELSIHCTELRLLT 146 (504)
T ss_dssp HHTGGGCCTTCEEEEEEEEE-ECTTCCEEEEEEEEEEEE
T ss_pred HHHHHHEECCCCCCCCCEEC-CCCCCCEEEEEEEEEEEE
T ss_conf 99865131132355255002-577852799987743420
No 102
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Bordetella parapertussis}
Probab=83.51 E-value=2.3 Score=21.40 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH------HHHHHC----------CHHHHHHHHHHCCCEEEEEE
Q ss_conf 11036799999999741003576777589995168884------442200----------76999999974890488520
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI------EDLWHF----------NDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~------eDL~~F----------N~e~laraI~~~~iPVisgI 247 (529)
.....++..+|+.++.. .+.+|||.=.|+++ .++... .-..+...|.+||.|||++|
T Consensus 33 ~~m~~el~~al~~~~~~-------~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav 105 (254)
T 3isa_A 33 AELVEALIDGVDAAHRE-------QVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALA 105 (254)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999997579-------95499997889971169870431011001245667899999999985899899967
Q ss_pred -CCCCC--CHHHHHHHCCCCCCCHH
Q ss_conf -57775--25898864123777214
Q gi|254780791|r 248 -GHETD--WTLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~D--~Tl~D~VAD~Ra~TPTa 269 (529)
||=.- ..|+ +.+|.|..+|++
T Consensus 106 ~G~a~GgG~~la-l~~D~ria~~~a 129 (254)
T 3isa_A 106 HGRNFGAGVDLF-AACKWRYCTPEA 129 (254)
T ss_dssp CSEEETHHHHHH-HHSSEEEECTTC
T ss_pred CCCEEECCCCCC-CCCCEEEECCCC
T ss_conf 971876476235-557768976543
No 103
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=83.03 E-value=2.4 Score=21.26 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHH-------HCCHHHHHHHHHHCCCEEEEEE-CCCCC-
Q ss_conf 036799999999741003576777589995168884----4422-------0076999999974890488520-57775-
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLW-------HFNDEMIVRAIANSSIPIISAI-GHETD- 252 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~-------~FN~e~laraI~~~~iPVisgI-GHE~D- 252 (529)
-..+|..++..+.... .+.+||| ||+|.. .|+. ......+.+.+..||.|||++| ||=.=
T Consensus 34 ~~~~l~~~l~~~~~d~------~v~~vVl-~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg 106 (255)
T 3p5m_A 34 MLEELSVHIRDAEADE------SVRAVLL-TGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGF 106 (255)
T ss_dssp HHHHHHHHHHHHHHCT------TCCEEEE-EESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETH
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEH
T ss_conf 9999999999997499------9279999-66676533577430122234312577999999819998999978988737
Q ss_pred CHHHHHHHCCCCCCCH
Q ss_conf 2589886412377721
Q gi|254780791|r 253 WTLADYAADLRAPTPT 268 (529)
Q Consensus 253 ~Tl~D~VAD~Ra~TPT 268 (529)
=.-.=+.+|.|..|+.
T Consensus 107 G~~lal~~D~ria~~~ 122 (255)
T 3p5m_A 107 GCSLALACDLVVAAPA 122 (255)
T ss_dssp HHHHHHHSSEEEECTT
T ss_pred HHHHHHHCCEEEECCC
T ss_conf 7899873788997899
No 104
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=82.89 E-value=2.5 Score=21.21 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHH----------HHC--CHHHHHHHHHHCCCEEEEEE
Q ss_conf 1103679999999974100357677758999516888-4---442----------200--76999999974890488520
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDL----------WHF--NDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL----------~~F--N~e~laraI~~~~iPVisgI 247 (529)
.....+|..+++.++... .+-| ||.+|+|- + .|| +.| .-..+..++..||.|||++|
T Consensus 29 ~~~~~~l~~~l~~~~~d~------~v~v-vvl~g~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav 101 (257)
T 2ej5_A 29 EQMNAEVTKALKQAGADP------NVRC-VVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAV 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHCT------TCCE-EEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHCC------CEEE-EEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999999999999996498------9089-999789988657776798642000135677666789998753699599997
Q ss_pred -CCCC--CCHHHHHHHCCCCCCCHH
Q ss_conf -5777--525898864123777214
Q gi|254780791|r 248 -GHET--DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~--D~Tl~D~VAD~Ra~TPTa 269 (529)
||=. =..|+ +.+|.|..++++
T Consensus 102 ~G~a~GgG~~la-l~~D~~ia~~~a 125 (257)
T 2ej5_A 102 NGAAAGAGMSLA-LACDFRLLSEKA 125 (257)
T ss_dssp CSEEETHHHHHH-HHSSEEEEETTC
T ss_pred CCEEEHHHHHHH-HHCCEEEECCCC
T ss_conf 884646889999-850689836887
No 105
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3}
Probab=82.79 E-value=2.5 Score=21.18 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHC-----------------CHHHHHHHHHHCCCEE
Q ss_conf 1036799999999741003576777589995168884----442200-----------------7699999997489048
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHF-----------------NDEMIVRAIANSSIPI 243 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~F-----------------N~e~laraI~~~~iPV 243 (529)
....+|..+|+.++... .+.+||| +|.|.. -||-.| .-..+.++|..||.||
T Consensus 44 ~~~~el~~al~~~~~d~------~v~~vVi-tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 116 (279)
T 3g64_A 44 EAYADLRDLLAELSRRR------AVRALVL-AGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPV 116 (279)
T ss_dssp HHHHHHHHHHHHHHHTT------CCSEEEE-EECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999996099------9579999-4798736812505754311210002455555555666667887199989
Q ss_pred EEEE-CCCC--CCHHHHHHHCCCCCCCHH
Q ss_conf 8520-5777--525898864123777214
Q gi|254780791|r 244 ISAI-GHET--DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 244 isgI-GHE~--D~Tl~D~VAD~Ra~TPTa 269 (529)
|.+| ||-. =..|+ +.+|+|..++++
T Consensus 117 Iaav~G~a~GgG~~la-l~cD~~ia~~~a 144 (279)
T 3g64_A 117 IAALHGVAAGAGAVLA-LAADFRVADPST 144 (279)
T ss_dssp EEEECSEEETHHHHHH-HHSSEEEECTTC
T ss_pred EEEECCEEEHHHHHHH-HHCCEEECCCCC
T ss_conf 9997896530328998-734676416456
No 106
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=82.56 E-value=2.5 Score=21.12 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 46777669999988877
Q gi|254780791|r 278 KEHLQSSLINLEARLNN 294 (529)
Q Consensus 278 ~~EL~~~L~~l~~RL~~ 294 (529)
--+|...|...+..+..
T Consensus 79 ~CeLqd~L~kqe~~lkk 95 (461)
T 3ghg_B 79 GCQLQEALLQQERPIRN 95 (461)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 25789999999987899
No 107
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=82.48 E-value=1.6 Score=22.80 Aligned_cols=88 Identities=20% Similarity=0.324 Sum_probs=50.7
Q ss_pred CCCEEEEEECCCHHH-HHHHH-HHHHHCCCEEEEEEECCCCCCCHH--HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 652899984784258-99999-986305975899972100111103--67999999997410035767775899951688
Q gi|254780791|r 144 IPKIIAVITSPTGAV-IRDIL-QRISCRFPLRVIIFPVKVQGDECP--KEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 144 ~p~~i~vits~~~a~-~~D~~-~~~~~r~p~~~~~~p~~vQG~~a~--~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
.++++.|||-++-.. |.|-+ ..+ ..+.+.++++|+ ||.+. ..+.+.++.+... ...+-| +||+=|||
T Consensus 25 ~~~k~~ivtD~~v~~l~~~~~~~~l-~~~~~~~~~i~~---gE~~Ks~~~~~~i~~~l~~~----~~~r~~-~viaiGGG 95 (343)
T 3clh_A 25 LKQKALIISDSIVAGLHLPYLLERL-KALEVRVCVIES---GEKYKNFHSLERILNNAFEM----QLNRHS-LMIALGGG 95 (343)
T ss_dssp CSSCEEEEEEHHHHTTTHHHHHTTE-ECSCEEEEEECS---SGGGCSHHHHHHHHHHHHHT----TCCTTC-EEEEEESH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH-HCCCCEEEEECC---CCCCCCHHHHHHHHHHHHHH----CCCCCC-EEEEECCC
T ss_conf 7997999989716788999999985-228948999899---85669999999999999981----899866-28982794
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 84442200769999999748904885
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.+-|+..| |-+.|.-.+|.|.
T Consensus 96 ~v~D~agf-----~As~y~RGi~~i~ 116 (343)
T 3clh_A 96 VISDMVGF-----ASSIYFRGIDFIN 116 (343)
T ss_dssp HHHHHHHH-----HHHHBTTCCEEEE
T ss_pred HHHHHHHH-----HHHHHCCCCEEEE
T ss_conf 47669999-----9998717913897
No 108
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=82.40 E-value=2 Score=21.98 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf 999999974890488520-57775-25898864123777214
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529)
..+.+++.+||.|||.+| ||=.= =.-.=+.+|.|..++++
T Consensus 86 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a 127 (261)
T 1ef8_A 86 RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTS 127 (261)
T ss_dssp HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred HHHHHHHHHCCCCEEEEECCEEEEEEEHHHHHHHHCCCCCCC
T ss_conf 999999997799889997748864010244534440000001
No 109
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=81.54 E-value=2.7 Score=20.83 Aligned_cols=17 Identities=47% Similarity=0.624 Sum_probs=8.8
Q ss_pred HHHHHHCCHHHHHHHHH
Q ss_conf 44422007699999997
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIA 237 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~ 237 (529)
++||-.||-+.++++++
T Consensus 342 v~DL~~f~~~~~v~~Ll 358 (359)
T 2og2_A 342 VEDLQPFDPEAFVNAIF 358 (359)
T ss_dssp GGGEEECCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 11164589999999970
No 110
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=81.43 E-value=1.1 Score=24.26 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=47.2
Q ss_pred CCEEEEEEE------CCCCCCCCCCEE-EEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECC-----CC
Q ss_conf 718999997------054356888627-999874894799999735210586681459889999-99667528-----84
Q gi|254780791|r 33 SHVCVRGEI------SGYRGIHSSGHA-YFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPG-----SS 99 (529)
Q Consensus 33 ~~~~v~gEi------s~~~~~~~sGH~-Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~-----~g 99 (529)
.+..|+|-| ..|+.....|.+ -|.|.|+.+.|+|++|+..+....-.++.|.=+.+. |+|.-..+ .+
T Consensus 15 ~~w~I~~RV~~k~~~~~~~~~~~~g~v~~~~l~De~G~I~~~~~~~~~~~~~~~L~~G~vy~i~~f~V~~a~~~y~~~~~ 94 (114)
T 1ynx_A 15 NVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTH 94 (114)
T ss_dssp CCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSS
T ss_pred CCEEEEEEEEEECCCEEEECCCCCCEEEEEEEECCCCCEEEEEECHHHCCHHHHEECCCEEEEECEEEEECCCCCCCCCC
T ss_conf 96799999988215603655899644999999918998999991212012131021587999933099967686014798
Q ss_pred EEEEEEE---EEEEC
Q ss_conf 3799999---71016
Q gi|254780791|r 100 KYQIIIE---SLIPS 111 (529)
Q Consensus 100 ~~ql~v~---~i~~~ 111 (529)
.|.+... .|+++
T Consensus 95 ~yeI~f~~~T~V~~~ 109 (114)
T 1ynx_A 95 PYELNLDRDTVIEEC 109 (114)
T ss_dssp CEEEEECSSCEEEES
T ss_pred CEEEEECCCCEEEEC
T ss_conf 789997798789988
No 111
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=81.27 E-value=2.4 Score=21.32 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC-H---HHHHHCC-------------------HHHHHHHHHHCCCE
Q ss_conf 03679999999974100357677758999516888-4---4422007-------------------69999999748904
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS-I---EDLWHFN-------------------DEMIVRAIANSSIP 242 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS-~---eDL~~FN-------------------~e~laraI~~~~iP 242 (529)
-..+|..++..+.... .+-+||| +|.|- + -||..|. -..+.+++..|+.|
T Consensus 34 ~~~~l~~~l~~~~~d~------~v~~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 106 (263)
T 3l3s_A 34 MIAALHDALRRAMGDD------HVHVLVI-HGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKP 106 (263)
T ss_dssp HHHHHHHHHHHHHTCT------TCCEEEE-ECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEE-ECCCCCEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999997588------9569999-78999858675202133444454200246789999999999999867998
Q ss_pred EEEEE-CCCCC--CHHHHHHHCCCCCCCHH
Q ss_conf 88520-57775--25898864123777214
Q gi|254780791|r 243 IISAI-GHETD--WTLADYAADLRAPTPTG 269 (529)
Q Consensus 243 VisgI-GHE~D--~Tl~D~VAD~Ra~TPTa 269 (529)
||.+| ||=.- .. +-+.+|+|..++.+
T Consensus 107 vIaav~G~a~GgG~~-lal~~D~ria~~~a 135 (263)
T 3l3s_A 107 TIALVEGIATAAGLQ-LMAACDLAYASPAA 135 (263)
T ss_dssp EEEEESSEEETHHHH-HHHHSSEEEECTTC
T ss_pred EEEEECCCEECCCHH-HHHCCCCCEECCCC
T ss_conf 899845807614163-45422332221024
No 112
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=81.16 E-value=2.4 Score=21.32 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCC-CHHHHHHHCCCCCCCH
Q ss_conf 999999974890488520-57775-2589886412377721
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETD-WTLADYAADLRAPTPT 268 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPT 268 (529)
..+.+.+..||.|||++| ||=.- =...=+.+|.|..|+.
T Consensus 84 ~~l~~~l~~~~~p~Ia~v~G~~~GgG~~lal~~D~ria~~~ 124 (232)
T 3ot6_A 84 STLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAG 124 (232)
T ss_dssp HHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECS
T ss_pred HHHHHHHHHCCCCEEEEEECCEECCCCHHHHHCCCHHHHHC
T ss_conf 99999997089977999806350662144551461345305
No 113
>2uuu_A Alkyldihydroxyacetonephosphate synthase; rhizomelic chondrodysplasia punctata, biosynthesis of phospholipids, flavoprotein; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=81.09 E-value=1.9 Score=22.27 Aligned_cols=20 Identities=5% Similarity=0.144 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCHHHHHCCC
Q ss_conf 99999988716967773146
Q gi|254780791|r 442 VSITTRILQSFAYKNTLKRG 461 (529)
Q Consensus 442 L~~l~~~L~slsP~~~L~RG 461 (529)
++.+.+.=+.++|.++|.-|
T Consensus 562 ~~~~r~iK~~~DP~gIlNPG 581 (584)
T 2uuu_A 562 INVYRSLKETIDPKDICNPR 581 (584)
T ss_dssp HHHHHHHHHHHCTTCCBSCC
T ss_pred HHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999984976378988
No 114
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=81.03 E-value=2.8 Score=20.69 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC-----CCCCCCCCCCEEEEEEEEEEECCCCEEE--EEE
Q ss_conf 718999997054356888627999874894799999735210-----5866814598899999966752884379--999
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLN-----KIEFLPEEGIEFLVIGKITTFPGSSKYQ--III 105 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~-----~~~~~~~~G~~v~~~g~~~~y~~~g~~q--l~v 105 (529)
..|.|.|=|.+.|. .++-++++|.|..+.|.|++-+.... .++ .+..|+-|.|.|.|. ..+.|... +.+
T Consensus 17 ~~V~v~GwV~~~R~--~g~l~Fi~LrD~~g~iQv~~~~~~~~~~~~~~~~-~l~~g~~v~v~G~v~-~~~~~~~~iei~~ 92 (438)
T 3nem_A 17 QKVKVAGWVWEVKD--LGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIP-KLRSEDVVAVEGVVN-FTPKAKLGFEILP 92 (438)
T ss_dssp CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGG-GCCTTCEEEEEEEEE-ECTTSTTSEEEEE
T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHHH-CCCCCEEEEEEEEEE-ECCCCCCEEEEEE
T ss_conf 99999999881884--7980999999598639999958979999999982-899834999996999-2799973089976
Q ss_pred EEE
Q ss_conf 971
Q gi|254780791|r 106 ESL 108 (529)
Q Consensus 106 ~~i 108 (529)
..+
T Consensus 93 ~~~ 95 (438)
T 3nem_A 93 EKI 95 (438)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 556
No 115
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=80.93 E-value=2.8 Score=20.67 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=47.8
Q ss_pred EEEEEEECCCCCCC-C-C-C-EEE--EEEECCC---C--EEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEE
Q ss_conf 89999970543568-8-8-6-279--9987489---4--799999735210586681459889999-9966752884379
Q gi|254780791|r 35 VCVRGEISGYRGIH-S-S-G-HAY--FSLKDNH---S--RIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQ 102 (529)
Q Consensus 35 ~~v~gEis~~~~~~-~-s-G-H~Y--f~lkd~~---a--~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~q 102 (529)
|=|.|-|..|+... + + | +|+ |+|.|.. + .+.|.+|+.....|+.-.+.||=|+++ .++..|. |..|
T Consensus 45 VNviGVV~~~~~P~~Sk~G~kDy~~tl~I~D~S~~~~~~gL~v~iF~~~~e~LP~V~~vGDIIlLrrvkvq~~n--g~~q 122 (187)
T 1qzg_A 45 VNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQPLLLHQITLRSYR--DRTQ 122 (187)
T ss_dssp EEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTCEEEEEEEEEEEET--TEEE
T ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEEC--CEEE
T ss_conf 88999980036970277899867999999859988888867999989996788998999989999778999998--9478
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780791|r 103 IIIE 106 (529)
Q Consensus 103 l~v~ 106 (529)
.+-.
T Consensus 123 gvs~ 126 (187)
T 1qzg_A 123 GLSK 126 (187)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 9962
No 116
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=80.75 E-value=2.9 Score=20.62 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=49.1
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 28999847-842589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
+.||||.+ -+-.-+.+++..+.+ ..++.+.++++. .-+....++++.+... .+|.+|+.=..
T Consensus 17 ~tIGvivp~l~~~f~~~l~~~i~~~~~~~gy~~~l~~~~----~~~~~~~~~~~~l~~~-------~vdgiIi~~~~--- 82 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSD----QNMEKELHLLNTMLGK-------QVDGIVFMGGN--- 82 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT----TCHHHHHHHHHHHHHT-------TCSEEEECCSC---
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----CCHHHHHHHHHHHHHC-------CCCEEEEEECC---
T ss_conf 999999687889899999999999999869989999689----9979999999999963-------98747996315---
Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
Q ss_conf 4422007699999997489048852057775258988
Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADY 258 (529)
Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~ 258 (529)
.++ ..+..+.+..+||++ ||...+-.-+++
T Consensus 83 -----~~~-~~~~~l~~~~~~vv~-~~~~~~~~~~~~ 112 (289)
T 2fep_A 83 -----ITD-EHVAEFKRSPVPIVL-AASVEEQEETPS 112 (289)
T ss_dssp -----CCH-HHHHHHHHSSSCEEE-ESCCCTTCCSCE
T ss_pred -----CCH-HHHHHHHHCCCCEEE-EECCCCCCCCCE
T ss_conf -----887-999999864997899-613467898998
No 117
>2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=80.68 E-value=2.9 Score=20.60 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHC------C-----------HHHHHHHHHHCCC
Q ss_conf 111036799999999741003576777589995168884----442200------7-----------6999999974890
Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHF------N-----------DEMIVRAIANSSI 241 (529)
Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~F------N-----------~e~laraI~~~~i 241 (529)
......++..+|+.++.. ..-+| |.+|.|-. -||-.| + -..+..++..||.
T Consensus 49 ~~~~~~eL~~al~~~~~d-------~~~~v-Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 120 (291)
T 2fbm_A 49 NTEVIKEIVNALNSAAAD-------DSKLV-LFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKK 120 (291)
T ss_dssp CHHHHHHHHHHHHHHHHS-------SCSEE-EEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHHHHC-------CCEEE-EEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999998739-------98799-9978899567488755453222232102379999999999999986799
Q ss_pred EEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 488520-577752-5898864123777214
Q gi|254780791|r 242 PIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 242 PVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
|||.+| ||=.-- ...=+.+|+|..++++
T Consensus 121 PvIAav~G~a~GgG~~lal~cD~ria~~~a 150 (291)
T 2fbm_A 121 PIVVSVNGPAIGLGASILPLCDLVWANEKA 150 (291)
T ss_dssp CEEEEECSCEETHHHHTGGGSSEEEEETTC
T ss_pred CEEEEECCEECCCCCCEEECCCEECCCHHH
T ss_conf 899997991031887300235653014433
No 118
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1}
Probab=80.38 E-value=2.9 Score=20.53 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHCCCEEEEEE-CCC--CCCHHHHHHHCCCCCCCHH
Q ss_conf 76999999974890488520-577--7525898864123777214
Q gi|254780791|r 228 NDEMIVRAIANSSIPIISAI-GHE--TDWTLADYAADLRAPTPTG 269 (529)
Q Consensus 228 N~e~laraI~~~~iPVisgI-GHE--~D~Tl~D~VAD~Ra~TPTa 269 (529)
..+.+...|..||.|||++| ||= --..|+ +.+|+|..||++
T Consensus 130 ~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~la-l~~D~riate~a 173 (407)
T 3ju1_A 130 EEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLM-AGASHKVVTETS 173 (407)
T ss_dssp HHHHHHHHHHTCSSCEEEECCSEEETHHHHHH-HHCSEEEECTTC
T ss_pred HHHHHHHHHHHCCCCEEEEECCEEECCCCCCC-CCCCCCCCCCCC
T ss_conf 88899999985599389997670204552000-245646558987
No 119
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435}
Probab=80.22 E-value=3 Score=20.49 Aligned_cols=87 Identities=14% Similarity=0.162 Sum_probs=44.8
Q ss_pred CEEEEEECCC------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 2899984784------2589999998630---597589997210011110367999999997410035767775899951
Q gi|254780791|r 146 KIIAVITSPT------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 146 ~~i~vits~~------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
.+||||.+.. .--+.+++..+.+ ..++++.++++.-. +......++.+... .+|.||+.
T Consensus 23 ~~Igli~~~~~~~~~~~pf~~~~~~~i~~~~~~~g~~~~l~~~~~~----~~~~~~~~~~l~~~-------~vdgiIi~- 90 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENS----GDLYHEVKTMIQSK-------SVDGFILL- 90 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSH----HHHHHHHHHHHHTT-------CCSEEEES-
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHC-------CCCEEEEC-
T ss_conf 9799996776532237989999999999999975998999957886----68999999999847-------87549833-
Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 6888444220076999999974890488520577752
Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529)
Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529)
|. ..++.+.+.+-...+|++. +|.+.+.
T Consensus 91 ~~--------~~~~~~~~~l~~~~ip~v~-~~~~~~~ 118 (305)
T 3huu_A 91 YS--------LKDDPIEHLLNEFKVPYLI-VGKSLNY 118 (305)
T ss_dssp SC--------BTTCHHHHHHHHTTCCEEE-ESCCCSS
T ss_pred CC--------CCCHHHHHHHHHCCCCEEE-ECCCCCC
T ss_conf 77--------7876899999864998899-8155456
No 120
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=80.17 E-value=2 Score=21.94 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=36.1
Q ss_pred CCCEEEEECCCC-C---HHHHHHCC--------HHHHHHHHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 775899951688-8---44422007--------6999999974890488520-577752-5898864123777214
Q gi|254780791|r 208 RPDIIILARGGG-S---IEDLWHFN--------DEMIVRAIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 208 ~~D~iii~RGGG-S---~eDL~~FN--------~e~laraI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
.+-+||| +|.| + -.||..++ -..+.++|..||.|||++| ||=.-- .-.=+.+|.|..+|++
T Consensus 64 ~vr~vVl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a 138 (264)
T 3he2_A 64 SARAIVL-TGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDA 138 (264)
T ss_dssp CCSEEEE-EESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTC
T ss_pred CCEEEEE-ECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEEECCC
T ss_conf 9559999-68998513454543444301035899999999985899899997785644889999844666520344
No 121
>3g23_A Peptidase U61, LD-carboxypeptidase A; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Novosphingobium aromaticivorans DSM12444}
Probab=79.82 E-value=3 Score=20.39 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=36.2
Q ss_pred CCEEEEEECCCHHHHHHHHH--HH--HHCCCEEEEEEECCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 52899984784258999999--86--305975899972100--1111036799999999741003576777589995168
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQ--RI--SCRFPLRVIIFPVKV--QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~--~~--~~r~p~~~~~~p~~v--QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529)
-+|||||+..+..--.++-. -+ .+.|.+++.+.|..- .|--|...=.+|=+.-+.+ ..+.+|+|+-+|||
T Consensus 3 ~~rI~iiAPss~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~ag~d~~Ra~dl~~a~----~d~~i~aI~~~rGG 78 (274)
T 3g23_A 3 TRRIAICAPSTPFTREDSARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECA----NDDAFEAVWFVRGG 78 (274)
T ss_dssp CEEEEEECSSSCCCHHHHHHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHH----TCTTCSEEEESCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHHH----HCCCCCEEEECCCC
T ss_conf 66799994899998778899999999971994798883302105860799899999999876----55898899993663
Q ss_pred CCHHHHHHC
Q ss_conf 884442200
Q gi|254780791|r 219 GSIEDLWHF 227 (529)
Q Consensus 219 GS~eDL~~F 227 (529)
-..-.|-.+
T Consensus 79 ~ga~rlL~~ 87 (274)
T 3g23_A 79 YGANRIAED 87 (274)
T ss_dssp SCTHHHHHH
T ss_pred CCHHHHHHH
T ss_conf 258888887
No 122
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=78.74 E-value=3.2 Score=20.13 Aligned_cols=80 Identities=20% Similarity=0.283 Sum_probs=47.1
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 26528999847842589999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
.+.+||-||-.. ..+..+++..=+.++++|......- .|++.+... .||+||+
T Consensus 3 ~M~kkILvVdDd--~~~~~~l~~~L~~~g~~v~~a~~~~----------~al~~l~~~-------~pdliil-------- 55 (127)
T 2gkg_A 3 HMSKKILIVESD--TALSATLRSALEGRGFTVDETTDGK----------GSVEQIRRD-------RPDLVVL-------- 55 (127)
T ss_dssp ---CEEEEECSC--HHHHHHHHHHHHHHTCEEEEECCHH----------HHHHHHHHH-------CCSEEEE--------
T ss_pred CCCCCEEEEECC--HHHHHHHHHHHHHCCCEEEEECCHH----------HHHHHHHHC-------CCCEEEE--------
T ss_conf 558859999899--9999999999998799999989999----------999999847-------9999999--------
Q ss_pred HH--HH-CCHHHHHHHHHH----CCCEEEEEECCC
Q ss_conf 42--20-076999999974----890488520577
Q gi|254780791|r 223 DL--WH-FNDEMIVRAIAN----SSIPIISAIGHE 250 (529)
Q Consensus 223 DL--~~-FN~e~laraI~~----~~iPVisgIGHE 250 (529)
|+ .. -|-.++++.|-+ ..+|||- ++..
T Consensus 56 D~~lp~~~~G~~l~~~ir~~~~~~~iPii~-lt~~ 89 (127)
T 2gkg_A 56 AVDLSAGQNGYLICGKLKKDDDLKNVPIVI-IGNP 89 (127)
T ss_dssp ESBCGGGCBHHHHHHHHHHSTTTTTSCEEE-EECG
T ss_pred ECCCCCCCCHHHHHHHHHHCCCCCCCCEEE-EECC
T ss_conf 757776888999999998388889983899-9689
No 123
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=78.66 E-value=3.3 Score=20.11 Aligned_cols=109 Identities=18% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEE----------------ECCCCC----------------CCHH
Q ss_conf 6528999847-842589999998630---597589997----------------210011----------------1103
Q gi|254780791|r 144 IPKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIF----------------PVKVQG----------------DECP 187 (529)
Q Consensus 144 ~p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~----------------p~~vQG----------------~~a~ 187 (529)
+.|||||+|| -.+.++...++-+-+ +.+.+|+-+ +..|.+ -...
T Consensus 1 m~krIgIltsGG~~pG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~lgtsR~~~~~~~ 80 (320)
T 1pfk_A 1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320)
T ss_dssp CCCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCCH
T ss_conf 98649998658886778999999999998779999999166788727986868999997798579972247788866657
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf 67999999997410035767775899951688844422007699999997489048852057775258988641237772
Q gi|254780791|r 188 KEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267 (529)
Q Consensus 188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP 267 (529)
....++++.+...+ .|.+|++=|.||.... ..+.+..+|| .||-.-+|--|. -.|...=..
T Consensus 81 ~~~~~~~~~l~~~~-------Id~li~iGGdgs~~~a---------~~l~e~~~~v-igIPkTIDNDl~--~td~s~Gf~ 141 (320)
T 1pfk_A 81 NIRAVAIENLKKRG-------IDALVVIGGDGSYMGA---------MRLTEMGFPC-IGLPGTIDNDIK--GTDYTIGFF 141 (320)
T ss_dssp HHHHHHHHHHHHTT-------CCEEEEEECHHHHHHH---------HHHHHTTCCE-EEEEBCTTCCCT--TCSCCBTHH
T ss_pred HHHHHHHHHHHHCC-------CCEEEEECCCHHHHHH---------HHHHHCCCCE-EEEEEEECCCCC--CCCCCCCHH
T ss_conf 78889999999769-------9889993693689999---------9976436743-312112227998--853388378
Q ss_pred HHHH
Q ss_conf 1456
Q gi|254780791|r 268 TGAA 271 (529)
Q Consensus 268 TaAA 271 (529)
||+.
T Consensus 142 TA~~ 145 (320)
T 1pfk_A 142 TALS 145 (320)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 8899
No 124
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=78.54 E-value=3.3 Score=20.09 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=67.9
Q ss_pred HCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 12261001631026528999847842589999998630597-58999721001111036799999999741003576777
Q gi|254780791|r 131 GLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529)
Q Consensus 131 Glfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529)
.=||+..-.. . .+||...+....-+-.++..+.+++| +++.+.+.. ..++.++|.. .++
T Consensus 10 ~~FdP~~~~~--~--~rI~~~~~~~~~~lp~ll~~l~~~~P~v~i~l~~~~------~~~~~~~L~~----------g~i 69 (241)
T 3oxn_A 10 VEFDPQQCDQ--T--FTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQ------HDRLSDQLTY----------EGA 69 (241)
T ss_dssp ----CCSCCC--E--EEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECC------GGGHHHHHHT----------SCC
T ss_pred CCCCCCCCCC--E--EEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECC------HHHHHHHHHC----------CCC
T ss_conf 9989200686--8--999973799999999999999998869289999798------7999999975----------985
Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC---CCCHHHHHHHC
Q ss_conf 58999516888444220076999999974890488520577---75258988641
Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE---TDWTLADYAAD 261 (529)
Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE---~D~Tl~D~VAD 261 (529)
|+.| +.+.....++. ++.++.-+.-++..-+|- ...|+.|+...
T Consensus 70 Dl~I-~~~~~~~~~l~-------~~~l~~~~~v~v~~~~HPl~~~~~t~~dl~~~ 116 (241)
T 3oxn_A 70 DLAI-CRPTGPVEPLR-------SEILGRVGVLCLLSKQHPLANQEMSLDDYLSH 116 (241)
T ss_dssp SEEE-ECCSSCCTTEE-------EEEEECCCEEEEEETTSGGGGSCCCHHHHHTS
T ss_pred CEEE-ECCCCCCCCCC-------CCCCCCCCCEEECCCCCHHHHCCCCHHHHHHC
T ss_conf 4222-02678741011-------35432236402237665032025889999529
No 125
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=78.51 E-value=3.3 Score=20.08 Aligned_cols=17 Identities=47% Similarity=0.624 Sum_probs=9.9
Q ss_pred HHHHHHCCHHHHHHHHH
Q ss_conf 44422007699999997
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIA 237 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~ 237 (529)
++||-.||-+.+++.|+
T Consensus 285 v~Dl~~f~~~~~~~~ll 301 (302)
T 3b9q_A 285 VEDLQPFDPEAFVNAIF 301 (302)
T ss_dssp GGGEEECCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHC
T ss_conf 40365589999999971
No 126
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=78.44 E-value=1 Score=24.50 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH----HHHHHCC-----------HHHHHHHHHHCCCEEEEEE-CCC
Q ss_conf 36799999999741003576777589995168884----4422007-----------6999999974890488520-577
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI----EDLWHFN-----------DEMIVRAIANSSIPIISAI-GHE 250 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~----eDL~~FN-----------~e~laraI~~~~iPVisgI-GHE 250 (529)
..++..+++.+.... .+.+||| +|+|-. -||-.|. -..+.+.+..||.|||++| ||=
T Consensus 36 ~~~L~~~l~~~~~d~------~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaai~G~a 108 (260)
T 1mj3_A 36 IEELNQALETFEEDP------AVGAIVL-TGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA 108 (260)
T ss_dssp HHHHHHHHHHHHHCT------TCCEEEE-ECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEE
T ss_pred HHHHHHHHHHHHHCC------CEEEEEE-ECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEE
T ss_conf 999999999998589------9079999-779995327876565323531456788999999885259982999988756
Q ss_pred CCC-HHHHHHHCCCCCCCHH
Q ss_conf 752-5898864123777214
Q gi|254780791|r 251 TDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 251 ~D~-Tl~D~VAD~Ra~TPTa 269 (529)
.=- ...=+.+|.|..+|++
T Consensus 109 ~GgG~~lal~cD~~ia~~~a 128 (260)
T 1mj3_A 109 LGGGCELAMMCDIIYAGEKA 128 (260)
T ss_dssp ETHHHHHHHHSSEEEEETTC
T ss_pred EHHHHHHHHHCCEEEECCCC
T ss_conf 19999999978999976998
No 127
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=78.09 E-value=3.2 Score=20.23 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=3.9
Q ss_pred CCCEEEEEEE
Q ss_conf 5988999999
Q gi|254780791|r 82 EGIEFLVIGK 91 (529)
Q Consensus 82 ~G~~v~~~g~ 91 (529)
+-+-|++.|.
T Consensus 48 ~~dglii~Gg 57 (250)
T 3m3p_A 48 DCSGLAMMGG 57 (250)
T ss_dssp GSSEEEECCC
T ss_pred HCCEEEECCC
T ss_conf 3898999099
No 128
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=77.73 E-value=3.4 Score=19.90 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=49.0
Q ss_pred EEEEEEECCCCCC-CCCC---EEEEEEECCC-CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEEE
Q ss_conf 8999997054356-8886---2799987489-4799999735210586681459889999-996675288437999997
Q gi|254780791|r 35 VCVRGEISGYRGI-HSSG---HAYFSLKDNH-SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIES 107 (529)
Q Consensus 35 ~~v~gEis~~~~~-~~sG---H~Yf~lkd~~-a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~~ 107 (529)
|-|.|-|.+++.. ++.| .+-|+|+|+. ..|+|.+|+.+...|+.-.+.||=|++. .++..| +|..+++...
T Consensus 18 Vnv~GVV~d~~~p~~s~GtD~~~tl~I~D~S~~gl~v~iF~~~~~~LP~v~~vGDII~l~~vki~~~--~g~~~~v~~~ 94 (294)
T 1xjv_A 18 VNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVY--KKETQGITSS 94 (294)
T ss_dssp EEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSGGGSCCCCSTTCEEEEEEEEEEEE--TTEEEEEEEE
T ss_pred EEEEEEEEECCCCEECCCCEEEEEEEEECCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE--CCCEEEEECC
T ss_conf 8999999765687207996499999998389998189997899677998678898999977899998--8926788249
No 129
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=77.54 E-value=3.5 Score=19.86 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67776699999888
Q gi|254780791|r 279 EHLQSSLINLEARL 292 (529)
Q Consensus 279 ~EL~~~L~~l~~RL 292 (529)
.++...|......+
T Consensus 23 ceLqd~L~kq~~el 36 (411)
T 3ghg_C 23 CGIADFLSTYQTKV 36 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 26899999999999
No 130
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=77.31 E-value=1.9 Score=22.12 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=6.7
Q ss_pred CCEEEEEECCCHHHHH
Q ss_conf 5289998478425899
Q gi|254780791|r 145 PKIIAVITSPTGAVIR 160 (529)
Q Consensus 145 p~~i~vits~~~a~~~ 160 (529)
.+||||+|.=....-.
T Consensus 117 ~krIav~tPY~~~~~~ 132 (240)
T 3ixl_A 117 VRRVALATAYIDDVNE 132 (240)
T ss_dssp CSEEEEEESSCHHHHH
T ss_pred CCCEEECCCCHHHHHH
T ss_conf 9864543676489999
No 131
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=77.16 E-value=3.5 Score=19.78 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=54.4
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCC-------CCCCCCCEEEEEEEEEEECCC-------
Q ss_conf 718999997054356888627999874894799999735210586-------681459889999996675288-------
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIE-------FLPEEGIEFLVIGKITTFPGS------- 98 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~-------~~~~~G~~v~~~g~~~~y~~~------- 98 (529)
..|.|.|=|.+.|. +.+.=++++|.|....|.||+=........ -.+..|+-|.|.|.+. -.++
T Consensus 37 ~~V~v~G~V~~~R~-~Gk~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~-~~~~~~~~~~~ 114 (487)
T 1eov_A 37 KEVLFRARVHNTRQ-QGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVK-KVDEPIKSATV 114 (487)
T ss_dssp CEEEEEEEEEEEEE-CSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEE-ECSSCCTTSSE
T ss_pred CEEEEEEEEECCCC-CCCCCEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEEEEEEEEE-ECCCCCCCCCC
T ss_conf 89999998811014-89988889998698879999978866642799999970899854999998999-47888778986
Q ss_pred CEEEEEEEEEEE
Q ss_conf 437999997101
Q gi|254780791|r 99 SKYQIIIESLIP 110 (529)
Q Consensus 99 g~~ql~v~~i~~ 110 (529)
|.+.+.++.+..
T Consensus 115 ~~~ei~~~~i~~ 126 (487)
T 1eov_A 115 QNLEIHITKIYT 126 (487)
T ss_dssp EEEEEEEEEEEE
T ss_pred CEEEEEEEEEEE
T ss_conf 339999999999
No 132
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H
Probab=76.89 E-value=1 Score=24.63 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=53.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
.|-||+||+++. +..-.+ -.+++ .|++ ..+.++.++++.+-+.. .+-+|+| .|+
T Consensus 2 ~~mki~VIGd~d------~v~GF~-L~Gi~--~~~~-----~~~ee~~~~~~~l~~~~------d~giI~I------te~ 55 (109)
T 2d00_A 2 VPVRMAVIADPE------TAQGFR-LAGLE--GYGA-----SSAEEAQSLLETLVERG------GYALVAV------DEA 55 (109)
T ss_dssp CCCCEEEEECHH------HHHHHH-HTTSE--EEEC-----SSHHHHHHHHHHHHHHC------CCSEEEE------ETT
T ss_pred CCEEEEEECCHH------HHHHHH-HHCEE--EEEC-----CCHHHHHHHHHHHHHCC------CEEEEEE------CHH
T ss_conf 735999983789------877877-40505--5866-----99899999999998489------8599998------189
Q ss_pred HHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 220076999999974890488520
Q gi|254780791|r 224 LWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 224 L~~FN~e~laraI~~~~iPVisgI 247 (529)
++.--.+.+-+...++.+|+|.-|
T Consensus 56 ~~~~i~~~i~~~~~~~~~P~Ii~I 79 (109)
T 2d00_A 56 LLPDPERAVERLMRGRDLPVLLPI 79 (109)
T ss_dssp TCSCHHHHHHHHTTCCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 987659999999846998589997
No 133
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1}
Probab=76.66 E-value=3.6 Score=19.68 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCEEEEEECCCHHHHHH----HHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 52899984784258999----999863059-7589997210011110367999999997410035767775899951688
Q gi|254780791|r 145 PKIIAVITSPTGAVIRD----ILQRISCRF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 145 p~~i~vits~~~a~~~D----~~~~~~~r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
.++|++|+.+.+....+ |+..+.+.. +..... +.+.........+++.+-... +.+|+|+
T Consensus 126 ~~~i~~i~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~-----~~~~ai~------ 190 (289)
T 3k9c_A 126 HRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASATV----VTGGTTETEGAEGMHTLLEMP-----TPPTAVV------ 190 (289)
T ss_dssp CCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEE----ECCCSSHHHHHHHHHHHHTSS-----SCCSEEE------
T ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE----ECCCCCHHHHHHHHHHHHHHC-----CCCCCCC------
T ss_conf 8741442587663157788877789998199977221----115565677999999999734-----5866012------
Q ss_pred CHHHHHHCCHHH---HHHHHHHCC
Q ss_conf 844422007699---999997489
Q gi|254780791|r 220 SIEDLWHFNDEM---IVRAIANSS 240 (529)
Q Consensus 220 S~eDL~~FN~e~---laraI~~~~ 240 (529)
|.||+. +.+++.+..
T Consensus 191 ------~~~d~~A~g~~~~l~~~g 208 (289)
T 3k9c_A 191 ------AFNDRCATGVLDLLVRSG 208 (289)
T ss_dssp ------ESSHHHHHHHHHHHHHTT
T ss_pred ------CCHHHHHHHHHHHHHHCC
T ss_conf ------145899999999999859
No 134
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=76.27 E-value=3.7 Score=19.61 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 84258999999863059758999721001111036799999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAI 194 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai 194 (529)
++-+.+-++.+.+.+.-+..+++|.+++ ....+++..|
T Consensus 120 ~~~~~i~~~f~~ia~~~~~Pi~iY~~p~---~~~~~~l~~L 157 (314)
T 3d0c_A 120 ITDAGAVEYYRNIIEALDAPSIIYFKDA---HLSDDVIKEL 157 (314)
T ss_dssp CCHHHHHHHHHHHHHHSSSCEEEEECCT---TSCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECC---CCCCHHHHHH
T ss_conf 7679999999999750479857774144---5543699997
No 135
>3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A
Probab=75.85 E-value=3.8 Score=19.51 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC---CC--CCCHHHH
Q ss_conf 103679999999974100357677758999--5168884442200769999999748904885205---77--7525898
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIIL--ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG---HE--TDWTLAD 257 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii--~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG---HE--~D~Tl~D 257 (529)
.....|.++|+.+... ++++|+| ==.|||.. -.+.++.+|..++.||++=|. .. .-=+++=
T Consensus 22 ~~~~~i~~~l~~a~~~-------~~kaivL~IdSPGG~v~-----~~~~I~~~i~~~~~~v~~~v~~~~~~AaS~g~~ia 89 (230)
T 3bpp_A 22 YTYDQFDRYITIAEQD-------NAEAIIIELDTPGGRAD-----AMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIA 89 (230)
T ss_dssp HHHHHHHHHHHHHHHT-------TCSEEEEEEEBSCBCHH-----HHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-------CCCEEEEEEECCCCCHH-----HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 9999999999999768-------99869999859881899-----99999999860467885799973446777789988
Q ss_pred HHHCCCCCCCHHH
Q ss_conf 8641237772145
Q gi|254780791|r 258 YAADLRAPTPTGA 270 (529)
Q Consensus 258 ~VAD~Ra~TPTaA 270 (529)
..+|.++.+|++-
T Consensus 90 ~a~d~i~~~p~s~ 102 (230)
T 3bpp_A 90 LGSHLIAMAPGTS 102 (230)
T ss_dssp HTSSEEEECTTCE
T ss_pred HCCCEEEECCCCC
T ss_conf 5089899789981
No 136
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=75.52 E-value=3.9 Score=19.44 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=7.9
Q ss_pred HHHHHCCHHHHHHHHHH
Q ss_conf 44220076999999974
Q gi|254780791|r 222 EDLWHFNDEMIVRAIAN 238 (529)
Q Consensus 222 eDL~~FN~e~laraI~~ 238 (529)
+||-.||-+.+++++..
T Consensus 284 ~Dl~~f~~~~~v~~lLg 300 (309)
T 2qy9_A 284 EDLRPFKADDFIEALFA 300 (309)
T ss_dssp GGEEECCHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHC
T ss_conf 13642899999999837
No 137
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12}
Probab=74.34 E-value=4 Score=19.32 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCC
Q ss_conf 77758999516888444220076999999974890488520577752589886412377
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAP 265 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~ 265 (529)
.+.|+||+. ||+-.+-...-- ++.+.-. .|+=+.+|+||-|...-.-...+-+..
T Consensus 35 ~~aD~IVvl-G~~~l~~~~~A~--~L~~~g~-a~liisGG~G~~T~~l~~~i~~~~~~~ 89 (266)
T 3ca8_A 35 YQADCVILA-GNAVMPTIDAAC--KIARDQQ-IPLLISGGIGHSTTFLYSAIAQHPHYN 89 (266)
T ss_dssp CCCSEEEEE-SCCCHHHHHHHH--HHHHHHT-CCEEEECCSSTTHHHHHHHHHTCTTGG
T ss_pred CCCCEEEEC-CCCCHHHHHHHH--HHHHCCC-CCEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 899989988-998218999999--9998059-988973698755314565543065445
No 138
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=74.25 E-value=1.9 Score=22.30 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=39.2
Q ss_pred CCEEEEEEEC------CCCCCCCCCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEE
Q ss_conf 7189999970------5435688862-7999874894799999735210586681459889999-9966
Q gi|254780791|r 33 SHVCVRGEIS------GYRGIHSSGH-AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKIT 93 (529)
Q Consensus 33 ~~~~v~gEis------~~~~~~~sGH-~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~ 93 (529)
.++.|+|=|. .|......|+ +.+.|.|+.+.|+|++|........-.+++|.=+.+. ++|.
T Consensus 19 ~~~~I~~rV~~k~~~r~f~~~~~~~~v~~~~l~D~~G~I~~~~~~~~~~~~~~~l~eG~vy~i~~~~V~ 87 (246)
T 1jmc_A 19 SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLK 87 (246)
T ss_dssp CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEEEEECCEEE
T ss_pred CCEEEEEEEEEECCCEEEECCCCCEEEEEEEEECCCCCEEEEECCCCHHHHHHHCCCCCEEEECCCEEE
T ss_conf 868999999971353587669996389999998799979999755430100001004639998887899
No 139
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12}
Probab=73.29 E-value=4.3 Score=19.02 Aligned_cols=90 Identities=18% Similarity=0.177 Sum_probs=50.4
Q ss_pred CEEEEEECC---CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 289998478---42589999998630---597589997210011110367999999997410035767775899951688
Q gi|254780791|r 146 KIIAVITSP---TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 146 ~~i~vits~---~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
..||||.+. ++.-+.+++.-+.+ ..++.+.++++. + -+....++++.+... .+|.||+.-
T Consensus 20 ~~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~g~~l~l~~~~--~--~~~~~~~~l~~~~~~-------~~dgiIi~~--- 85 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK--H--SAEEERQAIQYLLDL-------RCDAIMIYP--- 85 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCT--T--SHHHHHHHHHHHHHT-------TCSEEEEEC---
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--C--CHHHHHHHHHHHHHC-------CCCEEEECC---
T ss_conf 97999958866468699999999999999859999999689--9--979999999999970-------987377526---
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCH
Q ss_conf 84442200769999999748904885205777525
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWT 254 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~T 254 (529)
+..+...++..+....+|||.-=..-.+..
T Consensus 86 -----~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~ 115 (296)
T 3brq_A 86 -----RFLSVDEIDDIIDAHSQPIMVLNRRLRKNS 115 (296)
T ss_dssp -----SSSCHHHHHHHHHTCSSCEEEESCCCSSSG
T ss_pred -----CCCCHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf -----667758999999964998899961247788
No 140
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=73.02 E-value=4.4 Score=18.97 Aligned_cols=83 Identities=14% Similarity=0.232 Sum_probs=48.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 2899984784258999999863---0597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
++|+||..++...-......++ ..+++.+..++. ... ..+..++..... .+|++.+.-+|+.
T Consensus 141 k~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~--~~~---~~~~~~~~~~~~--------~~d~~~~~~~~~~-- 205 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATA--LKS---ADVQSATQAIAE--------KSDVIYALIDNTV-- 205 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEEC--SSG---GGHHHHHHHHGG--------GCSEEEECSCHHH--
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCH---HHHHHHHHHCCC--------CCEEEEEECCCHH--
T ss_conf 6899995898445899999999999875987999835--886---899999984546--------6508999434235--
Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf 422007699999997489048852
Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 223 DL~~FN~e~laraI~~~~iPVisg 246 (529)
..+.+.+...-...++||++.
T Consensus 206 ---~~~~~~~~~~~~~~~~pv~~~ 226 (302)
T 2qh8_A 206 ---ASAIEGMIVAANQAKTPVFGA 226 (302)
T ss_dssp ---HTTHHHHHHHHHHTTCCEEES
T ss_pred ---HHHHHHHHHHHHHCCCCEEEE
T ss_conf ---536899999872169868840
No 141
>1yo3_A Dynein light chain 1; structural genomics consortium, microtubule, malaria, SGC, transport protein; 1.65A {Plasmodium falciparum 3D7} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 1pwj_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A 1pwk_A
Probab=72.67 E-value=3.3 Score=20.07 Aligned_cols=48 Identities=17% Similarity=0.477 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHCCCCEE--EEEEECCCCC--CCCC-CEEEEEEECCCCEEEEEEECC
Q ss_conf 9999999999740017189--9999705435--6888-627999874894799999735
Q gi|254780791|r 18 SELSYHLKHIVESNLSHVC--VRGEISGYRG--IHSS-GHAYFSLKDNHSRIDAIIWKG 71 (529)
Q Consensus 18 s~l~~~i~~~l~~~~~~~~--v~gEis~~~~--~~~s-GH~Yf~lkd~~a~i~~~~~~~ 71 (529)
.++...||..++..|+..| |+|. ||-+ .|.. ..+||.+ ..+.+.+||+
T Consensus 49 ~diA~~IK~~fDkkyg~~WhcIVG~--~FGs~vthe~~~~i~F~~----g~~~iLlfKt 101 (102)
T 1yo3_A 49 KDIAAHIKKEFDRKYDPTWHCVVGR--NFGSYVTHETKNFIYFYI----GQVAILLFKS 101 (102)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEESS--SCCCEEESCCCEEEEEEE----TTEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECC--CEEEEEEECCCCEEEEEE----CCEEEEEEEC
T ss_conf 9999999998608349867999877--636899965993999995----9999999952
No 142
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=72.60 E-value=4.5 Score=18.89 Aligned_cols=77 Identities=10% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCC--CCCCCCCCEEEEEEEEEEEC--------CCCEEE
Q ss_conf 71899999705435688862799987489479999973521058--66814598899999966752--------884379
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKI--EFLPEEGIEFLVIGKITTFP--------GSSKYQ 102 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~--~~~~~~G~~v~~~g~~~~y~--------~~g~~q 102 (529)
..|.|.|=|.+.|. .++-++++|.|..+.|.||+=+...... .-.+..|.-|.|.|.|..-+ +.|.+.
T Consensus 16 ~~V~v~Gwv~~~R~--~gkl~Fi~lrD~s~~iQvv~~~~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~~~~~ge~e 93 (585)
T 1c0a_A 16 QQVTLCGWVNRRRD--LGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIE 93 (585)
T ss_dssp CEEEEEEEEEEEEE--CSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEE
T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEEECCEEEEEEEECCCCCHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf 98999997440885--8996999999598789999979843199998449997589999899905876767777887289
Q ss_pred EEEEEEEEC
Q ss_conf 999971016
Q gi|254780791|r 103 IIIESLIPS 111 (529)
Q Consensus 103 l~v~~i~~~ 111 (529)
+.++.+..-
T Consensus 94 i~~~~l~~l 102 (585)
T 1c0a_A 94 VLASSLTII 102 (585)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
T ss_conf 999699995
No 143
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima}
Probab=71.95 E-value=4.6 Score=18.78 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHHHHHCCCCCCCCCCEEEEE--------CCCCCHHHHHHCCHHH----------HHHHHHHCCCEEEEEECCC
Q ss_conf 999741003576777589995--------1688844422007699----------9999974890488520577
Q gi|254780791|r 195 LQLNTLKEGRTCPRPDIIILA--------RGGGSIEDLWHFNDEM----------IVRAIANSSIPIISAIGHE 250 (529)
Q Consensus 195 ~~~~~~~~~~~~~~~D~iii~--------RGGGS~eDL~~FN~e~----------laraI~~~~iPVisgIGHE 250 (529)
++|-..........||++||+ .||...+||-.+|-+. -+..|-.+-+|||.+|-|=
T Consensus 297 EKF~dIkcr~~gl~P~~~VlVaTvRALK~hGg~~~~~l~~enl~al~~G~~NL~~HIeNi~~fG~pvVVAIN~F 370 (543)
T 3do6_A 297 EKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRF 370 (543)
T ss_dssp HHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEHHHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 32478745567899987899984013330579884673652899999877669998752886399736536899
No 144
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=71.72 E-value=4.6 Score=18.74 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=45.2
Q ss_pred CCCEEEEEEEE-EEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH-CCCEEE
Q ss_conf 88437999997-1016800799999999997654012261001631026528999847842589999998630-597589
Q gi|254780791|r 97 GSSKYQIIIES-LIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISC-RFPLRV 174 (529)
Q Consensus 97 ~~g~~ql~v~~-i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~-r~p~~~ 174 (529)
..|.|=.-++- .+..++.++...|+++-+++..+-- ..-..-|+||+|..|..|-.++|++...+. ..|.+|
T Consensus 45 ~~~~FFmRi~f~~~~~~~~~l~~~~~~~a~~~~m~~~------~~~~~~k~riaIlvS~~gh~L~~Ll~~~~~g~L~~eI 118 (287)
T 3nrb_A 45 DSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWW------FRPRTDRKKVVIMVSKFDHCLGDLLYRHRLGELDMEV 118 (287)
T ss_dssp TTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEE------EEETTCCCEEEEEECSCCHHHHHHHHHHHHTSSCCEE
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCEEE------ECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 9980899999975889989999999998865220023------3364568248999908970099999987745699049
Q ss_pred E
Q ss_conf 9
Q gi|254780791|r 175 I 175 (529)
Q Consensus 175 ~ 175 (529)
.
T Consensus 119 ~ 119 (287)
T 3nrb_A 119 V 119 (287)
T ss_dssp E
T ss_pred E
T ss_conf 9
No 145
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=71.56 E-value=4.7 Score=18.71 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred CEEEEEEECCCCCC-----CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECC--CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 47999997352105-----8668145988999999667528843799999710168--0079999999999765401226
Q gi|254780791|r 62 SRIDAIIWKGTLNK-----IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSG--SGTLLTALEKRKKKLLEEGLFS 134 (529)
Q Consensus 62 a~i~~~~~~~~~~~-----~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g--~G~l~~~~e~lk~~L~~eGlfd 134 (529)
.++.++++-..... +..--+.|..|+...+.---..... ++..+.... .|.+...+ +.++ +
T Consensus 57 ~~vDgIii~~~~~~~~~~~i~~a~~~gipvv~~d~~~~~~~~~~---~~~~v~~~~~~~g~~~~~~--~~~~----~--- 124 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSL---YMTTVTADNILEGKLIGDW--LVKE----V--- 124 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCSCGGG---SSEEEECCHHHHHHHHHHH--HHHH----H---
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC---EEEEEECCCHHHHHHHHHH--HHHH----C---
T ss_conf 69899999078821159999999976981999814556667773---0346833708878889999--9985----3---
Q ss_pred CCCCCCCCCCCCEEEEEECCCHH-H----HHHHHHHHHHCCC-EEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 10016310265289998478425-8----9999998630597-58999-7210011110367999999997410035767
Q gi|254780791|r 135 DQHKNPIPFIPKIIAVITSPTGA-V----IRDILQRISCRFP-LRVII-FPVKVQGDECPKEIANAILQLNTLKEGRTCP 207 (529)
Q Consensus 135 ~~~k~~lP~~p~~i~vits~~~a-~----~~D~~~~~~~r~p-~~~~~-~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~ 207 (529)
+..+.+|++++++.+. . +.-|...++ .+| ..+.. ......-+.+ .+....+-.... ..+
T Consensus 125 -------~~~~~~i~~~~g~~~~~~~~~R~~g~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-----~~p 190 (306)
T 2vk2_A 125 -------NGKPCNVVELQGTVGASVAIDRKKGFAEAIK-NAPNIKIIRSQSGDFTRSKG-KEVMESFIKAEN-----NGK 190 (306)
T ss_dssp -------TTSCEEEEEEECSTTCHHHHHHHHHHHHHTT-TCTTEEEEEEEECTTCHHHH-HHHHHHHHHHTT-----TTT
T ss_pred -------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHH-HCCCCCCEEEEECCCCHHHH-HHHHHHHHHHHC-----CCC
T ss_conf -------7787338863277776089999999999998-66998501455221004789-999999998732-----588
Q ss_pred CCCEEEEECCCCCHHHHHHCCHHH---HHHHHHHCC--CE-EEEEECCCCCCHHHHHHHC
Q ss_conf 775899951688844422007699---999997489--04-8852057775258988641
Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEM---IVRAIANSS--IP-IISAIGHETDWTLADYAAD 261 (529)
Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~---laraI~~~~--iP-VisgIGHE~D~Tl~D~VAD 261 (529)
.+|+|+ ++||.. +++++-+.. +| -|+-+|..-+-..++.+.+
T Consensus 191 ~i~ai~------------~~~d~~a~g~~~al~~~G~~~~~di~i~g~D~~~~~~~~i~~ 238 (306)
T 2vk2_A 191 NICMVY------------AHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMD 238 (306)
T ss_dssp TCCEEE------------ESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHHT
T ss_pred CCEEEE------------ECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHC
T ss_conf 631587------------358299999999999839999995799999982999999876
No 146
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=71.28 E-value=4.7 Score=18.66 Aligned_cols=143 Identities=20% Similarity=0.236 Sum_probs=63.2
Q ss_pred CEEEEEEECCCCCC---CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 47999997352105---866814598899999966752884379999971016800799999999997654012261001
Q gi|254780791|r 62 SRIDAIIWKGTLNK---IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHK 138 (529)
Q Consensus 62 a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k 138 (529)
.+++++++-+.... +...-+.|.-|++.|+.. +...+..+ ..+.. . ..++.-+.|.+.|
T Consensus 65 ~~vDgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~---~~~~~~~V--~~d~~-~-----~~~~a~~~L~~~g------- 126 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVTHGRSD---MGIEHAFH--DFDNE-A-----YAYEAVERLAQCG------- 126 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCCC---SSCCCEEE--EECHH-H-----HHHHHHHHHHHTT-------
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCC---CCCCCCEE--EECHH-H-----HHHHHHHHHHHCC-------
T ss_conf 89868998477676499999997699699917657---88998489--70899-9-----9999999998629-------
Q ss_pred CCCCCCCCEEEEEECCCHHHH-HHHH----HHHHHCCCEEEEEEEC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 631026528999847842589-9999----9863059758999721-001111036799999999741003576777589
Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVI-RDIL----QRISCRFPLRVIIFPV-KVQGDECPKEIANAILQLNTLKEGRTCPRPDII 212 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~~a~~-~D~~----~~~~~r~p~~~~~~p~-~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~i 212 (529)
.++|++++.+.+... .+.+ ..+++ +++. .+|. ...++....+...+++.+-.. .+.+|+|
T Consensus 127 ------~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~-~gl~--~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ai 192 (288)
T 3gv0_A 127 ------RKRIAVIVPPSRFSFHDHARKGFNRGIRD-FGLT--EFPIDAVTIETPLEKIRDFGQRLMQS-----SDRPDGI 192 (288)
T ss_dssp ------CCEEEEECCCTTSHHHHHHHHHHHHHHHH-TTCE--ECCCCSCCTTSCHHHHHHHHHHHTTS-----SSCCSEE
T ss_pred ------CCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCC--CCHHHHCCCCCHHHHHHHHHHHHHHH-----CCCCCCC
T ss_conf ------96089964875432387888999999998-3998--56233113310023678999998642-----2577523
Q ss_pred EEECCCCCHHHHHHCCHH---HHHHHHHHC--CCE---EEEEEC
Q ss_conf 995168884442200769---999999748--904---885205
Q gi|254780791|r 213 ILARGGGSIEDLWHFNDE---MIVRAIANS--SIP---IISAIG 248 (529)
Q Consensus 213 ii~RGGGS~eDL~~FN~e---~laraI~~~--~iP---VisgIG 248 (529)
+. +||+ .+.+++.+. ++| .|.|.+
T Consensus 193 ~~------------~~d~~a~~~~~~l~~~g~~vP~dv~iigfd 224 (288)
T 3gv0_A 193 VS------------ISGSSTIALVAGFEAAGVKIGEDVDIVSKQ 224 (288)
T ss_dssp EE------------SCHHHHHHHHHHHHTTTCCTTTSCEEEEEE
T ss_pred CC------------CCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 44------------666999999999998499889851899977
No 147
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=71.28 E-value=4.7 Score=18.66 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=57.0
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEE----------------CCCC----------------CCCHHH
Q ss_conf 528999847-842589999998630---5975899972----------------1001----------------111036
Q gi|254780791|r 145 PKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFP----------------VKVQ----------------GDECPK 188 (529)
Q Consensus 145 p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p----------------~~vQ----------------G~~a~~ 188 (529)
.|||||+|| -.+.++..+++-+-+ .++++|+-+. ..|. -.....
T Consensus 1 mkrI~IltsGG~~pG~Na~i~~~v~~a~~~~~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~ 80 (319)
T 1zxx_A 1 MKRIGILTSGGDAPGMNAAVRAVTRVAIANGLEVFGIRYGFAGLVAGDIFPLESEDVAHLINVSGTFLYSARYPEFAEEE 80 (319)
T ss_dssp CCEEEEEECSSCCTTHHHHHHHHHHHHHTTTCEEEEECTHHHHHHHTCEEECCGGGGTTCTTCCSCTTCCCCCGGGTSHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCCHH
T ss_conf 98899988478746699999999999997899899985017885689907799999988870798521468887664367
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf 7999999997410035767775899951688844422007699999997489048852057775258
Q gi|254780791|r 189 EIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL 255 (529)
Q Consensus 189 ~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl 255 (529)
...++++.+.+. +.|.+|++=|-||.... ...++..+||| ||=.-+|--|
T Consensus 81 ~~~~~~~~l~~~-------~Id~Li~iGGdgS~~~a---------~~l~~~~i~vi-gIPkTIDNDl 130 (319)
T 1zxx_A 81 GQLAGIEQLKKH-------GIDAVVVIGGDGSYHGA---------LQLTRHGFNSI-GLPGTIDNDI 130 (319)
T ss_dssp HHHHHHHHHHHT-------TCCEEEEEECHHHHHHH---------HHHHHTTCCEE-EEEEETTCCC
T ss_pred HHHHHHHHHHHC-------CCCEEEEECCCCHHHHH---------HHHHHCCCCEE-EEEEECCCCC
T ss_conf 789999999976-------99899993796179999---------99775368567-7620016898
No 148
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=70.44 E-value=4.9 Score=18.52 Aligned_cols=36 Identities=3% Similarity=-0.113 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999
Q gi|254780791|r 412 RIFYLHTHIKKLITRIEFILSHKIKSCHTSVSITTR 447 (529)
Q Consensus 412 ~l~~~~~~l~~l~~rL~~~~~~~L~~~~~rL~~l~~ 447 (529)
.+...+..+......+...+...++..+.+|..+..
T Consensus 151 ~~eel~~~L~~~~ee~~~k~~~~~eelr~~l~p~~e 186 (191)
T 1nfn_A 151 DADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVE 186 (191)
T ss_dssp HHHHHHHHHHHHTC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999988999999999999899999999887799
No 149
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei}
Probab=69.95 E-value=5 Score=18.44 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH-CCCEEEEE
Q ss_conf 00799999999997654012261001631026528999847842589999998630-59758999
Q gi|254780791|r 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISC-RFPLRVII 176 (529)
Q Consensus 113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~-r~p~~~~~ 176 (529)
..+|...|+.+-+++..+ -+..-..-|.||+|..|..|..++|++...+. ..|.+|.+
T Consensus 69 ~~~l~~~~~~~a~~~~m~------~~~~~~~~~~riavlvSg~g~~L~~Ll~~~~~g~L~~eI~~ 127 (292)
T 3lou_A 69 VDALRREFEPIAERFRMQ------WAIHDVAARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVG 127 (292)
T ss_dssp HHHHHHHHHHHHHHHTCE------EEEEETTSCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEE
T ss_pred HHHHHHHHHHHHHHCCCC------EECCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 899999988666543872------33045456836999967998269999999976999817999
No 150
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661}
Probab=69.74 E-value=3.2 Score=20.20 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=35.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 89998478425899999986305975899972100111103679999999974100357677758999516888444220
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
.||||+=. |+ +...++.+++ .++++.+... +.+ ...+|.|||- ||++-.--+.
T Consensus 2 ~igil~~~-G~-~~~~~~al~~-~g~~~~~v~~-------~~~----------------l~~~d~lIlp-GG~~~~~~~~ 54 (186)
T 2ywj_A 2 IIGVLAIQ-GD-VEEHEEAIKK-AGYEAKKVKR-------VED----------------LEGIDALIIP-GGESTAIGKL 54 (186)
T ss_dssp EEEEECSS-SC-CHHHHHHHHH-TTSEEEEECS-------GGG----------------GTTCSEEEEC-CSCHHHHHHH
T ss_pred EEEEEECC-CC-HHHHHHHHHH-CCCCEEEECC-------HHH----------------HHCCCEEEEC-CCCHHHHHHH
T ss_conf 89999167-75-9999999998-8993999899-------899----------------7179989999-9871788876
Q ss_pred CCHHHHHHHHHHCCCEEEE
Q ss_conf 0769999999748904885
Q gi|254780791|r 227 FNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 227 FN~e~laraI~~~~iPVis 245 (529)
.....+.+.+.+..+||+-
T Consensus 55 ~~~~~~~~~~~~~~~PiLG 73 (186)
T 2ywj_A 55 MKKYGLLEKIKNSNLPILG 73 (186)
T ss_dssp HHHTTHHHHHHTCCCCEEE
T ss_pred CCCCCHHHHHHHCCCCEEE
T ss_conf 4416638999977998899
No 151
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=69.73 E-value=4.8 Score=18.63 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEECC
Q ss_conf 7314619998489889577789299986999991109999995057
Q gi|254780791|r 457 TLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKA 502 (529)
Q Consensus 457 ~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~k~ 502 (529)
..+.|..-| ||+.++.+..++.||.|+|...+......|.+-.
T Consensus 30 ~i~~G~V~v---Ng~~~K~s~~v~~gD~i~i~~~~~~~~i~V~~l~ 72 (133)
T 1dm9_A 30 MIEGGKVHY---NGQRSKPSKIVELNATLTLRQGNDERTVIVKAIT 72 (133)
T ss_dssp HHHTTCEEE---TTEECCTTCBCCTTCEEEEEETTEEEEEEECEEE
T ss_pred HHHCCCEEE---CCEECCCCCCCCCCCEEEEEECCCEEEEEEEECC
T ss_conf 998694798---9964676666889998999868926799999767
No 152
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=69.38 E-value=5.1 Score=18.35 Aligned_cols=71 Identities=20% Similarity=0.342 Sum_probs=40.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH--
Q ss_conf 289998478425899999986305975899972100111103679999999974100357677758999516888444--
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED-- 223 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD-- 223 (529)
-|||||.=+ | .++++++.|++ ..+++.+... +.+ ...+|.||| .||+..+
T Consensus 21 mkIgVi~~~-G-n~~s~~~aL~~-lG~~~~iv~~-------~~~----------------l~~~D~lIL--PGG~~~~~~ 72 (208)
T 2iss_D 21 MKIGVLGVQ-G-DVREHVEALHK-LGVETLIVKL-------PEQ----------------LDMVDGLIL--PGGESTTMI 72 (208)
T ss_dssp CEEEEECSS-S-CHHHHHHHHHH-TTCEEEEECS-------GGG----------------GGGCSEEEE--CSSCHHHHH
T ss_pred CEEEEEECC-C-CHHHHHHHHHH-CCCCEEEECC-------HHH----------------HHCCCEEEE--CCCCHHHHH
T ss_conf 789999568-8-79999999998-8998999899-------899----------------825999999--999989999
Q ss_pred --HHHCCHHHHHHHHHHCCCEEE
Q ss_conf --220076999999974890488
Q gi|254780791|r 224 --LWHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 224 --L~~FN~e~laraI~~~~iPVi 244 (529)
|+..+-.+..+..++...||+
T Consensus 73 ~~l~~~~~~~~i~~~~~~~kPiL 95 (208)
T 2iss_D 73 RILKEMDMDEKLVERINNGLPVF 95 (208)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCEE
T ss_pred HHHHHCCCHHHHHHHHHCCCCEE
T ss_conf 99998698899999998699889
No 153
>3p85_A Enoyl-COA hydratase; ssgcid, mycobacerium avium, structural seattle structural genomics center for infectious disease,; HET: 1PE; 1.90A {Mycobacterium avium}
Probab=69.35 E-value=1.5 Score=23.22 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHCCHH----HHHHHHHHCCCEEEEEE-CCCCCC-HHH
Q ss_conf 036799999999741003576777589995168884---442200769----99999974890488520-577752-589
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHFNDE----MIVRAIANSSIPIISAI-GHETDW-TLA 256 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~FN~e----~laraI~~~~iPVisgI-GHE~D~-Tl~ 256 (529)
-..++..++..++... .+.+|||.-.|+.+ -||..|... .+.+++..||.|||++| ||=.-- ...
T Consensus 53 ~~~el~~al~~~~~d~------~vr~vvltg~g~~F~aG~dl~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~l 126 (270)
T 3p85_A 53 LRDRFFGALADAETDD------DVDVVIITGADPVFCAGLDLKELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLEL 126 (270)
T ss_dssp HHHHHHHHHHHHHHCT------TCSEEEEEESTTCSBCCBCTTTC------CCCCCCCCCCSSCEEEEECSEEETHHHHH
T ss_pred HHHHHHHHHHHHHHCC------CEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHH
T ss_conf 9999999999997598------9169999799867246751454122113456899998689999999889755077999
Q ss_pred HHHHCCCCCCCHH
Q ss_conf 8864123777214
Q gi|254780791|r 257 DYAADLRAPTPTG 269 (529)
Q Consensus 257 D~VAD~Ra~TPTa 269 (529)
=+.+|.|..++.+
T Consensus 127 al~~D~ria~~~a 139 (270)
T 3p85_A 127 ALYCDILIASENA 139 (270)
T ss_dssp HHHSSEEEEETTC
T ss_pred HHHCCEEEECCCC
T ss_conf 8626758966887
No 154
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815}
Probab=69.16 E-value=5.2 Score=18.31 Aligned_cols=28 Identities=21% Similarity=0.031 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 111103679999999974100357677758999
Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529)
Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529)
+|+....+...++..+-... +.+|+|+.
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~-----~~~~ai~~ 195 (290)
T 2rgy_A 168 ESDFSPEGGYAATCQLLESK-----APFTGLFC 195 (290)
T ss_dssp ECCSSHHHHHHHHHHHHHHT-----CCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCC-----CCCCEEEE
T ss_conf 46888899999997520025-----67633885
No 155
>3glc_A Aldolase LSRF; TIM barrel, cytoplasm, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli k-12} PDB: 3gnd_A* 3gkf_O
Probab=68.56 E-value=5.3 Score=18.22 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=51.5
Q ss_pred HHHHHHHHHH--HHCCCEEEEEEE-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHH
Q ss_conf 5899999986--305975899972-1001111036799999999741003576777589995168884442200769999
Q gi|254780791|r 157 AVIRDILQRI--SCRFPLRVIIFP-VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIV 233 (529)
Q Consensus 157 a~~~D~~~~~--~~r~p~~~~~~p-~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~la 233 (529)
.-++++.+.. .++|.+.+++++ .....+..+..|..|.+.+..+. .|+|.+. |.++...
T Consensus 155 ~ml~~~~~~~~~a~~~glpll~~~~~~~~~~~d~~~ia~aaR~a~ElG-------ADiVK~~-----------y~~~~~~ 216 (295)
T 3glc_A 155 QSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMG-------AQIIKTY-----------YVEKGFE 216 (295)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTT-------CSEEEEE-----------CCTTTHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHC-------CCEEECC-----------CCCCCHH
T ss_conf 999999999999736596189983367656534799999999999958-------9954604-----------8852377
Q ss_pred HHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf 9997489048852057775258988641
Q gi|254780791|r 234 RAIANSSIPIISAIGHETDWTLADYAAD 261 (529)
Q Consensus 234 raI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529)
+.++.|++|||.+=|-..|. -|++.-
T Consensus 217 ~v~~a~~vPvv~~GG~~~~d--~~~l~~ 242 (295)
T 3glc_A 217 RIVAGCPVPIVIAGGKKLPE--REALEM 242 (295)
T ss_dssp HHHHTCSSCEEEECCSCCCH--HHHHHH
T ss_pred HHHHCCCCCEEEECCCCCCH--HHHHHH
T ss_conf 75215886468768987557--899999
No 156
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae}
Probab=68.50 E-value=5.1 Score=18.35 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=33.1
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCC
Q ss_conf 7775899951688844422007699---9999974890488520577752
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDW 253 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~ 253 (529)
..||+|+|.-|-|...||+ +++. +++..++..-| |.+|.|-.-.
T Consensus 97 ~~ydav~~pGG~g~~~dl~--~~~~l~~l~~~~~~~~k~-vaaiChgp~~ 143 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYP--KAKNLQDIASKIYANGGV-IAAICHGPLL 143 (244)
T ss_dssp GGCSEEEECCSTTHHHHGG--GCHHHHHHHHHHHHTTCE-EEEETTGGGG
T ss_pred HHCEEEEECCCCCCCCCCH--HHHHHHHHHHHHHHCCCE-EEEECHHHHH
T ss_conf 5751899759863312221--225689999999847983-9996506899
No 157
>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718}
Probab=68.50 E-value=5.3 Score=18.26 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHH-HHHHHCCCEEEE
Q ss_conf 11036799999999741003576777589995168884442200769999-999748904885
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIV-RAIANSSIPIIS 245 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~la-raI~~~~iPVis 245 (529)
..+...|++..+.. .+|+||++.-|-+... +.|. .++ +-+-.+++||+.
T Consensus 95 g~~~~~I~~~a~~~----------~~dliV~G~~~~~~~~-~~lG--S~~~~v~~~s~~pVlv 144 (150)
T 2pfs_A 95 GEPREEIIRIAEQE----------NVDLIVVGSHGRHGLA-LLLG--STANSVLHYAKCDVLA 144 (150)
T ss_dssp SCHHHHHHHHHHHT----------TCSEEEEEEC-------------CHHHHHHHHCSSEEEE
T ss_pred CCHHHHHHHHHHHC----------CCCEEEEECCCCCCCC-CCCC--CHHHHHHHCCCCCEEE
T ss_conf 88899999999863----------8767987279999652-6517--7899998536989999
No 158
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=68.43 E-value=5.3 Score=18.19 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=51.9
Q ss_pred CCEEEEEECCCHHHH-HHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 528999847842589-99999863---05975899972100111103679999999974100357677758999516888
Q gi|254780791|r 145 PKIIAVITSPTGAVI-RDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 145 p~~i~vits~~~a~~-~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
.++||||..-....+ ..+.+-+. +..+++++++.+ .+-+..-.++|+.+-.. ++|.||+.= .+
T Consensus 5 gk~Ig~i~~~~~~~f~~~~~~g~~~~a~~~G~~~~~~~~----~~d~~~q~~~i~~~i~~-------~vDgiIi~~--~~ 71 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA----GRNDQTQVSQIQTLIAQ-------KPDAIIEQL--GN 71 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHH-------CCSEEEEES--SC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHC-------CCCEEEECC--CC
T ss_conf 999999958999889999999999999974999999938----99999999999999974-------999999778--64
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 44422007699999997489048852057775
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETD 252 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D 252 (529)
.+ . -..+++...+..||||+ ++...+
T Consensus 72 ~~---~--~~~~l~~~~~~~IPvv~-~~~~~~ 97 (291)
T 3l49_A 72 LD---V--LNPWLQKINDAGIPLFT-VDTATP 97 (291)
T ss_dssp HH---H--HHHHHHHHHHTTCCEEE-ESCCCT
T ss_pred CH---H--HHHHHHHHHHCCCCEEE-CCCCCC
T ss_conf 03---1--58999999986993784-465457
No 159
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=68.33 E-value=5.4 Score=18.18 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=60.3
Q ss_pred CCEEEEEECC----CHHHHHHHHHHHH--HCCCEEEEEEECC---CCC------C--CHHHHHHHHHHHH-----HHHCC
Q ss_conf 5289998478----4258999999863--0597589997210---011------1--1036799999999-----74100
Q gi|254780791|r 145 PKIIAVITSP----TGAVIRDILQRIS--CRFPLRVIIFPVK---VQG------D--ECPKEIANAILQL-----NTLKE 202 (529)
Q Consensus 145 p~~i~vits~----~~a~~~D~~~~~~--~r~p~~~~~~p~~---vQG------~--~a~~~i~~ai~~~-----~~~~~ 202 (529)
-+||+||-|. +|.=...+.-.+. +|.++++.++... +++ + .....+...-..+ ..+.+
T Consensus 6 MKKvaviLsg~g~~DG~E~~E~~~p~~~L~raG~~V~~~sp~~~~~~~~~h~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 85 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCHHH
T ss_conf 67599996688787750298999999999988997999957998553122567860134233352002153015676668
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHC---------CH--HHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 3576777589995168884442200---------76--999999974890488520577752
Q gi|254780791|r 203 GRTCPRPDIIILARGGGSIEDLWHF---------ND--EMIVRAIANSSIPIISAIGHETDW 253 (529)
Q Consensus 203 ~~~~~~~D~iii~RGGGS~eDL~~F---------N~--e~laraI~~~~iPVisgIGHE~D~ 253 (529)
. ....||+|||-=|-|+..+|+-| |+ ..+++..++..-|| .+|.|-.-.
T Consensus 86 v-~~~dyD~lviPGG~g~~~~L~~~~~~~~~~~~~~~v~~~i~~~~~~~K~i-aaIC~ap~~ 145 (232)
T 1vhq_A 86 A-DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPL-GFMCIAPAM 145 (232)
T ss_dssp C-CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCE-EEETTGGGG
T ss_pred C-CHHHCCEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCE-EEECHHHHH
T ss_conf 8-94128889978995428886540024643333999999999999869979-998866999
No 160
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
Probab=68.25 E-value=5.4 Score=18.17 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=72.6
Q ss_pred EEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH----
Q ss_conf 9966752884379999971016800799999999997654012261001631026528999847842589999998----
Q gi|254780791|r 90 GKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQR---- 165 (529)
Q Consensus 90 g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~---- 165 (529)
-++++|+..++..+.+..+... ... +...|+.+.- +.+=..|.-+-+||+|+|+|--=-+..
T Consensus 94 ~Rv~~~~~~~g~~~~lR~l~~~-~~~-----------~~~~~l~~~l--~~~~~~~~Glilv~GpTGSGKTTtl~a~l~~ 159 (372)
T 2ewv_A 94 FRANVFYQRGSVAAALRSLPAE-IPE-----------FKKLGLPDKV--LELCHRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECCSSSCBEEECCBCSS-CCC-----------HHHHCCCSSH--HHHTTSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEEEECCCCC-CCC-----------HHHHCCCHHH--HHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9998503478456674016512-386-----------1220385999--9998646975999879997489999999998
Q ss_pred HHHCCCEEEEEE--------E------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf 630597589997--------2------10011110367999999997410035767775899951688844422007699
Q gi|254780791|r 166 ISCRFPLRVIIF--------P------VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM 231 (529)
Q Consensus 166 ~~~r~p~~~~~~--------p------~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529)
+....+..++-+ | +.-+......+...+|+.+-+.+ ||+|+|+ -+.|++
T Consensus 160 ~~~~~~~~iitiEdPiE~~~~~~~~~~~~~~~~~~~~sf~~~lr~~LR~d-------PDvi~vG----------EiRD~e 222 (372)
T 2ewv_A 160 INQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRED-------PDVIFVG----------EMRDLE 222 (372)
T ss_dssp HHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC-------CSEEEES----------CCCSHH
T ss_pred HHCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCC-------CCEEEEC----------CCCCHH
T ss_conf 41336642588537641003677703674213777568999999987559-------9978605----------769989
Q ss_pred HHHHH---HHCCCEEEEEECCCCC
Q ss_conf 99999---7489048852057775
Q gi|254780791|r 232 IVRAI---ANSSIPIISAIGHETD 252 (529)
Q Consensus 232 laraI---~~~~iPVisgIGHE~D 252 (529)
.|++. +.+-..|+|-+ |-.|
T Consensus 223 ta~~a~~aA~tGhlV~tTl-Ha~~ 245 (372)
T 2ewv_A 223 TVETALRAAETGHLVFGTL-HTNT 245 (372)
T ss_dssp HHHHHHHHHTTTCEEEECC-CCCS
T ss_pred HHHHHHHHHHCCCEEEEEE-CCCC
T ss_conf 9999999997299099864-6699
No 161
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens}
Probab=68.23 E-value=5.4 Score=18.16 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCCCCH---HHHHHC----------------CHHHHHHHHHHCCCEEEEE
Q ss_conf 36799999999741003576777589995-168884---442200----------------7699999997489048852
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILA-RGGGSI---EDLWHF----------------NDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~-RGGGS~---eDL~~F----------------N~e~laraI~~~~iPVisg 246 (529)
..++..+++.++... .+-+|||. -||.++ -||-.| +...+..+|..||.|||++
T Consensus 35 ~~eL~~~l~~~~~d~------~v~~vvltga~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 108 (363)
T 3bpt_A 35 IRQIYPQLKKWEQDP------ETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVAL 108 (363)
T ss_dssp HHHHHHHHHHHHHCT------TCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHCC------CCEEEEEECCCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999998499------97699996689982117816787741223321003677767768999999689989980
Q ss_pred E-----CCCCCCHHHHHHHCCCCCCCHH
Q ss_conf 0-----5777525898864123777214
Q gi|254780791|r 247 I-----GHETDWTLADYAADLRAPTPTG 269 (529)
Q Consensus 247 I-----GHE~D~Tl~D~VAD~Ra~TPTa 269 (529)
| |.-.... +.+|+|..|+++
T Consensus 109 v~G~a~GgG~~la---~~~D~~ia~~~a 133 (363)
T 3bpt_A 109 IHGITMGGGVGLS---VHGQFRVATEKC 133 (363)
T ss_dssp ECSEEETHHHHTT---TTSSEEEECTTC
T ss_pred CCCCEEECCHHHH---CCCEEEECCCCC
T ss_conf 6994735125552---033131038974
No 162
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=67.25 E-value=5.6 Score=18.01 Aligned_cols=137 Identities=18% Similarity=0.274 Sum_probs=75.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCC
Q ss_conf 97101680079999999999765401226100163102652899984784258--9999998630597589997210011
Q gi|254780791|r 106 ESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQG 183 (529)
Q Consensus 106 ~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG 183 (529)
.++.+..+|.+...|++.-++|.. ++..+ ..-+|+||.+.++.- .+.+..+|.+ |.+. |.+.|=+
T Consensus 235 ~~v~~~~l~~v~~~Y~~v~~rl~~--~lksk-------~~~~V~Ii~GS~SD~~~~~~~~~~l~~-~~i~---~~~~v~S 301 (425)
T 2h31_A 235 KEVTPEGLQMVKKNFEWVAERVEL--LLKSE-------SQCRVVVLMGSTSDLGHCEKIKKACGN-FGIP---CELRVTS 301 (425)
T ss_dssp ----CCSSSCCCCCHHHHHTTGGG--GGSCS-------CCCEEEEEESCGGGHHHHHHHHHHHHH-TTCC---EEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHCCC-------CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCC---CEEEEEE
T ss_conf 000277887999999999998653--10246-------676358871465079999999999998-2842---1476750
Q ss_pred CC-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf 11-0367999999997410035767775899951688844422007699999997-489048852057775258988641
Q gi|254780791|r 184 DE-CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA-NSSIPIISAIGHETDWTLADYAAD 261 (529)
Q Consensus 184 ~~-a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~-~~~iPVisgIGHE~D~Tl~D~VAD 261 (529)
.+ .|..+.+-++.+.... +..|+|+=+|+|-- |.=.|+ .++.|||-==-.-.+.-+-++-|-
T Consensus 302 aHr~p~~~~~~~~~~~~~~-------~~~v~ia~aG~sa~---------L~g~va~~t~~PVIgvP~~~~~~g~d~l~S~ 365 (425)
T 2h31_A 302 AHKGPDETLRIKAEYEGDG-------IPTVFVAVAGRSNG---------LGPVMSGNTAYPVISCPPLTPDWGVQDVWSS 365 (425)
T ss_dssp TTTCHHHHHHHHHHHHTTC-------CCEEEEEECCSSCC---------HHHHHHHHCSSCEEECCCCCTTTHHHHGGGT
T ss_pred CCCCHHHHHHHHHHHHHCC-------CCEEEEEECCCCCC---------CHHHHHHCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 6679899999999998669-------97799984663224---------3455332368997976787566656888987
Q ss_pred CCCCCCHHHH
Q ss_conf 2377721456
Q gi|254780791|r 262 LRAPTPTGAA 271 (529)
Q Consensus 262 ~Ra~TPTaAA 271 (529)
+..|+...+|
T Consensus 366 ~qmp~gvpv~ 375 (425)
T 2h31_A 366 LRLPSGLGCS 375 (425)
T ss_dssp SSCCSSCCCE
T ss_pred HCCCCCCCEE
T ss_conf 1489998157
No 163
>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=67.25 E-value=5.6 Score=18.01 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=37.8
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 28999847-842589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
+.||||.+ -+..-+.++++-+.+ ..++.++++++. .+. ..-...++.+... .+|.||+
T Consensus 9 ~~IGvi~p~~~~~~~~~l~~~i~~~a~~~g~~~~~~~~~---~~~-~~e~~~~~~l~~~-------~vdgiii------- 70 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD---NDI-KKAQGYLATFVSH-------NCTGMIS------- 70 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT---TCH-HHHHHHHHHHHHT-------TCSEEEE-------
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC---CCH-HHHHHHHHHHHHC-------CCEEEEE-------
T ss_conf 989999099977899999999999999849999999789---998-9999999999865-------9829995-------
Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf 4422007699999997489048852
Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisg 246 (529)
+++++..+...+....+||+..
T Consensus 71 ---~~~~~~~~~~~l~~~~ipvv~~ 92 (277)
T 3e61_A 71 ---TAFNENIIENTLTDHHIPFVFI 92 (277)
T ss_dssp ---CGGGHHHHHHHHHHC-CCEEEG
T ss_pred ---CCCCHHHHHHHHHHCCCCEEEE
T ss_conf ---2531057999999759988997
No 164
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=66.76 E-value=5.7 Score=17.94 Aligned_cols=89 Identities=8% Similarity=0.093 Sum_probs=49.3
Q ss_pred CEEEEEECCCHHHHHHHH-HHHHH---CC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 289998478425899999-98630---59-75899972100111103679999999974100357677758999516888
Q gi|254780791|r 146 KIIAVITSPTGAVIRDIL-QRISC---RF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~-~~~~~---r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
.|||||-+.....+..-+ +-+++ .. .+++.++. +++-+..-.+.|+.+-.. ++|+||++-..++
T Consensus 3 ~kIgv~~~~~~~~f~~~~~~g~~~~a~~~~~~~l~~~~----~~~d~~~q~~~i~~~i~~-------~vD~iiv~~~d~~ 71 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND----SQNDQSKQNDQIDVLLAK-------GVKALAINLVDPA 71 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEE----CTTCHHHHHHHHHHHHHT-------TCSEEEECCSSGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCCHHHHHHHHHHHHHC-------CCCEEEECCCCHH
T ss_conf 88999978998989999999999999876992899975----999999999999999976-------9999996674224
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 444220076999999974890488520577752
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529)
.. ..+.+......||||+ +.+..+.
T Consensus 72 ~~-------~~~l~~a~~~gipvv~-~d~~~~~ 96 (309)
T 2fvy_A 72 AA-------GTVIEKARGQNVPVVF-FNKEPSR 96 (309)
T ss_dssp GH-------HHHHHHHHTTTCCEEE-ESSCCCH
T ss_pred HH-------HHHHHHHHHCCCCEEE-ECCCCCC
T ss_conf 15-------9999999986997899-6577753
No 165
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=66.53 E-value=5.8 Score=17.90 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=44.4
Q ss_pred CCCCEEEEECCCCCHHHHHHCCH--HHHHHHHHHCCCEEEEEECCCCCCHHH----H---HHHCCCCCCCHHHHHHHCC
Q ss_conf 77758999516888444220076--999999974890488520577752589----8---8641237772145676332
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFND--EMIVRAIANSSIPIISAIGHETDWTLA----D---YAADLRAPTPTGAAEMAVP 276 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~--e~laraI~~~~iPVisgIGHE~D~Tl~----D---~VAD~Ra~TPTaAAElavp 276 (529)
.+||+|+|.=|.|+..||+. |+ -.+++..++..- +|.+|.|-.=.-+. | ++.+.++-.-|.+.|...+
T Consensus 88 ~dydav~ipGG~g~~~~l~~-~~~l~~li~~~~~~~k-~iaaIChgp~~L~~a~~~~g~~ll~gk~~T~~~~~~e~~~~ 164 (224)
T 1u9c_A 88 HGFDAIFLPGGHGTMFDFPD-NETLQYVLQQFAEDGR-IIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVG 164 (224)
T ss_dssp SSCSEEEECCCTTHHHHSTT-CHHHHHHHHHHHHTTC-EEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHHHHHT
T ss_pred HHCCEEEECCCCCHHHHCCC-HHHHHHHHHHHHHCCC-EEEEECCCHHHHHCEECCCCCEEECCCEECCCCCHHHHHHC
T ss_conf 56898995898307775211-5899999999997599-79996123000111125899712279442378979998624
No 166
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=66.50 E-value=5.8 Score=17.90 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHC--CHHHHHH
Q ss_conf 8999999863059758999721001111036799999999741003576777589995168-884442200--7699999
Q gi|254780791|r 158 VIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHF--NDEMIVR 234 (529)
Q Consensus 158 ~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~F--N~e~lar 234 (529)
.+.++...+.. .++++. .....|. ....|++..+.. .+|+||++.-| |.++.+| | ..+.|+
T Consensus 84 ~l~~~~~~~~~-~~v~~~--~~~~~G~-~~~~I~~~a~~~----------~~DlIVvG~~~~~~~~~~~-~GS~s~~l~- 147 (162)
T 1mjh_A 84 KMENIKKELED-VGFKVK--DIIVVGI-PHEEIVKIAEDE----------GVDIIIMGSHGKTNLKEIL-LGSVTENVI- 147 (162)
T ss_dssp HHHHHHHHHHH-TTCEEE--EEEEEEC-HHHHHHHHHHHT----------TCSEEEEESCCSSCCTTCS-SCHHHHHHH-
T ss_pred HHHHHHHHHHH-CCCEEE--EEEEECC-HHHHHHHHHCCC----------CCCEEEECCCCCCCCCCCC-CCCHHHHHH-
T ss_conf 99999998876-597699--9999367-899999873356----------5898998478998655461-074999999-
Q ss_pred HHHHCCCEEEE
Q ss_conf 99748904885
Q gi|254780791|r 235 AIANSSIPIIS 245 (529)
Q Consensus 235 aI~~~~iPVis 245 (529)
-.|+.||+.
T Consensus 148 --~~a~~PVlv 156 (162)
T 1mjh_A 148 --KKSNKPVLV 156 (162)
T ss_dssp --HHCCSCEEE
T ss_pred --HCCCCCEEE
T ss_conf --608999999
No 167
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D
Probab=66.36 E-value=5.8 Score=17.88 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCCEEEEEEECCCCCCCCCC-EE-EEEEE------CC--------CCEEEEEEECCC-CCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 17189999970543568886-27-99987------48--------947999997352-1058668145988999999667
Q gi|254780791|r 32 LSHVCVRGEISGYRGIHSSG-HA-YFSLK------DN--------HSRIDAIIWKGT-LNKIEFLPEEGIEFLVIGKITT 94 (529)
Q Consensus 32 ~~~~~v~gEis~~~~~~~sG-H~-Yf~lk------d~--------~a~i~~~~~~~~-~~~~~~~~~~G~~v~~~g~~~~ 94 (529)
+..|-+.|-|.+.-.+..+| ++ -|+|- |. .--+.|++|... +..+.-.++-|++|.|.|++..
T Consensus 6 ~N~V~LiG~v~D~e~~~~~~~~v~~fslA~~~~~~~~~~g~~~~~t~w~~v~~~g~~~ae~~~~~l~KG~~V~V~G~l~~ 85 (148)
T 3k7u_C 6 VNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRLRL 85 (148)
T ss_dssp CCCEEEEEEEEEEEEEESSSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEEECCCEEEEEEEEEEEEEEECCCCCEECCCCEEEEEEECHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 32899999668970576089808999985323247068882603442799999857999999988467999999999775
No 168
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=66.31 E-value=4.2 Score=19.08 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCEEEEECCCC-CHHHHHHCCHHHHHHHHHHCCCEEEE-----EECCCCCCHHHHHHHCCCC
Q ss_conf 75899951688-84442200769999999748904885-----2057775258988641237
Q gi|254780791|r 209 PDIIILARGGG-SIEDLWHFNDEMIVRAIANSSIPIIS-----AIGHETDWTLADYAADLRA 264 (529)
Q Consensus 209 ~D~iii~RGGG-S~eDL~~FN~e~laraI~~~~iPVis-----gIGHE~D~Tl~D~VAD~Ra 264 (529)
.| ++|+|||| ++-++ +.+.+|+|. +.|||... ++++++.-+
T Consensus 255 aD-lvIt~aG~~Ti~E~------------l~~g~P~I~iP~~~~~~~Q~~N--A~~l~~~G~ 301 (364)
T 1f0k_A 255 AD-VVVCRSGALTVSEI------------AAAGLPALFVPFQHKDRQQYWN--ALPLEKAGA 301 (364)
T ss_dssp CS-EEEECCCHHHHHHH------------HHHTCCEEECCCCCTTCHHHHH--HHHHHHTTS
T ss_pred CC-EEEECCCCCHHHHH------------HHCCCCEEEEECCCCCCHHHHH--HHHHHHCCC
T ss_conf 67-77745884058899------------8638988998079987769999--999997899
No 169
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata}
Probab=66.11 E-value=5.9 Score=17.84 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 11110367999999997410035767775899951-68884442200769999999748904885
Q gi|254780791|r 182 QGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 182 QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.+......|++..+.. ++|+||+++ |=+.+..+ .|- -..-+-+-.+++||+.
T Consensus 94 ~~g~~~~~I~~~a~~~----------~~dliV~G~~~~~~~~~~-~~G-S~~~~l~~~~~~PVlv 146 (147)
T 3hgm_A 94 KGGRPSRTIVRFARKR----------ECDLVVIGAQGTNGDKSL-LLG-SVAQRVAGSAHCPVLV 146 (147)
T ss_dssp EESCHHHHHHHHHHHT----------TCSEEEECSSCTTCCSCC-CCC-HHHHHHHHHCSSCEEE
T ss_pred ECCCHHHHHHHHHCCC----------CCCEEEECCCCCCCCCCC-CCC-CHHHHHHHCCCCCEEE
T ss_conf 6377899887752035----------888899717999865456-227-5999999728999995
No 170
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, open form, form J, domain movement, cyclase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=66.04 E-value=5.9 Score=17.83 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=48.5
Q ss_pred CCEEEEEECCCHHHH--HHHHHHHHHC------CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCCCEEEE
Q ss_conf 528999847842589--9999986305------97-589997210011110367999999997410035-7677758999
Q gi|254780791|r 145 PKIIAVITSPTGAVI--RDILQRISCR------FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGR-TCPRPDIIIL 214 (529)
Q Consensus 145 p~~i~vits~~~a~~--~D~~~~~~~r------~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~-~~~~~D~iii 214 (529)
..++.|||-++-..+ .+|...+... .+ +.++.+|. ||.+ +++-...+..+.+.+.. ...+-| +||
T Consensus 36 ~~~~~iitD~~v~~l~~~~i~~~l~~~~~~~~~~~~~~~~~~p~---gE~~-K~~~~~~~i~~~l~~~~~~~~r~d-~iI 110 (393)
T 1sg6_A 36 STTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPP---GEVS-KSRQTKADIEDWMLSQNPPCGRDT-VVI 110 (393)
T ss_dssp CSEEEEEEEHHHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECS---SGGG-SSHHHHHHHHHHHHTSSSCCCTTC-EEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC---CCCC-CCHHHHHHHHHHHHHCCCCCCCCC-EEE
T ss_conf 98189998896579899999999987175224676248998379---9553-999999999999985354678876-699
Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 5168884442200769999999748904885
Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+=|||..-|+.-| +-+.|.-.+|.|.
T Consensus 111 aiGGG~v~D~ak~-----~A~~y~rgi~~i~ 136 (393)
T 1sg6_A 111 ALGGGVIGDLTGF-----VASTYMRGVRYVQ 136 (393)
T ss_dssp EEESHHHHHHHHH-----HHHHGGGCCEEEE
T ss_pred EECCCCHHHHHHH-----HHHHHHCCCCEEE
T ss_conf 9558503245677-----7777626874354
No 171
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=66.04 E-value=5.9 Score=17.83 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHC
Q ss_conf 99976540122610016310265289998478425899999986305975899972100-11110367999999997410
Q gi|254780791|r 123 RKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLK 201 (529)
Q Consensus 123 lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~ 201 (529)
+-+...+.|-.+.-- ...|.|.. ++-.++-++.+.+.+.-++.+++|..+. -|-.-..+++..|...
T Consensus 94 la~~a~~~g~~~~~~-~~~P~~~~-------~s~~~l~~~f~~ia~~~~lPi~lYn~P~~tg~~~~~~~~~~La~~---- 161 (311)
T 3h5d_A 94 FVKEVAEFGGFAAGL-AIVPYYNK-------PSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADH---- 161 (311)
T ss_dssp HHHHHHHSCCCSEEE-EECCCSSC-------CCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHHTS----
T ss_pred HHHHHHHHHCCCCCC-CCCCCCCC-------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC----
T ss_conf 999998863346411-35888889-------899999999999971489968999678634788869999998556----
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH--CCCEEEEEECCCCCCHHHHHH
Q ss_conf 0357677758999516888444220076999999974--890488520577752589886
Q gi|254780791|r 202 EGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN--SSIPIISAIGHETDWTLADYA 259 (529)
Q Consensus 202 ~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~--~~iPVisgIGHE~D~Tl~D~V 259 (529)
+-++-|-=.+| +....+.+.. ..+-|++| ++ ..+.+..
T Consensus 162 -------~~vvgiK~s~~---------~~~~~~~~~~~~~~~~v~~G--~d--~~~~~~~ 201 (311)
T 3h5d_A 162 -------PNIIGVKECTS---------LANMAYLIEHKPEEFLIYTG--ED--GDAFHAM 201 (311)
T ss_dssp -------TTEEEEEECSC---------HHHHHHHHHHCCSSCEEEEC--CG--GGHHHHH
T ss_pred -------CCEEEEECCCC---------HHHHHHHHHHCCCCEEEEEC--CH--HHHHHHH
T ss_conf -------88887642652---------06789999865987268407--35--7676888
No 172
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=65.94 E-value=5.9 Score=17.82 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEE
Q ss_conf 718999997054356888627999874894799999735210586681459889999996675288437999997101
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIP 110 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~ 110 (529)
..|-++|.|..- =||=.|.++|....|..-|=...+......| +++|.+.|+|+-. ..+-.+.|..|+.
T Consensus 38 ~~V~L~G~Iv~~-----l~~d~Y~F~D~TG~I~VeId~~~w~G~~v~p--~~~V~i~GeVDk~--~~~~~IdV~~I~~ 106 (109)
T 1nnx_A 38 TWVTLRGNIVER-----ISDDLYVFKDASGTINVDIDHKRWNGVTVTP--KDTVEIQGEVDKD--WNSVEIDVKQIRK 106 (109)
T ss_dssp EEEEEEEEEEEE-----EETTEEEEEETTEEEEEECCGGGSTTCCCCT--TSCEEEEEEEEEE--TTEEEEEEEEEEE
T ss_pred CEEEEEEEEEEE-----ECCCEEEEECCCCCEEEEECHHHCCCCCCCC--CCEEEEEEEEECC--CCCEEEEEEEEEE
T ss_conf 859998899978-----4894389988997599997834428956599--9989999999089--9965999999998
No 173
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.26.2.4
Probab=65.82 E-value=5.9 Score=17.80 Aligned_cols=53 Identities=8% Similarity=0.102 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHH-HCCHHHHHHHHHHCCCEEEE
Q ss_conf 001111036799999999741003576777589995168-8844422-00769999999748904885
Q gi|254780791|r 180 KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLW-HFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 180 ~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~-~FN~e~laraI~~~~iPVis 245 (529)
.|....+...|+...... ++|+||+++.| +.++.++ .=..+.| |-.|+.||+.
T Consensus 101 ~v~~G~~~~~i~~~a~~~----------~~dliV~G~~~~~~l~~~~~Gs~~~~l---l~~s~~PVlV 155 (163)
T 1tq8_A 101 RPIVGAPVDALVNLADEE----------KADLLVVGNVGLSTIAGRLLGSVPANV---SRRAKVDVLI 155 (163)
T ss_dssp EEECSSHHHHHHHHHHHT----------TCSEEEEECCCCCSHHHHHTBBHHHHH---HHHTTCEEEE
T ss_pred EEECCCHHHHHHHHHHHC----------CCCEEEECCCCCCCCCCCCCCCHHHHH---HHCCCCCEEE
T ss_conf 998278388899998742----------544675447999866557428799999---9708998999
No 174
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA hydration, sodium ION, quadruplex DNA, DNA-binding protein/DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=65.61 E-value=6 Score=17.77 Aligned_cols=70 Identities=6% Similarity=0.048 Sum_probs=49.7
Q ss_pred CEEEEEEECCCCCC-CCCC---EEEEEEECCC-------------CEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEE
Q ss_conf 18999997054356-8886---2799987489-------------4799999735210586681459889999-996675
Q gi|254780791|r 34 HVCVRGEISGYRGI-HSSG---HAYFSLKDNH-------------SRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTF 95 (529)
Q Consensus 34 ~~~v~gEis~~~~~-~~sG---H~Yf~lkd~~-------------a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y 95 (529)
.+-+-|-|..+... ++.| -|.|+++|+. ..++|++|..+...|+.-++.||=|.+. .++..|
T Consensus 51 ~vn~ygVV~d~~~P~~s~gtd~~~tl~IvD~S~~~~~~~~~~~~~~~l~v~lFa~~~e~LP~V~~vGDIIrlhrvki~~~ 130 (495)
T 1jb7_A 51 PQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHRAGDIIRVHRATLRLY 130 (495)
T ss_dssp CEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGSCCCCEETCEEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCCEEEEEEEEEEEE
T ss_conf 37899999653586136897289999998367766554455678887089997489778999688898999988899999
Q ss_pred CCCCEEEEEE
Q ss_conf 2884379999
Q gi|254780791|r 96 PGSSKYQIII 105 (529)
Q Consensus 96 ~~~g~~ql~v 105 (529)
. |..|.+.
T Consensus 131 ~--g~~q~v~ 138 (495)
T 1jb7_A 131 N--GQRQFNA 138 (495)
T ss_dssp T--TEEEEEE
T ss_pred C--CEEEEEE
T ss_conf 8--8667873
No 175
>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Geobacillus stearothermophilus} SCOP: c.89.1.1 PDB: 4pfk_A* 6pfk_A 1mto_A*
Probab=65.07 E-value=6.1 Score=17.69 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=50.7
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEE----------------ECCCCCC----------------CHHHH
Q ss_conf 28999847-842589999998630---597589997----------------2100111----------------10367
Q gi|254780791|r 146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIF----------------PVKVQGD----------------ECPKE 189 (529)
Q Consensus 146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~----------------p~~vQG~----------------~a~~~ 189 (529)
|||||+|| -.++++...++-+-+ ..+.+++-+ +..|.+- .....
T Consensus 2 krIaIltsGG~~pG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~~~~~~~~~~gGs~lgssR~~~~~~~~~ 81 (319)
T 3pfk_A 2 KRIGVLTSGGDSPGMNAAIRSVVRKAIYHGVEVYGVYHGYAGLIAGNIKKLEVGDVGDIIHRGGTILYTARCPEFKTEEG 81 (319)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHHHHHHTTCEEEEESSHHHHHHTTCEEEECGGGGTTCTTCCSCTTCCCCCGGGSSHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 88999886887577999999999999977999999841669766899524998989889855975004588885432126
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf 999999997410035767775899951688844422007699999997489048852057775258
Q gi|254780791|r 190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL 255 (529)
Q Consensus 190 i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl 255 (529)
.-++++.+.+.+ .|.+|++=|-||..- |..+.+..+|| .||-.-+|--|
T Consensus 82 ~~~~~~~l~~~~-------Id~li~iGG~~s~~~---------a~~L~~~~~~v-igiPkTIDNDl 130 (319)
T 3pfk_A 82 QKKGIEQLKKHG-------IQGLVVIGGDGSYQG---------AKKLTEHGFPC-VGVPGTIDNDI 130 (319)
T ss_dssp HHHHHHHHHHHT-------CCEEEEEECHHHHHH---------HHHHHHTTCCE-EEEEBCSSCCC
T ss_pred HHHHHHHHHHHC-------CCEEEEECCHHHHHH---------HHHHHHCCCCE-EEEECCCCCCC
T ss_conf 999999999715-------775999888589999---------99997069846-73300126887
No 176
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=64.44 E-value=5.1 Score=18.37 Aligned_cols=187 Identities=8% Similarity=-0.067 Sum_probs=82.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCC---CCCCCCCCCC
Q ss_conf 88889862299999999999740-0171899999705435688862799987489479999973521---0586681459
Q gi|254780791|r 8 NSLDHPEYSVSELSYHLKHIVES-NLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTL---NKIEFLPEEG 83 (529)
Q Consensus 8 ~~~~~~~~svs~l~~~i~~~l~~-~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~---~~~~~~~~~G 83 (529)
|+.++|.| +++...|...+.. .| ++-+. .++... ...-.+.-.+.. ..+.++++-+.. ..+....+.|
T Consensus 7 p~~~~~f~--~~li~gi~~~a~~~gy-~l~~~--~~~~~~-~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~ 78 (276)
T 2h0a_A 7 PFVATEFY--RRLVEGIEGVLLEQRY-DLALF--PILSLA-RLKRYLENTTLA--YLTDGLILASYDLTERFEEGRLPTE 78 (276)
T ss_dssp CCSCCHHH--HHHHHHHHHHHGGGTC-EEEEC--CCCSCC-CCC-----------CCCSEEEEESCCCC------CCSCS
T ss_pred CCCCCHHH--HHHHHHHHHHHHHCCC-EEEEE--ECCCCH-HHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 88878899--9999999999998699-89999--789987-999999999985--5999899954779989999986439
Q ss_pred CEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHH------
Q ss_conf 88999999667528843799999710168007999999999976540122610016310265289998478425------
Q gi|254780791|r 84 IEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGA------ 157 (529)
Q Consensus 84 ~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a------ 157 (529)
+-|++.+ .+.+... .+ .++..-.| +..-+.|.+.| .++|+++......
T Consensus 79 iPvV~~~---~~~~~~~--~V--~~D~~~a~------~~~~~~L~~~g-------------~~~i~~i~~~~~~~~~~~~ 132 (276)
T 2h0a_A 79 RPVVLVD---AQNPRYD--SV--YLDNRLGG------RLAGAYLARFP-------------GPIFAIAVEEEPDRAFRRT 132 (276)
T ss_dssp SCEEEES---SCCTTSE--EE--EECSHHHH------HHHHHHHTTSS-------------SCEEEEEECCSCCC---CC
T ss_pred CCEEEEE---ECCCCCC--EE--EECCHHHH------HHHHHHHHHCC-------------CCEEEEEECCCCCCHHHHH
T ss_conf 9489994---1368889--89--95658999------99999998718-------------9626998247875012304
Q ss_pred H----HHHHHHHHHHCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH--
Q ss_conf 8----999999863059-758999721001111036799999999741003576777589995168884442200769--
Q gi|254780791|r 158 V----IRDILQRISCRF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE-- 230 (529)
Q Consensus 158 ~----~~D~~~~~~~r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e-- 230 (529)
+ +.=|.+.+.+.. ++.. ...+.|.....+...+++.+-... +++|+|+. .||.
T Consensus 133 ~~~~R~~Gf~~a~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~aii~------------~~d~~a 192 (276)
T 2h0a_A 133 VFAERMAGFQEALKEAGRPFSP---DRLYITRHSQEGGRLALRHFLEKA-----SPPLNVFA------------GADQVA 192 (276)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCG---GGEEEECSSHHHHHHHHHHHHTTC-----CSSEEEEC------------SSHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHC-----CCCCEEEE------------CCHHHH
T ss_conf 8999999999999980999771---011111111157999999988635-----67768996------------777999
Q ss_pred -HHHHHHHHCCC--E---EEEEEC
Q ss_conf -99999974890--4---885205
Q gi|254780791|r 231 -MIVRAIANSSI--P---IISAIG 248 (529)
Q Consensus 231 -~laraI~~~~i--P---VisgIG 248 (529)
.+.+++.++.+ | -|.|+.
T Consensus 193 ~g~~~al~~~g~~vp~~i~vvg~D 216 (276)
T 2h0a_A 193 LGVLEEAVRLGLTPGRDVRVLGFD 216 (276)
T ss_dssp HHHHHHHHTTSCTTTTSEEEEEES
T ss_pred HHHHHHHHHCCCCCCCCCCEEECC
T ss_conf 999999998699889653114227
No 177
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=64.38 E-value=6.2 Score=17.59 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=56.8
Q ss_pred HCCCCCCCCCC----CCCCCEEEEEECCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 12261001631----0265289998478425899999986305-975899972100111103679999999974100357
Q gi|254780791|r 131 GLFSDQHKNPI----PFIPKIIAVITSPTGAVIRDILQRISCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRT 205 (529)
Q Consensus 131 Glfd~~~k~~l----P~~p~~i~vits~~~a~~~D~~~~~~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~ 205 (529)
|++++..+..+ +.-|-+||+||- +|+.-..++..+.++ +++...+ . =|..+--+....++++....
T Consensus 131 G~i~~~~~~~~~~~~~~~~G~ialvsq-SG~l~~~i~~~~~~~g~G~s~~v---s-~Gn~~~v~~~d~l~~l~~D~---- 201 (457)
T 2csu_A 131 GIMNTHVDLNATFITVAKKGNVAFISQ-SGALGAGIVYKTIKEDIGFSKFI---S-VGNMADVDFAELMEYLADTE---- 201 (457)
T ss_dssp EEEEGGGTEEEESSCCCEECSEEEEES-CHHHHHHHHHHHHHTTCEESEEE---E-CTTCCSSCHHHHHHHHTTCS----
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEE---E-CCCCCCCCHHHHHHHHCCCC----
T ss_conf 630663124665443169997799966-72599999999996488814898---3-48867878899999960699----
Q ss_pred CCCCCEEEEE-CCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 6777589995-16888444220076999999974890488520577752
Q gi|254780791|r 206 CPRPDIIILA-RGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDW 253 (529)
Q Consensus 206 ~~~~D~iii~-RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~ 253 (529)
...+|++. =|.+.-+. | ...+|.....+-||+--+| -++.
T Consensus 202 --~t~~I~l~~E~~~~~~~---f--~~aa~~a~~~kpvvvlk~G-rs~~ 242 (457)
T 2csu_A 202 --EDKAIALYIEGVRNGKK---F--MEVAKRVTKKKPIIALKAG-KSES 242 (457)
T ss_dssp --SCCEEEEEESCCSCHHH---H--HHHHHHHHHHSCEEEEECC-----
T ss_pred --CCCEEEEEEECCCCHHH---H--HHHHHHHHCCCCEEEEECC-CCCC
T ss_conf --87479999955755789---9--9999998668998999577-7765
No 178
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis}
Probab=63.78 E-value=6.4 Score=17.50 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHH-HHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 777589995168884442200769-99999974890488520577752
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDE-MIVRAIANSSIPIISAIGHETDW 253 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e-~laraI~~~~iPVisgIGHE~D~ 253 (529)
..||+|+|.-|.|...||+.=.+- .+++..++..- +|.+|.|-.-.
T Consensus 104 ~~ydav~~pGG~g~~~dl~~~~~l~~li~~~~~~~k-~vaaICHGpa~ 150 (247)
T 3n7t_A 104 HDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGG-VIGAVCHGPAM 150 (247)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTC-EEEEETTGGGG
T ss_pred HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEECHHHHH
T ss_conf 677889947987567602440789999999996499-09997416799
No 179
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=63.67 E-value=6.4 Score=17.49 Aligned_cols=80 Identities=10% Similarity=-0.050 Sum_probs=34.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHH--HCCCEEEEEEECCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 2899984784258999999863--05975899972100111----10367999999997410035767775899951688
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRIS--CRFPLRVIIFPVKVQGD----ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~--~r~p~~~~~~p~~vQG~----~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
.+||||+..++..-..+-+.++ +.|+++|.+.+..--.. +.+++=++.|..+-. .+.+|+|+-+|||-
T Consensus 18 d~I~iiAPSs~~~~e~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agt~~~Ra~dl~~a~~------dp~i~aI~~~rGG~ 91 (311)
T 1zl0_A 18 GRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFD------MPDITAVWCLRGGY 91 (311)
T ss_dssp SEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHH------STTEEEEEESCCSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHHHH------CCCCCEEEECCCCC
T ss_conf 999999589988999999999999968999986766000258656999999999998854------88988899856632
Q ss_pred CHHHHHHCCHHH
Q ss_conf 844422007699
Q gi|254780791|r 220 SIEDLWHFNDEM 231 (529)
Q Consensus 220 S~eDL~~FN~e~ 231 (529)
..-.|-.+=|++
T Consensus 92 ga~rlL~~LD~~ 103 (311)
T 1zl0_A 92 GCGQLLPGLDWG 103 (311)
T ss_dssp CGGGGTTTCCHH
T ss_pred CHHHHCCCCCHH
T ss_conf 465641343433
No 180
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=63.38 E-value=6.5 Score=17.45 Aligned_cols=133 Identities=19% Similarity=0.149 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHH
Q ss_conf 00799999999997654012261001631026528999847842589999998630597-58999721001111036799
Q gi|254780791|r 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIA 191 (529)
Q Consensus 113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~ 191 (529)
.|++....+.+.+.|.-.| +=.|.-.-|-.+.+.|+...- +.---.....+.+ ..+.+.+.---=..+.++.+
T Consensus 110 ~~~l~~ai~~~~~~l~i~~-----~VlP~t~~~v~l~a~~~~G~~-i~gq~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (341)
T 2p0y_A 110 KSGVFDAVQELSNMMQVDG-----HVYPAANEALTLHGKFSDGTE-LVGEAEITAAHKSLERVWVTDKNGKEPQAVQPVI 183 (341)
T ss_dssp --CHHHHHHHHHHHTTCSS-----EEECC----CCEEECCSSCC------------CCCCCCEEEC------CCCCHHHH
T ss_pred CCCHHHHHHHHHHHHCCCC-----EEEECCCCCEEEEEEECCCCE-EEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 4998899999999858995-----799366886689999669989-9868989750565535899877888887783689
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCE--EEEEECC---CC-CCHHHHHHHCCC
Q ss_conf 999999741003576777589995168884442200769999999748904--8852057---77-525898864123
Q gi|254780791|r 192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIP--IISAIGH---ET-DWTLADYAADLR 263 (529)
Q Consensus 192 ~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iP--VisgIGH---E~-D~Tl~D~VAD~R 263 (529)
+||+. -|+||++=|-==..=+-.+--..+..||.+++-| .|+-++- || .+|++|+|.-+-
T Consensus 184 ~aI~~------------AD~IiigPGs~ytSI~P~Llv~gi~~ai~~s~a~kv~V~Nl~t~~gET~g~s~~d~v~~i~ 249 (341)
T 2p0y_A 184 DAIMA------------ADQIVLGPGSLFTSILPNLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFSDADHVRVLN 249 (341)
T ss_dssp HHHHH------------CSEEEECSSCCCCCCHHHHSSHHHHHHHHHCSSEEEEECCSBC--CCSTTCBHHHHHHHHH
T ss_pred HHHHC------------CCEEEECCCCCHHHHCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99966------------9989998997065540041666799999868998999978889875557999999999999
No 181
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=62.89 E-value=6.6 Score=17.38 Aligned_cols=88 Identities=19% Similarity=0.328 Sum_probs=50.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHH---------CCCEEEEEEECC----CCCCCHHHHHHHHHHHH-HHHCCCCCCCCCCE
Q ss_conf 28999847842589999998630---------597589997210----01111036799999999-74100357677758
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISC---------RFPLRVIIFPVK----VQGDECPKEIANAILQL-NTLKEGRTCPRPDI 211 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~---------r~p~~~~~~p~~----vQG~~a~~~i~~ai~~~-~~~~~~~~~~~~D~ 211 (529)
++||||..-+-+|=-||.+.+.+ .+| .+++|... .+|.....++...+... +.+.. ..+|+
T Consensus 2 k~IGIIGGmgp~at~~~~~~i~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~L~~----~g~~~ 76 (226)
T 2zsk_A 2 KKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYP-ELIIYSINFKEFFQNPEGWEGRKKILINAAKALER----AGAEL 76 (226)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCC-CEEEEECCTHHHHTCTTHHHHHHHHHHHHHHHHHH----HTCSE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHH----CCCCE
T ss_conf 77999507587999999999999868762887788-58998078022011478876999999999999998----69999
Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 999516888444220076999999974890488520
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI 247 (529)
|+|+=--.| +++++ + -..+++|+|.-|
T Consensus 77 iviaCNTah----~~~~~--l---~~~~~ipii~ii 103 (226)
T 2zsk_A 77 IAFAANTPH----LVFDD--V---QREVNVPMVSII 103 (226)
T ss_dssp EEESSSGGG----GGHHH--H---HHHCSSCBCCHH
T ss_pred EEEECCHHH----HHHHH--H---HHHCCCCCCCCH
T ss_conf 998360888----87999--9---986599943442
No 182
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=62.86 E-value=6.6 Score=17.37 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=48.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
+.|-||-..++=.+ -+.+.+++ .+.++.++|.- +... +.++.+ .+|.||+.=|+|+.+|.+
T Consensus 2 ~~~liiD~~dsft~-Nl~~~l~~-lG~~~~v~~~d---~~~~----~~~~~~----------~~~gvilsgGp~~p~~~~ 62 (195)
T 1qdl_B 2 DLTLIIDNYDSFVY-NIAQIVGE-LGSYPIVIRND---EISI----KGIERI----------DPDRLIISPGPGTPEKRE 62 (195)
T ss_dssp CEEEEEECSCSSHH-HHHHHHHH-TTCEEEEEETT---TSCH----HHHHHH----------CCSEEEECCCSSCTTSHH
T ss_pred CEEEEEECCCCHHH-HHHHHHHH-CCCEEEEEECC---CCCH----HHHHHC----------CCCEEEECCCCCCCCCCC
T ss_conf 88999978871799-99999986-89927998089---8999----999861----------989799889999743343
Q ss_pred HCCHHHHHHHHHHCCCEEE
Q ss_conf 0076999999974890488
Q gi|254780791|r 226 HFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 226 ~FN~e~laraI~~~~iPVi 244 (529)
...........+...+||+
T Consensus 63 ~~~~~~~i~~~~~~~~PiL 81 (195)
T 1qdl_B 63 DIGVSLDVIKYLGKRTPIL 81 (195)
T ss_dssp HHTTHHHHHHHHTTTSCEE
T ss_pred CCCCCHHHHHHHCCCCCEE
T ss_conf 3443089999855899889
No 183
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=62.46 E-value=6.7 Score=17.32 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHHHH-HHC
Q ss_conf 3679999999974100357677758999516888444220076999999974----89048852057775258988-641
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN----SSIPIISAIGHETDWTLADY-AAD 261 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~D~-VAD 261 (529)
+.+|++++... ++|+|.+.=.-+.-.+ +-..++..+-+ -++||+.| |--.+--+++. =||
T Consensus 128 ~e~l~~~~~~~----------~~~~v~lS~~~~~~~~----~~~~~i~~l~~~~~~~~v~i~vG-G~~~~~~~a~~~GaD 192 (210)
T 1y80_A 128 PGKFVEAVKKY----------QPDIVGMSALLTTTMM----NMKSTIDALIAAGLRDRVKVIVG-GAPLSQDFADEIGAD 192 (210)
T ss_dssp HHHHHHHHHHH----------CCSEEEEECCSGGGTH----HHHHHHHHHHHTTCGGGCEEEEE-STTCCHHHHHHHTCS
T ss_pred HHHHHHHHHHC----------CCCEEEEEEECCCCHH----HHHHHHHHHHHCCCCCCCEEEEE-CCCCCHHHHHHHCCC
T ss_conf 99999999852----------9999999843567799----99999999998489999969998-920899999993998
Q ss_pred CCCCCCHHHHHHH
Q ss_conf 2377721456763
Q gi|254780791|r 262 LRAPTPTGAAEMA 274 (529)
Q Consensus 262 ~Ra~TPTaAAEla 274 (529)
.-+++++.|.+++
T Consensus 193 ~~a~da~~av~~a 205 (210)
T 1y80_A 193 GYAPDAASATELC 205 (210)
T ss_dssp EECSSHHHHHHHH
T ss_pred EEECCHHHHHHHH
T ss_conf 8978999999999
No 184
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=62.08 E-value=6.8 Score=17.27 Aligned_cols=67 Identities=15% Similarity=0.075 Sum_probs=43.6
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCCHHH--------HHHHCCCCCCCHHHHHHHC
Q ss_conf 7775899951688844422007699---9999974890488520577752589--------8864123777214567633
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDWTLA--------DYAADLRAPTPTGAAEMAV 275 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~Tl~--------D~VAD~Ra~TPTaAAElav 275 (529)
.+||+|+|.-|.|...||+ +++. +++.+++..-| |.+|.|-.=.-+. -++++.++-.-|.+-|..+
T Consensus 97 ~~ydav~ipGG~g~~~dl~--~~~~l~~~~~~~~~~~k~-v~aiChgp~~L~~~~~~~~g~~ll~Gk~vT~f~~~eE~~~ 173 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYP--KAKDLQDIASEIYANGGV-VAAVCHGPAIFDGLTDKKTGRPLIEGKSITGFTDVGETIL 173 (243)
T ss_dssp GGEEEEEECCSTTHHHHGG--GCHHHHHHHHHHHHTTCE-EEEETTGGGGGTTCBCTTTSSBTTTTCEECCSCHHHHHHT
T ss_pred HHCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHCCCC-EEEECCHHHHHHHHHCCCCCCCEECCCEEECCCCHHHHHC
T ss_conf 6786899569960376624--302455999999976993-6886121688875320566775325867833798898623
Q ss_pred C
Q ss_conf 2
Q gi|254780791|r 276 P 276 (529)
Q Consensus 276 p 276 (529)
.
T Consensus 174 ~ 174 (243)
T 1rw7_A 174 G 174 (243)
T ss_dssp T
T ss_pred C
T ss_conf 5
No 185
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure initiative; 2.00A {Rhodopseudomonas palustris}
Probab=62.04 E-value=5.4 Score=18.18 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHCCCEEEEEE-CCCCC-CHHHHHHHCCCCCCCHH
Q ss_conf 999999974890488520-57775-25898864123777214
Q gi|254780791|r 230 EMIVRAIANSSIPIISAI-GHETD-WTLADYAADLRAPTPTG 269 (529)
Q Consensus 230 e~laraI~~~~iPVisgI-GHE~D-~Tl~D~VAD~Ra~TPTa 269 (529)
..+.+.|..||.|||++| ||=.- =...=+.+|+|..++.+
T Consensus 96 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a 137 (275)
T 3hin_A 96 HRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASA 137 (275)
T ss_dssp HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTC
T ss_pred HHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCHHHHHC
T ss_conf 999999971899889998687742889999822613375523
No 186
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=61.89 E-value=6.8 Score=17.24 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=63.7
Q ss_pred CEEEEEEECCCCCC---CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 47999997352105---866814598899999966752884379999971016800799999999997654012261001
Q gi|254780791|r 62 SRIDAIIWKGTLNK---IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHK 138 (529)
Q Consensus 62 a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k 138 (529)
..++++++-..... +....+.|..|++.|....- ....+- .++..... ..+..-+.|.+.|.
T Consensus 67 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~-~~~~~~----~v~~d~~~----a~~~~~~~L~~~G~------ 131 (295)
T 3hcw_A 67 RMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSD-IDHQFT----HIDNDNIL----ASENLTRHVIEQGV------ 131 (295)
T ss_dssp TCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCCCSS-GGGGSC----EEEECHHH----HHHHHHHHHHHHCC------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCC-CCCCEE----EECCCHHH----HHHHHHHHHHHCCC------
T ss_conf 8998899976656609999999759988998314777-887656----98366899----99999999997298------
Q ss_pred CCCCCCCCEEEEEECCCHHHH-HHHH----HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 631026528999847842589-9999----98630597589997210011110367999999997410035767775899
Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVI-RDIL----QRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII 213 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~~a~~-~D~~----~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii 213 (529)
++|++|+.+..... ++.. ..+++ +++++.+..+.- +.....+..+++...... .+.+|+|+
T Consensus 132 -------~~i~~i~~~~~~~~~~~r~~gf~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~aii 197 (295)
T 3hcw_A 132 -------DELIFITEKGNFEVSKDRIQGFETVASQ-FNLDYQIIETSN-EREVILNYMQNLHTRLKD-----PNIKQAII 197 (295)
T ss_dssp -------SEEEEEEESSCCHHHHHHHHHHHHHHHH-TTCEEEEEEECS-CHHHHHHHHHHHHHHHTC-----TTSCEEEE
T ss_pred -------CCEEEECCCCCCHHHHHHHHHHHHHHHH-CCCCCCEEECCC-CCHHHHHHHHHHHHHHCC-----CCCCCCCC
T ss_conf -------7567754874315788888999999997-699942443256-603566777777776414-----77764345
Q ss_pred EECCCCCHHHHHHCCHHH---HHHHHHHC--CCE-EEEEECCCCCCHHHHHH
Q ss_conf 951688844422007699---99999748--904-88520577752589886
Q gi|254780791|r 214 LARGGGSIEDLWHFNDEM---IVRAIANS--SIP-IISAIGHETDWTLADYA 259 (529)
Q Consensus 214 i~RGGGS~eDL~~FN~e~---laraI~~~--~iP-VisgIGHE~D~Tl~D~V 259 (529)
|+||.. +++++.+. .+| =|+=||+. |..++++.
T Consensus 198 ------------~~~d~~a~g~~~~l~~~g~~ip~dv~vvg~d-~~~~~~~~ 236 (295)
T 3hcw_A 198 ------------SLDAMLHLAILSVLYELNIEIPKDVMTATFN-DSYLTEIA 236 (295)
T ss_dssp ------------ESSHHHHHHHHHHHHHTTCCTTTTEEEEEEC-CSHHHHTS
T ss_pred ------------CCCHHHHHHHHHHHHHCCCCCCCCCCEEECC-CHHHHHHC
T ss_conf ------------5778999999999998699889461444148-86899713
No 187
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase, structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=61.53 E-value=6.9 Score=17.19 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHH
Q ss_conf 9999998630597-589997210011110367999999997410035767775899951688844422007699999997
Q gi|254780791|r 159 IRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIA 237 (529)
Q Consensus 159 ~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~ 237 (529)
++-+..++...+| ..|+||.+.+-|+.-+.| .+|+.|+..+.-+.++++ .+...+.
T Consensus 14 l~~I~~il~~~~~~~~v~LFGS~A~G~~~~~S------------------DIDl~I~~~~~~~~~~~~-----~l~~~l~ 70 (114)
T 1no5_A 14 LAIVKTILQQLVPDYTVWAFGSRVKGKAKKYS------------------DLDLAIISEEPLDFLARD-----RLKEAFS 70 (114)
T ss_dssp HHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTC------------------CEEEEEECSSCCCHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC------------------CCCEEEEECCCCCHHHHH-----HHHHHHH
T ss_conf 99999999983899789998987789868899------------------867899838999999999-----9999998
Q ss_pred HCCCE
Q ss_conf 48904
Q gi|254780791|r 238 NSSIP 242 (529)
Q Consensus 238 ~~~iP 242 (529)
++.+|
T Consensus 71 e~~~~ 75 (114)
T 1no5_A 71 ESDLP 75 (114)
T ss_dssp HSCCS
T ss_pred HCCCC
T ss_conf 51899
No 188
>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=61.46 E-value=6.9 Score=17.18 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHHHHHHCCCEEEEE
Q ss_conf 99999997489048852
Q gi|254780791|r 230 EMIVRAIANSSIPIISA 246 (529)
Q Consensus 230 e~laraI~~~~iPVisg 246 (529)
.++.+-+....+||+|.
T Consensus 51 ~e~~~~~~~~~iPv~tT 67 (174)
T 1ytl_A 51 FERVKKFVEKDITVVAT 67 (174)
T ss_dssp HHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHHCCCEEEC
T ss_conf 99999999869699962
No 189
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, ligase; HET: EPE; 2.30A {Sulfolobus tokodaii str}
Probab=61.30 E-value=7 Score=17.16 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=52.4
Q ss_pred CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC-CCCCCCCCCCEEEEEEEEEEECCCC--EEEEEEEEEE
Q ss_conf 718999997054356888627999874894799999735210-5866814598899999966752884--3799999710
Q gi|254780791|r 33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLN-KIEFLPEEGIEFLVIGKITTFPGSS--KYQIIIESLI 109 (529)
Q Consensus 33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~-~~~~~~~~G~~v~~~g~~~~y~~~g--~~ql~v~~i~ 109 (529)
..|.|.|=|.+.|. .++-++++|.|..+.+.|++=+.... ..--.+..|+-|-|.|.+. -.++| +..+.|..+.
T Consensus 17 ~~V~v~Gwv~~~R~--~gk~~Fi~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G~v~-~~~~~~~~~e~~~~~i~ 93 (429)
T 1wyd_A 17 KEVIWAGWVHLLRD--LGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRGIVK-ADKRAPRGIELHAEEIT 93 (429)
T ss_dssp CEEEEEEEEEEEEE--ETTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEE-ECSSSGGGEEEEEEEEE
T ss_pred CEEEEEEEEEEEEC--CCCCEEEEEEECCCCEEEEEECCCCHHHHHHCCCCCEEEEEEEEEE-CCCCCCCCEEEEEECCE
T ss_conf 98999999898987--8980999999388158999948930078994589954999997997-88889876699741002
Q ss_pred E
Q ss_conf 1
Q gi|254780791|r 110 P 110 (529)
Q Consensus 110 ~ 110 (529)
.
T Consensus 94 ~ 94 (429)
T 1wyd_A 94 L 94 (429)
T ss_dssp E
T ss_pred E
T ss_conf 3
No 190
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, PSI-2, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=61.06 E-value=6.9 Score=17.22 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
-.+||||..+... .-.+ -.++. .+|++ .-+.++.++|+.+-... ++-+|+| .|++
T Consensus 9 s~~IaVIGd~dtv------~GFr-LaGi~-~v~~v-----~~~ee~~~~l~~ll~~~------~~gII~I------te~~ 63 (102)
T 2i4r_A 9 SHMLAVVGDPDFT------IGFM-LAGIS-DIYEV-----TSDEEIVKAVEDVLKRD------DVGVVIM------KQEY 63 (102)
T ss_dssp CCEEEEEECHHHH------HHHH-HTTCC-CEEEC-----CSHHHHHHHHHHHHHCS------SEEEEEE------EGGG
T ss_pred CEEEEEEECHHHH------HHHH-HCCCC-CEECC-----CCHHHHHHHHHHHHCCC------CEEEEEE------EHHH
T ss_conf 1699999488988------9899-82887-20568-----99899999999996079------8589997------1899
Q ss_pred HHCCHHHHHHHHHHCCCEEEEEE-CCCCCCHHHHHH
Q ss_conf 20076999999974890488520-577752589886
Q gi|254780791|r 225 WHFNDEMIVRAIANSSIPIISAI-GHETDWTLADYA 259 (529)
Q Consensus 225 ~~FN~e~laraI~~~~iPVisgI-GHE~D~Tl~D~V 259 (529)
+.--.+.+-+.+.++.+|+|.-| |.+-...+-|.|
T Consensus 64 ~~~i~~~l~~~~~~~~~P~ii~IP~~~g~~~i~e~I 99 (102)
T 2i4r_A 64 LKKLPPVLRREIDEKVEPTFVSVGGTGGVEEIREKI 99 (102)
T ss_dssp STTSCHHHHTTTTTCCSSEEEEEC------------
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 988689999997578855799969988984288886
No 191
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=61.02 E-value=7 Score=17.12 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 89999998630597-5899972100111103679999999974100357677758999516888
Q gi|254780791|r 158 VIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 158 ~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
++.++...++..|| .++.+|.+.+-|-.-+.+ ++|+.|..+.++.
T Consensus 45 i~~~l~~~i~~~~p~~~v~~fGS~~tgl~l~~S------------------DiDl~v~~~~~~~ 90 (323)
T 3nyb_A 45 TISTIREAVKQLWPDADLHVFGSYSTDLYLPGS------------------DIDCVVTSELGGK 90 (323)
T ss_dssp HHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTS------------------CEEEEECSSCCGG
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC------------------CEEEEEECCCCCH
T ss_conf 999999999988899889996572017999697------------------8068871577644
No 192
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=60.94 E-value=2.6 Score=20.99 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HHHHHCC--------------HHHHHHHHHHCCCEEEEEE
Q ss_conf 1036799999999741003576777589995168884---4422007--------------6999999974890488520
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---EDLWHFN--------------DEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eDL~~FN--------------~e~laraI~~~~iPVisgI 247 (529)
....++..+|+.++... .+.+|||.=.|+.+ -||-.|. -..+...+..||.|||.+|
T Consensus 39 ~~~~~l~~~l~~~~~d~------~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIa~v 112 (258)
T 3lao_A 39 AMLADLALAMGEYERSE------ESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAV 112 (258)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHCC------CCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999999997399------965999977998661587466525333035677665333489999873899889998
Q ss_pred -CCCC-CCHHHHHHHCCCCCCCHH
Q ss_conf -5777-525898864123777214
Q gi|254780791|r 248 -GHET-DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 248 -GHE~-D~Tl~D~VAD~Ra~TPTa 269 (529)
||=. -=.-.=+.+|+|..|+.+
T Consensus 113 ~G~a~GgG~~lal~~D~~ia~~~a 136 (258)
T 3lao_A 113 QGTCWTAGIELMLNADIAVAARGT 136 (258)
T ss_dssp CSEEETHHHHHHHTSSEEEEETTC
T ss_pred ECEEECCCCHHHHCCCHHHHHHCC
T ss_conf 182603764431033522130136
No 193
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=60.94 E-value=7.1 Score=17.11 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=46.2
Q ss_pred CCCCEEEEEEEEEEEC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH-CC
Q ss_conf 2884379999971016----800799999999997654012261001631026528999847842589999998630-59
Q gi|254780791|r 96 PGSSKYQIIIESLIPS----GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISC-RF 170 (529)
Q Consensus 96 ~~~g~~ql~v~~i~~~----g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~-r~ 170 (529)
+..|.|-..+. .+.. ...+|...|+++-+++..+ -+...+.-|+||+|.-|..|..++|++...+. ..
T Consensus 43 ~~~~~FFmR~~-f~~~~~~~~~~~l~~~f~~~~~~f~m~------~~~~~~~~~~riailvSg~g~~l~~ll~~~~~g~L 115 (288)
T 3obi_A 43 TESGHFFMRVV-FNAAAKVIPLASLRTGFGVIAAKFTMG------WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDL 115 (288)
T ss_dssp TTTTEEEEEEE-EEESSCCCCHHHHHHHHHHHHHHTTCE------EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSS
T ss_pred CCCCEEEEEEE-EECCCCCCCHHHHHHHHHHHHHHHCCC------CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 88880899999-963888789999999888777651553------11245456735999994783389999999974999
Q ss_pred CEEE
Q ss_conf 7589
Q gi|254780791|r 171 PLRV 174 (529)
Q Consensus 171 p~~~ 174 (529)
|.+|
T Consensus 116 ~~~i 119 (288)
T 3obi_A 116 HMIP 119 (288)
T ss_dssp CEEE
T ss_pred CCEE
T ss_conf 8437
No 194
>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum}
Probab=60.59 E-value=7.1 Score=17.07 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=10.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8889862299999999999740
Q gi|254780791|r 9 SLDHPEYSVSELSYHLKHIVES 30 (529)
Q Consensus 9 ~~~~~~~svs~l~~~i~~~l~~ 30 (529)
++++|- .+++...++..++.
T Consensus 17 ~~~~~f--~~~~~~~i~~~a~~ 36 (293)
T 3l6u_A 17 NDKHEF--AQRLINAFKAEAKA 36 (293)
T ss_dssp CSCSHH--HHHHHHHHHHHHHH
T ss_pred CCCCHH--HHHHHHHHHHHHHH
T ss_conf 899989--99999999999998
No 195
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=60.57 E-value=7.2 Score=17.06 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=61.4
Q ss_pred CCCCEEEEEECCC-------------HHHHHHHHHHHHH----CC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 2652899984784-------------2589999998630----59-7589997210011110367999999997410035
Q gi|254780791|r 143 FIPKIIAVITSPT-------------GAVIRDILQRISC----RF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGR 204 (529)
Q Consensus 143 ~~p~~i~vits~~-------------~a~~~D~~~~~~~----r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~ 204 (529)
.+-+||-||-.|+ ..-+.|+-+.+.. +. .+++..|-+-.-| +|+..|..+....
T Consensus 12 ~m~~kILIinGPNLNlLG~Re~~iYG~~TL~~i~~~~~~~a~~~~~~ie~~~~QSN~Eg-----elId~Iq~~~~~~--- 83 (167)
T 3kip_A 12 QLVKKVLLINGPNLNLLGTREPEKYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEG-----FIIDRIHEAKRQG--- 83 (167)
T ss_dssp -CCCEEEEEECTTGGGTTCC----CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHH-----HHHHHHHHHHHTT---
T ss_pred HHHCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHH-----HHHHHHHHHHHCC---
T ss_conf 86360799828881105887887578468999999999999985589755075416389-----9999999963458---
Q ss_pred CCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 76777589995168884442200769999999748904885
Q gi|254780791|r 205 TCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 205 ~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+|.|||-=|| |.-=+..+-.|+..+++|+|-
T Consensus 84 ----~~gIIiNpga------~THtSiai~DAL~~~~~P~iE 114 (167)
T 3kip_A 84 ----VGFVVINAGA------YTHTSVGIRDALLGTAIPFIE 114 (167)
T ss_dssp ----CCEEEEECGG------GGGTCHHHHHHHHHTTCCEEE
T ss_pred ----CEEEEECCCH------HEEEHHHHHHHHHHCCCCEEE
T ss_conf ----2489835410------112011169899854998899
No 196
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.15A {Colwellia psychrerythraea 34H}
Probab=60.17 E-value=7.2 Score=17.01 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=47.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
+||-|| .+......+++.+-+++++.+.. +.|. +|+..+.. ..||+||+=- +|=
T Consensus 4 ~rILIV--DDd~~~~~~l~~~L~~~g~~v~a----~~~~-------eal~~l~~-------~~~dlillD~------~mP 57 (135)
T 3eqz_A 4 NRVFIV--DDDTLTCNLLKTIVEPIFGNVEA----FQHP-------RAFLTLSL-------NKQDIIILDL------MMP 57 (135)
T ss_dssp CEEEEE--CSCHHHHHHHHHHHTTTCSCEEE----ESCH-------HHHTTSCC-------CTTEEEEEEC------CTT
T ss_pred CEEEEE--ECCHHHHHHHHHHHHHCCCEEEE----CCHH-------HHHHHHHC-------CCCCEEEEEC------CCC
T ss_conf 999999--29999999999999978998999----1789-------99999865-------8999999859------999
Q ss_pred HCCHHHHHHHHHHC----CCEEEEEECCCCCC
Q ss_conf 00769999999748----90488520577752
Q gi|254780791|r 226 HFNDEMIVRAIANS----SIPIISAIGHETDW 253 (529)
Q Consensus 226 ~FN~e~laraI~~~----~iPVisgIGHE~D~ 253 (529)
-.|-.++++.|.+. |++++||.+-....
T Consensus 58 ~~dG~el~~~lr~~~~~~~iiils~~~~~~~~ 89 (135)
T 3eqz_A 58 DMDGIEVIRHLAEHKSPASLILISGYDSGVLH 89 (135)
T ss_dssp TTHHHHHHHHHHHTTCCCEEEEEESSCHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCCCCCH
T ss_conf 99899999999952999979999835765440
No 197
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=60.14 E-value=7.3 Score=17.00 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=49.8
Q ss_pred HHHHHHHH---HHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf 99999986---305975899972100111103679999999974100357677758999516888444220076999999
Q gi|254780791|r 159 IRDILQRI---SCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529)
Q Consensus 159 ~~D~~~~~---~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529)
+.|+...+ .....+++..|-+=..| ++++.|..+.. ..+|.|||-=|| |..-...+-.|
T Consensus 26 L~~i~~~~~~~a~~~g~~l~~~QSN~Eg-----elid~I~~a~~-------~~~dgiIiNPga------~ThtS~al~DA 87 (149)
T 2uyg_A 26 LEELEALCEAWGAELGLGVVFRQTNYEG-----QLIEWVQQAHQ-------EGFLAIVLNPGA------LTHYSYALLDA 87 (149)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCHH-----HHHHHHHHTTT-------TTCSEEEEECGG------GGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHH-----HHHHHHHHHCC-------CCCEEEEECCCH------HHHHHHHHHHH
T ss_conf 9999999999999759947898547788-----89999998322-------562179975522------32010149999
Q ss_pred HHHCCCEEEE
Q ss_conf 9748904885
Q gi|254780791|r 236 IANSSIPIIS 245 (529)
Q Consensus 236 I~~~~iPVis 245 (529)
+..+++|+|-
T Consensus 88 l~~~~~P~iE 97 (149)
T 2uyg_A 88 IRAQPLPVVE 97 (149)
T ss_dssp HHTSCSCEEE
T ss_pred HHHCCCCEEE
T ss_conf 9835999899
No 198
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, nicotine degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=59.50 E-value=6.6 Score=17.39 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 62299999999999740017189999
Q gi|254780791|r 14 EYSVSELSYHLKHIVESNLSHVCVRG 39 (529)
Q Consensus 14 ~~svs~l~~~i~~~l~~~~~~~~v~g 39 (529)
|-|+.|+...|+-.-+... .|.++|
T Consensus 45 P~s~~~V~~~v~~A~~~~~-~v~~rg 69 (459)
T 2bvf_A 45 CLSAGDVAKSVRYACDNGL-EISVRS 69 (459)
T ss_dssp CCSHHHHHHHHHHHHHHTC-CEEEES
T ss_pred CCCHHHHHHHHHHHHHCCC-EEEEEC
T ss_conf 5999999999999998798-299988
No 199
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=59.19 E-value=2.5 Score=21.11 Aligned_cols=29 Identities=7% Similarity=0.279 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHH-CCCCEEEEEEECCC
Q ss_conf 299999999999740-01718999997054
Q gi|254780791|r 16 SVSELSYHLKHIVES-NLSHVCVRGEISGY 44 (529)
Q Consensus 16 svs~l~~~i~~~l~~-~~~~~~v~gEis~~ 44 (529)
.+.+|...+...-+. +..-|.+.|+=..|
T Consensus 35 ~~~~L~~al~~~~~d~~vr~vVltg~g~~F 64 (725)
T 2wtb_A 35 VLYNLKSNYEEALSRNDVKAIVITGAKGRF 64 (725)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEESSSCC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 999999999999658997699998889980
No 200
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isoprenoid biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=59.19 E-value=7.5 Score=16.88 Aligned_cols=117 Identities=19% Similarity=0.274 Sum_probs=66.5
Q ss_pred HCCCCCCCCCCCCCCCEEEEEECC----CHHHHHHHHHHHH--HCCCEEEEEEECC---------CCCCCHHHHHHHHHH
Q ss_conf 122610016310265289998478----4258999999863--0597589997210---------011110367999999
Q gi|254780791|r 131 GLFSDQHKNPIPFIPKIIAVITSP----TGAVIRDILQRIS--CRFPLRVIIFPVK---------VQGDECPKEIANAIL 195 (529)
Q Consensus 131 Glfd~~~k~~lP~~p~~i~vits~----~~a~~~D~~~~~~--~r~p~~~~~~p~~---------vQG~~a~~~i~~ai~ 195 (529)
|-+.....+|.+ +..++|||=|- +|.=+....-++- +|.++++.++--- .-|+... +-...+.
T Consensus 10 ~~~~~~~~~p~~-~~m~~aviLsGcG~~DGsEi~Eav~~l~~L~raG~~v~~~aPd~~q~~vv~H~~g~~~~-~~Rnvl~ 87 (242)
T 3l3b_A 10 GTLEAQTQGPGS-MALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVG-EVRNILV 87 (242)
T ss_dssp ---------------CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEES-CCCBHHH
T ss_pred CCHHHCCCCCCC-CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCCC-CCCCCCC
T ss_conf 310103689710-10446999808978674229799999999998899799994698755125615887132-4554211
Q ss_pred HHHH--------HCCCCCCCCCCEEEEECCCCCHHHHHHC----------CH--HHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9974--------1003576777589995168884442200----------76--9999999748904885205777
Q gi|254780791|r 196 QLNT--------LKEGRTCPRPDIIILARGGGSIEDLWHF----------ND--EMIVRAIANSSIPIISAIGHET 251 (529)
Q Consensus 196 ~~~~--------~~~~~~~~~~D~iii~RGGGS~eDL~~F----------N~--e~laraI~~~~iPVisgIGHE~ 251 (529)
...+ +.+. ....||+|||-=|-|...+|+-| |. ..++|..++..-|| .+|.|-.
T Consensus 88 esariarg~i~~l~ev-~~~dyDaliiPGG~g~a~nL~~~~~~~~~~~~~~~~v~~li~~f~~~~Kpi-aaIC~aP 161 (242)
T 3l3b_A 88 ESARIARGSVYDIEQI-RVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPI-GAVCISP 161 (242)
T ss_dssp HHHHHTTTCEEEGGGC-CGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCE-EEETTHH
T ss_pred CCCCCCCCCCCCHHHC-CCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCE-EEECHHH
T ss_conf 4553246787857788-941289899889767887777766518314102389999999999879979-9987769
No 201
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=58.74 E-value=7.6 Score=16.82 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCC--HHHHHHHHHHCCCEEEEEECC
Q ss_conf 1110367999999997410035767775899951688844422007--699999997489048852057
Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFN--DEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN--~e~laraI~~~~iPVisgIGH 249 (529)
+.....+|++..... ++|+||+++.|.+.-.=+.|. .+.|++ .|+.||+.-=++
T Consensus 96 ~~~~~~~i~~~a~~~----------~~DLiV~G~~~~~~~~~~~~gS~~~~ll~---~~~~PVlvv~~~ 151 (319)
T 3olq_A 96 HNRPYEAIIEEVITD----------KHDLLIKMAHQHDKLGSLIFTPLDWQLLR---KCPAPVWMVKDK 151 (319)
T ss_dssp CSCHHHHHHHHHHHH----------TCSEEEEEEBCC--CCSCBCCHHHHHHHH---HCSSCEEEEESS
T ss_pred CCCHHHHHHHHHHHC----------CCCEEEECCCCCCCHHHHHCCCHHHHHHH---HCCCCEEEEEEE
T ss_conf 688589999999965----------98889741568763123304407899997---379978999864
No 202
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=58.35 E-value=7.7 Score=16.77 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=50.3
Q ss_pred CEEEEEECCCHHHHHHHH-----HHHHHC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----E
Q ss_conf 289998478425899999-----986305-97-589997210011110367999999997410035767775899----9
Q gi|254780791|r 146 KIIAVITSPTGAVIRDIL-----QRISCR-FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII----L 214 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~-----~~~~~r-~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii----i 214 (529)
.||+||.|.==..+-|-+ ..+... .. ++++-.| |. -||--+++.+.+ +||.+| |
T Consensus 18 ~rI~IV~s~~n~~I~~~Ll~ga~~~l~~~g~~~~~v~~VP----Ga---~EiP~~~~~l~~--------~~DavIaLG~V 82 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVL----GA---IEIPVVAQELAR--------NHDAVVALGVV 82 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEES----SG---GGHHHHHHHHHT--------SCSEEEEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC----CH---HHHHHHHHHHHH--------HCCCEEEEEEE
T ss_conf 9899997348899999999999999987799811799818----67---689999999864--------23774899999
Q ss_pred ECCCCCHHHHHHCCHHHHHHHHH----HCCCEEEEEEC
Q ss_conf 51688844422007699999997----48904885205
Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIA----NSSIPIISAIG 248 (529)
Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~----~~~iPVisgIG 248 (529)
+||.=.--|+.| ..+++.|. +..+||+.||=
T Consensus 83 IkGeT~H~e~I~---~~v~~gl~~lsl~~~~PI~~GIL 117 (160)
T 2c92_A 83 IRGQTPHFDYVC---DAVTQGLTRVSLDSSTPIANGVL 117 (160)
T ss_dssp ECCSSTHHHHHH---HHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EECCCCHHHHHH---HHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 947971789999---99999999998515997699867
No 203
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=58.27 E-value=7.7 Score=16.76 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=44.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHC--CCEEEEEEECC-CCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CC
Q ss_conf 5289998478425899999986305--97589997210-01111--0367999999997410035767775899951-68
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCR--FPLRVIIFPVK-VQGDE--CPKEIANAILQLNTLKEGRTCPRPDIIILAR-GG 218 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r--~p~~~~~~p~~-vQG~~--a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GG 218 (529)
|+-|+|+|+-.+.-++|=+.-+.+. -++.|+.++++ .+|.. .....+.+|-.--. ......++..+.|++- -+
T Consensus 86 P~~I~V~tTC~selIGDDi~~v~~~~~~~~pvi~v~tpgf~g~~~~G~~~a~~alv~~l~-~~~~~~~~~~vniig~~~~ 164 (525)
T 3aek_B 86 PQAMAVALTCTAELLQDDPNGISRALNLPVPVVPLELPSYSRKENYGADETFRALVRALA-VPMERTPEVTCNLLGATAL 164 (525)
T ss_dssp CSEEEEEECTTGGGSCCCHHHHHHHHTCSSCEEECCCCTTTCCHHHHHHHHHHHHHHHHC-CCCCCCSSCEEEEEEECTT
T ss_pred CCEEEEECCCHHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCEECCCCC
T ss_conf 989999777659886589999999837999879987899777530699999999999844-7657888876536241488
Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf 88444220076999999974890488520577752589886
Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529)
Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529)
| -.|.=|-.++-|-+..+-+.|.+-+.. +.|+.|+.
T Consensus 165 ~---f~~~~D~~EikrLL~~~Gi~vn~~~p~--g~s~~di~ 200 (525)
T 3aek_B 165 G---FRHRDDVAEVTKLLATMGIKVNVCAPL--GASPDDLR 200 (525)
T ss_dssp C---TTHHHHHHHHHHHHHTTTCEEEEEEET--TCCHHHHH
T ss_pred C---CCCCCHHHHHHHHHHHCCCCEEEECCC--CCCHHHHH
T ss_conf 7---777204999999999769934897589--99979998
No 204
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=57.61 E-value=7.9 Score=16.68 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=59.7
Q ss_pred EEEEECCCHHHHHHH----HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 999847842589999----9986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r 148 IAVITSPTGAVIRDI----LQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 148 i~vits~~~a~~~D~----~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
..|++.+.|. +||+ +..+-++.+++++...+ +..+++++.++... ++|+|.|. +-+.-.
T Consensus 94 ~vl~~~~~gd-~H~lG~~~va~~l~~~G~~V~~LG~----~~p~e~~~~~~~~~----------~~d~v~ls--~S~~~~ 156 (215)
T 3ezx_A 94 LAITFVAEGD-IHDIGHRLVTTMLGANGFQIVDLGV----DVLNENVVEEAAKH----------KGEKVLLV--GSALMT 156 (215)
T ss_dssp EEEEEECTTC-CCCHHHHHHHHHHHHTSCEEEECCS----SCCHHHHHHHHHHT----------TTSCEEEE--EECSSH
T ss_pred CEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEECCC----CCCHHHHHHHHHHC----------CCCEEEEE--EECCCC
T ss_conf 4699854898-8889999999999977996998889----99999999999973----------99814899--856654
Q ss_pred HHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHHHHH-HCCCCCCCHHHHHHH
Q ss_conf 220076999999974----890488520577752589886-412377721456763
Q gi|254780791|r 224 LWHFNDEMIVRAIAN----SSIPIISAIGHETDWTLADYA-ADLRAPTPTGAAEMA 274 (529)
Q Consensus 224 L~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~D~V-AD~Ra~TPTaAAEla 274 (529)
=-..+-..+++.+-+ ..+||+.| |-=+|--+++.+ ||.=+++|..|.+++
T Consensus 157 ~~~~~~~~~i~~lr~~~~~~~v~v~vG-Ga~~~~~~a~~~GAD~~a~da~~Av~~a 211 (215)
T 3ezx_A 157 TSMLGQKDLMDRLNEEKLRDSVKCMFG-GAPVSDKWIEEIGADATAENAAEAAKVA 211 (215)
T ss_dssp HHHTHHHHHHHHHHHTTCGGGSEEEEE-SSSCCHHHHHHHTCCBCCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEE-CCCCCHHHHHHHCCCEECCCHHHHHHHH
T ss_conf 336999999999998088899959988-9027999999839887838999999999
No 205
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=57.53 E-value=7.9 Score=16.67 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=42.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH---
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844---
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE--- 222 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e--- 222 (529)
.+||||.=+ | .++..++.+++ ..+++.+... +.+ ..++|.||| =||+|-.
T Consensus 2 ~kIGvl~~~-G-n~~s~~~al~~-~g~~~~~i~~-------~~~----------------l~~~d~lIl-PGg~~~~~~~ 54 (196)
T 2nv0_A 2 LTIGVLGLQ-G-AVREHIHAIEA-CGAAGLVVKR-------PEQ----------------LNEVDGLIL-PGGESTTMRR 54 (196)
T ss_dssp CEEEEECSS-S-CCHHHHHHHHH-TTCEEEEECS-------GGG----------------GGGCSEEEE-CCSCHHHHHH
T ss_pred CEEEEEECC-C-CHHHHHHHHHH-CCCCEEEECC-------HHH----------------HHCCCEEEE-CCCCCHHHHH
T ss_conf 499999458-8-29999999998-8992999999-------899----------------825998998-9960078888
Q ss_pred HHHHCCHHHHHHHHHHCCCEEE
Q ss_conf 4220076999999974890488
Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 223 DL~~FN~e~laraI~~~~iPVi 244 (529)
.|+..+..+..+.......|++
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pil 76 (196)
T 2nv0_A 55 LIDTYQFMEPLREFAAQGKPMF 76 (196)
T ss_dssp HHHHTTCHHHHHHHHHTTCCEE
T ss_pred HHHHCCCHHHHHHHHHCCCCEE
T ss_conf 7543682899999996499889
No 206
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.48 E-value=4.4 Score=18.95 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHCCCE-EEEE----EECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 5899999986305975-8999----72100111103679999999974100357677758999516888444220
Q gi|254780791|r 157 AVIRDILQRISCRFPL-RVII----FPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 157 a~~~D~~~~~~~r~p~-~~~~----~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
+=...|-+.|..--++ .+.+ --+.|.|.-.+.+|+++|+.+ .|+++++.-|+...+++|+
T Consensus 31 ~C~~~I~~al~~l~GV~~v~Vdl~~~~v~V~~~~~~~~I~~~I~~~----------Gy~a~l~~~g~~~~~~~g~ 95 (98)
T 2crl_A 31 SCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGT----------GRQAVLKGMGSGQLQNSGP 95 (98)
T ss_dssp HHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTT----------TSCEEEEESCCCCCCCCSC
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHH----------CCCEEEECCCCCCCCCCCC
T ss_conf 9999999998668990599998889999998739999999999985----------9988993389875546787
No 207
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=56.98 E-value=8.1 Score=16.60 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999974
Q gi|254780791|r 18 SELSYHLKHIVE 29 (529)
Q Consensus 18 s~l~~~i~~~l~ 29 (529)
.++...|+..++
T Consensus 29 ~~~i~~i~~~~~ 40 (292)
T 3k4h_A 29 PEVIRGISSFAH 40 (292)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 208
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=56.95 E-value=8.1 Score=16.59 Aligned_cols=152 Identities=16% Similarity=0.068 Sum_probs=65.5
Q ss_pred CEEEEEEECCCCCCCC-CCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4799999735210586-681459889999996675288437999997101680079999999999765401226100163
Q gi|254780791|r 62 SRIDAIIWKGTLNKIE-FLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNP 140 (529)
Q Consensus 62 a~i~~~~~~~~~~~~~-~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~ 140 (529)
..++++++-+...... ..-..|.-|++.++ +.+...+..+ ..+.... -..+-+.|.+.|.
T Consensus 62 ~~vdgiIi~~~~~~~~~~~~~~~iPvV~~~~---~~~~~~~~~V--~~d~~~~------~~~~~~~l~~~G~-------- 122 (288)
T 2qu7_A 62 QNVSAIILVPVKSKFQMKREWLKIPIMTLDR---ELESTSLPSI--TVDNEEA------AYIATKRVLESTC-------- 122 (288)
T ss_dssp TTEEEEEECCSSSCCCCCGGGGGSCEEEESC---CCSSCCCCEE--EECHHHH------HHHHHHHHHTSSC--------
T ss_pred CCCCEEEECCCCHHHHHHHHHCCCCEEEEEC---CCCCCCCCEE--EECCHHH------HHHHHHHHHHCCC--------
T ss_conf 6998899747412679999746998897302---4788989889--9687899------9999999986498--------
Q ss_pred CCCCCCEEEEEECCCHH-HHHHH----HHHHHHCC----CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 10265289998478425-89999----99863059----75899972100111103679999999974100357677758
Q gi|254780791|r 141 IPFIPKIIAVITSPTGA-VIRDI----LQRISCRF----PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDI 211 (529)
Q Consensus 141 lP~~p~~i~vits~~~a-~~~D~----~~~~~~r~----p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ 211 (529)
++|++|+...+. ...+. ...+++.. +..+...+....... ....+.+.+..+.. ..+|+
T Consensus 123 -----~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~----~~~~a 190 (288)
T 2qu7_A 123 -----KEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNA---QIYSGYEATKTLLS----KGIKG 190 (288)
T ss_dssp -----CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHH---HHHHHHHHHHHHHH----TTCCE
T ss_pred -----CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCHHH---HHHHHHHHHHHHHH----HCCCC
T ss_conf -----5157863774433014545417999998699988231787213442367---78999999999741----00334
Q ss_pred EEEECCCCCHHHHHHCCHHH---HHHHHHHCCC--E---EEEEECCCCCCHHHHHH
Q ss_conf 99951688844422007699---9999974890--4---88520577752589886
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEM---IVRAIANSSI--P---IISAIGHETDWTLADYA 259 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~---laraI~~~~i--P---VisgIGHE~D~Tl~D~V 259 (529)
++|.||.. +.++..++.+ | .|.|.+ |..++++.
T Consensus 191 ------------i~~~~d~~a~g~~~~l~~~g~~vp~dv~VigfD---~~~~~~~~ 231 (288)
T 2qu7_A 191 ------------IVATNHLLLLGALQAIKESEKEIKKDVIIVGFD---DSYWNEIY 231 (288)
T ss_dssp ------------EEECSHHHHHHHHHHHHHSSCCBTTTBEEEEES---CCTHHHHS
T ss_pred ------------CCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEC---CHHHHHHC
T ss_conf ------------556788989869999998699889871799978---86999723
No 209
>1ylq_A Putative nucleotidyltransferase, hypothetical protein AF0614; structural genomics, PSI, protein structure initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=56.93 E-value=8.1 Score=16.59 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 9999998630597-58999721001111036799999999741003576777589995168884442
Q gi|254780791|r 159 IRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 159 ~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
++-|...+++-+| .+|+||.+.+-|+..+. ..++|++||..........
T Consensus 4 lk~I~e~ik~~~~~~kV~LFGS~ArG~~~~~-----------------~SDiDllVV~~~~~~~~~~ 53 (96)
T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYGSVVEGDYSIG-----------------LSDIDVAIVSDVFEDRNRK 53 (96)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHCCSSSC-----------------CCSEEEEEECGGGGSHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-----------------CCCCEEEEEECCCCCHHHH
T ss_conf 9999999998689938999887315899888-----------------8865699996788887899
No 210
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Wolinella succinogenes}
Probab=56.12 E-value=7.2 Score=17.04 Aligned_cols=35 Identities=11% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCHH-HHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 775899951688844-42200769999999748904885
Q gi|254780791|r 208 RPDIIILARGGGSIE-DLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 208 ~~D~iii~RGGGS~e-DL~~FN~e~laraI~~~~iPVis 245 (529)
.+|+||+++.|.+.- .|+.-..+.|++. ++.||+.
T Consensus 101 ~~dliV~G~~~~~~~~~~lGs~~~~v~~~---a~cpVlv 136 (138)
T 3idf_A 101 DYNLLIIGSSENSFLNKIFASHQDDFIQK---APIPVLI 136 (138)
T ss_dssp TCSEEEEECCTTSTTSSCCCCTTCHHHHH---CSSCEEE
T ss_pred CCCEEEEECCCCCCCHHHHCCHHHHHHHH---CCCCEEE
T ss_conf 25589992899995122335699999960---6998999
No 211
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=55.79 E-value=8.4 Score=16.45 Aligned_cols=42 Identities=17% Similarity=0.384 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHCCCCCCCHHH--HHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 775258988641237772145--6763323467776699999888
Q gi|254780791|r 250 ETDWTLADYAADLRAPTPTGA--AEMAVPVKEHLQSSLINLEARL 292 (529)
Q Consensus 250 E~D~Tl~D~VAD~Ra~TPTaA--AElavp~~~EL~~~L~~l~~RL 292 (529)
++|+.+|-- -|.=..-||++ -.++-....++..+|.++...|
T Consensus 31 ~~~~~~c~d-~d~g~~cp~gcrmq~llde~~qdl~~ri~~Lq~~L 74 (491)
T 1m1j_A 31 EKNWPICVD-DDWGTKCPSGCRMQGIIDDTDQNYSQRIDNIRQQL 74 (491)
T ss_dssp TTCCCBCCT-TSTTTEECCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCC-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778997752-00167686477899999998799999999999999
No 212
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=55.69 E-value=8.4 Score=16.43 Aligned_cols=85 Identities=21% Similarity=0.260 Sum_probs=46.8
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 65289998478425899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
+.+||-|| .+-..+.+++..+=+.+++++.... +-..|++.+... .||+||+=-.
T Consensus 2 M~~rILiV--DDd~~~~~~l~~~L~~~g~~v~~a~----------~g~~al~~l~~~-------~~dlvl~D~~------ 56 (136)
T 1mvo_A 2 MNKKILVV--DDEESIVTLLQYNLERSGYDVITAS----------DGEEALKKAETE-------KPDLIVLDVM------ 56 (136)
T ss_dssp CCCEEEEE--CSCHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHHHH-------CCSEEEEESS------
T ss_pred CCCCEEEE--ECCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEECCC------
T ss_conf 88878999--8999999999999998899999989----------999999998845-------9989982699------
Q ss_pred HHHCCHHHHHHHHHH----CCCEEEEEECCCCCCHH
Q ss_conf 220076999999974----89048852057775258
Q gi|254780791|r 224 LWHFNDEMIVRAIAN----SSIPIISAIGHETDWTL 255 (529)
Q Consensus 224 L~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl 255 (529)
|=..|-.++++.+-. .||+++|| |....+.
T Consensus 57 mP~~~G~el~~~ir~~~~~~~ii~lT~--~~~~~~~ 90 (136)
T 1mvo_A 57 LPKLDGIEVCKQLRQQKLMFPILMLTA--KDEEFDK 90 (136)
T ss_dssp CSSSCHHHHHHHHHHTTCCCCEEEEEC--TTCCCCH
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEEC--CCCHHHH
T ss_conf 999988999999985499985999978--7999999
No 213
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=55.59 E-value=8.4 Score=16.42 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=58.0
Q ss_pred CEEEEEECCC-------------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2899984784-------------2589999998630---59758999721001111036799999999741003576777
Q gi|254780791|r 146 KIIAVITSPT-------------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529)
Q Consensus 146 ~~i~vits~~-------------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529)
++|.||-.|+ .--+.|+...++. ...+++..|-+-..| +|++.|.... ..+
T Consensus 2 ~kILiinGPNLNlLG~Re~~iYG~~TL~~i~~~l~~~a~~~~i~l~~~QSN~Eg-----elId~I~~~~--------~~~ 68 (154)
T 1uqr_A 2 KKILLLNGPNLNMLGKREPHIYGSQTLSDIEQHLQQSAQAQGYELDYFQANGEE-----SLINRIHQAF--------QNT 68 (154)
T ss_dssp CEEEEEECTTGGGTTCSSGGGTTCCCHHHHHHHHHHHHHHTTCEEEEEECSSHH-----HHHHHHHHTT--------TTC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHH-----HHHHHHHHHH--------CCC
T ss_conf 779998188801057889976885589999999999999739835441131299-----9999999975--------367
Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 589995168884442200769999999748904885
Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
|-|||-=|| |..-+..+..|+..+++|+|-
T Consensus 69 dgiIiNpga------~ThtS~al~DAl~~~~~P~iE 98 (154)
T 1uqr_A 69 DFIIINPGA------FTHTSVAIRDALLAVSIPFIE 98 (154)
T ss_dssp CEEEEECTT------HHHHCHHHHHHHHHHTCCEEE
T ss_pred CEEEECCCC------CEEEHHHHHHHHHHCCCCEEE
T ss_conf 789972763------031037899999854998899
No 214
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 1ojx_A 1ok4_A 1ok6_A
Probab=55.26 E-value=8.5 Score=16.38 Aligned_cols=93 Identities=12% Similarity=0.189 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHH--HCCCEEEEEEECCC----CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCC
Q ss_conf 4258999999863--05975899972100----11110367999999997410035767775899951688844422007
Q gi|254780791|r 155 TGAVIRDILQRIS--CRFPLRVIIFPVKV----QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFN 228 (529)
Q Consensus 155 ~~a~~~D~~~~~~--~r~p~~~~~~p~~v----QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN 228 (529)
...-+.++-+... ++|.+.++++|-+. -.+..+.-|..+.+.+-.+. .|+|=+- |+.+
T Consensus 120 e~~~l~~~a~v~~e~~~~glP~~~e~~p~g~~~~~~~~~e~v~~aaRia~ELG-------ADiiK~~---------~~g~ 183 (263)
T 1w8s_A 120 EWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELG-------ADAMKIK---------YTGD 183 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHT-------CSEEEEE---------CCSS
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-------CCEEEEE---------CCCC
T ss_conf 79999999999999998099379876644886446677789999999999839-------9846533---------7998
Q ss_pred HHHHHHHHH-HCCCEEEEEECCC--CCCHHHHHHHCCC
Q ss_conf 699999997-4890488520577--7525898864123
Q gi|254780791|r 229 DEMIVRAIA-NSSIPIISAIGHE--TDWTLADYAADLR 263 (529)
Q Consensus 229 ~e~laraI~-~~~iPVisgIGHE--~D~Tl~D~VAD~R 263 (529)
.+...+.|. .|++||+-+-|=- +|..+..+|.+.-
T Consensus 184 ~~~~~~~v~~a~~~PVli~GG~~~~~~~~~l~~v~~a~ 221 (263)
T 1w8s_A 184 PKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVL 221 (263)
T ss_dssp HHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 79888888714677668963898899999999999999
No 215
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=55.13 E-value=8.6 Score=16.36 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=53.0
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEE-------------------ECCCCC-----C-----------
Q ss_conf 6528999847-842589999998630---597589997-------------------210011-----1-----------
Q gi|254780791|r 144 IPKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIF-------------------PVKVQG-----D----------- 184 (529)
Q Consensus 144 ~p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~-------------------p~~vQG-----~----------- 184 (529)
.-+||||+|| -.+.|+...++-+-+ ...++|+-+ ...|.| -
T Consensus 180 ~~KrIaIlTSGGdaPGmNaaIr~vv~~a~~~g~~V~Gi~~Gy~GL~~g~~~~i~~l~~~~v~~~~~~GGt~LGSsR~~~~ 259 (941)
T 3opy_B 180 VRKTIGVMTSGGDSPGMNPFVRAVVRAGIYKGCKVFCIHEGYEGLVRGGEKYIKETQWHDVRGWLVEGGTNIGTARCKEF 259 (941)
T ss_dssp CCCCEEEEECSSCCTTHHHHHHHHHHHHHHTTCCEEEETTHHHHHHHCSTTTEEEECGGGGTTTTTCCSCSSCCCCCSGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 67689998978786438899999999998689899998534587614986554338999983276279726404889876
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH------------HHHH--HHHHCCCEEEEEEC
Q ss_conf 1036799999999741003576777589995168884442200769------------9999--99748904885205
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE------------MIVR--AIANSSIPIISAIG 248 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e------------~lar--aI~~~~iPVisgIG 248 (529)
.......++++.+...+ .|.+|++=|-||..--..|.+| .+.. .-..+.||||-=.|
T Consensus 260 ~~~~~~~~~~~~L~~~~-------Id~LvvIGGDGSl~gA~~L~~e~~~~~~el~~~~~i~~~~~~~~~~i~VvGIPk 330 (941)
T 3opy_B 260 RERSGRLKACKNMIDMG-------IDALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVG 330 (941)
T ss_dssp GSHHHHHHHHHHHHHHT-------CCEEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHCC-------CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 78778999999999869-------998999898158999999987634433443222246688875279955999646
No 216
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485}
Probab=54.90 E-value=8.6 Score=16.33 Aligned_cols=31 Identities=16% Similarity=0.452 Sum_probs=16.1
Q ss_pred CEEEEEEECCCCCC---CCCCCCCCCEEEEEEEE
Q ss_conf 47999997352105---86681459889999996
Q gi|254780791|r 62 SRIDAIIWKGTLNK---IEFLPEEGIEFLVIGKI 92 (529)
Q Consensus 62 a~i~~~~~~~~~~~---~~~~~~~G~~v~~~g~~ 92 (529)
-+++++|+-+.... +..--+.|.-|++.++.
T Consensus 63 ~~vDGiIv~~~~~~~~~~~~l~~~~iPvV~i~~~ 96 (287)
T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGRS 96 (287)
T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 8987899978989989999999679979998876
No 217
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=54.87 E-value=7.3 Score=16.99 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHH-CCCC-EEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCC-CC--CCCCCCCEEEEEEE
Q ss_conf 99999999999740-0171-89999970543568886279998748947999997352105-86--68145988999999
Q gi|254780791|r 17 VSELSYHLKHIVES-NLSH-VCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNK-IE--FLPEEGIEFLVIGK 91 (529)
Q Consensus 17 vs~l~~~i~~~l~~-~~~~-~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~-~~--~~~~~G~~v~~~g~ 91 (529)
.+++...|...++. ++.. +.+... ..... ..+..+. ....+.++|+-+.... .. .....+.-|++.|+
T Consensus 27 ~~~~~~gi~~~~~~~g~~~~l~~~~~----~~d~~--~~~~~~~-~~~~vdgiIv~~~~~~~~~~~~~~~~~iP~V~~~~ 99 (289)
T 3g85_A 27 ISRFLRGLQSKLAKQNYNYNVVICPY----KTDCL--HLEKGIS-KENSFDAAIIANISNYDLEYLNKASLTLPIILFNR 99 (289)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEEEE----CTTCG--GGCGGGS-TTTCCSEEEESSCCHHHHHHHHHCCCSSCEEEESC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCC----CHHHH--HHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECC
T ss_conf 99999999999998699679998689----71099--9999999-85797889977876678999998549972899766
Q ss_pred EEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHH-HHH----HHHHH
Q ss_conf 6675288437999997101680079999999999765401226100163102652899984784258-999----99986
Q gi|254780791|r 92 ITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAV-IRD----ILQRI 166 (529)
Q Consensus 92 ~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~-~~D----~~~~~ 166 (529)
+.+. +..+ .+|....|.+ .-+.|.+.| -++||+|+++...- .++ |...+
T Consensus 100 ---~~~~--~~~V--~~D~~~a~~~------a~~~L~~~G-------------~r~i~~i~~~~~~~~~~~R~~gf~~a~ 153 (289)
T 3g85_A 100 ---LSNK--YSSV--NVDNYKMGEK------ASLLFAKKR-------------YKSAAAILTESLNDAMDNRNKGFIETC 153 (289)
T ss_dssp ---CCSS--SEEE--EECHHHHHHH------HHHHHHHTT-------------CCBCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred ---CCCC--CCEE--EECCHHHHHH------HHHHHHHCC-------------CCCEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---8899--9989--9787999999------999999749-------------973411456767838999986003678
Q ss_pred HHCC-CE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH---HHHHHHHHC--
Q ss_conf 3059-75-8999721001111036799999999741003576777589995168884442200769---999999748--
Q gi|254780791|r 167 SCRF-PL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE---MIVRAIANS-- 239 (529)
Q Consensus 167 ~~r~-p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e---~laraI~~~-- 239 (529)
++.. ++ ...+ +.|+.....-..++..+-.. .+.+|+|+. .||. .+.+++.+.
T Consensus 154 ~~~g~~~~~~~i----~~~~~~~~~~~~~~~~~l~~-----~~~~~aii~------------~~d~~a~g~~~al~~~g~ 212 (289)
T 3g85_A 154 HKNGIKISENHI----IAAENSIHGGVDAAKKLMKL-----KNTPKALFC------------NSDSIALGVISVLNKRQI 212 (289)
T ss_dssp HHTTCBCCGGGE----EECCSSHHHHHHHHHHHTTS-----SSCCSEEEE------------SSHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCCEE----EECCCCCHHHHHHHHHHHHC-----CCCCCEEEC------------CCHHHHHHHHHHHHHCCC
T ss_conf 872998663147----40443213578988877631-----788654331------------784999999999998798
Q ss_pred CCE--E-EEEECCCCCCHHHHHHH
Q ss_conf 904--8-85205777525898864
Q gi|254780791|r 240 SIP--I-ISAIGHETDWTLADYAA 260 (529)
Q Consensus 240 ~iP--V-isgIGHE~D~Tl~D~VA 260 (529)
.+| | |..||+. |..++++..
T Consensus 213 ~vP~DisV~~igfd-d~~~~~~~~ 235 (289)
T 3g85_A 213 SIPDDIEIVAIGMN-DREYTEFST 235 (289)
T ss_dssp CTTTTCEEEEEECS-CHHHHHSSS
T ss_pred CCCCCEEEEEECCC-CHHHHHHCC
T ss_conf 66962399984779-779996158
No 218
>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=54.77 E-value=8.7 Score=16.32 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=19.0
Q ss_pred CCCEEEEECCCCCHHH--H--HHCCHHHHHHHHHHCCCEEE
Q ss_conf 7758999516888444--2--20076999999974890488
Q gi|254780791|r 208 RPDIIILARGGGSIED--L--WHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 208 ~~D~iii~RGGGS~eD--L--~~FN~e~laraI~~~~iPVi 244 (529)
.||.|||.=|.+|.-| - |--++..+.+.+.+..+||+
T Consensus 57 ~~D~lii~GGp~~~~~~~~~p~~~~~~~li~~~~~~~~PiL 97 (239)
T 1o1y_A 57 EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFL 97 (239)
T ss_dssp GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEE
T ss_pred HCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 28989988999877777668212999999999997699999
No 219
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=54.39 E-value=8.8 Score=16.27 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=58.0
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 02652899984784258999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
|...+||-||-. -..+++++...-.++++.+.... +-..|++.+... .||+||+
T Consensus 4 pl~g~kILiVDD--~~~~r~~l~~~L~~~g~~v~~a~----------~g~~Al~~l~~~-------~~dlvi~------- 57 (130)
T 3eod_A 4 PLVGKQILIVED--EQVFRSLLDSWFSSLGATTVLAA----------DGVDALELLGGF-------TPDLMIC------- 57 (130)
T ss_dssp TTTTCEEEEECS--CHHHHHHHHHHHHHTTCEEEEES----------CHHHHHHHHTTC-------CCSEEEE-------
T ss_pred CCCCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEHH-------
T ss_conf 889998999969--89999999999998899999989----------999999998528-------9887457-------
Q ss_pred HHHH--HCCHHHHHHHHHH--CCCEEEEEECCCCCCHHHH
Q ss_conf 4422--0076999999974--8904885205777525898
Q gi|254780791|r 222 EDLW--HFNDEMIVRAIAN--SSIPIISAIGHETDWTLAD 257 (529)
Q Consensus 222 eDL~--~FN~e~laraI~~--~~iPVisgIGHE~D~Tl~D 257 (529)
|+. ..|-.++++.|-+ ..+|||-=-||....+...
T Consensus 58 -D~~mP~~dG~~~~~~ir~~~~~~piI~lt~~~~~~~~~~ 96 (130)
T 3eod_A 58 -DIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAK 96 (130)
T ss_dssp -CCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHH
T ss_pred -HHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf -421799989999999996098998999989999999999
No 220
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=54.21 E-value=8.8 Score=16.25 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=7.2
Q ss_pred HHHHHHHHCCCEEEE
Q ss_conf 999999748904885
Q gi|254780791|r 231 MIVRAIANSSIPIIS 245 (529)
Q Consensus 231 ~laraI~~~~iPVis 245 (529)
.+.+...+..||||+
T Consensus 73 ~~~~~a~~~giPvV~ 87 (306)
T 8abp_A 73 AIVAKARGYDMKVIA 87 (306)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHCCCCEEE
T ss_conf 999999975997899
No 221
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=54.13 E-value=8.8 Score=16.24 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=53.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC-------EEEEEEECCC----------CCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 28999847842589999998630597-------5899972100----------111103679999999974100357677
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFP-------LRVIIFPVKV----------QGDECPKEIANAILQLNTLKEGRTCPR 208 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p-------~~~~~~p~~v----------QG~~a~~~i~~ai~~~~~~~~~~~~~~ 208 (529)
|+||||..-+-+|=-||.+.+.+..+ ..++++..+. .++.....+.+.++.+...+
T Consensus 2 k~IGIiGG~gp~at~~~~~~i~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g------- 74 (228)
T 1jfl_A 2 KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECG------- 74 (228)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTCCCSSGGGSCCEEEEECTTSCCHHHHHTTSSCCCHHHHHHHHHHHHHHT-------
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC-------
T ss_conf 8899952779799999999999999875588678067786787777889874431569999999999999769-------
Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 758999516888444220076999999974890488520
Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI 247 (529)
+|+|+|+=--.+. +|++ + -..+++|+|+-|
T Consensus 75 ~~~iviaCNTah~----~~~~--l---~~~~~ipii~ii 104 (228)
T 1jfl_A 75 ADFIIMPCNTAHA----FVED--I---RKAIKIPIISMI 104 (228)
T ss_dssp CSEEECSCTGGGG----GHHH--H---HHHCSSCBCCHH
T ss_pred CCEEEEECHHHHH----HHHH--H---HHHCCCCCEEEC
T ss_conf 9999994628999----9999--9---986599935313
No 222
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=53.99 E-value=8.9 Score=16.22 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=27.1
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 28999847-842589999998630---597589997210011110367999999997410035767775899951
Q gi|254780791|r 146 KIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 146 ~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
+.||||.+ .+..-+.+|++.+.+ +.++.+.++++.= -+..-.+.++.+... .+|.||+.=
T Consensus 8 ~~Iglv~~~~~~~f~~~i~~gi~~~~~~~gy~~~l~~~~~----~~~~e~~~i~~l~~~-------~vdgiIi~~ 71 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWN----NLEKQRAYLSMMAQK-------RVDGLLVMC 71 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTT----CHHHHHHHHHHHHHT-------TCSEEEEEC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC----CHHHHHHHHHHHHHC-------CCCEEEEEC
T ss_conf 9799996999888999999999999998699999996899----989999999999855-------988665310
No 223
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=53.98 E-value=8.9 Score=16.22 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=8.4
Q ss_pred HHCCHHHHHCCCE
Q ss_conf 7169677731461
Q gi|254780791|r 450 QSFAYKNTLKRGY 462 (529)
Q Consensus 450 ~slsP~~~L~RGY 462 (529)
+.++|.++|.-|=
T Consensus 546 ~~lDP~~ilNPGv 558 (571)
T 1f0x_A 546 RENDPTNSMNPGI 558 (571)
T ss_dssp HHHCTTCCBSTTT
T ss_pred HHHCCCCCCCCCC
T ss_conf 9829398989998
No 224
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}
Probab=53.81 E-value=8.9 Score=16.20 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=7.4
Q ss_pred HHHHHCCCEEEEEE
Q ss_conf 99974890488520
Q gi|254780791|r 234 RAIANSSIPIISAI 247 (529)
Q Consensus 234 raI~~~~iPVisgI 247 (529)
..+..|++|||++|
T Consensus 123 ~~~~~~~kPvIAAV 136 (556)
T 2w3p_A 123 DSSRHSGLKFLAAV 136 (556)
T ss_dssp HHHHHTSCEEEEEE
T ss_pred HHHHHCCCCEEEEE
T ss_conf 99983899899997
No 225
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=53.66 E-value=9 Score=16.18 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=50.4
Q ss_pred CEEEEEECCCH----HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 28999847842----58999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITSPTG----AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits~~~----a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
-+|||+-+... +++.+.+....+..++++.++.+ +| -+..-.++|+.+-.. ++|.|||+=.-++
T Consensus 3 ~~Ig~~v~~~~~~~~~~~~~~~~~~a~~~G~~~~v~~~--~~--d~~~q~~~i~~li~~-------~vDgIii~~~d~~- 70 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA--NG--NEETQMSQIENMINR-------GVDVLVIIPYNGQ- 70 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC--TT--CHHHHHHHHHHHHHT-------TCSEEEEECSSTT-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CC--CHHHHHHHHHHHHHC-------CCCEEEECCCCHH-
T ss_conf 19999948899989999999999999973998999959--99--999999999999976-------9999998176223-
Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf 4422007699999997489048852
Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisg 246 (529)
.-+.+.+......||||+-
T Consensus 71 ------~~~~~~~~a~~~gipvV~~ 89 (313)
T 3m9w_A 71 ------VLSNVVKEAKQEGIKVLAY 89 (313)
T ss_dssp ------SCHHHHHHHHTTTCEEEEE
T ss_pred ------HHHHHHHHHHHCCCCEEEE
T ss_conf ------1489999999869968970
No 226
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1
Probab=53.58 E-value=8.9 Score=16.21 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=39.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHH-CC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 8999847842589999998630-59-758999721001111036799999999741003576777589995168884442
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISC-RF-PLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~-r~-p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
+||||.-+ |+ +....+.+++ .. ++++.+.. .+.+| . ++|.||| =||||..+=
T Consensus 5 kigvl~~~-Gn-~~~~~~al~~lg~~~~~v~~v~-------~~~~l-------~---------~~d~lIL-PG~gs~~~~ 58 (227)
T 2abw_A 5 TIGVLSLQ-GD-FEPHINHFIKLQIPSLNIIQVR-------NVHDL-------G---------LCDGLVI-PGGESTTVR 58 (227)
T ss_dssp EEEEECTT-SC-CHHHHHHHHTTCCTTEEEEEEC-------SHHHH-------H---------TCSEEEE-CCSCHHHHH
T ss_pred EEEEEECC-CC-HHHHHHHHHHHCCCCCEEEEEC-------CHHHH-------H---------CCCEEEE-CCCCHHHHH
T ss_conf 89999558-86-9999999998378984799949-------98998-------2---------7999999-899659999
Q ss_pred HH--CCH----HHHHHHHHHCCCEEE
Q ss_conf 20--076----999999974890488
Q gi|254780791|r 225 WH--FND----EMIVRAIANSSIPII 244 (529)
Q Consensus 225 ~~--FN~----e~laraI~~~~iPVi 244 (529)
+. ... +.+.+.+.+...||+
T Consensus 59 ~~~~~~~~~~~~~i~~~~~~~~~Pil 84 (227)
T 2abw_A 59 RCCAYENDTLYNALVHFIHVLKKPIW 84 (227)
T ss_dssp HHTTHHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCEE
T ss_conf 99998766777899999985399179
No 227
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=53.56 E-value=9 Score=16.17 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=46.9
Q ss_pred CCCEEEEEECCCHHHHHHHH----HHHHHCCCEEEEEEEC-CCCCC------CHHHHHHHHHHHHHHHCC---CCCCCCC
Q ss_conf 65289998478425899999----9863059758999721-00111------103679999999974100---3576777
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDIL----QRISCRFPLRVIIFPV-KVQGD------ECPKEIANAILQLNTLKE---GRTCPRP 209 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~----~~~~~r~p~~~~~~p~-~vQG~------~a~~~i~~ai~~~~~~~~---~~~~~~~ 209 (529)
-|+-|+|+||..+..++|=+ +.+..+.+..|+.+++ ..+|. .|...|+..+..-..... .....++
T Consensus 88 ~P~~I~V~sTC~selIGdDi~~v~~~~~~~~~~~Vi~v~~~gf~g~~~~G~~~al~~lv~~l~~~~~~~~~~~~~~~~~~ 167 (511)
T 2xdq_B 88 HPDLIVLTPTCTSSILQEDLQNFVRRASLSTTADVLLADVNHYRVNELQAADRTLEQIVQFYIDKARRQGTLGTSKTPTP 167 (511)
T ss_dssp CCSEEEEECCHHHHTTCCCHHHHHHHHHHHCSSEEEECCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCSSC
T ss_pred CCCEEEEECCCCHHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99889993787187746669999998621349956998278867771399999999999999875325677776677887
Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 589995168884442200769999999748904885205
Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIG 248 (529)
.|=||+- .+...-|.=|-.++-|-+..+.+.|..-+.
T Consensus 168 ~VNIlG~--~~l~~~~~~D~~EikrlL~~~Gi~vn~v~p 204 (511)
T 2xdq_B 168 SVNIIGI--TTLGFHNQHDCRELKQLMADLGIQVNLVIP 204 (511)
T ss_dssp EEEEEEE--CTTCTTHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 5441145--578878777899999999976983678679
No 228
>2o2z_A Hypothetical protein; NP_244435.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=53.41 E-value=9 Score=16.15 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=67.9
Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 016310265289998478425899999986305975-8999721001111036799999999741003576777589995
Q gi|254780791|r 137 HKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529)
Q Consensus 137 ~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529)
+=.|...-|-...++|....-..+.. .+-....|. .+.+.|..+ .+..+.++||+. .|+||++
T Consensus 122 ~VlP~td~~v~l~~~~~dG~~~~ge~-~i~~~~~~i~~~~~~~~~~---~~~p~~~~aI~~------------AD~IIig 185 (323)
T 2o2z_A 122 KVLPASNRSIILHGEMEDGTIVTGES-SIPKAGKKIKRVFLTPKDT---KPLREGLEAIRK------------ADVIVIG 185 (323)
T ss_dssp EEEESCSSCCEEEEEETTSCEEESTT-TGGGGCSCEEEEEEESTTC---CCCHHHHHHHHH------------CSEEEEC
T ss_pred EEEECCCCCEEEEEEECCCCEECCCE-EEECCCCCEEEEEECCCCC---CCCHHHHHHHHH------------CCCEEEC
T ss_conf 79857898558999978998744825-4313566217998226666---668899999981------------8907986
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHHCCCEE--EEEECC---C-CCCHHHHHHHCC
Q ss_conf 1688844422007699999997489048--852057---7-752589886412
Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIANSSIPI--ISAIGH---E-TDWTLADYAADL 262 (529)
Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~~~iPV--isgIGH---E-~D~Tl~D~VAD~ 262 (529)
=|-==..=+-.+--..+..||.+++-|+ |+-|+- | ..+++.|+|.-.
T Consensus 186 Pgs~~tSI~P~L~v~gi~~Ai~~s~a~kv~v~ni~~~~gET~g~~~~d~v~~i 238 (323)
T 2o2z_A 186 PGSLYTSVLPNLLVPGICEAIKQSTARKVYICNVMTQNGETDGYTASDHLQAI 238 (323)
T ss_dssp SSCTTTTHHHHHTSTTHHHHHHHCCSEEEEECCSBCCTTTSTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 87408888788442779999876899889995788887533577779999999
No 229
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=53.39 E-value=6.7 Score=17.30 Aligned_cols=53 Identities=17% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH
Q ss_conf 9999986305975-8999721001111036799999999741003576777589995168884442200769
Q gi|254780791|r 160 RDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE 230 (529)
Q Consensus 160 ~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e 230 (529)
.+.+..+..+|++ .+++|.+.+-|+..+.| .+|+.|+.-++-|..+++.+-++
T Consensus 13 ~~~i~~i~~k~~v~~v~LFGS~Arg~~~~~S------------------DIDi~V~~~~~~~~~~~~~l~~~ 66 (98)
T 1wot_A 13 REAVLSLCARHGAVRVRVFGSVARGEAREDS------------------DLDLLVAFEEGRTLLDHARLKLA 66 (98)
T ss_dssp HHHHHHHHHHHTCSSCEECSHHHHTCCCTTC------------------CCEEEECCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCC------------------CCCEEEECCCCCCHHHHHHHHHH
T ss_conf 9999999998399789998887479878999------------------85678861899999999999999
No 230
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=53.29 E-value=9.1 Score=16.14 Aligned_cols=81 Identities=22% Similarity=0.366 Sum_probs=57.0
Q ss_pred CEEEEEECCC-------------HHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2899984784-------------25899999986305---9758999721001111036799999999741003576777
Q gi|254780791|r 146 KIIAVITSPT-------------GAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529)
Q Consensus 146 ~~i~vits~~-------------~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529)
.+|.||-.|+ ..-+.|+...+++. .++++..+-+=..| ++++.|..... .+
T Consensus 29 m~IlVinGPNLNlLG~Rep~iYG~~TL~~i~~~~~~~a~~~g~el~~~QSN~Eg-----elId~Iq~~~~--------~~ 95 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEA-----QLLDWIHQAAD--------AA 95 (172)
T ss_dssp CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHH-----HHHHHHHHHHH--------HT
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH-----HHHHHHHHHCC--------CC
T ss_conf 669998587713268888874884789999999999999829816797346389-----99999998502--------67
Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 589995168884442200769999999748904885
Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
|.|||-=|| |..-...+..|+..+++|+|-
T Consensus 96 dgIIINPga------~ThtS~Al~DAl~~~~~P~IE 125 (172)
T 3n8k_A 96 EPVILNAGG------LTHTSVALRDACAELSAPLIE 125 (172)
T ss_dssp CCEEEECGG------GGGTCHHHHHHHTTCCSCEEE
T ss_pred CEEEECCCH------HHHHHHHHHHHHHHCCCCEEE
T ss_conf 637963503------423449999999835998899
No 231
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=53.25 E-value=4.1 Score=19.24 Aligned_cols=77 Identities=13% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCCEEEEEEECC---CCCCCCCCEEE--EEEE------CCC--------C-EEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 171899999705---43568886279--9987------489--------4-79999973521058668145988999999
Q gi|254780791|r 32 LSHVCVRGEISG---YRGIHSSGHAY--FSLK------DNH--------S-RIDAIIWKGTLNKIEFLPEEGIEFLVIGK 91 (529)
Q Consensus 32 ~~~~~v~gEis~---~~~~~~sGH~Y--f~lk------d~~--------a-~i~~~~~~~~~~~~~~~~~~G~~v~~~g~ 91 (529)
+..|-+.|-|.. ++ +..||-.| |+|- |.+ . -+.|++|+..+..+.-.++-|+.|+|.|+
T Consensus 23 mN~v~LiGrlg~DPelr-~t~sG~~v~~fsvAv~~~~~~~~~~~~~~~t~~~~~v~~~~~~Ae~~~~~l~KG~~V~V~G~ 101 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESK-TMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEGK 101 (169)
T ss_dssp EEEEEEEEEESSCCEEE-ECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEEE
T ss_pred EEEEEEEEECCCCCEEE-ECCCCCEEEEEEEEECCCEECCCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCCEEEEEEE
T ss_conf 47899999867798899-87899879999998714410134310267851899999961477899865024868999968
Q ss_pred EE--EEC-C----CCEEEEEEEEEE
Q ss_conf 66--752-8----843799999710
Q gi|254780791|r 92 IT--TFP-G----SSKYQIIIESLI 109 (529)
Q Consensus 92 ~~--~y~-~----~g~~ql~v~~i~ 109 (529)
+. .|. + +..+.++|+.+.
T Consensus 102 l~~~~~~dkdG~~r~~~eI~a~~~~ 126 (169)
T 3lgj_A 102 LQTRKWQDKNGHDRYTTEIVLPQYK 126 (169)
T ss_dssp EEEECC--------CEEEEEECTTC
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC
T ss_conf 7746788079957999999998403
No 232
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=52.68 E-value=9.3 Score=16.06 Aligned_cols=124 Identities=14% Similarity=0.190 Sum_probs=80.1
Q ss_pred CCCCCCCCC-CCCHHHHHH-----HHHHHHHH---------CCC--CEEEEEEECCCCCCCC--CC----EEEEEEECCC
Q ss_conf 888888898-622999999-----99999740---------017--1899999705435688--86----2799987489
Q gi|254780791|r 5 SQKNSLDHP-EYSVSELSY-----HLKHIVES---------NLS--HVCVRGEISGYRGIHS--SG----HAYFSLKDNH 61 (529)
Q Consensus 5 ~~~~~~~~~-~~svs~l~~-----~i~~~l~~---------~~~--~~~v~gEis~~~~~~~--sG----H~Yf~lkd~~ 61 (529)
..+|+.+.+ |+=|++|+. .+-..++. ++| .|.|.|=|.+.+-... +| -..++|-|..
T Consensus 41 H~aPT~~~~vPlfI~DI~~~~~l~~iyg~l~~~~~~i~f~~N~PI~~VrIvG~VVg~~yk~~~~~~~~~~y~iltIDDsS 120 (220)
T 3kf8_A 41 HQAPTFDKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFI 120 (220)
T ss_dssp GGSTTTTSEEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCC
T ss_pred CCCCCCCCEEEEEEEEHHHCCCHHEECCCHHHCCCCEEEECCCCEEEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECCC
T ss_conf 33755585464788431217412101463664126489998765189999999999998426556666534999995699
Q ss_pred ---CEEEEEEECCCCCCCCCCC---CCCCEEEEEEEEEEEC------CCCEEEEEEEEEEECC--CCHHHHHHHHHHHHH
Q ss_conf ---4799999735210586681---4598899999966752------8843799999710168--007999999999976
Q gi|254780791|r 62 ---SRIDAIIWKGTLNKIEFLP---EEGIEFLVIGKITTFP------GSSKYQIIIESLIPSG--SGTLLTALEKRKKKL 127 (529)
Q Consensus 62 ---a~i~~~~~~~~~~~~~~~~---~~G~~v~~~g~~~~y~------~~g~~ql~v~~i~~~g--~G~l~~~~e~lk~~L 127 (529)
+.|.|.+-...+....... --|.-|-+.|.++.+. -++..||.|+.++..+ .-+|..+.+-.++++
T Consensus 121 G~~s~i~vk~~~~~~~s~gl~~~s~n~G~~Vei~G~is~~~~~~~~~~r~~rqL~ve~i~vl~~~~~~l~~Ev~~W~~~l 200 (220)
T 3kf8_A 121 GIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRM 200 (220)
T ss_dssp SSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99468999957510256664445467684599998861044202213246537999999994367844779999999999
Q ss_pred H
Q ss_conf 5
Q gi|254780791|r 128 L 128 (529)
Q Consensus 128 ~ 128 (529)
+
T Consensus 201 ~ 201 (220)
T 3kf8_A 201 E 201 (220)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 233
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=52.29 E-value=9.4 Score=16.01 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=47.4
Q ss_pred ECCCHHHHHHHHHHHHH----CCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 47842589999998630----597-5899972100111103679999999974100357677758999516888444220
Q gi|254780791|r 152 TSPTGAVIRDILQRISC----RFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 152 ts~~~a~~~D~~~~~~~----r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
|++.-++.+|+...+.+ .+| .+|.+|.+.+-|-.-+.+ +.|++|...+.-+..+.+.
T Consensus 21 ~~ee~~~~~~~~~~~~~~~~~~~~~a~v~~FGS~~~Gl~~~~S------------------DiDl~l~~~~~~~~~~~~~ 82 (384)
T 3hj4_A 21 PPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHS------------------DADISLTYRNFSPWLQGME 82 (384)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTC------------------CEEEEEECTTCCGGGTTCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC------------------CEEEEEECCCCCCHHHHHH
T ss_conf 9799999999999999999954999899998971047999598------------------8279994488876466778
Q ss_pred CCHHHHHHHH-----------------HHCCCEEEEEECCCC
Q ss_conf 0769999999-----------------748904885205777
Q gi|254780791|r 227 FNDEMIVRAI-----------------ANSSIPIISAIGHET 251 (529)
Q Consensus 227 FN~e~laraI-----------------~~~~iPVisgIGHE~ 251 (529)
.-.+.....+ ...++|||.-+.-++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ArVPiik~~~~~~ 124 (384)
T 3hj4_A 83 RVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTDGVT 124 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCC
T ss_conf 899999999999987622366025643220136699885588
No 234
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=52.22 E-value=8 Score=16.64 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=48.3
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 77758999516888444220076999999974890488520577752589886412377721456763323467776699
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLI 286 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~ 286 (529)
..+|+|+|. .+..|...++.-..+.||||.=+---.|.+++||+ +|..++-...+.
T Consensus 150 ~~PdliiV~---------dp~~d~~AI~EA~kl~IPvIgivDTn~dp~~Vdyp---------------IP~NDdS~kSI~ 205 (253)
T 3bch_A 150 REPRLLVVT---------DPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA---------------IPCNNKGAHSVG 205 (253)
T ss_dssp CSCSEEEES---------CTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE---------------EESCCSSHHHHH
T ss_pred CCCCEEEEE---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE---------------EECCCCHHHHHH
T ss_conf 578635886---------23774377677876499779872489995447657---------------757884488999
Q ss_pred HHHHHHHHHH
Q ss_conf 9998887789
Q gi|254780791|r 287 NLEARLNNII 296 (529)
Q Consensus 287 ~l~~RL~~a~ 296 (529)
-...-|.+++
T Consensus 206 Li~~lLa~ai 215 (253)
T 3bch_A 206 LMWWMLAREV 215 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 235
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=52.12 E-value=9.4 Score=15.99 Aligned_cols=79 Identities=10% Similarity=0.207 Sum_probs=43.7
Q ss_pred CCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC-CHHHHHHCCHHHHHHHHHH----CCCE
Q ss_conf 597-589997210011110367999999997410035767775899951688-8444220076999999974----8904
Q gi|254780791|r 169 RFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG-SIEDLWHFNDEMIVRAIAN----SSIP 242 (529)
Q Consensus 169 r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG-S~eDL~~FN~e~laraI~~----~~iP 242 (529)
||+ |+|+-..+.| .+++++++...- ++|+|.|.===+ +...+. +=..++..+-+ .++|
T Consensus 154 ~~~~feVi~LG~~v----p~ee~v~~a~e~----------~aD~VgvS~llt~~~~h~~--~~~~li~~l~e~gl~~~v~ 217 (262)
T 1xrs_B 154 RYEMIDAYNLGSQV----ANEDFIKKAVEL----------EADVLLVSQTVTQKNVHIQ--NMTHLIELLEAEGLRDRFV 217 (262)
T ss_dssp GCTTEEEEECCSSB----CHHHHHHHHHHT----------TCSEEEEECCCCTTSHHHH--HHHHHHHHHHHTTCGGGSE
T ss_pred CCCCEEEEECCCCC----CHHHHHHHHHHC----------CCCEEEEEEECCCCHHHHH--HHHHHHHHHHHCCCCCCCE
T ss_conf 26844999688899----999999999864----------9999999752155233789--9999999999669988958
Q ss_pred EEEEECCCCCCHHHHHH-HCCCC
Q ss_conf 88520577752589886-41237
Q gi|254780791|r 243 IISAIGHETDWTLADYA-ADLRA 264 (529)
Q Consensus 243 VisgIGHE~D~Tl~D~V-AD~Ra 264 (529)
||.| |--.|.-+++.+ +|.=+
T Consensus 218 vivG-G~~~~~~~a~~lGaDavf 239 (262)
T 1xrs_B 218 LLCG-GPRINNEIAKELGYDAGF 239 (262)
T ss_dssp EEEE-CTTCCHHHHHTTTCSEEE
T ss_pred EEEE-CCCCCHHHHHHCCCCEEC
T ss_conf 9998-998999999977998876
No 236
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=52.07 E-value=9.4 Score=15.99 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=46.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
+||-|| .+......++..+=.+|++++.... -|+ +|++.+... ..||+|++ |++
T Consensus 6 ~rILiV--DD~~~~~~~l~~~L~~~g~~v~~a~---~g~-------eAl~~l~~~------~~~dlill--------D~~ 59 (140)
T 3h5i_A 6 KKILIV--EDSKFQAKTIANILNKYGYTVEIAL---TGE-------AAVEKVSGG------WYPDLILM--------DIE 59 (140)
T ss_dssp CEEEEE--CSCHHHHHHHHHHHHHTTCEEEEES---SHH-------HHHHHHHTT------CCCSEEEE--------ESS
T ss_pred CEEEEE--ECCHHHHHHHHHHHHHCCCEEEEEC---CHH-------HHHHHHHHC------CCCCEEEE--------ECC
T ss_conf 999999--5989999999999998799999989---899-------999999846------99989997--------266
Q ss_pred ---HCCHHHHHHHHHH-CCCEEEEEECCCC
Q ss_conf ---0076999999974-8904885205777
Q gi|254780791|r 226 ---HFNDEMIVRAIAN-SSIPIISAIGHET 251 (529)
Q Consensus 226 ---~FN~e~laraI~~-~~iPVisgIGHE~ 251 (529)
.+|-.++++.|-. +.+|||-=-||..
T Consensus 60 mp~g~dG~e~~~~ir~~~~~PvI~lT~~~~ 89 (140)
T 3h5i_A 60 LGEGMDGVQTALAIQQISELPVVFLTAHTE 89 (140)
T ss_dssp CSSSCCHHHHHHHHHHHCCCCEEEEESSSS
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 533578999999998569998999989999
No 237
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, structural genomics, MCSG, PSI-2; 1.60A {Methanothermobacterthermautotrophicus str}
Probab=51.69 E-value=9.5 Score=15.94 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
Q ss_conf 0079999999999765401226100163102652899984784--25899999986305975899972100111103679
Q gi|254780791|r 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPT--GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEI 190 (529)
Q Consensus 113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~--~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i 190 (529)
.||-.+..+.++.... -.++|.|.|.-. =.++.||++.+...- .+.+-+|+-+-.-.--+.|
T Consensus 19 ~GD~~EEve~Iq~~I~---------------~Ak~ivV~t~N~kK~~vi~~il~~~~~~~-~~~l~i~Tn~aDlTRmPAi 82 (156)
T 3brc_A 19 RGDRSEEVEAIRKYIR---------------SARRTVVPNWNAEKVDAINDVLRSFNLRE-AEHLQFNTNWADLTRMPAV 82 (156)
T ss_dssp CSCCHHHHHHHHHHHH---------------HCSCEEECCCCHHHHHHHHHHHHHTTCCC-CEECCSCCGGGGGSSSHHH
T ss_pred CCCHHHHHHHHHHHHH---------------CCCEEEEECCCCHHHHHHHHHHHHCCCCC-CEEEECCCCCHHCCCCCHH
T ss_conf 5655999999999985---------------26649985697067799999999816863-0046546760011137077
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 999999974100357677758999516
Q gi|254780791|r 191 ANAILQLNTLKEGRTCPRPDIIILARG 217 (529)
Q Consensus 191 ~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529)
.+||-..+.-+ -| +||+||
T Consensus 83 ~K~lmAvD~sd-------AD-lvIARG 101 (156)
T 3brc_A 83 TKALMALDISG-------AD-LVIARG 101 (156)
T ss_dssp HHHHHHHHHHC-------CS-EEEEEE
T ss_pred HHHHHEEECCC-------CC-EEEECC
T ss_conf 64441142368-------84-799605
No 238
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} PDB: 3dgf_C 3dge_C
Probab=51.33 E-value=9.7 Score=15.90 Aligned_cols=83 Identities=19% Similarity=0.285 Sum_probs=51.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
.+||-||- +...+.+++..+=..+++++.... +-.+|++.+... .||+||+ |+
T Consensus 2 ~~rILvVD--D~~~~~~~l~~~L~~~g~~v~~a~----------~g~eal~~~~~~-------~pdliil--------D~ 54 (122)
T 3gl9_A 2 SKKVLLVD--DSAVLRKIVSFNLKKEGYEVIEAE----------NGQIALEKLSEF-------TPDLIVL--------XI 54 (122)
T ss_dssp CCEEEEEC--SCHHHHHHHHHHHHHTTCEEEEES----------SHHHHHHHHTTB-------CCSEEEE--------CS
T ss_pred CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE--------CC
T ss_conf 98599996--999999999999998799999989----------999999999837-------9999985--------10
Q ss_pred H--HCCHHHHHHHHHHC----CCEEEEEECCCCCCH
Q ss_conf 2--00769999999748----904885205777525
Q gi|254780791|r 225 W--HFNDEMIVRAIANS----SIPIISAIGHETDWT 254 (529)
Q Consensus 225 ~--~FN~e~laraI~~~----~iPVisgIGHE~D~T 254 (529)
. ..|-.++++.|-+. .+|||-=-||..+.+
T Consensus 55 ~mP~~~G~el~~~ir~~~~~~~iPiI~lT~~~~~~~ 90 (122)
T 3gl9_A 55 MMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEED 90 (122)
T ss_dssp CCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHH
T ss_conf 289998899999998388789998999827999999
No 239
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=51.32 E-value=9.7 Score=15.90 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=51.8
Q ss_pred EEEEEECCCHHHHH-----HHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----EECC
Q ss_conf 89998478425899-----99998630597589997210011110367999999997410035767775899----9516
Q gi|254780791|r 147 IIAVITSPTGAVIR-----DILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII----LARG 217 (529)
Q Consensus 147 ~i~vits~~~a~~~-----D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii----i~RG 217 (529)
||+||.|.==.-+- ..+..+.+. .+.+.++ .|-| +-||--+++.+-.... ....+||.+| |+||
T Consensus 14 kI~IV~s~~n~~It~~l~~~a~~~L~~~-g~~~~~i--~VPG---a~EiP~~~~~~~~~~~-~~~~~~d~vIalG~VIkG 86 (157)
T 2i0f_A 14 HLLIVEARFYDDLADALLDGAKAALDEA-GATYDVV--TVPG---ALEIPATISFALDGAD-NGGTEYDGFVALGTVIRG 86 (157)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHT-TCEEEEE--EESS---GGGHHHHHHHHHHHHH-TTCCCCSEEEEEEEEECC
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHC-CCCEEEE--EECC---HHHHHHHHHHHHHHHH-CCCCCCCEEEEEEEEECC
T ss_conf 8999977488899999999999999986-9975899--9660---7665899999998744-036775789998878738
Q ss_pred CCCHHHHHHCCHHHHHHHH----HHCCCEEEEEE
Q ss_conf 8884442200769999999----74890488520
Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAI----ANSSIPIISAI 247 (529)
Q Consensus 218 GGS~eDL~~FN~e~laraI----~~~~iPVisgI 247 (529)
+=.--|+.| ..+++.| .+..+||+.||
T Consensus 87 eT~H~e~I~---~~v~~gl~~lsl~~~~PI~~GI 117 (157)
T 2i0f_A 87 ETYHFDIVS---NESCRALTDLSVEESIAIGNGI 117 (157)
T ss_dssp SSSTTHHHH---HHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHH---HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 883589999---9999999999721699779997
No 240
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=51.27 E-value=9.7 Score=15.89 Aligned_cols=42 Identities=29% Similarity=0.619 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCC-E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 89999998630597-5-899972100111103679999999974100357677758999516
Q gi|254780791|r 158 VIRDILQRISCRFP-L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529)
Q Consensus 158 ~~~D~~~~~~~r~p-~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529)
.+.+++..+...+| + .+++|.+..-|+..+.| ++|++|+..+
T Consensus 18 ~~~e~i~~l~~~~~~i~~v~LFGS~ArG~~~~~S------------------DIDl~Vi~~~ 61 (111)
T 2rff_A 18 LAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTS------------------DIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTC------------------CEEEEEEESS
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC------------------CEEEEEEECC
T ss_conf 9999999999866995699998976679989999------------------9799999679
No 241
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=51.05 E-value=9.7 Score=15.86 Aligned_cols=55 Identities=11% Similarity=0.200 Sum_probs=41.0
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-EEEEEECCCCEEEEEEEE---EEECCC
Q ss_conf 7999874894799999735210586681459889999-996675288437999997---101680
Q gi|254780791|r 53 AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVI-GKITTFPGSSKYQIIIES---LIPSGS 113 (529)
Q Consensus 53 ~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~-g~~~~y~~~g~~ql~v~~---i~~~g~ 113 (529)
+.+.+-|+.+.|+.++|...+.. ++.|+-|.+. ++++.| +|.++|.+.. |++.+.
T Consensus 64 ~~~~v~DeTG~i~~tlW~~~~~~----~~~Gdvv~i~n~~v~~~--~g~~~L~~g~~g~I~~~~e 122 (145)
T 1wjj_A 64 VECLIGDETGCILFTARNDQVDL----MKPGATVILRNSRIDMF--KGTMRLGVDKWGRIEATGA 122 (145)
T ss_dssp EEEEEECSSCEEEEEECTTHHHH----TCTTCEEEEEEEEEEEE--TTEEEEEECTTCCBCCCSC
T ss_pred EEEEEECCCCEEEEEEEECCCCC----CCCCCEEEEEEEEEEEE--CCEEEEEECCCEEEEECCC
T ss_conf 99999758877999996122012----57899999964899977--8979999799888999888
No 242
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP, protein structure initiative; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=50.95 E-value=9.8 Score=15.85 Aligned_cols=69 Identities=14% Similarity=0.275 Sum_probs=37.0
Q ss_pred HHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHH-HHHCCHHHHHHH
Q ss_conf 99999986305-97589997210011110367999999997410035767775899951-6888444-220076999999
Q gi|254780791|r 159 IRDILQRISCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIED-LWHFNDEMIVRA 235 (529)
Q Consensus 159 ~~D~~~~~~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eD-L~~FN~e~lara 235 (529)
+..+...+... .++++ ..+.|. ....|++..+.. .+|+||+++ |=|.+.. |..=+.+.|+
T Consensus 89 l~~~~~~~~~~~v~~~~----~~~~G~-~~~~I~~~a~~~----------~~dlIVmG~~g~~~~~~~~lGSvs~~v~-- 151 (175)
T 2gm3_A 89 LEFFVNKCHEIGVGCEA----WIKTGD-PKDVICQEVKRV----------RPDFLVVGSRGLGRFQKVFVGTVSAFCV-- 151 (175)
T ss_dssp HHHHHHHHHHHTCEEEE----EEEESC-HHHHHHHHHHHH----------CCSEEEEEECCCC--------CHHHHHH--
T ss_pred HHHHHHHHHHCCCCEEE----EEEECC-HHHHHHHHHHHC----------CCCEEEECCCCCCCCCCCCCCCHHHHHH--
T ss_conf 99999999974982688----985346-427789999972----------8988996289998666662287999998--
Q ss_pred HHHCCCEEEE
Q ss_conf 9748904885
Q gi|254780791|r 236 IANSSIPIIS 245 (529)
Q Consensus 236 I~~~~iPVis 245 (529)
-.++.||+.
T Consensus 152 -~~a~cPVlv 160 (175)
T 2gm3_A 152 -KHAECPVMT 160 (175)
T ss_dssp -HHCSSCEEE
T ss_pred -HCCCCCEEE
T ss_conf -177988899
No 243
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, IAP-binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=50.87 E-value=9.8 Score=15.84 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=30.8
Q ss_pred HHCCHHH--HHCCCEEEEECCCCCEECCHHHC----CCCCEEEEEEE-CEE
Q ss_conf 7169677--73146199984898895777892----99986999991-109
Q gi|254780791|r 450 QSFAYKN--TLKRGYTSIQDTNNNFITQKRNL----ATKTRILINFF-DGQ 493 (529)
Q Consensus 450 ~slsP~~--~L~RGYaiv~~~~GkiI~s~~~l----~~gd~i~i~l~-DG~ 493 (529)
..-||-. =|+.|--|+. -||+.|++..++ +.|+.+++... +|+
T Consensus 264 ~~~spA~~AGL~~GDiI~~-inG~~I~~~~~l~~~~~~g~~v~l~V~R~g~ 313 (325)
T 1lcy_A 264 ILGSPAHRAGLRPGDVILA-IGEQMVQNAEDVYEAVRTQSQLAVQIRRGRE 313 (325)
T ss_dssp CTTSHHHHHTCCTTCEEEE-ETTEECCSHHHHHHHHTTCSSEEEEEEETTE
T ss_pred CCCCHHHHCCCCCCCEEEE-ECCEECCCHHHHHHHHCCCCEEEEEEEECCE
T ss_conf 7999689869998999999-8999938999999975589879999999999
No 244
>2ql3_A Probable transcriptional regulator, LYSR family protein; APC7314, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Rhodococcus SP}
Probab=50.50 E-value=9.9 Score=15.80 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=40.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 28999847842589999998630597-589997210011110367999999997410035767775899951
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
-+||+.++.....+-+++..++++|| +++.+... ...++..++.. ..+|+.|...
T Consensus 7 lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~i~~~------~~~~l~~~l~~----------g~~Dl~i~~~ 62 (209)
T 2ql3_A 7 IAVGCYPALGPTILPSMLYAFTAEYPRASVEFRED------TQNRLRTQLEG----------GELDVAIVYD 62 (209)
T ss_dssp EEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEEC------CHHHHHHHHHT----------TSCSEEEEES
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CHHHHHHHHHC----------CCCEEEEEEC
T ss_conf 99996889999999999999999887938999989------82899987607----------9835885304
No 245
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus}
Probab=50.06 E-value=10 Score=15.74 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q ss_conf 5899999986305975899
Q gi|254780791|r 157 AVIRDILQRISCRFPLRVI 175 (529)
Q Consensus 157 a~~~D~~~~~~~r~p~~~~ 175 (529)
.++-+.+++.+..||..+.
T Consensus 685 ~gvle~iri~r~Gyp~r~~ 703 (1080)
T 2dfs_A 685 CGVLETIRISAAGFPSRWT 703 (1080)
T ss_dssp TTHHHHHHHHTTSCCEEEE
T ss_pred CCCHHHHHHHHCCCCCCCC
T ss_conf 5879999999738985265
No 246
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A
Probab=48.82 E-value=10 Score=15.60 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCCCEEEEECCCCCHHH----HHHCCHHHHHHHHHHCCCEEE-EEECCC
Q ss_conf 77758999516888444----220076999999974890488-520577
Q gi|254780791|r 207 PRPDIIILARGGGSIED----LWHFNDEMIVRAIANSSIPII-SAIGHE 250 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eD----L~~FN~e~laraI~~~~iPVi-sgIGHE 250 (529)
..+|.||| =|.||..+ |...+-.+..+..++..+||+ .-.||.
T Consensus 41 ~~~D~iIl-PG~G~~~~~~~~l~~~~l~~~I~~~~~~~~PiLGIClG~Q 88 (201)
T 1gpw_B 41 DLYDLLFI-PGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQ 88 (201)
T ss_dssp SCCSEEEE-CCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHH
T ss_pred CCCCEEEE-CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 02897999-8987589999996565878899999976998899986177
No 247
>2bon_A Lipid kinase; DAG kinase, ATP-binding, transferase; 1.9A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=47.80 E-value=11 Score=15.48 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=8.9
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 100111103679999999
Q gi|254780791|r 179 VKVQGDECPKEIANAILQ 196 (529)
Q Consensus 179 ~~vQG~~a~~~i~~ai~~ 196 (529)
+.+=|++...+++++|..
T Consensus 87 V~~GGDGTv~evv~gL~~ 104 (332)
T 2bon_A 87 IAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp EEEESHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHH
T ss_conf 999883699999999986
No 248
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=47.23 E-value=5.9 Score=17.79 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=13.3
Q ss_pred CCCEEEEEEECCCCEEEE
Q ss_conf 886279998748947999
Q gi|254780791|r 49 SSGHAYFSLKDNHSRIDA 66 (529)
Q Consensus 49 ~sGH~Yf~lkd~~a~i~~ 66 (529)
+.|+|||.||+.+.++=+
T Consensus 31 ~~G~~rfrLka~NGqvIa 48 (83)
T 2k7i_A 31 KAGEYRFRFKASNGETMF 48 (83)
T ss_dssp TTSCEEEEECCTTSCCCE
T ss_pred CCCCEEEEEEECCCCEEE
T ss_conf 899899999969999999
No 249
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), homoserine O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=47.15 E-value=11 Score=15.40 Aligned_cols=89 Identities=19% Similarity=0.183 Sum_probs=56.8
Q ss_pred HHHHHHHHCCCCCCCCCC--CCCCCEEEEEEC-CC-HHHHHHHHHHHHHCCC-EEEE-EEECCCCCCCHHHHHHHHHHHH
Q ss_conf 997654012261001631--026528999847-84-2589999998630597-5899-9721001111036799999999
Q gi|254780791|r 124 KKKLLEEGLFSDQHKNPI--PFIPKIIAVITS-PT-GAVIRDILQRISCRFP-LRVI-IFPVKVQGDECPKEIANAILQL 197 (529)
Q Consensus 124 k~~L~~eGlfd~~~k~~l--P~~p~~i~vits-~~-~a~~~D~~~~~~~r~p-~~~~-~~p~~vQG~~a~~~i~~ai~~~ 197 (529)
++.|++||.|--+..+.. --=|.+|||+-= |+ -+.=..|++.+...-. +++. +++...+..+.+.+.+.. +
T Consensus 24 ~~~l~~e~i~~~~~~~a~~qdirpl~I~ilNlMP~k~~TE~qf~rll~~~~lqv~~~~~~~~~h~~~~~~~~~l~~---~ 100 (312)
T 2h2w_A 24 VKVLAKEGIFVMTEKRAIHQDIRPLEILILNLMPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILK---F 100 (312)
T ss_dssp HHHHHTTTCCCBCCC------CCCEEEEEECCCSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHH---H
T ss_pred HHHHHHCCCEEECHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHH---H
T ss_conf 7899878977827656233565112046560789717899999998578875069999883454679988799998---6
Q ss_pred HHHCCCCCCCCCCEEEEE
Q ss_conf 741003576777589995
Q gi|254780791|r 198 NTLKEGRTCPRPDIIILA 215 (529)
Q Consensus 198 ~~~~~~~~~~~~D~iii~ 215 (529)
-..-+.-...+||.+||.
T Consensus 101 Y~~~ddi~~~~yDGlIIT 118 (312)
T 2h2w_A 101 YTTFSAVKDRKFDGFIIT 118 (312)
T ss_dssp CBCGGGTTTCCEEEEEEC
T ss_pred CCCHHHHHHCCCCEEEEE
T ss_conf 147877612567679982
No 250
>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4}
Probab=47.04 E-value=11 Score=15.38 Aligned_cols=127 Identities=19% Similarity=0.164 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCC-CHHHHHHHHHH
Q ss_conf 9999999976540122610016310265289998478425899999986305975-899972100111-10367999999
Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGD-ECPKEIANAIL 195 (529)
Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~-~a~~~i~~ai~ 195 (529)
...+++.+.|.-.| +=.|.-.-|-++.+.|....-..+.. .+-..+.|. ++.+++..-... .+.++.++||+
T Consensus 110 ~ai~~~~~~l~i~~-----~VlP~T~~~v~l~a~~~dG~~~~gE~-~i~~~~~~i~~v~~~~~~~~~~p~~~~~~~~aI~ 183 (326)
T 2q7x_A 110 NAMQLLSXFFHTTG-----XIYPSSDHPLTLHAVFQDGTEVAGES-HIVDHRGIIDNVYVTNALNDDTPLASRRVVQTIL 183 (326)
T ss_dssp HHHHHHHHHHTCCS-----EEEESBSSCEEEEEEETTSCEEESHH-HHHHSCSCEEEEEEEESSCSSCCCBCSHHHHHHH
T ss_pred HHHHHHHHHHCCCE-----EEECCCCCCEEEEEEECCCCEEECEE-HHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99999999868984-----79867489558999987998992336-2321367786699961578778878989999885
Q ss_pred HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE--EC--C-CCC-CHHHHHHHCC
Q ss_conf 997410035767775899951688844422007699999997489048852--05--7-775-2589886412
Q gi|254780791|r 196 QLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA--IG--H-ETD-WTLADYAADL 262 (529)
Q Consensus 196 ~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg--IG--H-E~D-~Tl~D~VAD~ 262 (529)
. -|+|||+=|-==..=+-.+--..+..||.+++-|+|-- ++ + ||| +|+.|+|+-+
T Consensus 184 ~------------AD~IiigPgs~~tSI~P~L~v~gi~~ai~~s~a~kV~v~Nl~t~~gET~g~~~~d~v~~i 244 (326)
T 2q7x_A 184 E------------SDMIVLGPGSLFTSILPNIVIXEIGRALLETXAEIAYVCNIMTQRGETEHFTDSDHVEVL 244 (326)
T ss_dssp H------------CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCSSEEEEECCSBCCTTSCTTCCHHHHHHHH
T ss_pred C------------CCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 5------------998999899706655358299999999985799889998079986344799999999999
No 251
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=46.98 E-value=11 Score=15.46 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=45.3
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 77758999516888444220076999999974890488520577752589886412377721456763323467776699
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLI 286 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~ 286 (529)
..||+|||. .+-.|..+++.-..+.||||+=+---.|.+.+||. +|..++-...+.
T Consensus 156 ~~Pd~viv~---------d~~~~~~ai~Ea~~l~IPvI~ivDtn~~p~~idyp---------------IP~Ndds~~si~ 211 (231)
T 3bbn_B 156 GLPDIVIIV---------DQQEEYTALRECITLGIPTICLIDTNCNPDLADIS---------------IPANDDAIASIR 211 (231)
T ss_dssp SCCSEEEES---------CTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEE---------------CCCCSSSHHHHH
T ss_pred CCCCEEEEC---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE---------------EECCCCHHHHHH
T ss_conf 299779852---------86322799999997399878874389897755368---------------737887699999
Q ss_pred HHHHHHHHH
Q ss_conf 999888778
Q gi|254780791|r 287 NLEARLNNI 295 (529)
Q Consensus 287 ~l~~RL~~a 295 (529)
-+..-|..+
T Consensus 212 li~~~l~~a 220 (231)
T 3bbn_B 212 LILTKLVFA 220 (231)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999999
No 252
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=46.93 E-value=7.7 Score=16.75 Aligned_cols=81 Identities=11% Similarity=0.136 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCC--E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHH
Q ss_conf 89999998630597--5-89997210011110367999999997410035767775899951688844422007699999
Q gi|254780791|r 158 VIRDILQRISCRFP--L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVR 234 (529)
Q Consensus 158 ~~~D~~~~~~~r~p--~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lar 234 (529)
.+++|...+.++|| + .|.||.+...|+..+.| ++|+.|+.+++-+....-.||
T Consensus 15 ~~~~~~~~l~~~~~~~v~~i~l~GS~a~g~~~~~S------------------DiDl~v~~~~~~~~~~~~~~~------ 70 (253)
T 1kny_A 15 IVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYS------------------DIEMMCVMSTEEAEFSHEWTT------ 70 (253)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTC------------------CEEEEEEESSTTCEEEEEEEC------
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC------------------CEEEEEEECCCCCCCCHHHHH------
T ss_conf 99999999999827235799998476368999998------------------745999975887642113540------
Q ss_pred HHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCH
Q ss_conf 9974890488520577752589886412377721
Q gi|254780791|r 235 AIANSSIPIISAIGHETDWTLADYAADLRAPTPT 268 (529)
Q Consensus 235 aI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPT 268 (529)
..+|+-. .+|..| .+.+..+...-..|-
T Consensus 71 ----~~~~~~i-~~~~~~-~~~~~~~~v~~~~~~ 98 (253)
T 1kny_A 71 ----GEWKVEV-NFYSEE-ILLDYASQVESDWPL 98 (253)
T ss_dssp ----SSCEEEE-EEEEHH-HHHHHHTCCCTTHHH
T ss_pred ----CCCCEEE-EEEEHH-HHHHHHHHHHHCCHH
T ss_conf ----6864078-987658-999889986440613
No 253
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=46.66 E-value=11 Score=15.34 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf 99999997410035767775899951688844422007699999997489048852057775258
Q gi|254780791|r 191 ANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL 255 (529)
Q Consensus 191 ~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl 255 (529)
-++++.+.+.+ +|.+|++=|.||...-..+.++.-- ..+.|||| ||=.-+|-=|
T Consensus 179 ~~i~~~L~~~~-------Id~LivIGGdgS~~~A~~Lae~~~~---~~~~i~VI-GIPKTIDNDl 232 (487)
T 2hig_A 179 KEMVDTLERLG-------VNILFTVGGDGTQRGALVISQEAKR---RGVDISVF-GVPKTIDNDL 232 (487)
T ss_dssp HHHHHHHHHHT-------CSEEEEEECHHHHHHHHHHHHHHHH---HTCCCEEE-EEECCTTSSC
T ss_pred HHHHHHHHHHC-------CCEEEEECCHHHHHHHHHHHHHHHH---CCCCCEEE-EEECCCCCCC
T ss_conf 99999999849-------9879995674789999999999886---28983299-8402556887
No 254
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A
Probab=46.65 E-value=11 Score=15.34 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=51.5
Q ss_pred HHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHH
Q ss_conf 89999998630---597589997210011110367999999997410035767775899951688844422007699999
Q gi|254780791|r 158 VIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVR 234 (529)
Q Consensus 158 ~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lar 234 (529)
-+.|+.+.++. ...+++..|-+=..| +|++.|..... .+|.|||-=|| |..-+..+..
T Consensus 28 tl~~i~~~~~~~a~~~g~~l~~~QSN~Eg-----eli~~Iq~~~~--------~~~giIiNpga------~Th~S~al~D 88 (146)
T 1h05_A 28 THDELVALIEREAAELGLKAVVRQSDSEA-----QLLDWIHQAAD--------AAEPVILNAGG------LTHTSVALRD 88 (146)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEECSCHH-----HHHHHHHHHHH--------HTCCEEEECGG------GGGTCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCHH-----HHHHHHHHHCC--------CCCEEEECCCH------HEEEHHHHHH
T ss_conf 89999999999999839717897335389-----99999998434--------68617963511------2120251899
Q ss_pred HHHHCCCEEEE
Q ss_conf 99748904885
Q gi|254780791|r 235 AIANSSIPIIS 245 (529)
Q Consensus 235 aI~~~~iPVis 245 (529)
|+..+++|+|-
T Consensus 89 al~~~~~P~iE 99 (146)
T 1h05_A 89 ACAELSAPLIE 99 (146)
T ss_dssp HHHTCCSCEEE
T ss_pred HHHHCCCCEEE
T ss_conf 99864998899
No 255
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=45.88 E-value=11 Score=15.36 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=25.8
Q ss_pred CEEEEEECCCCCCHHH-HHHHC-----CCCCCCHHHHHHHC
Q ss_conf 0488520577752589-88641-----23777214567633
Q gi|254780791|r 241 IPIISAIGHETDWTLA-DYAAD-----LRAPTPTGAAEMAV 275 (529)
Q Consensus 241 iPVisgIGHE~D~Tl~-D~VAD-----~Ra~TPTaAAElav 275 (529)
-||+..+||-+|..-+ ++|.. .|-|+||-.|-..+
T Consensus 177 ~PiyVS~Gh~i~le~A~~iv~~~~~~~yRlPePlR~Ad~~s 217 (225)
T 2w36_A 177 APIFVSPGHLMDVESSKRLIKAFTLPGRRIPEPTRLAHIYT 217 (225)
T ss_dssp CCEEEEECSSCCHHHHHHHHHHHCCTTCSSCHHHHHHHHHH
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 89898389787999999999997258996884789999999
No 256
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Probab=45.66 E-value=9.1 Score=16.11 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 00799999999997654
Q gi|254780791|r 113 SGTLLTALEKRKKKLLE 129 (529)
Q Consensus 113 ~G~l~~~~e~lk~~L~~ 129 (529)
.-++...+..+.+.|..
T Consensus 90 ~~~~~~dl~~~l~~l~~ 106 (316)
T 3c5v_A 90 AETMAKDVGNVVEAMYG 106 (316)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999986511100
No 257
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=45.43 E-value=6.2 Score=17.61 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=32.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 8999847842589999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
-+||||.|+-.+-.+-+...+....+.++-+...--......++++.|+.+ ++|++|++--|-
T Consensus 48 i~~V~T~pdk~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~e~~~~l~~~----------~~Dl~v~~~~~~ 110 (329)
T 2bw0_A 48 VVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQAL----------GAELNVLPFCSQ 110 (329)
T ss_dssp EEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTT----------CCSEEEESSCSS
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHH----------CCCEEEEECCHH
T ss_conf 899990899888989699999981998864433676120489999999962----------969999906124
No 258
>1gqo_A Dehydroquinase, dhqase; dehydratase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=45.20 E-value=12 Score=15.17 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=50.3
Q ss_pred HHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHH
Q ss_conf 9999998630---5975899972100111103679999999974100357677758999516888444220076999999
Q gi|254780791|r 159 IRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRA 235 (529)
Q Consensus 159 ~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lara 235 (529)
+.|+...++. ...+++..|-+-..| +|++.|..... .+|-|||-=|| |..-+..+-.|
T Consensus 27 L~~i~~~~~~~a~~~~~~~~~~QSN~Eg-----elId~Iq~~~~--------~~dgiIiNpga------~thtS~al~Da 87 (143)
T 1gqo_A 27 LTDIETDLFQFAEALHIQLTFFQSNHEG-----DLIDAIHEAEE--------QYSGIVLNPGA------LSHYSYAIRDA 87 (143)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECSCHH-----HHHHHHHHHTT--------TCSEEEEECGG------GGGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHH-----HHHHHHHHHCC--------CCEEEEECCCH------HHEEEEEHHHH
T ss_conf 9999999999999869954375144189-----99999998355--------76058856601------50100119999
Q ss_pred HHHCCCEEEE
Q ss_conf 9748904885
Q gi|254780791|r 236 IANSSIPIIS 245 (529)
Q Consensus 236 I~~~~iPVis 245 (529)
+..+.+|+|-
T Consensus 88 l~~~~~p~iE 97 (143)
T 1gqo_A 88 VSSISLPVVE 97 (143)
T ss_dssp HHTSCSCEEE
T ss_pred HHHCCCCEEE
T ss_conf 9845999899
No 259
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=44.91 E-value=12 Score=15.13 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=47.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH-
Q ss_conf 8999847842589999998630597589997210011110367999999997410035767775899951688844422-
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW- 225 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~- 225 (529)
+|-||- +....+++++.+-+ +.+++.... +-.+|++.+... .||+||+ |++
T Consensus 6 rILiVD--D~~~~r~~l~~~L~-~~~~v~~a~----------~g~eal~~l~~~-------~pdliil--------D~~m 57 (133)
T 3nhm_A 6 KVLIVE--NSWTMRETLRLLLS-GEFDCTTAA----------DGASGLQQALAH-------PPDVLIS--------DVNM 57 (133)
T ss_dssp EEEEEC--SCHHHHHHHHHHHT-TTSEEEEES----------SHHHHHHHHHHS-------CCSEEEE--------CSSC
T ss_pred EEEEEE--CCHHHHHHHHHHHH-CCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE--------CCCC
T ss_conf 799994--98999999999997-899899989----------999999999847-------9999997--------5999
Q ss_pred -HCCHHHHHHHHHHC----CCEEEEEECCC
Q ss_conf -00769999999748----90488520577
Q gi|254780791|r 226 -HFNDEMIVRAIANS----SIPIISAIGHE 250 (529)
Q Consensus 226 -~FN~e~laraI~~~----~iPVisgIGHE 250 (529)
..|-.++++.|-+. .+|||-=-|+.
T Consensus 58 P~~dG~el~~~ir~~~~~~~iPiI~lT~~~ 87 (133)
T 3nhm_A 58 DGMDGYALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp SSSCHHHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 999999999999828888998789970788
No 260
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=44.70 E-value=12 Score=15.11 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=48.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHC---------CCEEEEEEECCC------CCCCHHHHHHH----HHHHHHHHCCCCC
Q ss_conf 5289998478425899999986305---------975899972100------11110367999----9999974100357
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCR---------FPLRVIIFPVKV------QGDECPKEIAN----AILQLNTLKEGRT 205 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r---------~p~~~~~~p~~v------QG~~a~~~i~~----ai~~~~~~~~~~~ 205 (529)
-|.||||..-+-+|=-||.+.+.+. +| .+++|...+ .|+.....+.. +++.+...
T Consensus 2 Mk~IGIiGGmgp~at~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~----- 75 (231)
T 3ojc_A 2 MKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSA-KIILYSVDFHEIEQLQAKGDWQTAAQLLSNAAISLKHA----- 75 (231)
T ss_dssp CCCEEEEECTTHHHHHHHHHHHHHHHHHHHCTTCCC-CEEEEECCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----
T ss_conf 976999706388999999999999988754776786-68995388532100234688106999999999999976-----
Q ss_pred CCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 6777589995168884442200769999999748904885
Q gi|254780791|r 206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 206 ~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.+|+|+++==--|. | +++ + + ..+++|+|.
T Consensus 76 --g~~~iviaCNTah~---~-~~~--l-~--~~~~ipii~ 104 (231)
T 3ojc_A 76 --GAEVIVVCTNTMHK---V-ADD--I-E--AACGLPLLH 104 (231)
T ss_dssp --TCCEEEECSSGGGG---G-HHH--H-H--HHHCSCBCC
T ss_pred --CCCEEEECCHHHHH---H-HHH--H-H--HHCCCCCEE
T ss_conf --99999976368899---9-999--9-9--863999545
No 261
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=44.66 E-value=12 Score=15.10 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH
Q ss_conf 8425899999986305975899972100-111103679999999974100357677758999516888444220076999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI 232 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l 232 (529)
++-..+-++.+.+.+..++.+++|..+. -|..-..+.+.-+ .. .+-++-+==..|.... +.+ +
T Consensus 121 ~~~~~i~~~~~~i~~~~~~pi~lYn~P~~~g~~~~~~~~~~l---~~--------~pnvvgiK~~~~~~~~---~~~--~ 184 (301)
T 1xky_A 121 PSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRL---SE--------IENIVAIKDAGGDVLT---MTE--I 184 (301)
T ss_dssp CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHH---HT--------STTEEEEEECSSCHHH---HHH--H
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHH---CC--------CCCEEEEECCCCCHHH---HHH--H
T ss_conf 899999999999985189978999687633558799999985---33--------8998998658897789---999--9
Q ss_pred HHHHHHCCCEEEEEEC
Q ss_conf 9999748904885205
Q gi|254780791|r 233 VRAIANSSIPIISAIG 248 (529)
Q Consensus 233 araI~~~~iPVisgIG 248 (529)
..-....+.|++|-+
T Consensus 185 -~~~~~~~~~v~~G~~ 199 (301)
T 1xky_A 185 -IEKTADDFAVYSGDD 199 (301)
T ss_dssp -HHHSCTTCEEEESSG
T ss_pred -HHHCCCCEEEEECCC
T ss_conf -863489869996872
No 262
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.53 E-value=12 Score=15.09 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=23.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 289998478425899999986305975899972100111103679999999974100357677758999516888
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
.+|+.|++-.+ +.+....+.....+.+. |... ++.+|.+.+....+ .+| |||.|||-+
T Consensus 5 ~kI~~iap~e~--l~~l~~~~a~~~~~~~~-----~~~~----~l~~~~~iA~~l~~-----~~D-VIISRGgTa 62 (196)
T 2q5c_A 5 LKIALISQNEN--LLNLFPKLALEKNFIPI-----TKTA----SLTRASKIAFGLQD-----EVD-AIISRGATS 62 (196)
T ss_dssp CEEEEEESCHH--HHHHHHHHHHHHTCEEE-----EEEC----CHHHHHHHHHHHTT-----TCS-EEEEEHHHH
T ss_pred CEEEEECCCHH--HHHHHHHHHHHCCCEEE-----EEEE----EHHHHHHHHHHHHC-----CCC-EEEECCHHH
T ss_conf 15999879388--99999999975487567-----8866----69999999997543-----987-999896589
No 263
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT domain, amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=44.47 E-value=12 Score=15.08 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHCCHHHHHHHHHH------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 16888444220076999999974------890488520577752589886
Q gi|254780791|r 216 RGGGSIEDLWHFNDEMIVRAIAN------SSIPIISAIGHETDWTLADYA 259 (529)
Q Consensus 216 RGGGS~eDL~~FN~e~laraI~~------~~iPVisgIGHE~D~Tl~D~V 259 (529)
=||=|+.|--+|. .|++-|.. -.+=|+||.|.-||. |.+++
T Consensus 7 FGGtSv~~~~~i~--~v~~iI~~~~~~~~~~vvVvSA~~g~Td~-L~~~~ 53 (473)
T 3c1m_A 7 FGGTSVGSGERIR--HVAKIVTKRKKEDDDVVVVVSAMSEVTNA-LVEIS 53 (473)
T ss_dssp ECTTTTSSHHHHH--HHHHHHHHHHTTCSCEEEEECCSTTHHHH-HHHHH
T ss_pred ECCHHCCCHHHHH--HHHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHH
T ss_conf 4832026799999--99999855764678777657688785069-99999
No 264
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=44.39 E-value=12 Score=15.07 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCHHHHH----HCCHHHHHHHHHHCCCEEE-EEECCCC
Q ss_conf 7775899951688844422----0076999999974890488-5205777
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLW----HFNDEMIVRAIANSSIPII-SAIGHET 251 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~----~FN~e~laraI~~~~iPVi-sgIGHE~ 251 (529)
.++|.||| =||||..+.+ ..+-....+..+...+||+ .-.||..
T Consensus 39 ~~~D~iIl-PG~G~~~~~~~~l~~~~~~~~i~~~~~~~~PILGIClG~Ql 87 (200)
T 1ka9_H 39 EEADLLVL-PGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQV 87 (200)
T ss_dssp SSCSEEEE-CCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHT
T ss_pred HHCCEEEE-CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHHH
T ss_conf 53798999-59875899997665459299999998759938998299999
No 265
>2f48_A Diphosphate--fructose-6-phosphate 1- phosphotransferase; HET: FBP; 2.11A {Borrelia burgdorferi B31} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=43.76 E-value=12 Score=15.00 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=50.3
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHH----HHCCC-EEEEEE----------------EC-----CCCCC-----------
Q ss_conf 26528999847-8425899999986----30597-589997----------------21-----00111-----------
Q gi|254780791|r 143 FIPKIIAVITS-PTGAVIRDILQRI----SCRFP-LRVIIF----------------PV-----KVQGD----------- 184 (529)
Q Consensus 143 ~~p~~i~vits-~~~a~~~D~~~~~----~~r~p-~~~~~~----------------p~-----~vQG~----------- 184 (529)
.-|.||||||| -.++|++-+++-+ ....+ .+++-+ +. .-||-
T Consensus 70 ~~~~~IgIl~sGG~aPG~N~vI~gvv~~~~~~~~~~~v~G~~~G~~GL~~~~~i~Lt~~~v~~~~n~GG~~l~~s~r~~~ 149 (555)
T 2f48_A 70 SKALNIGIILSGGPAPGGHNVISGVFDAIKKFNPNSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKI 149 (555)
T ss_dssp CSCCEEEEEEBSSCCTTHHHHHHHHHHHHHHHCTTCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 88876999780787488999999999999985899899998254487578999999989984587179928417999997
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 1036799999999741003576777589995168884442200769999999748904885
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
..+...-++++.+...+ .|.+|++=|.||......+.++-. -..++||||.
T Consensus 150 ~~~e~~~~~~~~l~~~~-------Id~LviIGGddS~~~A~~Lae~~~---~~~~~i~VIg 200 (555)
T 2f48_A 150 ETEEHYNKALFVAKENN-------LNAIIIIGGDDSNTNAAILAEYFK---KNGENIQVIG 200 (555)
T ss_dssp CSHHHHHHHHHHHHHTT-------CSEEEEEESHHHHHHHHHHHHHHH---HTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHHCC-------CCEEEEECCHHHHHHHHHHHHHHH---HCCCCCEEEE
T ss_conf 77789999999998638-------988999787689999999999998---6167960898
No 266
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*
Probab=43.69 E-value=7.7 Score=16.80 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=19.6
Q ss_pred HHHHCCCEEEEEE-CCCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 9974890488520-577752-5898864123777214
Q gi|254780791|r 235 AIANSSIPIISAI-GHETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 235 aI~~~~iPVisgI-GHE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
.+..|+.|||++| ||=.-- .-.=+++|+|..++.+
T Consensus 279 ~~~~~~KPvIAaVnG~A~GGG~eLalacD~rIAae~A 315 (440)
T 2np9_A 279 HSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDA 315 (440)
T ss_dssp TCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTC
T ss_pred HHHHCCCCEEEEECCEEECCCCEEECCCCCCCCCCCC
T ss_conf 9984899889996684561765012375502003013
No 267
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=43.66 E-value=11 Score=15.51 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=29.1
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE
Q ss_conf 310265289998478425899999986305975
Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPL 172 (529)
Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~ 172 (529)
|++..|+.|-+||++.|+|--=+++.|.+++++
T Consensus 5 ~~~~~pk~II~ItG~~GSGKsTva~~L~e~~~~ 37 (202)
T 3ch4_B 5 PLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp TTBCCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999998389998897999999999999997299
No 268
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=43.58 E-value=12 Score=14.97 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCHHHH----------HHC------CHHHHHHHHHHCCCEEE
Q ss_conf 7589995168884442----------200------76999999974890488
Q gi|254780791|r 209 PDIIILARGGGSIEDL----------WHF------NDEMIVRAIANSSIPII 244 (529)
Q Consensus 209 ~D~iii~RGGGS~eDL----------~~F------N~e~laraI~~~~iPVi 244 (529)
+|-||+. |||.+..- ..+ -|..+.+...+..+||+
T Consensus 62 ~DGvll~-GG~dv~p~~yg~~~~~~~~~~~~~Rd~~e~~li~~a~~~~~Pil 112 (254)
T 3fij_A 62 VDGLLLT-GGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIF 112 (254)
T ss_dssp CSEEEEC-CCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 6949965-88778755468778754588765568999999999998599889
No 269
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=43.43 E-value=7.9 Score=16.70 Aligned_cols=44 Identities=9% Similarity=0.171 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 01111036799999999741003576777589995168884442200769999999748904885
Q gi|254780791|r 181 VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 181 vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
..|+ ....|++.. .. ..+|+||++.-|.|. |.|.+..|.+|++-
T Consensus 93 ~~G~-~~~~I~~~a---~e-------~~~DlIVmG~~~~~~----------l~r~l~gs~~~~li 136 (138)
T 1q77_A 93 RIGP-LSEEVKKFV---EG-------KGYELVVWACYPSAY----------LCKVIDGLNLASLI 136 (138)
T ss_dssp ECSC-HHHHHHHHH---TT-------SCCSEEEECSCCGGG----------THHHHHHSSSEEEE
T ss_pred CCCC-HHHHHHHHH---HH-------CCCCEEEECCCCCCH----------HHHHHCCCCCCEEE
T ss_conf 3699-899999999---97-------499999992899856----------89996589988788
No 270
>2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} SCOP: c.92.2.4
Probab=43.40 E-value=12 Score=14.95 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCEEEEEECCCH
Q ss_conf 001631026528999847842
Q gi|254780791|r 136 QHKNPIPFIPKIIAVITSPTG 156 (529)
Q Consensus 136 ~~k~~lP~~p~~i~vits~~~ 156 (529)
.|+..||.-|+||.++++...
T Consensus 17 Gr~Vtip~~p~RIv~l~~~~~ 37 (346)
T 2etv_A 17 GREVEIPSNVNRIVAVGPGAL 37 (346)
T ss_dssp SCEEEEESCCCCEEEESTTHH
T ss_pred CCEEECCCCCCEEEEECCHHH
T ss_conf 899983889888999692399
No 271
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=43.39 E-value=12 Score=14.95 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=39.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH-
Q ss_conf 6528999847842589999998630597589997210011110367999999997410035767775899951688844-
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE- 222 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e- 222 (529)
.+-|||||-=+ |. ++++++.|.+ ..+++.+... +.+ ...+|.||| =| |+..
T Consensus 22 ~~mkigvl~~~-Gn-~~s~~~AL~~-lG~~~~iv~~-------~~~----------------l~~~D~lIL-PG-G~~~~ 73 (219)
T 1q7r_A 22 SNMKIGVLGLQ-GA-VREHVRAIEA-CGAEAVIVKK-------SEQ----------------LEGLDGLVL-PG-GESTT 73 (219)
T ss_dssp CCCEEEEESCG-GG-CHHHHHHHHH-TTCEEEEECS-------GGG----------------GTTCSEEEE-CC-CCHHH
T ss_pred CCCEEEEEECC-CC-HHHHHHHHHH-CCCCEEEECC-------HHH----------------HHCCCEEEE-CC-CCHHH
T ss_conf 69779999658-83-9999999998-7996999899-------899----------------824999999-99-98799
Q ss_pred ---HHHHCCHHHHHHHHHHCCCEEE
Q ss_conf ---4220076999999974890488
Q gi|254780791|r 223 ---DLWHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 223 ---DL~~FN~e~laraI~~~~iPVi 244 (529)
.|+..+-.+..+..++...||+
T Consensus 74 ~~~~l~~~~l~~~I~~~~~~gkPiL 98 (219)
T 1q7r_A 74 MRRLIDRYGLMEPLKQFAAAGKPMF 98 (219)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCEE
T ss_conf 9998657873899999997799799
No 272
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=43.35 E-value=12 Score=14.95 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=15.8
Q ss_pred CEEEEEEECCCCCCCC---CCCCCCCEEEEEEE
Q ss_conf 4799999735210586---68145988999999
Q gi|254780791|r 62 SRIDAIIWKGTLNKIE---FLPEEGIEFLVIGK 91 (529)
Q Consensus 62 a~i~~~~~~~~~~~~~---~~~~~G~~v~~~g~ 91 (529)
..++++++-+...... ...+.|+-|++.++
T Consensus 70 ~~vdgiii~~~~~~~~~~~~~~~~~iPvV~~d~ 102 (303)
T 3kke_A 70 GRVDGVLLQRREDFDDDMLAAVLEGVPAVTINS 102 (303)
T ss_dssp CSSSEEEECCCTTCCHHHHHHHHTTSCEEEESC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 897889840346763999999975998899715
No 273
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=43.33 E-value=12 Score=14.95 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=14.9
Q ss_pred CCCEEEEEEECCCCEEEE
Q ss_conf 886279998748947999
Q gi|254780791|r 49 SSGHAYFSLKDNHSRIDA 66 (529)
Q Consensus 49 ~sGH~Yf~lkd~~a~i~~ 66 (529)
+.|.|||.||+.+.++=|
T Consensus 9 ~~g~~rfrLka~NGeiIa 26 (64)
T 3bid_A 9 AKGEYRWRLKAANHEIIA 26 (64)
T ss_dssp TTSCEEEEEECTTSCEEE
T ss_pred CCCCEEEEEEECCCCEEE
T ss_conf 899799999979999999
No 274
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=42.91 E-value=12 Score=14.90 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=83.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCEEEEE-EECCCCEEEEEEECCCCCC---CCCCCCC
Q ss_conf 888898622999999999997400-1718999997054356888627999-8748947999997352105---8668145
Q gi|254780791|r 8 NSLDHPEYSVSELSYHLKHIVESN-LSHVCVRGEISGYRGIHSSGHAYFS-LKDNHSRIDAIIWKGTLNK---IEFLPEE 82 (529)
Q Consensus 8 ~~~~~~~~svs~l~~~i~~~l~~~-~~~~~v~gEis~~~~~~~sGH~Yf~-lkd~~a~i~~~~~~~~~~~---~~~~~~~ 82 (529)
|+.+.|. .+++...|+..++.. |. + +. ..++.. +..---|++ +. ...++++++-..... +...-+.
T Consensus 11 p~~~~~~--~~~~~~gi~~~~~~~Gy~-~-~~-~~s~~~--~~~e~~~i~~l~--~~~vdgiIv~~~~~~~~~~~~l~~~ 81 (275)
T 3d8u_A 11 PSLFEKA--CAHFLPSFQQALNKAGYQ-L-LL-GYSDYS--IEQEEKLLSTFL--ESRPAGVVLFGSEHSQRTHQLLEAS 81 (275)
T ss_dssp SCSSCHH--HHHHHHHHHHHHHHTSCE-E-CC-EECTTC--HHHHHHHHHHHH--TSCCCCEEEESSCCCHHHHHHHHHH
T ss_pred CCCCCHH--HHHHHHHHHHHHHHCCCE-E-EE-EECCCC--HHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 9888769--999999999999985999-9-99-968999--899999999999--7399899957987998999999975
Q ss_pred CCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCH-HH---
Q ss_conf 98899999966752884379999971016800799999999997654012261001631026528999847842-58---
Q gi|254780791|r 83 GIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTG-AV--- 158 (529)
Q Consensus 83 G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~-a~--- 158 (529)
|..|++.|... .... +-.+ ..+. +.....+-+.|.+. -.++|+++.+... ..
T Consensus 82 ~~pvV~i~~~~-~~~~--~~~V--~~d~------~~~~~~~~~~l~~~-------------G~~~i~~i~~~~~~~~~~~ 137 (275)
T 3d8u_A 82 NTPVLEIAELS-SKAS--YLNI--GVDH------FEVGKACTRHLIEQ-------------GFKNVGFIGARGNHSTLQR 137 (275)
T ss_dssp TCCEEEESSSC-SSSS--SEEE--CBCH------HHHHHHHHHHHHTT-------------TCCCEEEEECSCSSHHHHH
T ss_pred CCCEEEEECCC-CCCC--CCEE--EECH------HHHHHHHHHHHHHC-------------CCCEEECCCCCCCCHHHHH
T ss_conf 99889984146-8898--8889--9461------79999999988740-------------3641520466864168999
Q ss_pred -HHHHHHHHHHCCC-E-EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCH---HHH
Q ss_conf -9999998630597-5-899972100111103679999999974100357677758999516888444220076---999
Q gi|254780791|r 159 -IRDILQRISCRFP-L-RVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFND---EMI 232 (529)
Q Consensus 159 -~~D~~~~~~~r~p-~-~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~---e~l 232 (529)
+.-|...+.+..+ . ....+ .+......-..++..+-.. .+.+|+|+. .|| ..+
T Consensus 138 r~~g~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~-----~~~~~ai~~------------~~d~~A~g~ 196 (275)
T 3d8u_A 138 QLHGWQSAMIENYLTPDHFLTT----HEAPSSQLGAEGLAKLLLR-----DSSLNALVC------------SHEEIAIGA 196 (275)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEC----SSCCCHHHHHHHHHHHHTT-----CTTCCEEEE------------SSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEE----ECCCCHHHHHHHHHHHHHH-----HCCCCEEEE------------CCHHHHHHH
T ss_conf 9999999999749987616896----0465305689999999875-----024432230------------788999999
Q ss_pred HHHHHHCCCE-----EEEEECCCCCCHHHHHH
Q ss_conf 9999748904-----88520577752589886
Q gi|254780791|r 233 VRAIANSSIP-----IISAIGHETDWTLADYA 259 (529)
Q Consensus 233 araI~~~~iP-----VisgIGHE~D~Tl~D~V 259 (529)
.+++.+..+. -|.|++ |..++++.
T Consensus 197 ~~~l~~~g~~iP~di~vvg~d---~~~~~~~~ 225 (275)
T 3d8u_A 197 LFECHRRVLKVPTDIAIICLE---GSSMGEHA 225 (275)
T ss_dssp HHHHHHTTCCTTTTCEEEESS---CCHHHHTS
T ss_pred HHHHHHHCCCCCCEEEEEEEC---CHHHHHHC
T ss_conf 999997388788606999978---81888725
No 275
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1
Probab=42.84 E-value=13 Score=14.89 Aligned_cols=23 Identities=9% Similarity=0.184 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 22999999999997400171899
Q gi|254780791|r 15 YSVSELSYHLKHIVESNLSHVCV 37 (529)
Q Consensus 15 ~svs~l~~~i~~~l~~~~~~~~v 37 (529)
+-...+...|+.+++.....++|
T Consensus 29 iD~~~~~~~i~~~i~~Gv~gi~v 51 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYV 51 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 49999999999999869998997
No 276
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=42.65 E-value=13 Score=14.87 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=16.5
Q ss_pred EEEECCCCCEECCHHHCCCCCEEEEEEECEEEE
Q ss_conf 999848988957778929998699999110999
Q gi|254780791|r 463 TSIQDTNNNFITQKRNLATKTRILINFFDGQAN 495 (529)
Q Consensus 463 aiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~ 495 (529)
.+.+|++|.+.+. -.-.++.||++.
T Consensus 291 ~i~fd~~G~~~r~--------~~~~~~~~G~~v 315 (325)
T 2h4a_A 291 ILSADTNCNVERD--------MTWYQYQDGAIV 315 (325)
T ss_dssp EEEECTTCBEEEE--------CEEEEEETTEEE
T ss_pred EEEECCCCCCCCC--------CEEEEEECCEEE
T ss_conf 8999999987416--------369999899899
No 277
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=42.53 E-value=13 Score=14.85 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=52.0
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 6528999847842589999998630597-589997210011110367999999997410035767775899951688844
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
-.-|||++.|-...-+-.++..++++|| +++.+... ...++.+.+..- ++|+.|... .-...
T Consensus 4 G~lrIG~~~s~~~~~lp~~l~~f~~~~P~v~l~i~~~------~~~~l~~~l~~g----------~~D~~i~~~-~~~~~ 66 (219)
T 3jv9_A 4 GAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEEN------YTHTLTESLKRG----------DVDAIIVAE-PFQEP 66 (219)
T ss_dssp CCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEE------CHHHHHHHHHHT----------SSSEEEEES-SCCCT
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCHHHHHHHHCC----------CEEEEEECC-CCCCC
T ss_conf 2899997778899999999999999888928999988------737777656169----------588875026-87778
Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 422007699999997489048852057
Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 223 DL~~FN~e~laraI~~~~iPVisgIGH 249 (529)
.|+ ...++..++=+++.-+|
T Consensus 67 ---~~~----~~~l~~e~~~lv~~~~~ 86 (219)
T 3jv9_A 67 ---GIV----TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp ---TEE----EEEEEEEEEEEEEETTC
T ss_pred ---CEE----EEEECCCCEEEEEECCC
T ss_conf ---748----98503310899975664
No 278
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=42.50 E-value=13 Score=14.85 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=51.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 528999847842589999998630597-5899972100111103679999999974100357677758999516888444
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
.-+||+..|-....+-+++..+.++|| +++.+... -..++.++|..- .+|+.|+ .+-....+
T Consensus 12 ~l~ig~~~s~~~~~lp~~l~~f~~~~P~v~l~l~~~------~~~~~~~~L~~g----------~iD~~i~-~~~~~~~~ 74 (232)
T 3ho7_A 12 RLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEM------QTSRCLASLLSG----------EIDMAII-ASKAETEG 74 (232)
T ss_dssp EEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEEC------CHHHHHHHHHHT----------SCSEEEE-SSCCCCTT
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCHHHHHHHHCC----------CEEEEEE-ECCCCCCC
T ss_conf 999994377899999999999999888968999989------828999999779----------8428986-34765543
Q ss_pred HHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 220076999999974890488520577
Q gi|254780791|r 224 LWHFNDEMIVRAIANSSIPIISAIGHE 250 (529)
Q Consensus 224 L~~FN~e~laraI~~~~iPVisgIGHE 250 (529)
|- ...++..+.-++..=+|-
T Consensus 75 l~-------~~~l~~~~~~lv~~~~h~ 94 (232)
T 3ho7_A 75 LE-------DDLLYYEEFLGYVSRCEP 94 (232)
T ss_dssp EE-------EEEEEEEEEEEEECTTSG
T ss_pred CE-------EEEECCHHHHHHHCCCCC
T ss_conf 00-------342000102221113454
No 279
>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12}
Probab=42.34 E-value=13 Score=14.83 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=57.7
Q ss_pred CEEEEEEECCCCCC----CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 47999997352105----86681459889999996675288437999997101680079999999999765401226100
Q gi|254780791|r 62 SRIDAIIWKGTLNK----IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQH 137 (529)
Q Consensus 62 a~i~~~~~~~~~~~----~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~ 137 (529)
..+.++|+...... +...-..|..|++.+. +.+...+..++.+- +..-+..-+.|.+.|.
T Consensus 75 ~~vdgiIi~~~~~~~~~~~~~~~~~~~pvv~~~~---~~~~~~~~~v~~d~--------~~~~~~a~~~l~~~G~----- 138 (293)
T 2iks_A 75 RQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDR---ALDREHFTSVVGAD--------QDDAEMLAEELRKFPA----- 138 (293)
T ss_dssp TTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEES---CCCTTTCEEEEECH--------HHHHHHHHHHHHTSCC-----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEE---CCCCCCCCEEECCH--------HHHHHHHHHHHHHCCC-----
T ss_conf 6998999953654457999999847982899962---47877776375251--------7777777878874487-----
Q ss_pred CCCCCCCCCEEEEEECCCHH-HHHHHH----HHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 16310265289998478425-899999----9863059758999721001111036799999999741003576777589
Q gi|254780791|r 138 KNPIPFIPKIIAVITSPTGA-VIRDIL----QRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDII 212 (529)
Q Consensus 138 k~~lP~~p~~i~vits~~~a-~~~D~~----~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~i 212 (529)
++|++|+.+..- ...+.. ..+.+ +|..+.... .|.....+..++++.+-.. .+.+|+|
T Consensus 139 --------~~i~~i~~~~~~~~~~~r~~gf~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~-----~~~~~ai 201 (293)
T 2iks_A 139 --------ETVLYLGALPELSVSFLREQGFRTAWKD-DPREVHFLY---ANSYEREAAAQLFEKWLET-----HPMPQAL 201 (293)
T ss_dssp --------SSEEEEEECTTSHHHHHHHHHHHHHHTT-CCCCEEEEE---ESSSCHHHHHHHHHHHTTT-----SCCCSEE
T ss_pred --------CEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEECC---CCCCHHHHHHHHHHHHHHC-----CCCCCEE
T ss_conf --------3599983255554057899999999997-698601211---1011057788999987631-----5787431
Q ss_pred EEECCCCCHHHHHHCCHH---HHHHHHHHC--CCE---EEEEEC
Q ss_conf 995168884442200769---999999748--904---885205
Q gi|254780791|r 213 ILARGGGSIEDLWHFNDE---MIVRAIANS--SIP---IISAIG 248 (529)
Q Consensus 213 ii~RGGGS~eDL~~FN~e---~laraI~~~--~iP---VisgIG 248 (529)
+ |.||+ .+.+++.++ .+| -|.|++
T Consensus 202 ~------------~~~d~~a~g~~~~l~~~g~~vP~di~iig~d 233 (293)
T 2iks_A 202 F------------TTSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp E------------ESSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred C------------CCCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 1------------4888999999999998399999863999958
No 280
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=42.34 E-value=13 Score=14.83 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=35.8
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHH---HHHHHHHCCCEEEEEECCCCCCHHH-HHHHCCCCCCCH
Q ss_conf 7775899951688844422007699---9999974890488520577752589-886412377721
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEM---IVRAIANSSIPIISAIGHETDWTLA-DYAADLRAPTPT 268 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~---laraI~~~~iPVisgIGHE~D~Tl~-D~VAD~Ra~TPT 268 (529)
..||+|+|.=|-|+.++|+. ++. +++..++...|| .+|.|-+-.-.. ...-+.++-|..
T Consensus 74 ~~yDaliipGG~~~~~~l~~--~~~l~~~l~~~~~~~k~i-~aiC~G~~~La~aGlL~gr~~T~~~ 136 (190)
T 2vrn_A 74 SDYDGLLLPGGTVNPDKLRL--EEGAMKFVRDMYDAGKPI-AAICHGPWSLSETGIAQGLKMTSWS 136 (190)
T ss_dssp GGCSEEEECCCTHHHHHHTT--CHHHHHHHHHHHHTTCCE-EEC-CTTHHHHHTTTTTTCEECCCG
T ss_pred HHCEEEEECCCCCCHHHHCC--CHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHCCCCCCCEEEECC
T ss_conf 47649992687762212102--889999999987527740-0334289999977987798598474
No 281
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8}
Probab=42.30 E-value=13 Score=14.82 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=35.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---HH
Q ss_conf 899984784258999999863059758999721001111036799999999741003576777589995168884---44
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI---ED 223 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~---eD 223 (529)
.|||++=. | .+++.++.+++- .+++.+.. .+.+ ...+|.||| =|||+- .+
T Consensus 4 ~IGVl~l~-G-n~~~~~~al~~l-G~~~~~v~-------~~~d----------------l~~~d~lIl-PGG~~~~~~~~ 56 (191)
T 2ywd_A 4 VVGVLALQ-G-DFREHKEALKRL-GIEAKEVR-------KKEH----------------LEGLKALIV-PGGESTTIGKL 56 (191)
T ss_dssp CEEEECSS-S-CHHHHHHHHHTT-TCCCEEEC-------SGGG----------------GTTCSEEEE-CSSCHHHHHHH
T ss_pred EEEEEECC-C-CHHHHHHHHHHC-CCCEEEEC-------CHHH----------------HCCCCEEEE-CCCCHHHHHHH
T ss_conf 69999886-5-899999999987-99899989-------9899----------------607898999-89966899998
Q ss_pred HHHCCH-HHHHHHHHHCCCEEE
Q ss_conf 220076-999999974890488
Q gi|254780791|r 224 LWHFND-EMIVRAIANSSIPII 244 (529)
Q Consensus 224 L~~FN~-e~laraI~~~~iPVi 244 (529)
|...+. +.+...+....+||+
T Consensus 57 l~~~~~~~~~~~~~~~~~~PiL 78 (191)
T 2ywd_A 57 AREYGIEDEVRKRVEEGSLALF 78 (191)
T ss_dssp HHHTTHHHHHHHHHHTTCCEEE
T ss_pred HHHCCCHHHHHHHHHHCCCCEE
T ss_conf 7775786899999984799679
No 282
>3ofo_I 30S ribosomal protein S9; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_I* 3iy8_I 2wwl_I 3ofp_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I 2qbf_I 2qbh_I* 2qbj_I* 2qou_I* 2qow_I* ...
Probab=42.29 E-value=11 Score=15.36 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=17.6
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC
Q ss_conf 777589995168884442200769999999748
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANS 239 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~ 239 (529)
..||+.|.++|||-..- -+.+.-+|+.+
T Consensus 56 ~k~di~~~V~GGG~sgQ-----a~Air~aiara 83 (127)
T 3ofo_I 56 EKLDLYITVKGGGISGQ-----AGAIRHGITRA 83 (127)
T ss_dssp TSSEEEEEEESSCHHHH-----HHHHHHHHHHH
T ss_pred CCEEEEEEEECCCHHHH-----HHHHHHHHHHH
T ss_conf 63248999978976689-----99999999999
No 283
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}
Probab=42.27 E-value=13 Score=14.82 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999765401226100163102652899984784258999999863059758999721001111036799999999741
Q gi|254780791|r 121 EKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTL 200 (529)
Q Consensus 121 e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~ 200 (529)
.++...|.+.| .++||+|+..-. +.+.+-.++.-.++...-.-.|+-.+.-+..|++.++..
T Consensus 42 ~e~L~~Lk~~G--------------~~~ai~Tn~~~~----~~~~~l~~l~d~vv~~~d~~~~KP~P~~~~~a~~~lg~~ 103 (196)
T 2oda_A 42 QNALKALRDQG--------------MPCAWIDELPEA----LSTPLAAPVNDWMIAAPRPTAGWPQPDACWMALMALNVS 103 (196)
T ss_dssp HHHHHHHHHHT--------------CCEEEECCSCHH----HHHHHHTTTTTTCEECCCCSSCTTSTHHHHHHHHHTTCS
T ss_pred HHHHHHHHHCC--------------CEEEEECCCCHH----HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999759--------------848995487199----997511047999997774678899847999999995799
Q ss_pred CCCCCCCCCC-EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCC-----------CCCCCH
Q ss_conf 0035767775-8999516888444220076999999974890488520577752589886412-----------377721
Q gi|254780791|r 201 KEGRTCPRPD-IIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADL-----------RAPTPT 268 (529)
Q Consensus 201 ~~~~~~~~~D-~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~-----------Ra~TPT 268 (529)
.++ +|+| |-+.- |-.-|++. .+..=.++.-|+.-++|-.++-+-- +..-=.
T Consensus 104 -------~~~~~v~V---gD~~~------Di~aA~~A-G~~~v~v~~g~~~~g~~~~~~~~l~~~~~~~~~~~~~~~L~~ 166 (196)
T 2oda_A 104 -------QLEGCVLI---SGDPR------LLQSGLNA-GLWTIGLASCGPLCGLSPSQWQALNNAEREQRRAQATLKLYS 166 (196)
T ss_dssp -------CSTTCEEE---ESCHH------HHHHHHHH-TCEEEEESSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCEEEEE---ECCHH------HHHHHHHC-CCEEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf -------60428989---49888------99999978-983999946886667677776405777899999999999985
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 45676332346777669999988877
Q gi|254780791|r 269 GAAEMAVPVKEHLQSSLINLEARLNN 294 (529)
Q Consensus 269 aAAElavp~~~EL~~~L~~l~~RL~~ 294 (529)
|-|-.++.+..||..-|.++.+|+.+
T Consensus 167 aGad~vi~sl~eLp~il~~i~~r~~~ 192 (196)
T 2oda_A 167 LGVHSVIDHLGELESCLADIALRRSK 192 (196)
T ss_dssp TTCSEEESSGGGHHHHHHHHHHHHHT
T ss_pred CCCCEEECCHHHHHHHHHHHHHHHHC
T ss_conf 89989989999999999999999976
No 284
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=42.24 E-value=13 Score=14.82 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=42.7
Q ss_pred CCCEEEEEEC---CCHHHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 6528999847---84258999999863059758999721-----001111036799999999741003576777589995
Q gi|254780791|r 144 IPKIIAVITS---PTGAVIRDILQRISCRFPLRVIIFPV-----KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA 215 (529)
Q Consensus 144 ~p~~i~vits---~~~a~~~D~~~~~~~r~p~~~~~~p~-----~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~ 215 (529)
-|++||||-. ++..+ .-+++.+.+ ++++++.|+. .+.|..+-.++ .... ..+|+++|+
T Consensus 12 ~pksIAVVGaS~~~~k~g-~~v~~~L~~-~g~~~~~v~p~~~~~~i~G~~~y~sl-------~~ip-----~~vDlvvi~ 77 (145)
T 2duw_A 12 STRTIALVGASDKPDRPS-YRVMKYLLD-QGYHVIPVSPKVAGKTLLGQQGYATL-------ADVP-----EKVDMVDVF 77 (145)
T ss_dssp HCCCEEEESCCSCTTSHH-HHHHHHHHH-HTCCEEEECSSSTTSEETTEECCSST-------TTCS-----SCCSEEECC
T ss_pred CCCEEEEECCCCCCCCCH-HHHHHHHHH-CCCCEEEECCCCCCCCCCCEEEECCH-------HHCC-----CCCEEEEEE
T ss_conf 789599982059999839-999999996-79944887887544321881575246-------4589-----986499996
Q ss_pred CCCCCHHHH
Q ss_conf 168884442
Q gi|254780791|r 216 RGGGSIEDL 224 (529)
Q Consensus 216 RGGGS~eDL 224 (529)
+.-....++
T Consensus 78 ~p~~~v~~~ 86 (145)
T 2duw_A 78 RNSEAAWGV 86 (145)
T ss_dssp SCSTHHHHH
T ss_pred CCHHHHHHH
T ss_conf 373258999
No 285
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=42.02 E-value=13 Score=14.79 Aligned_cols=35 Identities=31% Similarity=0.593 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 10265289998478425899999986305975899
Q gi|254780791|r 141 IPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVI 175 (529)
Q Consensus 141 lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~ 175 (529)
-|.-|.||||.-|-+|..++-+++-.....+.+|.
T Consensus 8 ~~~~p~riavl~SG~Gsnl~aLi~~~~~~~~~~iv 42 (215)
T 3da8_A 8 PPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVV 42 (215)
T ss_dssp CCCSSEEEEEEESSCCHHHHHHHHHSSTTCSEEEE
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 99998889999836826599999963779997799
No 286
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264}
Probab=41.84 E-value=13 Score=14.77 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=10.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8889862299999999999740
Q gi|254780791|r 9 SLDHPEYSVSELSYHLKHIVES 30 (529)
Q Consensus 9 ~~~~~~~svs~l~~~i~~~l~~ 30 (529)
++++|. -+++...+...++.
T Consensus 17 ~~~~~f--~~~l~~gi~~~a~~ 36 (291)
T 3egc_A 17 DIENVF--FAEVASGVESEARH 36 (291)
T ss_dssp CTTSHH--HHHHHHHHHHHHHH
T ss_pred CCCCHH--HHHHHHHHHHHHHH
T ss_conf 998889--99999999999998
No 287
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=41.76 E-value=13 Score=14.76 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.7
Q ss_pred HHHCCHHHHHHHH
Q ss_conf 2200769999999
Q gi|254780791|r 224 LWHFNDEMIVRAI 236 (529)
Q Consensus 224 L~~FN~e~laraI 236 (529)
++.|--..|++.+
T Consensus 227 ~i~faGPrVi~~~ 239 (285)
T 2f9i_B 227 LIGFAGRRVIEQT 239 (285)
T ss_dssp BEESSCHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 8998787578786
No 288
>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=41.60 E-value=13 Score=14.74 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=33.2
Q ss_pred CCEEEEEECCCHH-HHHHHHHHHHHCCCEEEEEEECCC--CCC---CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 5289998478425-899999986305975899972100--111---1036799999999741003576777589995168
Q gi|254780791|r 145 PKIIAVITSPTGA-VIRDILQRISCRFPLRVIIFPVKV--QGD---ECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529)
Q Consensus 145 p~~i~vits~~~a-~~~D~~~~~~~r~p~~~~~~p~~v--QG~---~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529)
=.|||+|+..+.- +=.||-+.+-+ .+.+ +-+.+ ... +.-.++...+..+...- ...+|+|+.+--.
T Consensus 5 R~riGlivPstn~~vE~e~~~m~p~--gV~~--h~sRi~~~~~~~~e~l~~m~~~l~~a~~l~----~~~~d~i~~gcTs 76 (223)
T 2dgd_A 5 RGRIGVILPANNAGMEYDLWKMAPE--GVSI--HSTRMKPTKGCEPENVEEFEKELKYSYSLL----AEVSDIIIYGRTY 76 (223)
T ss_dssp SEEEEEEEETTCCSHHHHHHHHCCT--TEEE--EEEEECCCSSSSCSCHHHHHHHHHHHHHHH----TTTCSEEEECCCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHCCC--CCEE--EEECCCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCCEEEECCCC
T ss_conf 7468999789997479999986678--8169--976775789888778999987668888644----5545767877888
Q ss_pred CCH
Q ss_conf 884
Q gi|254780791|r 219 GSI 221 (529)
Q Consensus 219 GS~ 221 (529)
||.
T Consensus 77 gs~ 79 (223)
T 2dgd_A 77 GTH 79 (223)
T ss_dssp TTT
T ss_pred CHH
T ss_conf 625
No 289
>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=41.38 E-value=13 Score=14.72 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=42.7
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 63102652899984784258999999863059758999721001111036799999999741003576777589995168
Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529)
.|-+.--.+|+||---+|= .+-+.+.|++. ..++.++|- +..+.+| ..+|.|||.=|.
T Consensus 7 ~~~~~~m~~i~iiD~g~~~-~~~i~r~L~~l-G~~~~vv~~----~~~~~~l----------------~~~dgiIl~GG~ 64 (212)
T 2a9v_A 7 HHHHHHMLKIYVVDNGGQW-THREWRVLREL-GVDTKIVPN----DIDSSEL----------------DGLDGLVLSGGA 64 (212)
T ss_dssp ---CCCCCBEEEEEESCCT-TCHHHHHHHHT-TCBCCEEET----TSCGGGG----------------TTCSEEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCH-HHHHHHHHHHC-CCEEEEEEC----CCCHHHH----------------HCCCEEEECCCC
T ss_conf 4250676679999998768-99999999978-983899969----7999998----------------369919997999
Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf 88444220076999999974890488
Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVi 244 (529)
|+..|=.. ....+.+.+.+..+||+
T Consensus 65 ~~~~~~~~-~~~~l~~~~~~~~~PiL 89 (212)
T 2a9v_A 65 PNIDEELD-KLGSVGKYIDDHNYPIL 89 (212)
T ss_dssp SCGGGTGG-GHHHHHHHHHHCCSCEE
T ss_pred CCCCCCHH-HHHHHHHHHHHCCCCEE
T ss_conf 84343437-89999999985799899
No 290
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=41.08 E-value=13 Score=14.68 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=75.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCE-EEEEEECCCCEEEEEEECC-CCCCCCCCCCCCC
Q ss_conf 888898622999999999997400-171899999705435688862-7999874894799999735-2105866814598
Q gi|254780791|r 8 NSLDHPEYSVSELSYHLKHIVESN-LSHVCVRGEISGYRGIHSSGH-AYFSLKDNHSRIDAIIWKG-TLNKIEFLPEEGI 84 (529)
Q Consensus 8 ~~~~~~~~svs~l~~~i~~~l~~~-~~~~~v~gEis~~~~~~~sGH-~Yf~lkd~~a~i~~~~~~~-~~~~~~~~~~~G~ 84 (529)
|..++| ..+++...|...++.. |. +.--.++.. +. .. -+++.- -.-.++++++-+ ......+..+.+.
T Consensus 10 p~~~~~--~~~~~~~~i~~~~~~~gy~---~~i~~~~~~--~~-~~~~~l~~l-~~~~vdgiI~~~~~~~~~~~~~~~~~ 80 (255)
T 1byk_A 10 TRLDSL--SENLAVQTMLPAFYEQGYD---PIMMESQFS--PQ-LVAEHLGVL-KRRNIDGVVLFGFTGITEEMLAHWQS 80 (255)
T ss_dssp SCTTCH--HHHHHHHHHHHHHHHHTCE---EEEEECTTC--HH-HHHHHHHHH-HTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred CCCCCH--HHHHHHHHHHHHHHHCCCE---EEEEECCCC--HH-HHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHCCC
T ss_conf 998898--9999999999999985998---999948999--89-999999999-95699899985899656999997799
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCH--HH----
Q ss_conf 899999966752884379999971016800799999999997654012261001631026528999847842--58----
Q gi|254780791|r 85 EFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTG--AV---- 158 (529)
Q Consensus 85 ~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~--a~---- 158 (529)
.+++.++ ..+. +..+. ++.. ...+..-+.|.+.| .++||+|+.+.. ..
T Consensus 81 p~v~i~~---~~~~--~~~V~--~d~~------~~~~~~~~~l~~~G-------------~~~I~~i~~~~~~~~~~~~R 134 (255)
T 1byk_A 81 SLVLLAR---DAKG--FASVC--YDDE------GAIKILMQRLYDQG-------------HRNISYLGVPHSDVTTGKRR 134 (255)
T ss_dssp SEEEESS---CCSS--CEEEE--ECHH------HHHHHHHHHHHHTT-------------CCCEEEECCCTTSTTTTHHH
T ss_pred CEEEEEC---CCCC--CCEEE--ECHH------HHHHHHHHHHHHCC-------------CCEEEECCCCCCCCHHHHHH
T ss_conf 9899934---7899--98899--8779------99999999998649-------------95699777785655278999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 99999986305975899972100111103679999999974100357677758999516888444220076999999974
Q gi|254780791|r 159 IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIAN 238 (529)
Q Consensus 159 ~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~ 238 (529)
+.-|...++.. +++. ..+.+.....+ +.+.+..+-. +++|+|+.. -|-+++ .+.+++..
T Consensus 135 ~~g~~~~~~~~-~i~~----~~~~~~~~~~~---~~~~~~~~l~----~~~~ai~~~------~D~~A~---g~~~~l~~ 193 (255)
T 1byk_A 135 HEAYLAFCKAH-KLHP----VAALPGLAMKQ---GYENVAKVIT----PETTALLCA------TDTLAL---GASKYLQE 193 (255)
T ss_dssp HHHHHHHHHHT-TCCC----EEECCCSCHHH---HHHHSGGGCC----TTCCEEEES------SHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHC-CCCC----CEECCCCCHHH---HHHHHHHHHC----CCCCCCCCC------CHHHHH---HHHHHHHH
T ss_conf 99999999986-9984----12027777788---9999998506----567613234------258999---99999998
Q ss_pred CC--CEEEEEECCCCCCHHHHHH
Q ss_conf 89--0488520577752589886
Q gi|254780791|r 239 SS--IPIISAIGHETDWTLADYA 259 (529)
Q Consensus 239 ~~--iPVisgIGHE~D~Tl~D~V 259 (529)
.. .|-|.|++ |..++++.
T Consensus 194 ~g~~d~~iig~d---~~~~~~~~ 213 (255)
T 1byk_A 194 QRIDTLQLASVG---NTPLMKFL 213 (255)
T ss_dssp TTCCSCEEEEEC---CCHHHHHH
T ss_pred CCCCCCEEEEEC---CHHHHHHC
T ss_conf 199987299999---82899833
No 291
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: YES; 1.60A {Streptomyces avermitilis ma-4680}
Probab=40.94 E-value=11 Score=15.40 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCH-HHHHHH----CCCCCCCHHHHHHHC
Q ss_conf 04885205777525-898864----123777214567633
Q gi|254780791|r 241 IPIISAIGHETDWT-LADYAA----DLRAPTPTGAAEMAV 275 (529)
Q Consensus 241 iPVisgIGHE~D~T-l~D~VA----D~Ra~TPTaAAElav 275 (529)
=||+..+||-+|.. -+.+|. -.|.|+||-.|-..+
T Consensus 181 kPiyVS~Gh~i~Le~A~~iv~~~~~~~RlPEP~R~Ad~~s 220 (237)
T 3goc_A 181 KPVFVSVGHRVDLDHACAHTLALTPKYRIPETTRRADSLC 220 (237)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHTCSSCSSCHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 7889938968899999999999741799987899999999
No 292
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=40.88 E-value=13 Score=14.66 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=54.1
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHH---CCCEEEEEEE----CCCCCCC------------------------------
Q ss_conf 6528999847-842589999998630---5975899972----1001111------------------------------
Q gi|254780791|r 144 IPKIIAVITS-PTGAVIRDILQRISC---RFPLRVIIFP----VKVQGDE------------------------------ 185 (529)
Q Consensus 144 ~p~~i~vits-~~~a~~~D~~~~~~~---r~p~~~~~~p----~~vQG~~------------------------------ 185 (529)
--|||||+|| -.+.++...++-+-+ .+.++|+-+. =.+.|..
T Consensus 209 ~kKrIaILTSGGDaPGmNaaIraVVr~a~~~G~eV~Gi~~Gy~GLv~g~~~i~~L~~~~V~~i~~~GGTiLGTsR~~~f~ 288 (989)
T 3opy_A 209 GKKKIAIITSGGDAPGMNAAVRAVTRAGIFYGCKVYACYEGYTGLVKGGDMLKELQWQDVRGLLSIGGTIIGTARCKEFR 288 (989)
T ss_dssp CSEEEEEEECSSCCTTHHHHHHHHHHHHHHTTEEEEEECTHHHHHHSCSTTEEEECTTTTTTGGGCCSCSSCCCCSSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCEEECCHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 97089998867775558899999999998779999998546587726997657799999866984898753068898664
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH------------HHHHHH--HHCCCEEEEEE
Q ss_conf 036799999999741003576777589995168884442200769------------999999--74890488520
Q gi|254780791|r 186 CPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE------------MIVRAI--ANSSIPIISAI 247 (529)
Q Consensus 186 a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e------------~laraI--~~~~iPVisgI 247 (529)
......++.+.+... ..|.+|++=|-||+.--..|-+| .+.... ....+|||-=.
T Consensus 289 ~~egr~ka~~nL~~~-------gId~LivIGGDGSltgA~~l~~e~~~ll~el~~~~~It~e~~~~~~~i~VVGIP 357 (989)
T 3opy_A 289 ERWGRLQACYNMVSN-------GIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLV 357 (989)
T ss_dssp SHHHHHHHHHHHHHT-------TCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEE
T ss_pred CHHHHHHHHHHHHHC-------CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 776899999999986-------999899989847899999987640122222200246779998628996499944
No 293
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.88 E-value=12 Score=14.90 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEE-------CCCCCCCH
Q ss_conf 026528999847842589999998630597-5899972-------10011110
Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFP-------VKVQGDEC 186 (529)
Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p-------~~vQG~~a 186 (529)
|...-+|=||++|+|+|-.=+++.|.+++| +...+.. .-+.|...
T Consensus 16 ~~~~gkiivi~GpsGsGK~Tl~~~L~~~~~~~~~~v~~tTR~~r~~e~~g~dy 68 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDY 68 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTB
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 87798089998989889999999999668997177644378999875568531
No 294
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=40.73 E-value=13 Score=14.64 Aligned_cols=55 Identities=7% Similarity=0.044 Sum_probs=31.0
Q ss_pred EEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 9999970543568886279998748947999997352105866814598899999966752884
Q gi|254780791|r 36 CVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSS 99 (529)
Q Consensus 36 ~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g 99 (529)
.+.|.|.-|.. ..|.=|.+- | +.. =++|..+.-.-.-.|+.|+.|.+.-. -.++|
T Consensus 2 ~~~G~Vk~~~~--~kGfGFI~~-~-~G~--DvF~H~s~l~g~~~l~~G~~V~F~~~---~~~kG 56 (74)
T 2k5n_A 2 AMNGTITTWFK--DKGFGFIKD-E-NGD--NRYFHVIKVANPDLIKKDAAVTFEPT---TNNKG 56 (74)
T ss_dssp CEEEEEEEEET--TTTEEEEEE-S-SSC--EEEEEGGGBSSGGGCCTTCEEEEEEE---ECSSS
T ss_pred CCCEEEEEEEC--CCCEEEEEE-C-CCC--CEEEEEEEECCCCCCCCCCEEEEEEE---ECCCC
T ss_conf 85559999989--999689874-6-998--39999872079885599989999999---89998
No 295
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=40.72 E-value=13 Score=14.64 Aligned_cols=85 Identities=18% Similarity=0.344 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHH-CC-CCEEEEEEECC--CCCCCCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 62299999999999740-01-71899999705--43568886-2799987489479999973521058668145988999
Q gi|254780791|r 14 EYSVSELSYHLKHIVES-NL-SHVCVRGEISG--YRGIHSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLV 88 (529)
Q Consensus 14 ~~svs~l~~~i~~~l~~-~~-~~~~v~gEis~--~~~~~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~ 88 (529)
-||.||+...-...-.. .. ..|.|-|-|-. +. +...| -+.|.|.|..+.|. |.|.+. ++-..++|..|+|
T Consensus 8 F~TPSEv~~~~~~~~~~~~~gk~vRvgG~V~~gSi~-~~~~~~~~~F~itD~~~~i~-V~Y~G~---lPdlF~eg~~VVv 82 (136)
T 1sr3_A 8 FYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQ-RDPNSLKVTFTIYDAEGSVD-VSYEGI---LPDLFREGQGVVV 82 (136)
T ss_dssp CBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTCE-ECSSSSEEEEEEECSSCEEE-EEEESC---CCTTCCTTSEEEE
T ss_pred EECHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEEEE-ECCCCCEEEEEEECCCCEEE-EEECCC---CCHHHCCCCEEEE
T ss_conf 999899616444322455679789975799731588-72897589999986884699-998576---9645417980999
Q ss_pred EEEEEEECCCCEEEEEEEEE
Q ss_conf 99966752884379999971
Q gi|254780791|r 89 IGKITTFPGSSKYQIIIESL 108 (529)
Q Consensus 89 ~g~~~~y~~~g~~ql~v~~i 108 (529)
.|++. ..|. |.++.|
T Consensus 83 eG~~~---~~~~--f~A~~v 97 (136)
T 1sr3_A 83 QGELE---KGNH--ILAKEV 97 (136)
T ss_dssp EEEEC---SSSE--EEESSC
T ss_pred EEEEC---CCCE--EEEEEE
T ss_conf 99988---8998--999999
No 296
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=40.66 E-value=10 Score=15.59 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=29.0
Q ss_pred CCCCCCCCCEE-EEEECCCHHHHHHHHHHHHHCCCEE
Q ss_conf 16310265289-9984784258999999863059758
Q gi|254780791|r 138 KNPIPFIPKII-AVITSPTGAVIRDILQRISCRFPLR 173 (529)
Q Consensus 138 k~~lP~~p~~i-~vits~~~a~~~D~~~~~~~r~p~~ 173 (529)
-.|.|..|+.| -||.+|.|||-.-+...|+.+|++.
T Consensus 7 ~~~~~~~p~~iriii~GpPGSGK~T~a~~La~~~g~~ 43 (233)
T 1ak2_A 7 AEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp -------CCCCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 7898889987379998999998799999999986982
No 297
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=40.64 E-value=13 Score=14.63 Aligned_cols=81 Identities=14% Similarity=0.285 Sum_probs=58.6
Q ss_pred CEEEEEECCC-------------HHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 2899984784-------------2589999998630---59758999721001111036799999999741003576777
Q gi|254780791|r 146 KIIAVITSPT-------------GAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRP 209 (529)
Q Consensus 146 ~~i~vits~~-------------~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~ 209 (529)
.+|.||-.|+ .--+.|+...+.. ...+++..|-+=-.| +++..|..... .+
T Consensus 8 mkILiinGPNLnlLG~Re~~iYG~~tL~~i~~~~~~~a~~~~i~~~~~QSN~Eg-----eli~~i~~~~~--------~~ 74 (153)
T 3lwz_A 8 FHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEH-----ALIDSIHQARG--------NT 74 (153)
T ss_dssp EEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHH-----HHHHHHHHHTT--------TC
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH-----HHHHHHHHHHC--------CC
T ss_conf 708999088810158888975772479999999999998759817895042789-----99999999746--------57
Q ss_pred CEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 589995168884442200769999999748904885
Q gi|254780791|r 210 DIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 210 D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
|.|||-=|| |..-+..+..|+..+++|+|-
T Consensus 75 dgiIiNPga------~ThtS~al~DAl~~~~~p~iE 104 (153)
T 3lwz_A 75 DFILINPAA------FTHTSVALRDALLGVQIPFIE 104 (153)
T ss_dssp SEEEEECGG------GGGTCHHHHHHHHHHTCCEEE
T ss_pred CEEEECCCC------CEEEHHHHHHHHHHCCCCEEE
T ss_conf 669974764------032037799999845999899
No 298
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3ch6_A* 2irw_A* 2ilt_A* 2bel_A* 1y5m_A* 1y5r_A* 1xse_A* ...
Probab=40.53 E-value=13 Score=14.61 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=74.2
Q ss_pred CCCCC--CCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 66814--5988999999667528843799999710168007999999999976540122610016310265289998478
Q gi|254780791|r 77 EFLPE--EGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSP 154 (529)
Q Consensus 77 ~~~~~--~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~ 154 (529)
.|+|+ .|-.++|+|.= +|+|. .+-++|.++|+- -++++.
T Consensus 20 ~f~~~~L~GK~alITGas------------------sGIG~------aiA~~la~~G~~---------------Vvl~~R 60 (286)
T 1xu9_A 20 EFRPEMLQGKKVIVTGAS------------------KGIGR------EMAYHLAKMGAH---------------VVVTAR 60 (286)
T ss_dssp CCCGGGGTTCEEEESSCS------------------SHHHH------HHHHHHHHTTCE---------------EEEEES
T ss_pred CCCCCCCCCCEEEEECCC------------------CHHHH------HHHHHHHHCCCE---------------EEEEEC
T ss_conf 679544596999996878------------------49999------999999987998---------------999989
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHH
Q ss_conf 42589999998630597589997210011110367999999997410035767775899951688844422007699999
Q gi|254780791|r 155 TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVR 234 (529)
Q Consensus 155 ~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~lar 234 (529)
+-..+.+....+.+.++..+..+.+-+........++....... ...|++|..=|++....++.++.+..-+
T Consensus 61 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------g~id~lvnnag~~~~~~~~~~~~~~~~~ 132 (286)
T 1xu9_A 61 SKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM--------GGLDMLILNHITNTSLNLFHDDIHHVRK 132 (286)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH--------TSCSEEEECCCCCCCCCCCCSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHC--------CCCCEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 88999999999987459727998503121899999887765206--------9864898646457877766799999999
Q ss_pred H
Q ss_conf 9
Q gi|254780791|r 235 A 235 (529)
Q Consensus 235 a 235 (529)
.
T Consensus 133 ~ 133 (286)
T 1xu9_A 133 S 133 (286)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 299
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=40.43 E-value=13 Score=14.60 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 28999847842589999998630597-58999721001111036799999999741003576777589995168884442
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
-|||+..+.....+-+++..+.++|| +++.+.- ....++..++..- .+|+.++.. ....+++
T Consensus 7 lrIg~~~~~~~~~lp~~l~~f~~~~P~v~i~i~~------~~~~~l~~~l~~~----------~~d~~~~~~-~~~~~~~ 69 (219)
T 1i6a_A 7 LHIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHE------AQTHQLLAQLDSG----------KLDAVILAL-VKESEAF 69 (219)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEE------CCHHHHHHHHHHT----------SCSEEEEEC-CGGGTTS
T ss_pred EEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE------CCCHHHHHHHHCC----------CCHHHHCCC-CCCCCCC
T ss_conf 9998377799999999999999988896899998------8848888887536----------401010235-5323453
Q ss_pred HHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 20076999999974890488520577
Q gi|254780791|r 225 WHFNDEMIVRAIANSSIPIISAIGHE 250 (529)
Q Consensus 225 ~~FN~e~laraI~~~~iPVisgIGHE 250 (529)
. ...++..++=++.+-+|.
T Consensus 70 ~-------~~~l~~~~~~~v~~~~hp 88 (219)
T 1i6a_A 70 I-------EVPLFDEPMLLAIYEDHP 88 (219)
T ss_dssp E-------EEEEEEEEEEEEEETTSG
T ss_pred C-------CCCCCCCCEEEEEECCCH
T ss_conf 2-------343445536999925971
No 300
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=39.66 E-value=14 Score=14.51 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCC
Q ss_conf 769999999748904885205777525898864123777
Q gi|254780791|r 228 NDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPT 266 (529)
Q Consensus 228 N~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~T 266 (529)
+.++-+..+.. -++||+|||+---.+.-..-+++.|+
T Consensus 28 ~~~Ea~e~l~~--~~~iSaIGH~aTA~lls~llg~~i~~ 64 (114)
T 2x4i_A 28 DRLEFCENIDN--EDIINSIGHDSTIQLINSLCGTTFQK 64 (114)
T ss_dssp CHHHHHHHHCC--TTEEECCCCHHHHHHHHHHHCCCCCC
T ss_pred CHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf 88999987538--86688636488999999985871343
No 301
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=39.65 E-value=5.8 Score=17.86 Aligned_cols=137 Identities=18% Similarity=0.098 Sum_probs=56.6
Q ss_pred CCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHH
Q ss_conf 14598899999966752884379999971016800799999999997654012261001631026528999847842589
Q gi|254780791|r 80 PEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVI 159 (529)
Q Consensus 80 ~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~ 159 (529)
.+.|.-+++.+.- +.+...|..+.. +.. ..-+.+-+.|.+.| .++|++|+++.....
T Consensus 89 ~~~~ip~V~~~~~--~~~~~~~~~V~~--D~~------~~~~~~~~~L~~~g-------------~~~i~~i~~~~~~~~ 145 (301)
T 3miz_A 89 GDVSIPTVMINCR--PQTRELLPSIEP--DDY------QGARDLTRYLLERG-------------HRRIGYIRLNPILLG 145 (301)
T ss_dssp TTCCCCEEEEEEE--CSSTTSSCEEEE--CHH------HHHHHHHHHHHTTT-------------CCSEEEEECCTTSHH
T ss_pred HHCCCCEEEEEEC--CCCCCCCCEEEE--CHH------HHHHHHHHHHHHHC-------------CCEEEEECCCCCCCC
T ss_conf 8449998999612--578888878997--799------99999999999818-------------975999847854564
Q ss_pred H-H----HHHHHHHC---CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHH
Q ss_conf 9-9----99986305---97-58999721001111036799999999741003576777589995168884442200769
Q gi|254780791|r 160 R-D----ILQRISCR---FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDE 230 (529)
Q Consensus 160 ~-D----~~~~~~~r---~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e 230 (529)
. + |...+++. ++ +.+ .+....-.........+++..+-... +.+|+|+. .||+
T Consensus 146 ~~~r~~g~~~~l~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~ai~~------------~~d~ 207 (301)
T 3miz_A 146 AELRLDAFRRTTSEFGLTENDLSI-SLGMDGPVGAENNYVFAAATEMLKQD-----DRPTAIMS------------GNDE 207 (301)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-EECEESSTTSCEECHHHHHHHHHTST-----TCCSEEEE------------SSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHCC-----CCCCCCCC------------CCHH
T ss_conf 146659999999985998676246-64034530466779999999999559-----99983003------------8899
Q ss_pred H---HHHHHHHCCC--E-EEEEECCCCCCHHHHH
Q ss_conf 9---9999974890--4-8852057775258988
Q gi|254780791|r 231 M---IVRAIANSSI--P-IISAIGHETDWTLADY 258 (529)
Q Consensus 231 ~---laraI~~~~i--P-VisgIGHE~D~Tl~D~ 258 (529)
. +.++..+..+ | =|+=||+. |...+++
T Consensus 208 ~a~g~~~~l~~~g~~vp~di~ivg~d-~~~~~~~ 240 (301)
T 3miz_A 208 MAIQIYIAAMALGLRIPQDVSIVGFD-DFRTVTM 240 (301)
T ss_dssp HHHHHHHHHHTTTCCHHHHCEEECSB-CCHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECC-CHHHHHH
T ss_conf 99999999998199889630024127-7688996
No 302
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis atcc 12228}
Probab=39.64 E-value=14 Score=14.51 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 9999999976540122610016310265289998478425899999986305975-899972100111103679999999
Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVKVQGDECPKEIANAILQ 196 (529)
Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~vQG~~a~~~i~~ai~~ 196 (529)
...+.+.+.|.-.| +=.|.-.-|-++.+.|....-..+.. .+-....|. .+.+.|.. ..+.++.++||+.
T Consensus 107 ~ai~~~~~~l~i~~-----~VlP~T~~~v~l~~~~~dG~~~~gE~-~i~~~~~~~~~~~~~~~~---~~~~p~~~~aI~~ 177 (332)
T 2ppv_A 107 HAIKELSKVLNIKG-----QVIPSTNASVQLNAVMEDGEIVHGET-NIPKTHKKIDRVFLEPSD---VEPMNEAIEALEQ 177 (332)
T ss_dssp HHHHHHHHHTTCSS-----EEEESCSSCCEEEEEETTSCEEESTT-TSSSSCSCEEEEEEESCC---CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-----EEECCCCCCEEEEEEECCCCEECCEE-EEEECCCCCCEEECCCCC---CCCCHHHHHHHHH
T ss_conf 99999999868997-----28716589527999977998776867-212134553136514677---7889899999982
Q ss_pred HHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEE--EEEECC---C-CCCHHHHHHHCC
Q ss_conf 97410035767775899951688844422007699999997489048--852057---7-752589886412
Q gi|254780791|r 197 LNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPI--ISAIGH---E-TDWTLADYAADL 262 (529)
Q Consensus 197 ~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPV--isgIGH---E-~D~Tl~D~VAD~ 262 (529)
.|+|||+=|-==..=+-.+--..+..||.+++-|+ |+.++- | ..+|+.|+|.-+
T Consensus 178 ------------AD~IiigPgs~~tSI~P~L~v~gi~~ai~~s~a~kv~i~nl~t~~geT~g~~~~d~v~~i 237 (332)
T 2ppv_A 178 ------------ADLIVLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVMTQPGETDNYDVKEHIDAL 237 (332)
T ss_dssp ------------CSEEEECSSCCCCCCHHHHTSHHHHHHHHHCCSCEEEECCSBCCTTTCTTCCHHHHHHHH
T ss_pred ------------CCEEEECCCCCHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf ------------890898688518777667347069999984899889996687886555799899999999
No 303
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=39.50 E-value=11 Score=15.26 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=7.0
Q ss_pred EEEEEECCCCCC
Q ss_conf 488520577752
Q gi|254780791|r 242 PIISAIGHETDW 253 (529)
Q Consensus 242 PVisgIGHE~D~ 253 (529)
+.||+|||+---
T Consensus 38 ~~iSaIGH~aTA 49 (109)
T 2j6b_A 38 QFTSAIGHQATA 49 (109)
T ss_dssp CEEECBCSHHHH
T ss_pred CEEEEECCHHHH
T ss_conf 657741659899
No 304
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=39.27 E-value=14 Score=14.46 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCEEEEEECCCHH-----HHHHHHHHHHHC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----
Q ss_conf 5289998478425-----899999986305-97-589997210011110367999999997410035767775899----
Q gi|254780791|r 145 PKIIAVITSPTGA-----VIRDILQRISCR-FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII---- 213 (529)
Q Consensus 145 p~~i~vits~~~a-----~~~D~~~~~~~r-~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii---- 213 (529)
-.|||||.|.=-. -+...++.+... .+ .++.+|-++ | +-||--+++.+-..+ +||.||
T Consensus 10 ~~rI~IV~s~~n~~i~~~l~~~a~~~L~~~g~~~~~i~~~~VP--G---a~EiP~a~~~l~~~~------~~davIalG~ 78 (158)
T 1di0_A 10 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVP--G---AYEIPLHAKTLARTG------RYAAIVGAAF 78 (158)
T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEES--S---GGGHHHHHHHHHHTS------CCSEEEEEEE
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC--C---HHHHHHHHHHHHHCC------CCCEEEEEEE
T ss_conf 9899999832779999999999999999849993636999858--5---647999999998458------9888999999
Q ss_pred EECCCCCHHHHHHC-CHHHHHHHHHHCCCEEEEEEC
Q ss_conf 95168884442200-769999999748904885205
Q gi|254780791|r 214 LARGGGSIEDLWHF-NDEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 214 i~RGGGS~eDL~~F-N~e~laraI~~~~iPVisgIG 248 (529)
|+||+=.--|+.+= =...|.+--....+||+.||=
T Consensus 79 VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gVL 114 (158)
T 1di0_A 79 VIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVL 114 (158)
T ss_dssp CCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 975997468999999999999986532997799965
No 305
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, structure, hydrolase; NMR {Methanosarcina mazei GO1}
Probab=39.14 E-value=14 Score=14.45 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=49.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 89998478425899999986305975899972100111103679999999974100357677758999516888444220
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
+||||+.+... .-.+- .++. .+|++ ..+.++.+++..+-... ++-+|+| .|+++.
T Consensus 2 KIaVIGd~dtv------~GFrL-aGi~-~v~~~-----~~~ee~~~~~~~~~~~~------~~gII~i------te~~~~ 56 (101)
T 2ov6_A 2 ELAVIGKSEFV------TGFRL-AGIS-KVYET-----PDIPATESAVRSVLEDK------SVGILVM------HNDDIG 56 (101)
T ss_dssp CEEEEECHHHH------HHHHH-HTCC-EEEEC-----CSTTTHHHHHHHHHHHT------SSSEEEE------EHHHHT
T ss_pred EEEEECCHHHH------HHHHH-CCCC-EEECC-----CCHHHHHHHHHHHHHCC------CEEEEEE------EHHHHH
T ss_conf 89999488988------99997-1887-11679-----99899999999997079------8699997------089998
Q ss_pred CCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 0769999999748904885205
Q gi|254780791|r 227 FNDEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 227 FN~e~laraI~~~~iPVisgIG 248 (529)
--.+.+-+...++.+|+|..||
T Consensus 57 ~i~~~i~~~~~~~~~P~iv~Ip 78 (101)
T 2ov6_A 57 NLPEVLRKNLNESVQPTVVALG 78 (101)
T ss_dssp TCTTTTHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEEC
T ss_conf 7689999997568703799868
No 306
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=39.12 E-value=14 Score=14.45 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=50.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 26528999847842589999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
..|.+|-|| .+...+..++..+=+.++++++ .+.--|+ +||+.+.... +.+|+|++
T Consensus 34 ~~p~~ILiV--DD~~~~~~~l~~~L~~~g~~vv--~~a~~g~-------eAl~~~~~~~-----p~~dlvil-------- 89 (157)
T 3hzh_A 34 GIPFNVLIV--DDSVFTVKQLTQIFTSEGFNII--DTAADGE-------EAVIKYKNHY-----PNIDIVTL-------- 89 (157)
T ss_dssp TEECEEEEE--CSCHHHHHHHHHHHHHTTCEEE--EEESSHH-------HHHHHHHHHG-----GGCCEEEE--------
T ss_pred CCCCEEEEE--ECCHHHHHHHHHHHHHCCCEEE--EEECCHH-------HHHHHHHHCC-----CCCEEEEE--------
T ss_conf 998889999--6999999999999998799899--9989999-------9999998419-----89189998--------
Q ss_pred HHH--HCCHHHHHHHHHHC--CCEE--EEEECCC
Q ss_conf 422--00769999999748--9048--8520577
Q gi|254780791|r 223 DLW--HFNDEMIVRAIANS--SIPI--ISAIGHE 250 (529)
Q Consensus 223 DL~--~FN~e~laraI~~~--~iPV--isgIGHE 250 (529)
|+. -+|-.++++.|-+. .+|| +||.+.+
T Consensus 90 D~~mP~~dG~e~~~~ir~~~~~~piI~lT~~~~~ 123 (157)
T 3hzh_A 90 XITMPKMDGITCLSNIMEFDKNARVIMISALGKE 123 (157)
T ss_dssp CSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCH
T ss_pred ECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 5689999789999999971999976876327999
No 307
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=39.01 E-value=14 Score=14.43 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=46.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHH-CCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 8999847842589999998630-597-58999721001111036799999999741003576777589995168884442
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISC-RFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~-r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
-|+||+..+..-...+...+.+ .++ ++|. ....+|...| +.+.. . .+|++| |-|++-|.
T Consensus 19 iipvlr~~~~~~~~~~~~al~~~Gi~~iEIT-----l~t~~a~~~i-~~l~~---~-------~p~~~v---GaGTVl~~ 79 (224)
T 1vhc_A 19 IVPVIALDNADDILPLADTLAKNGLSVAEIT-----FRSEAAADAI-RLLRA---N-------RPDFLI---AAGTVLTA 79 (224)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEE-----TTSTTHHHHH-HHHHH---H-------CTTCEE---EEESCCSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEE-----CCCCHHHHHH-HHHHH---H-------CCCEEE---EEECCCCH
T ss_conf 7999968999999999999998799889996-----8980399999-99998---6-------899189---62020457
Q ss_pred ---------------HHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf ---------------2007699999997489048852057
Q gi|254780791|r 225 ---------------WHFNDEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 225 ---------------~~FN~e~laraI~~~~iPVisgIGH 249 (529)
.+.-+++|++.--+..+|+|-|+..
T Consensus 80 ~~~~~a~~aGA~FivSP~~~~~v~~~a~~~~i~~iPG~~T 119 (224)
T 1vhc_A 80 EQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNN 119 (224)
T ss_dssp HHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECS
T ss_pred HHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999837998972789999999998569984588588
No 308
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=38.83 E-value=14 Score=14.41 Aligned_cols=77 Identities=12% Similarity=0.209 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf 842589999998630597589997210--011110367999999997410035767775899951688844422007699
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVK--VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM 231 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~--vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529)
++-.++-++.+.+.+.-+..+.+|..+ ..+.-.+..+.+-+... ..++++.-+++.... ..
T Consensus 109 ~s~~~l~~~~~~v~~~~~~pi~~Yn~P~~~~~~~~~~~l~~l~~~~-----------~~~~~~k~~~~~~~~------~~ 171 (292)
T 2vc6_A 109 PTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDC-----------PNVKGVXDATGNLLR------PS 171 (292)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHC-----------TTEEEEEECSCCTHH------HH
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCC-----------CCEEEEECCCCCHHH------HH
T ss_conf 8999999999999830578789995588558898799999987046-----------877999848883889------99
Q ss_pred HHHHHHHCCCEEEEEE
Q ss_conf 9999974890488520
Q gi|254780791|r 232 IVRAIANSSIPIISAI 247 (529)
Q Consensus 232 laraI~~~~iPVisgI 247 (529)
..+.-...++.|++|-
T Consensus 172 ~~~~~~~~~~~v~~G~ 187 (292)
T 2vc6_A 172 LERMACGEDFNLLTGE 187 (292)
T ss_dssp HHHHHSCTTSEEEESC
T ss_pred HHHHHHCCCCEECCCC
T ss_conf 9999727782022697
No 309
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=38.74 E-value=14 Score=14.40 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=52.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
.+||-||- +...+.+++...=..+++++....+ -..|++.+.. ..||+||+-- .|
T Consensus 2 ~~rILiVD--Dd~~~~~~l~~~L~~~G~~v~~a~~----------~~~al~~l~~-------~~~dlii~D~------~m 56 (127)
T 2jba_A 2 ARRILVVE--DEAPIREMVCFVLEQNGFQPVEAED----------YDSAVNQLNE-------PWPDLILLAW------ML 56 (127)
T ss_dssp CCEEEEEC--SCHHHHHHHHHHHHHTTCEEEEECS----------HHHHHTTCSS-------SCCSEEEEES------EE
T ss_pred CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHC-------CCCCEEEECC------CC
T ss_conf 98899997--9999999999999987999999899----------9999999971-------7999999818------89
Q ss_pred HHCCHHHHHHHHHH----CCCEEEEEECCCCCCH
Q ss_conf 20076999999974----8904885205777525
Q gi|254780791|r 225 WHFNDEMIVRAIAN----SSIPIISAIGHETDWT 254 (529)
Q Consensus 225 ~~FN~e~laraI~~----~~iPVisgIGHE~D~T 254 (529)
=-.|-.++++.|-+ ..+|||---|+..+.+
T Consensus 57 p~~~G~~l~~~ir~~~~~~~~piI~ls~~~~~~~ 90 (127)
T 2jba_A 57 PGGSGIQFIKHLRRESMTRDIPVVMLTARGEEED 90 (127)
T ss_dssp TTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHH
T ss_conf 9962899999998478779990999989899999
No 310
>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A*
Probab=38.69 E-value=14 Score=14.39 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=4.8
Q ss_pred CCCCEEEEEE
Q ss_conf 4598899999
Q gi|254780791|r 81 EEGIEFLVIG 90 (529)
Q Consensus 81 ~~G~~v~~~g 90 (529)
+.|..|+..+
T Consensus 81 ~~gipvV~~~ 90 (290)
T 2fn9_A 81 EAGIPVFCVD 90 (290)
T ss_dssp HTTCCEEEES
T ss_pred HCCCEEEEEC
T ss_conf 5698399965
No 311
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=38.68 E-value=14 Score=14.39 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 31026528999847842589999998630597589997210011110367999999997410035767775899951688
Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 140 ~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
|-+..|.+|-||- +....+.++..+=+.|++++.... +-.+||+.+... .||+|++
T Consensus 5 P~~~~pl~VLiVD--D~~~~r~~l~~~L~~~g~~v~~a~----------~g~eAl~~~~~~-------~~dlii~----- 60 (140)
T 3c97_A 5 PSQIMPLSVLIAE--DNDICRLVAAKALEKCTNDITVVT----------NGLQALQAYQNR-------QFDVIIM----- 60 (140)
T ss_dssp -----CCEEEEEC--CCHHHHHHHHHHHTTTCSEEEEES----------SHHHHHHHHHHS-------CCSEEEE-----
T ss_pred CCCCCCCEEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHHC-------CCCEEEE-----
T ss_conf 9999999899993--989999999999998799999989----------999999998707-------9988999-----
Q ss_pred CHHHHH--HCCHHHHHHHHHH-------CCCEEEEEECCCCC
Q ss_conf 844422--0076999999974-------89048852057775
Q gi|254780791|r 220 SIEDLW--HFNDEMIVRAIAN-------SSIPIISAIGHETD 252 (529)
Q Consensus 220 S~eDL~--~FN~e~laraI~~-------~~iPVisgIGHE~D 252 (529)
|+. -.|-.++++.|-+ ..+|||.--|+..+
T Consensus 61 ---D~~mP~~dG~el~~~ir~~~~~~~~~~ipii~~ta~~~~ 99 (140)
T 3c97_A 61 ---DIQMPVMDGLEAVSEIRNYERTHNTKRASIIAITADTID 99 (140)
T ss_dssp ---CTTCCSSCHHHHHHHHHHHHHHHTCCCCCCEEEESSCCS
T ss_pred ---ECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCCCH
T ss_conf ---479999899999999983521037899839999899629
No 312
>1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A
Probab=38.65 E-value=14 Score=14.39 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHHHHCCCCCCCCCCEEEEE--------CCCCCHHHHHHCCHHHH----------HHHHHHCCCEEEEEECC-CCC
Q ss_conf 99741003576777589995--------16888444220076999----------99997489048852057-775
Q gi|254780791|r 196 QLNTLKEGRTCPRPDIIILA--------RGGGSIEDLWHFNDEMI----------VRAIANSSIPIISAIGH-ETD 252 (529)
Q Consensus 196 ~~~~~~~~~~~~~~D~iii~--------RGGGS~eDL~~FN~e~l----------araI~~~~iPVisgIGH-E~D 252 (529)
+|-..........||++||+ -||...+||-.-|-+.| ++.|-.+-+|||.+|-+ .+|
T Consensus 312 KF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNl~~fGvpvVVAIN~F~tD 387 (557)
T 1eg7_A 312 KFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTD 387 (557)
T ss_dssp HHHHTHHHHHTCCCCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTC
T ss_pred HHCCCCCCCCCCCCCEEEEEEECCEEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 4303335568989886689964110642589885774640799999777669999975543289748984377767
No 313
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=38.60 E-value=14 Score=14.38 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=18.1
Q ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 214567633234677766999998887789
Q gi|254780791|r 267 PTGAAEMAVPVKEHLQSSLINLEARLNNII 296 (529)
Q Consensus 267 PTaAAElavp~~~EL~~~L~~l~~RL~~a~ 296 (529)
+-++|.++.....+|...+.++..++....
T Consensus 4 ~~~~~~~l~Ek~q~Leq~l~~lk~~~qele 33 (596)
T 1bg1_A 4 NHPTAAVVTEKQQMLEQHLQDVRKRVQDLE 33 (596)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 850155899999999999999999999999
No 314
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=38.51 E-value=14 Score=14.37 Aligned_cols=91 Identities=23% Similarity=0.333 Sum_probs=56.6
Q ss_pred EEEEEECCCHHH--HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH---
Q ss_conf 899984784258--999999863059758999721001111036799999999741003576777589995168884---
Q gi|254780791|r 147 IIAVITSPTGAV--IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--- 221 (529)
Q Consensus 147 ~i~vits~~~a~--~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--- 221 (529)
.+-+|....|.. +-|+++.++..+|..|++ |+-+..+....|..+ ..|.|.++-|+||.
T Consensus 119 d~ivID~ahg~~~~~~~~ik~~r~~~~~~vi~------GNVaT~e~a~~L~~a----------GAD~VkVGiG~Gs~CtT 182 (361)
T 3khj_A 119 DVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIV------GNVVTEEATKELIEN----------GADGIKVGIGPGSICTT 182 (361)
T ss_dssp SEEEECCSCCSBHHHHHHHHHHHHHCCCEEEE------EEECSHHHHHHHHHT----------TCSEEEECSSCCTTCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE------CCCCCHHHHHHHHHC----------CCCEEEECCCCCCCCCC
T ss_conf 99999289885148999999986027988686------553888999999971----------99889973406855552
Q ss_pred --------HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf --------4422007699999997489048852057775258
Q gi|254780791|r 222 --------EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL 255 (529)
Q Consensus 222 --------eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl 255 (529)
--|.+.-+ ++.+...+.+|||+.=|.-+---|
T Consensus 183 r~~tGvg~pq~sai~~--~~~~~~~~~vpIIADGGi~~~gdi 222 (361)
T 3khj_A 183 RIVAGVGVPQITAIEK--CSSVASKFGIPIIADGGIRYSGDI 222 (361)
T ss_dssp HHHTCBCCCHHHHHHH--HHHHHHHHTCCEEEESCCCSHHHH
T ss_pred CCCCCCCCCHHHHHHH--HHHHHCCCCCCEEECCCCCCCCHH
T ss_conf 0031557836889999--999860478877955883646719
No 315
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=38.24 E-value=14 Score=14.34 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.2
Q ss_pred EEEECCCCCHHH
Q ss_conf 999516888444
Q gi|254780791|r 212 IILARGGGSIED 223 (529)
Q Consensus 212 iii~RGGGS~eD 223 (529)
+||+=|||+.-+
T Consensus 72 iVIVhGgG~~a~ 83 (270)
T 2ogx_B 72 LLIGTGAGTRAR 83 (270)
T ss_dssp EEEEECCCHHHH
T ss_pred EEEEECCCHHHH
T ss_conf 899989888999
No 316
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=38.20 E-value=12 Score=15.09 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 758999516888444220076999999974890
Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSI 241 (529)
Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~i 241 (529)
.+|=||..+|| .+--|+||.+.|-+.+.+.|-
T Consensus 46 ~~VPVl~i~~~-~~l~wpFd~~~L~~~L~~ap~ 77 (87)
T 1ttz_A 46 LRVPVLRDPMG-RELDWPFDAPRLRAWLDAAPH 77 (87)
T ss_dssp TTCSEEECTTC-CEEESCCCHHHHHHHHHTCC-
T ss_pred CCCCEEEECCE-EEECCCCCHHHHHHHHHCCHH
T ss_conf 98788998998-798585699999999961987
No 317
>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396}
Probab=38.10 E-value=14 Score=14.32 Aligned_cols=158 Identities=18% Similarity=0.195 Sum_probs=64.1
Q ss_pred EEEEEEECCCCCC-----CCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7999997352105-----86681459889999996675288437999997101680079999999999765401226100
Q gi|254780791|r 63 RIDAIIWKGTLNK-----IEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQH 137 (529)
Q Consensus 63 ~i~~~~~~~~~~~-----~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~ 137 (529)
.++++++...... +...-+.|..|+...+- ..+.+.+.++. .+....|.++. +.+.+.+...|
T Consensus 59 ~~Dgiii~~~~~~~~~~~i~~~~~~~Ipvv~~d~~--~~~~~~~~~v~--~d~~~~g~~a~--~~l~~~~~~~g------ 126 (276)
T 3ksm_A 59 PPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSD--LAGDAHQGLVA--TDNYAAGQLAA--RALLATLDLSK------ 126 (276)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC--CSSSCSSEEEE--CCHHHHHHHHH--HHHHHHSCTTS------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCEEEE--CCCHHHHHHHH--HHHHHHHHCCC------
T ss_conf 99899992798577799999999779949997255--46776521894--26188899999--99998742289------
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHH-----HHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 163102652899984784258999-----9998630597-5899972100111103679999999974100357677758
Q gi|254780791|r 138 KNPIPFIPKIIAVITSPTGAVIRD-----ILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDI 211 (529)
Q Consensus 138 k~~lP~~p~~i~vits~~~a~~~D-----~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ 211 (529)
.++|++++.+.+..... |...+. .+| +.+. +.. .+..........+..+-..+ +++|+
T Consensus 127 -------~~~i~~l~~~~~~~~~~~R~~g~~~~~~-~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~-----~~~~a 190 (276)
T 3ksm_A 127 -------ERNIALLRLRAGNASTDQREQGFLDVLR-KHDKIRII-AAP--YAGDDRGAARSEMLRLLKET-----PTIDG 190 (276)
T ss_dssp -------CEEEEECBCCTTCHHHHHHHHHHHHHHT-TCTTEEEE-ECC--BCCSSHHHHHHHHHHHHHHC-----SCCCE
T ss_pred -------CCEEEEECCCCCCCCHHHHHHHHHHHHH-HCCCCCCE-EEE--EEHHHHHHHHHHHHHHHHCC-----CCCEE
T ss_conf -------8559981477777608899999999999-77986430-355--41123478999988765128-----98504
Q ss_pred EEEECCCCCHHHHHHCCHHH---HHHHHHHCCCE-EEEEECCCCCCHHHHHHH
Q ss_conf 99951688844422007699---99999748904-885205777525898864
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEM---IVRAIANSSIP-IISAIGHETDWTLADYAA 260 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~---laraI~~~~iP-VisgIGHE~D~Tl~D~VA 260 (529)
|+ |.||.. +++++-+..++ =|+-||....-...+++.
T Consensus 191 i~------------~~~d~~a~g~~~a~~~~g~~~~i~vvg~d~~~~~~~~i~ 231 (276)
T 3ksm_A 191 LF------------TPNESTTIGALVAIRQSGMSKQFGFIGFDQTEELEAAMY 231 (276)
T ss_dssp EE------------CCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHHH
T ss_pred EE------------CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 42------------378299999999999769999818998789799999987
No 318
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=37.99 E-value=15 Score=14.31 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCCCCEEEEEECCCHHHH----HHHHHHHHHCCCEEEEEEECCCCCCC-HHHHHHHHHHH-HHHH--CCCCCCCCCCEEE
Q ss_conf 026528999847842589----99999863059758999721001111-03679999999-9741--0035767775899
Q gi|254780791|r 142 PFIPKIIAVITSPTGAVI----RDILQRISCRFPLRVIIFPVKVQGDE-CPKEIANAILQ-LNTL--KEGRTCPRPDIII 213 (529)
Q Consensus 142 P~~p~~i~vits~~~a~~----~D~~~~~~~r~p~~~~~~p~~vQG~~-a~~~i~~ai~~-~~~~--~~~~~~~~~D~ii 213 (529)
+.-|++|+||+-+..... .++.+-|.++ .+.|++-+....... +..+....+.. +... ....-...+|+||
T Consensus 35 ~~~pk~vlii~K~~d~~~~~~~~el~~~L~~~-g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI 113 (365)
T 3pfn_A 35 NKSPKSVLVIKKMRDASLLQPFKELCTHLMEE-NMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFII 113 (365)
T ss_dssp SSCCCEEEEEECTTCGGGHHHHHHHHHHHHHT-SCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEE
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEE
T ss_conf 99998899995799979999999999999878-99899861353071543345555334443315579567575668899
Q ss_pred EECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 9516888444220076999999974890488520
Q gi|254780791|r 214 LARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 214 i~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI 247 (529)
..=|-|.+- ..++.+....+||+ ||
T Consensus 114 ~lGGDGTlL--------~a~~~~~~~~~Pil-GI 138 (365)
T 3pfn_A 114 CLGGDGTLL--------YASSLFQGSVPPVM-AF 138 (365)
T ss_dssp EESSTTHHH--------HHHHHCSSSCCCEE-EE
T ss_pred EECCCHHHH--------HHHHHHCCCCCCEE-EE
T ss_conf 976819999--------99998517898289-98
No 319
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=37.66 E-value=15 Score=14.27 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=37.3
Q ss_pred CCCCCCCEEEEEECCCHHH-----HHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 3102652899984784258-----99999986305975899972100111103679999999974100357677758999
Q gi|254780791|r 140 PIPFIPKIIAVITSPTGAV-----IRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529)
Q Consensus 140 ~lP~~p~~i~vits~~~a~-----~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529)
..|+-|.||||||-.+.++ -..++..+-..+++++..+.+. ..-...+.+++..+.... .+|+||.
T Consensus 5 ~~~f~p~rvavitvsD~rg~~~D~nGp~L~~~l~~~G~~v~~~~iv---~Dd~~~~~~~l~~~~~~~------~~dlIiT 75 (172)
T 1mkz_A 5 STEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIV---KENRYAIRAQVSAWIASD------DVQVVLI 75 (172)
T ss_dssp CSSCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEE---CSCHHHHHHHHHHHHHSS------SCCEEEE
T ss_pred CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC---CCCHHHHHHHHHHHHHCC------CCCEEEE
T ss_conf 7786686899999848988676673999999999859957763105---885799999999987625------6761585
Q ss_pred ECCCCCH
Q ss_conf 5168884
Q gi|254780791|r 215 ARGGGSI 221 (529)
Q Consensus 215 ~RGGGS~ 221 (529)
=||-|.
T Consensus 76 -tGGtg~ 81 (172)
T 1mkz_A 76 -TGGTGL 81 (172)
T ss_dssp -ESCCSS
T ss_pred -CCCEEC
T ss_conf -253134
No 320
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=37.47 E-value=15 Score=14.25 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHH
Q ss_conf 8425899999986305975899972100-1111036799999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAI 194 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai 194 (529)
++-..+.++.+.+.+.-+..+++|..+. -|-.-..+++..|
T Consensus 143 ~~~~~i~~~f~~ia~~~~~PiiiYn~P~~~g~~l~~~~l~~L 184 (332)
T 2r8w_A 143 LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRL 184 (332)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 555899999999986036438998156535888799999997
No 321
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=37.29 E-value=12 Score=14.99 Aligned_cols=43 Identities=9% Similarity=0.245 Sum_probs=32.3
Q ss_pred HHHCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEEEEEEEC
Q ss_conf 7731461999848988957778929998699999110999999505
Q gi|254780791|r 456 NTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINK 501 (529)
Q Consensus 456 ~~L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~a~V~~k 501 (529)
+..+.|...+ ||++++....++.||.|++.+.+-.....|...
T Consensus 21 ~lI~~G~V~v---ng~~~k~s~~V~~Gd~i~i~~~~~~~~~~v~~i 63 (92)
T 2k6p_A 21 DMCNVGAVWL---NGSCAKASKEVKAGDTISLHYLKGIEEYTILQI 63 (92)
T ss_dssp CHHHHTCCEE---TTEECCTTCBCCTTCEEEECCSSCCEEEEECCC
T ss_pred HHHHCCCEEE---CCEEEEECCEECCCCEEEEEECCCCEEEEEEEC
T ss_conf 9998892897---999975236827999999983897079999978
No 322
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex; HET: FAD GHP 3MY 3FG OMY D3P BMA NAG BDP T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=37.29 E-value=15 Score=14.23 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 2299999999999740017189999
Q gi|254780791|r 15 YSVSELSYHLKHIVESNLSHVCVRG 39 (529)
Q Consensus 15 ~svs~l~~~i~~~l~~~~~~~~v~g 39 (529)
=|+.|+...|+-.-+..++ |.++|
T Consensus 65 ~s~~dV~~~v~~A~~~~~~-v~~rg 88 (523)
T 2wdx_A 65 GSTQQVADAVEETVRTGKR-VAVRS 88 (523)
T ss_dssp SSHHHHHHHHHHHHHHTCC-EEEES
T ss_pred CCHHHHHHHHHHHHHCCCC-EEEEC
T ss_conf 9999999999999987982-99989
No 323
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=37.14 E-value=15 Score=14.21 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE-EEEEEECC--CCCCCHHHHHHHHH
Q ss_conf 9999999976540122610016310265289998478425899999986305975-89997210--01111036799999
Q gi|254780791|r 118 TALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPL-RVIIFPVK--VQGDECPKEIANAI 194 (529)
Q Consensus 118 ~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~-~~~~~p~~--vQG~~a~~~i~~ai 194 (529)
+-+.+..+-...+.+|+.+.| -=|||=.+++|.|+-+++..++.+++. .+.+.++- .+ +++..+.--+-
T Consensus 6 ~~~~~~~~~~~~~~l~~~~~k-------vlva~SGG~DS~~Ll~~l~~l~~~~~~~~i~~~hv~h~~r-~~s~~~~~~v~ 77 (317)
T 1wy5_A 6 RVIRKVLALQNDEKIFSGERR-------VLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-ESAERDEEFCK 77 (317)
T ss_dssp HHHHHHHHHHHHHCSCSSCCE-------EEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCE-------EEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCHHHHHHHHH
T ss_conf 999999999999846799785-------9999818299999999999999877998099999618999-75599999999
Q ss_pred HHHHHHCCCCCCCCCCEEEE--------ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHH
Q ss_conf 99974100357677758999--------51688844422007699999997489048852057775258
Q gi|254780791|r 195 LQLNTLKEGRTCPRPDIIIL--------ARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTL 255 (529)
Q Consensus 195 ~~~~~~~~~~~~~~~D~iii--------~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl 255 (529)
+.+..++ +.+.++ ..++++.|..+-..-+.....++..--=-..+.||.-|-.+
T Consensus 78 ~~~~~~~-------i~~~~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~~~~~~~~~i~~gHh~dD~~ 139 (317)
T 1wy5_A 78 EFAKERN-------MKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLL 139 (317)
T ss_dssp HHHHHHT-------CCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHH
T ss_pred HHHHHCC-------CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHH
T ss_conf 9999606-------2422110234431147998878999999998855323431266467613012288
No 324
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=36.69 E-value=13 Score=14.77 Aligned_cols=60 Identities=23% Similarity=0.221 Sum_probs=35.1
Q ss_pred EEEECCCH--HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 99847842--589999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 149 AVITSPTG--AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 149 ~vits~~~--a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
-||-+..| ...-++++.++..||..+ ..+=|+-+..+-+..|..+ ..|.|-++-|+||+=
T Consensus 258 lvID~AhG~s~~~~~~i~~ik~~~~~~~----~viaGNv~T~~~a~~L~~~----------gad~ikVGiG~GsiC 319 (503)
T 1me8_A 258 LCIDSSDGFSEWQKITIGWIREKYGDKV----KVGAGNIVDGEGFRYLADA----------GADFIKIGIGGGSIC 319 (503)
T ss_dssp EEECCSCCCSHHHHHHHHHHHHHHGGGS----CEEEEEECSHHHHHHHHHH----------TCSEEEECSSCSTTC
T ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCCE----EEECCCCCCHHHHHHHHHH----------CCCEEEEECCCCCCC
T ss_conf 9961023456889999999997578860----4735854588999999981----------878688611378666
No 325
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.63 E-value=15 Score=14.15 Aligned_cols=36 Identities=6% Similarity=0.076 Sum_probs=17.4
Q ss_pred CCCEEEEECCCCC------EEC--CHHHCCCCCEEEEEEECEEE
Q ss_conf 1461999848988------957--77892999869999911099
Q gi|254780791|r 459 KRGYTSIQDTNNN------FIT--QKRNLATKTRILINFFDGQA 494 (529)
Q Consensus 459 ~RGYaiv~~~~Gk------iI~--s~~~l~~gd~i~i~l~DG~v 494 (529)
.+|-+++.=.+|. .|. ....+..++.|...=.=|.+
T Consensus 188 ~~~~av~~v~~~~C~gC~~~l~~~~~~~~~~~~~i~~C~~CgRi 231 (256)
T 3na7_A 188 AKNTSIVTIKKQACGGCFIRLNDKIYTEVLTSGDMITCPYCGRI 231 (256)
T ss_dssp HGGGSEEECBTTBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCE
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCE
T ss_conf 79974897359916887824389999998859990489899977
No 326
>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A
Probab=36.62 E-value=14 Score=14.37 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=59.9
Q ss_pred CCCCCEEEEEECC--CHHHHHHHHHHHHHCCC-EEEE----EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 0265289998478--42589999998630597-5899----972100111103679999999974100357677758999
Q gi|254780791|r 142 PFIPKIIAVITSP--TGAVIRDILQRISCRFP-LRVI----IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529)
Q Consensus 142 P~~p~~i~vits~--~~a~~~D~~~~~~~r~p-~~~~----~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529)
+..+++++|++=. +-.-+.+|+..|+.+|| .... +..++-+-..|..++ . ..+|++|+
T Consensus 165 ~~~~~kv~vvsQTT~~~~~~~~i~~~lk~~~~~~~~~~~nTIC~AT~~RQ~a~~~L-------a--------~~vD~miV 229 (326)
T 3ke8_A 165 VKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRAL-------A--------EQAEVVLV 229 (326)
T ss_dssp CSCTTSEEEEECTTCCHHHHHHHHHHHHHHCTTCBCCSSCSCCHHHHHHHHHHHHH-------H--------TTCSEEEE
T ss_pred CCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------H--------HHCCEEEE
T ss_conf 79854168898656129999999999998571024787677674367269999999-------9--------76779999
Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHHHC-------CCCCCCHHH
Q ss_conf 5168884442200769999999748904-8852057775258988641-------237772145
Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIANSSIP-IISAIGHETDWTLADYAAD-------LRAPTPTGA 270 (529)
Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~~~iP-VisgIGHE~D~Tl~D~VAD-------~Ra~TPTaA 270 (529)
+=|=.|- |.-.|+.-.-....| .+--=..|.|. ..| .+ --|+||..-
T Consensus 230 VGg~nSS------NT~~L~eia~~~~~~t~~Ie~~~el~~--~~l-~~~~~VGITAGASTP~~l 284 (326)
T 3ke8_A 230 VGSKNSS------NSNRLAELAQRMGKRAFLIDDAKDIQE--EWV-KEVKCVGVTAGASAPDIL 284 (326)
T ss_dssp ECCTTCH------HHHHHHHHHHHTTCEEEEESSGGGCCH--HHH-TTCSEEEEEECTTCCHHH
T ss_pred ECCCCCC------CHHHHHHHHHHHCCCEEEECCHHHCCH--HHH-CCCCEEEEECCCCCHHHH
T ss_conf 8888996------488999999976997899487165999--896-798989997312681999
No 327
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=36.40 E-value=15 Score=14.12 Aligned_cols=83 Identities=7% Similarity=0.079 Sum_probs=47.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
+||-||- +-...+.++...-+++++++.... +-.+|++.+... .||+|++--. |=
T Consensus 4 ~~vLiVD--D~~~~~~~l~~~L~~~G~~v~~a~----------~g~eAl~~l~~~-------~~dlillD~~------mP 58 (127)
T 3i42_A 4 QQALIVE--DYQAAAETFKELLEMLGFQADYVM----------SGTDALHAMSTR-------GYDAVFIDLN------LP 58 (127)
T ss_dssp EEEEEEC--SCHHHHHHHHHHHHHTTEEEEEES----------SHHHHHHHHHHS-------CCSEEEEESB------CS
T ss_pred CEEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEECCC------CC
T ss_conf 8899995--789999999999998799999989----------999999999808-------9999986278------99
Q ss_pred HCCHHHHHHHHHH----CCCEEEEEECCCCCC
Q ss_conf 0076999999974----890488520577752
Q gi|254780791|r 226 HFNDEMIVRAIAN----SSIPIISAIGHETDW 253 (529)
Q Consensus 226 ~FN~e~laraI~~----~~iPVisgIGHE~D~ 253 (529)
-.|-.++++.|-+ ..+|||.=-|+..+.
T Consensus 59 ~~~G~el~~~lr~~~~~~~~pii~lt~~~~~~ 90 (127)
T 3i42_A 59 DTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp SSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEEEECCCCHH
T ss_conf 98459999999847678999499997888799
No 328
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=36.22 E-value=13 Score=14.61 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 77758999516888444220076999999974
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIAN 238 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~ 238 (529)
.+||+.|.++|||-..---+ =--.+|||+..
T Consensus 126 ~kyDI~v~V~GGG~sGQA~A-IRlaIARAL~~ 156 (197)
T 3bbn_I 126 TNYDVFVKAHGGGLSGQAQA-ISLGVARALLK 156 (197)
T ss_dssp TTEEEEEEEESSCHHHHHHH-HHHHHHHHTTT
T ss_pred CCEEEEEEEECCCHHHHHHH-HHHHHHHHHHH
T ss_conf 74248999968975768999-99999999999
No 329
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti MAFF303099} SCOP: c.1.12.9
Probab=36.02 E-value=9.6 Score=15.93 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 8888889862299999999999740017189999970
Q gi|254780791|r 6 QKNSLDHPEYSVSELSYHLKHIVESNLSHVCVRGEIS 42 (529)
Q Consensus 6 ~~~~~~~~~~svs~l~~~i~~~l~~~~~~~~v~gEis 42 (529)
+..-|..| |=.++..+++..|+.. ..+..-|--+
T Consensus 4 ~~~~m~r~--~R~~~~~rLr~~i~~~-~~ii~~Ga~~ 37 (286)
T 2p10_A 4 TDTCIKRP--TRSELVDRFQKKIRAG-EPIIGGGAGT 37 (286)
T ss_dssp -----CCC--CHHHHHHHHHHHHHTT-CCEEEEEESS
T ss_pred CCCCCCCC--CHHHHHHHHHHHHHCC-CCEEEECHHH
T ss_conf 42035646--8999999999998379-9789824167
No 330
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* 2wks_A* 2xb9_A*
Probab=35.95 E-value=15 Score=14.06 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=58.3
Q ss_pred CEEEEEECCCHH-------------HHHHHHHHHHH----C-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 289998478425-------------89999998630----5-97589997210011110367999999997410035767
Q gi|254780791|r 146 KIIAVITSPTGA-------------VIRDILQRISC----R-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCP 207 (529)
Q Consensus 146 ~~i~vits~~~a-------------~~~D~~~~~~~----r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~ 207 (529)
-+|-||-.|+=- -+.|+.+.+.. + +.+++..|-+=..| +|+..|..... .
T Consensus 10 MkILIinGPNLNlLG~Rep~iYG~~TL~~i~~~l~~~~~~~~~~v~l~~~QSN~Eg-----elId~Iq~a~~-------~ 77 (176)
T 2c4w_A 10 MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEG-----EIIDKIQESVG-------S 77 (176)
T ss_dssp EEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHH-----HHHHHHHHHHS-------S
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHH-----HHHHHHHHHHC-------C
T ss_conf 77999848881215887887487369999999999999862898259996316099-----99999999627-------8
Q ss_pred CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 77589995168884442200769999999748904885
Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.+|.|||-=|| |..-...+..|+..+++|+|-
T Consensus 78 ~~dgiIiNPga------~ThtS~al~DAL~~~~~P~IE 109 (176)
T 2c4w_A 78 EYEGIIINPGA------FSHTSIAIADAIMLAGKPVIE 109 (176)
T ss_dssp SCCEEEEECGG------GGGTCHHHHHHHHTSSSCEEE
T ss_pred CCCEEEECCCC------CEEHHHHHHHHHHHCCCCEEE
T ss_conf 93289975763------133006799999825998899
No 331
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=35.83 E-value=14 Score=14.48 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC
Q ss_conf 777589995168884442200769999999748
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANS 239 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~ 239 (529)
..+|+.|-++|||-..---+ =--.+|||+..+
T Consensus 57 ~k~DI~i~V~GGG~sgQa~A-ir~aiaRaL~~~ 88 (128)
T 2vqe_I 57 GRFDAYITVRGGGKSGQIDA-IKLGIARALVQY 88 (128)
T ss_dssp TTEEEEEEEESSCHHHHHHH-HHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCHHHHHHH-HHHHHHHHHHHH
T ss_conf 55259999978866389999-999999999997
No 332
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=35.83 E-value=16 Score=14.05 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH
Q ss_conf 8425899999986305975899972100-111103679999999974100357677758999516888444220076999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI 232 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l 232 (529)
++-.++-++.+.+.+.-++.+++|..+. -|-.-..+.+..|... +.++-+-=..| |.+.+
T Consensus 110 ~~~~~l~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~~~~l~~~-----------~ni~g~K~s~~--------~~~~~ 170 (292)
T 2ojp_A 110 PSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKV-----------KNIIGIXEATG--------NLTRV 170 (292)
T ss_dssp CCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHTS-----------TTEEEC-CCSC--------CTHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCC-----------CCEEEEECCCC--------CHHHH
T ss_conf 899999999999861079978999668645777788999998379-----------99999956788--------66789
Q ss_pred HHHHHHC--CCEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf 9999748--9048852057775258988641237772
Q gi|254780791|r 233 VRAIANS--SIPIISAIGHETDWTLADYAADLRAPTP 267 (529)
Q Consensus 233 araI~~~--~iPVisgIGHE~D~Tl~D~VAD~Ra~TP 267 (529)
.+.+..+ ...|++| ++.- .+..+.+....-.+
T Consensus 171 ~~~~~~~~~~~~~~~G--~~~~-~~~~~~~Ga~G~~~ 204 (292)
T 2ojp_A 171 NQIKELVSDDFVLLSG--DDAS-ALDFMQYGGHGVIS 204 (292)
T ss_dssp HHHHTTSCTTSBCEES--CGGG-HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCCEEEEC--CHHH-HHHHHHCCCEEEEE
T ss_conf 9999977998189853--5786-54787579659983
No 333
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=35.49 E-value=16 Score=14.01 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=20.2
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHHHC
Q ss_conf 777589995168884442200769999999748904-8852057775258988641
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIP-IISAIGHETDWTLADYAAD 261 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iP-VisgIGHE~D~Tl~D~VAD 261 (529)
+.+|+|+-+= |.++ ...++|+-+...| -|.-||...+-..++++.+
T Consensus 181 ~~i~~i~~~~------d~~a---~ga~~Al~~~g~~~~i~i~g~d~~~~~~~~i~~ 227 (313)
T 2h3h_A 181 PDLDAFFGVY------AYNG---PAQALVVKNAGKVGKVKIVCFDTTPDILQYVKE 227 (313)
T ss_dssp TTCCEEEECS------TTHH---HHHHHHHHHTTCTTTSEEEEECCCHHHHHHHHH
T ss_pred CCCCEEEECC------CHHH---HHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHC
T ss_conf 8984899778------4689---999999997799989747995798999999986
No 334
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=35.41 E-value=16 Score=14.00 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=28.2
Q ss_pred CCEEEEEEECCCCCC-CCCCEEEEEEE--C--CCCEEEEEEECCCC-CCCCCCCC-CCCEEEEEEEE
Q ss_conf 718999997054356-88862799987--4--89479999973521-05866814-59889999996
Q gi|254780791|r 33 SHVCVRGEISGYRGI-HSSGHAYFSLK--D--NHSRIDAIIWKGTL-NKIEFLPE-EGIEFLVIGKI 92 (529)
Q Consensus 33 ~~~~v~gEis~~~~~-~~sGH~Yf~lk--d--~~a~i~~~~~~~~~-~~~~~~~~-~G~~v~~~g~~ 92 (529)
+.+-+.|-+|+++.. -+.|-++++++ . +.+.+.-.||.+.+ ..+...|- ++.-+-..|.+
T Consensus 98 gGltf~g~~s~y~~~~dKKG~v~I~f~v~g~~~s~~v~Itl~~~gN~asV~V~pnfnr~~It~sG~L 164 (176)
T 3fyf_A 98 GGVTVQGNVNGISMRQDKDGNVYYNYGINGIAVSATVSIVLTGGTNQASVTINPNFSGNTLTMNGYL 164 (176)
T ss_dssp -CCEEEEEEEEEEEEECTTCCEEEEEEEECSSCEEEEEEEECTTSSEEEEEEEETTCCCCEEEEEEE
T ss_pred CCEEEECCCCCEEEEECCCCCEEEEEEECCCEEEEEEEEEEECCCCEEEEEECCCCCCCCEEEEEEE
T ss_conf 7879803322208997568849999995462488999999937995479997647788816786678
No 335
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=35.27 E-value=13 Score=14.62 Aligned_cols=32 Identities=22% Similarity=0.491 Sum_probs=20.7
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC
Q ss_conf 777589995168884442200769999999748
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANS 239 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~ 239 (529)
..||+.|-++|||-..--.+. --.++||+.++
T Consensus 64 ~~~Di~~~V~GGG~sgQA~Ai-RlaIARAL~~~ 95 (146)
T 2zkq_i 64 AGVDIRVRVKGGGHVAQIYAI-RQSISKALVAY 95 (146)
T ss_dssp SSEEEEEEEESSCHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCEEEEEECCCHHHHHHHH-HHHHHHHHHHH
T ss_conf 565459999578600887199-99999999986
No 336
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=35.23 E-value=16 Score=13.97 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=48.1
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 77758999516888444220076999999974890488520577752589886412377721456763323467776699
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLI 286 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~ 286 (529)
..+|+|||+ .+..|...++.-....||||+=+--..|-+.+||+ +|..++-...|.
T Consensus 117 ~~P~lliv~---------dp~~d~~av~Ea~~~~IPviai~DTn~~p~~vd~~---------------IP~Ndds~~Si~ 172 (295)
T 2zkq_b 117 REPRLLVVT---------DPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA---------------IPCNNKGAHSVG 172 (295)
T ss_dssp CCCSEEEES---------CTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEE---------------EESCSSCHHHHH
T ss_pred CCCCEEEEE---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE---------------EECCCCHHHHHH
T ss_conf 578704776---------66643488999987499989981589996412357---------------747883587999
Q ss_pred HHHHHHHHHH
Q ss_conf 9998887789
Q gi|254780791|r 287 NLEARLNNII 296 (529)
Q Consensus 287 ~l~~RL~~a~ 296 (529)
-+..-|.+++
T Consensus 173 l~~~~la~~v 182 (295)
T 2zkq_b 173 LMWWMLAREV 182 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 337
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A
Probab=35.10 E-value=3.6 Score=19.76 Aligned_cols=43 Identities=7% Similarity=-0.052 Sum_probs=33.5
Q ss_pred HCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECEEEE--EEEEECC
Q ss_conf 31461999848988957778929998699999110999--9995057
Q gi|254780791|r 458 LKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQAN--AIVINKA 502 (529)
Q Consensus 458 L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG~v~--a~V~~k~ 502 (529)
+.-|| +.+.+|.++++..-+...+.|.++|.||+.. ++|.+..
T Consensus 102 ~Gsg~--ii~~~G~i~Tn~HVv~~a~~i~v~~~dg~~~~~a~vvg~d 146 (264)
T 1kxf_A 102 KRQRM--ALKLEADRLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTI 146 (264)
T ss_dssp ----C--CCCCCCSCEEEEECTTCCEEEEEEEETTEEEEETTCCSEE
T ss_pred CCCCE--EECCCCEEECCCCEECCCCEEEEEECCCCEEEEEEEEECC
T ss_conf 77621--6616764876650426786699996699788623898058
No 338
>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583}
Probab=34.91 E-value=16 Score=13.94 Aligned_cols=191 Identities=15% Similarity=0.190 Sum_probs=86.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC---CCCCCCCCCC
Q ss_conf 8888986229999999999974001718999997054356888627999874894799999735210---5866814598
Q gi|254780791|r 8 NSLDHPEYSVSELSYHLKHIVESNLSHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLN---KIEFLPEEGI 84 (529)
Q Consensus 8 ~~~~~~~~svs~l~~~i~~~l~~~~~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~---~~~~~~~~G~ 84 (529)
|+.+.|. .+++...|...+.. .++-.+.. +-.. .+-+ |.+ ..+++++.-+... .+..--+.|.
T Consensus 16 p~~~~~~--~~~l~~gi~~~~~~-~g~~~~~~---~~~~----~~~~--l~~--~~vdgiIl~~~~~~~~~~~~l~~~~i 81 (277)
T 3cs3_A 16 ADYGGSF--YGELLEGIKKGLAL-FDYEMIVC---SGKK----SHLF--IPE--KMVDGAIILDWTFPTKEIEKFAERGH 81 (277)
T ss_dssp CSSCTTT--HHHHHHHHHHHHHT-TTCEEEEE---ESTT----TTTC--CCT--TTCSEEEEECTTSCHHHHHHHHHTTC
T ss_pred CCCCCHH--HHHHHHHHHHHHHH-CCCEEEEE---ECHH----HHHH--HHH--CCCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 8898889--99999999999998-69989998---0858----7999--996--69998999727799799999997499
Q ss_pred EEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHH-HHHH--
Q ss_conf 8999999667528843799999710168007999999999976540122610016310265289998478425-8999--
Q gi|254780791|r 85 EFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGA-VIRD-- 161 (529)
Q Consensus 85 ~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a-~~~D-- 161 (529)
-|++.++. .+..++..+.. |. ...-+..-+.|.+.|. ++|++|+++... ...+
T Consensus 82 PvV~~~~~---~~~~~~~~V~~--D~------~~~~~~~~~~l~~~G~-------------~~i~~i~~~~~~~~~~~R~ 137 (277)
T 3cs3_A 82 SIVVLDRT---TEHRNIRQVLL--DN------RGGATQAIEQFVNVGS-------------KKVLLLSGPEKGYDSQERL 137 (277)
T ss_dssp EEEESSSC---CCSTTEEEEEE--CH------HHHHHHHHHHHHHTTC-------------SCEEEEECCTTSHHHHHHH
T ss_pred CEEEECCC---CCCCCCCEEEE--CC------HHHHHHHHHHHHHCCC-------------CEEEEECCCCCCCHHHHHH
T ss_conf 89998775---57899988997--75------8999999999997398-------------1488851787652288887
Q ss_pred --HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH---HHHHH
Q ss_conf --9998630597589997210011110367999999997410035767775899951688844422007699---99999
Q gi|254780791|r 162 --ILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM---IVRAI 236 (529)
Q Consensus 162 --~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~---laraI 236 (529)
|...+.+. +++..+ ++|.....+-..+...+... ...++|+| +|.||.. +.+++
T Consensus 138 ~gf~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~ai------------~~~~d~~A~gv~~~l 196 (277)
T 3cs3_A 138 AVSTRELTRF-GIPYEI----IQGDFTEPSGYAAAKKILSQ----PQTEPVDV------------FAFNDEMAIGVYKYV 196 (277)
T ss_dssp HHHHHHHHHT-TCCEEE----EECCSSHHHHHHHHHHHTTS----CCCSSEEE------------EESSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCCEE----ECCCCCCCHHHHHHHHHHHC----CCCCCEEE------------EECCHHHHHCHHHHH
T ss_conf 8899999983-997202----10222200489999998633----67887078------------717878863558999
Q ss_pred HHCCCEE-----EEEECCCCCCHHHHHHH
Q ss_conf 7489048-----85205777525898864
Q gi|254780791|r 237 ANSSIPI-----ISAIGHETDWTLADYAA 260 (529)
Q Consensus 237 ~~~~iPV-----isgIGHE~D~Tl~D~VA 260 (529)
.++.+-| |.|++ |..+++++.
T Consensus 197 ~~~g~~vP~dv~vig~d---~~~~~~~~~ 222 (277)
T 3cs3_A 197 AETNYQMGKDIRIIGFD---NSELGAFVQ 222 (277)
T ss_dssp TTSSCCBTTTEEEECSS---CCHHHHHSS
T ss_pred HHCCCCCCCCEEEEEEC---CHHHHHHCC
T ss_conf 97499889843899988---889997308
No 339
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A*
Probab=34.72 E-value=16 Score=13.91 Aligned_cols=101 Identities=18% Similarity=0.165 Sum_probs=45.3
Q ss_pred CCCCCEEEEEEC-----CCHHHHHHHHHHH-HHCCCEEEEEEECCCCCCC------------------HHHHHHHHHHHH
Q ss_conf 026528999847-----8425899999986-3059758999721001111------------------036799999999
Q gi|254780791|r 142 PFIPKIIAVITS-----PTGAVIRDILQRI-SCRFPLRVIIFPVKVQGDE------------------CPKEIANAILQL 197 (529)
Q Consensus 142 P~~p~~i~vits-----~~~a~~~D~~~~~-~~r~p~~~~~~p~~vQG~~------------------a~~~i~~ai~~~ 197 (529)
|.-+.|||.|+| +.|--+.+++..+ +++|-+.++.|...-..+. ...++++.|.
T Consensus 202 ~~~klrIGyvS~df~~H~v~~~~~~~~~~~d~~~fe~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~I~-- 279 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIR-- 279 (568)
T ss_dssp SSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTSEEEECTTCCHHHHHHHHH--
T ss_pred CCCCEEEEEEHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHH--
T ss_conf 778769999846505064888866665400123433245633688765069999986268488767899899999998--
Q ss_pred HHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCE-EEEEECC-------CCCCHHHHHHHC
Q ss_conf 741003576777589995168884442200769999999748904-8852057-------775258988641
Q gi|254780791|r 198 NTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIP-IISAIGH-------ETDWTLADYAAD 261 (529)
Q Consensus 198 ~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iP-VisgIGH-------E~D~Tl~D~VAD 261 (529)
. .++|++|=.-|+.+-.-+.. -+.=+=| -|+..|| ..|+-|+|-+.+
T Consensus 280 -~-------d~iDILvdl~g~t~~~r~~i---------~~~R~APvQv~~~G~p~TtG~~~iDy~i~d~~~~ 334 (568)
T 2vsy_A 280 -H-------HGIDLLFDLRGWGGGGRPEV---------FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFAL 334 (568)
T ss_dssp -H-------TTCSEEEECSSCTTCSSCHH---------HHTCCSSEEEEESSSSSCCCCTTCCEEEECTTTS
T ss_pred -H-------CCCCEEEECCCCCCCCCHHH---------HHCCCCCEEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf -7-------18858995376678873056---------6528887688850677677877768698566657
No 340
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=34.71 E-value=16 Score=13.91 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCC--EEEEEEE-CC------CCCCC----HHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 6528999847842589999998630597--5899972-10------01111----0367999999997410035767775
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFP--LRVIIFP-VK------VQGDE----CPKEIANAILQLNTLKEGRTCPRPD 210 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p--~~~~~~p-~~------vQG~~----a~~~i~~ai~~~~~~~~~~~~~~~D 210 (529)
..++|-||++|+|+|-.-+++.|.+++| +...+.. +. +.|.+ ...+. ..+... -.
T Consensus 3 ~m~k~ivi~GpSG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~R~~E~~g~dy~Fvs~~~F-------~~~~~~-----g~ 70 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQM-------MQDISN-----NE 70 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHH-------HHHHHT-----TC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHH-------HHHHHC-----CC
T ss_conf 887669999999899899999999729767663140357899986678851589628999-------998763-----77
Q ss_pred EEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 89995168884442200769999999748904885
Q gi|254780791|r 211 IIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 211 ~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.+--..=.| ..+.---+.+-+.+.+-.++|+.
T Consensus 71 fie~~~~~g---~~YGt~~~~i~~~~~~g~~~il~ 102 (180)
T 1kgd_A 71 YLEYGSHED---AMYGTKLETIRKIHEQGLIAILD 102 (180)
T ss_dssp EEEEEEETT---EEEEEEHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEECC---CCEEEEEECCCCCCCCCCEEEEE
T ss_conf 466554236---52023321012100358758980
No 341
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=34.68 E-value=16 Score=13.99 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=8.0
Q ss_pred CCCCCEEEEEEEE
Q ss_conf 1459889999996
Q gi|254780791|r 80 PEEGIEFLVIGKI 92 (529)
Q Consensus 80 ~~~G~~v~~~g~~ 92 (529)
++.|+.|++.|..
T Consensus 158 ~~~g~~v~aig~p 170 (448)
T 1ky9_A 158 LRVGDYTVAIGNP 170 (448)
T ss_dssp CCTTCEEEEEECT
T ss_pred CCCCCEEEEEECC
T ss_conf 4568779998536
No 342
>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1
Probab=34.67 E-value=16 Score=13.91 Aligned_cols=84 Identities=10% Similarity=0.140 Sum_probs=50.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 26528999847842589999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 143 FIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 143 ~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
.-|.||-||-- -..+..++...-+.+++++..+... ..|++.+.... .||+||+--+
T Consensus 13 m~~~rILvVDD--d~~~~~~l~~~L~~~G~~v~~~~~g----------~~al~~l~~~~------~~DlvilD~~----- 69 (138)
T 2b4a_A 13 MQPFRVTLVED--EPSHATLIQYHLNQLGAEVTVHPSG----------SAFFQHRSQLS------TCDLLIVSDQ----- 69 (138)
T ss_dssp -CCCEEEEECS--CHHHHHHHHHHHHHTTCEEEEESSH----------HHHHHTGGGGG------SCSEEEEETT-----
T ss_pred CCCCEEEEEEC--CHHHHHHHHHHHHHCCCEEEEECCH----------HHHHHHHHHCC------CCCEEEEECC-----
T ss_conf 67888999969--9999999999999859979980999----------99999998369------9988998588-----
Q ss_pred HHHHCCHHHHHHHHHHC--CCEEEEEECCC
Q ss_conf 42200769999999748--90488520577
Q gi|254780791|r 223 DLWHFNDEMIVRAIANS--SIPIISAIGHE 250 (529)
Q Consensus 223 DL~~FN~e~laraI~~~--~iPVisgIGHE 250 (529)
|=..|-.++++.|-+. .+|||-=-|+.
T Consensus 70 -lP~~dG~~l~~~ir~~~~~~piI~lt~~~ 98 (138)
T 2b4a_A 70 -LVDLSIFSLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp -CTTSCHHHHHHHHTTSSSCCEEEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf -89988899999999709999689998981
No 343
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=34.50 E-value=16 Score=13.89 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 79999999999765401226100163102652899984784258999999863059758999721001111036799999
Q gi|254780791|r 115 TLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAI 194 (529)
Q Consensus 115 ~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai 194 (529)
||.+-.+.|+.-+. |-.. + -+++|-+|.....+ ++.+...+.+.+... +. -.--|- .+.+.+
T Consensus 48 dL~kT~~~L~~A~~----fl~~----~--~~~~ILfVgtk~~~--~~~v~~~A~~~g~~y-v~-~rWlgG----~LTN~~ 109 (208)
T 1vi6_A 48 DIRKLDERIRVAAK----FLSR----Y--EPSKILLVAARQYA--HKPVQMFSKVVGSDY-IV-GRFIPG----TLTNPM 109 (208)
T ss_dssp CHHHHHHHHHHHHH----HHTT----S--CGGGEEEEECSGGG--HHHHHHHHHHHCCEE-EE-SSCCTT----TTTCTT
T ss_pred EHHHHHHHHHHHHH----HHHH----C--CCCCEEEEECCHHH--HHHHHHHHHHCCCCC-CC-CCCCCC----CCCCHH
T ss_conf 79999999999999----9985----5--67727998345889--999999998646875-44-645677----544667
Q ss_pred HHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99974100357677758999516888444220076999999974890488520577752589886412377721456763
Q gi|254780791|r 195 LQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529)
Q Consensus 195 ~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529)
. .....||+|||. .+-.|...++.-..+.||||+=+---.|.+.+||+
T Consensus 110 ~--------~~~~~P~~viv~---------dp~~d~~ai~Ea~~l~IP~I~ivDTn~~p~~vdyp--------------- 157 (208)
T 1vi6_A 110 L--------SEYREPEVVFVN---------DPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLV--------------- 157 (208)
T ss_dssp S--------TTCCCCSEEEES---------CTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE---------------
T ss_pred H--------HHCCCCCCCEEE---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE---------------
T ss_conf 7--------741467660777---------67753799999998099658872499981118878---------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3234677766999998887789
Q gi|254780791|r 275 VPVKEHLQSSLINLEARLNNII 296 (529)
Q Consensus 275 vp~~~EL~~~L~~l~~RL~~a~ 296 (529)
+|...+-...+.-...-|.+++
T Consensus 158 IP~Ndds~~Si~li~~lL~~ai 179 (208)
T 1vi6_A 158 IPTNNKGRRALAIVYWLLAREI 179 (208)
T ss_dssp EESCCSCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHH
T ss_conf 8688863879999999999999
No 344
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A*
Probab=34.47 E-value=16 Score=13.88 Aligned_cols=84 Identities=11% Similarity=0.010 Sum_probs=40.9
Q ss_pred CEEEEEECCCHH-HHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 289998478425-8999999863---059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITSPTGA-VIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits~~~a-~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
++||+|....+- -+.-+..-+. +.+.+++.++.. ++.-+..-+++|+.+-.. ++|.||+.=.-..
T Consensus 4 ~~I~~i~~~~~n~f~~~~~~G~~~~a~~~g~~v~~~~~---~~~d~~~q~~~i~~~i~~-------~vDgiii~~~~~~- 72 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGP---TEPSVSGQVQLVNNFVNQ-------GYDAIIVSAVSPD- 72 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCC---SSCCHHHHHHHHHHHHHT-------TCSEEEECCSSSS-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC---CCCCHHHHHHHHHHHHHC-------CCCEEEECCCHHH-
T ss_conf 78999958899989999999999999982998999979---999999999999999976-------9998998252011-
Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf 4422007699999997489048852
Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisg 246 (529)
..+...+...+..||||+-
T Consensus 73 ------~~~~~~~~~~~~gipvv~~ 91 (316)
T 1tjy_A 73 ------GLCPALKRAMQRGVKILTW 91 (316)
T ss_dssp ------TTHHHHHHHHHTTCEEEEE
T ss_pred ------HHHHHHHHHHHCCCCEEEE
T ss_conf ------1258999998649956850
No 345
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=34.44 E-value=16 Score=13.88 Aligned_cols=118 Identities=10% Similarity=-0.012 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 07999999999976540122610016310265289998478425899999986305975899972100111103679999
Q gi|254780791|r 114 GTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANA 193 (529)
Q Consensus 114 G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~a 193 (529)
|++....+.+.+.|.-.| +=.|.-.-|-++.+.+....-..+..--+-+..-+....+|.-+ ....+.++.++|
T Consensus 107 ~~l~~ai~~~~~~l~i~g-----~VlP~t~~~v~l~a~~~dG~~~~ge~~i~~~~~~~~~~~~~~~~-~~~~~~p~~~~a 180 (311)
T 3c3d_A 107 ASLTDSTVKLSSLFGIKA-----NILPMSDDPVSTYIETAEGIMHFQDFWIGKRGEPDVRGVDIRGV-SEASISPKVLEA 180 (311)
T ss_dssp CCHHHHHHHHHHHHTCCS-----EEEESCSSCCEEEEEESSCEEEHHHHHTTSTTCSCEEEEEEETT-TTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCC-----EEECCCCCCEEEEEEECCCCEEECCEEEECCCCCCEEEEECCCC-CCCCCCHHHHHH
T ss_conf 999999999999858996-----38533278637999978998775427753167885588732577-776579999999
Q ss_pred HHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE-EECC
Q ss_conf 9999741003576777589995168884442200769999999748904885-2057
Q gi|254780791|r 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS-AIGH 249 (529)
Q Consensus 194 i~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis-gIGH 249 (529)
|+. .|+||++=|-==..=+-.+-=..+..||.+++.|.|+ =+|.
T Consensus 181 I~~------------AD~Iv~gPGs~ytSI~P~Llv~gi~~AI~~~~~~~V~pi~~~ 225 (311)
T 3c3d_A 181 FEK------------EENILIGPSNPITSIGPIISLPGMRELLKKKKVVAVSPIIGN 225 (311)
T ss_dssp HHH------------CCEEEECSSCTTTTSHHHHHSTTHHHHHHTSEEEEECCEETT
T ss_pred HHH------------CCCEEECCCCCHHHHCCCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 984------------884898389626650640124679999985896599703079
No 346
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=34.08 E-value=16 Score=13.83 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=76.0
Q ss_pred CCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH----HHCC-
Q ss_conf 28843799999710168007999999999976540122610016310265289998478425899999986----3059-
Q gi|254780791|r 96 PGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRI----SCRF- 170 (529)
Q Consensus 96 ~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~----~~r~- 170 (529)
+||+. .-+++.-|.+|.++-+.++++...+|.+ . + .-|+-|.|+||-.+..|+|=+..+ ..++
T Consensus 79 ~prf~-ta~leE~Di~g~~~~~~eL~r~i~~l~~-----~---r---~~Pk~IfV~sTC~seiIGdDl~~va~~l~~~~~ 146 (437)
T 3aek_A 79 EPRFG-TAVLEEQDLAGLADAHKELDREVAKLLE-----R---R---PDIRQLFLVGSCPSEVLKLDLDRAAERLSGLHA 146 (437)
T ss_dssp CCSEE-EEECCGGGGSSSCCHHHHHHHHHHHHHH-----T---C---TTCCEEEEEECHHHHHTTCCHHHHHHHHHHHST
T ss_pred CCCCE-EEECCCCHHHCCCCCHHHHHHHHHHHHH-----H---C---CCCCEEEEECCCCHHHHCCCHHHHHHHHHHHCC
T ss_conf 77414-6654613642557627999999999996-----0---8---998789997468388767789999999987208
Q ss_pred C-EEEEEEECC------CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEE
Q ss_conf 7-589997210------011110367999999997410035767775899951688844422007699999997489048
Q gi|254780791|r 171 P-LRVIIFPVK------VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPI 243 (529)
Q Consensus 171 p-~~~~~~p~~------vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPV 243 (529)
+ +.|..|++. .||++ .+.++|- .... .....++++++ ++|.-+...+-|-...+-|.|
T Consensus 147 ~~v~v~~~~~~g~~~~~~~G~d---~~l~aLv--~~~~---~~~~~~v~i~G-------~~~~~d~~ei~rlL~~~GI~v 211 (437)
T 3aek_A 147 PHVRVYSYTGSGLDTTFTQGED---TCLAAMV--PTLD---TTEAAELIVVG-------ALPDVVEDQCLSLLTQLGVGP 211 (437)
T ss_dssp TTCEEEEEECCTTTCCTTHHHH---HHHHHHG--GGSC---BCCCCCEEEES-------CCCHHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEECCCCCCCCHHHHHH---HHHHHHH--CCCC---CCCCCCCEEEC-------CCCCCHHHHHHHHHHHCCCEE
T ss_conf 9824996248874533679999---9999984--5268---87787621414-------678406999999999869978
Q ss_pred EEEECC
Q ss_conf 852057
Q gi|254780791|r 244 ISAIGH 249 (529)
Q Consensus 244 isgIGH 249 (529)
+.-+..
T Consensus 212 ~~~~p~ 217 (437)
T 3aek_A 212 VRMLPA 217 (437)
T ss_dssp EEEESC
T ss_pred EEECCC
T ss_conf 998389
No 347
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=33.98 E-value=12 Score=15.14 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHH-HHCCCCCCCHHHHHHH
Q ss_conf 8852057775258988-6412377721456763
Q gi|254780791|r 243 IISAIGHETDWTLADY-AADLRAPTPTGAAEMA 274 (529)
Q Consensus 243 VisgIGHE~D~Tl~D~-VAD~Ra~TPTaAAEla 274 (529)
.||--||..|+-+.++ |||+|..|++.-|+.+
T Consensus 381 ~vt~~~~~v~~vVTE~gva~Lrg~~~~era~~l 413 (434)
T 3eh7_A 381 AVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEAL 413 (434)
T ss_dssp CEEECTTTCCEEEETTEEEECTTCCHHHHHHHH
T ss_pred CEEECCCCCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf 634168703599876789982389989999999
No 348
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus}
Probab=33.90 E-value=17 Score=13.81 Aligned_cols=106 Identities=14% Similarity=0.196 Sum_probs=55.0
Q ss_pred CCCEEEEEEC--CCHHHHHHHHHHHHHCCC-EEEE--EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 6528999847--842589999998630597-5899--9721001111036799999999741003576777589995168
Q gi|254780791|r 144 IPKIIAVITS--PTGAVIRDILQRISCRFP-LRVI--IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529)
Q Consensus 144 ~p~~i~vits--~~~a~~~D~~~~~~~r~p-~~~~--~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529)
.++++++++= -+-..+.+++..++.+|| +.+. +..++-.=. .|+..+. ..+|++|++=|=
T Consensus 155 ~~~~~~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~TIC~AT~~RQ-------~a~~~la--------~~vD~miVVGg~ 219 (297)
T 3dnf_A 155 KHERVGIVAQTTQNEEFFKEVVGEIALWVKEVKVINTICNATSLRQ-------ESVKKLA--------PEVDVMIIIGGK 219 (297)
T ss_dssp GCSEEEEEECTTCCHHHHHHHHHHHHHHSSEEEEECCCCSHHHHHH-------HHHHHHG--------GGSSEEEEESCT
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH-------HHHHHHH--------HHCCEEEEECCC
T ss_conf 6676269988644599999999999874666687788777577279-------9999999--------867999996888
Q ss_pred CCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC------CCCCCCHHHH
Q ss_conf 8844422007699999997489048852057775258988641------2377721456
Q gi|254780791|r 219 GSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD------LRAPTPTGAA 271 (529)
Q Consensus 219 GS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD------~Ra~TPTaAA 271 (529)
.|- |.-.|+.-.-....|..- |--..|..-.+|--. --|+||..--
T Consensus 220 nSS------NT~rL~eia~~~~~~t~~-Ie~~~el~~~~~~~~~~IGiTAGASTP~~li 271 (297)
T 3dnf_A 220 NSG------NTRRLYYISKELNPNTYH-IETAEELQPEWFRGVKRVGISAGASTPDWII 271 (297)
T ss_dssp TCH------HHHHHHHHHHHHCSSEEE-ESSGGGCCGGGGTTCSEEEEEECTTCCHHHH
T ss_pred CCC------CHHHHHHHHHHHCCCEEE-ECCHHHCCHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 995------389999999987999699-6983879998937999899867547849999
No 349
>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I
Probab=33.88 E-value=16 Score=13.91 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=18.0
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHC
Q ss_conf 777589995168884442200769999999748
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANS 239 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~ 239 (529)
.+||+.|-++|||-..- -+.+.-+|+.+
T Consensus 56 ~~~di~i~V~GGG~sgQ-----a~AirlaiaRa 83 (138)
T 3jyv_I 56 SNIDIRVRVTGGGHVSQ-----VYAIRQAIAKG 83 (138)
T ss_dssp SSEEEEEEEESCCTTTH-----HHHHHHHHHHT
T ss_pred CCEEEEEEEECCCHHHH-----HHHHHHHHHHH
T ss_conf 66448999965756489-----86999999999
No 350
>3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B
Probab=33.87 E-value=14 Score=14.48 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH--------HCCC-EEEEEEECCCCC
Q ss_conf 0079999999999765401226100163102652899984784258999999863--------0597-589997210011
Q gi|254780791|r 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRIS--------CRFP-LRVIIFPVKVQG 183 (529)
Q Consensus 113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~--------~r~p-~~~~~~p~~vQG 183 (529)
+=+|.+..+.|+.-+.- +. .+ ..++.|-+|.+...+ ..-+..... .||. -.+.-+..
T Consensus 39 IidL~kT~~~L~~A~~~---l~-----~i-~~~~~ilfv~t~~~~-~~~i~~~a~~~~~~~v~~rW~~G~lTN~~~---- 104 (193)
T 3jyv_B 39 VINVGKTWEKLVLAARI---IA-----AI-PNPEDVVAISSRTFG-QRAVLKFAAHTGATPIAGRFTPGSFTNYIT---- 104 (193)
T ss_dssp EECHHHHHHHHHHHHHH---HT-----TS-CSGGGEEECBCSSHH-HHHHHHHHHHHCCBCCBSCCCSCSSSCSSS----
T ss_pred EECHHHHHHHHHHHHHH---HH-----HH-HCCCCEEEEECCHHH-HHHHHHHHHHCCCCEECCCCCCCCCCCEEE----
T ss_conf 97599999999999999---99-----86-179967998274889-999999999818902045004885554011----
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf 1103679999999974100357677758999516888444220076999999974890488520577752589886
Q gi|254780791|r 184 DECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529)
Q Consensus 184 ~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529)
.....+|++++. .+-.|...++.-..+.||||+=+--..|.+.+||+
T Consensus 105 --------------------~~~~~p~l~iv~---------dp~~~~~ai~EA~~l~IPvI~ivDTn~~p~~idyp 151 (193)
T 3jyv_B 105 --------------------RSFKEPRLVIVT---------DPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVA 151 (193)
T ss_dssp --------------------TTCCCCSEEECS---------CTTTSHHHHHHHHHTTCCEEEEECTTCCCSSCSEE
T ss_pred --------------------ECCCCCCCCEEE---------CCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEE
T ss_conf --------------------112358864334---------67664166677875699878750689985446656
No 351
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2}
Probab=33.85 E-value=13 Score=14.76 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=25.4
Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC-CCCCCCHH
Q ss_conf 99951688844422007699999997489048852057775258988641-23777214
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD-LRAPTPTG 269 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD-~Ra~TPTa 269 (529)
+.+.++|+...-.+++||--+.+.-...-+=+-..|.-+ .+..|.+| +-.+|||+
T Consensus 131 ~~~~~~~~~~~~~~AlNdvvi~~~~~~~~~~~~v~id~~---~~~~~~gDGlIvSTptG 186 (292)
T 2an1_A 131 AQVCQQDRQKRISTAINEVVLHPGKVAHMIEFEVYIDET---FAFSQRSDGLIISTPTG 186 (292)
T ss_dssp EEEECC----CEEEESSEEEEEESSTTCCEEEEEEETTE---EEEEEEESEEEEECTGG
T ss_pred EEEEECCCCHHHHHHHEEEEECCCCCCEEEEEEEEECCC---CCEEECCCCEEECCCCC
T ss_conf 776411110000212015540268853379999984562---14477458899986676
No 352
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=33.82 E-value=17 Score=13.80 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.2
Q ss_pred HCCCEEEEECCCCCEECCHHHCCCCCEEEEEEECE
Q ss_conf 31461999848988957778929998699999110
Q gi|254780791|r 458 LKRGYTSIQDTNNNFITQKRNLATKTRILINFFDG 492 (529)
Q Consensus 458 L~RGYaiv~~~~GkiI~s~~~l~~gd~i~i~l~DG 492 (529)
--+||.-+++++|++|+. .+..+++.+.+--.||
T Consensus 47 y~~~yvRItd~dGqVIt~-~~~~~~~~~~~L~~eg 80 (106)
T 3fn2_A 47 YGRGYVRITDKDGQVITY-EDGSVQDKTVFLTNEG 80 (106)
T ss_dssp TTTCEEEEECTTSCBCSC-CCSCSTTEEEEEEECS
T ss_pred HCCCEEEEECCCCCEEEC-CCCCCCCEEEEEECCC
T ss_conf 057417897489888818-9988887078874157
No 353
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprotein subunit; electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=33.81 E-value=17 Score=13.80 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=11.9
Q ss_pred HHHHHHHCCHHHHHCCC
Q ss_conf 99988716967773146
Q gi|254780791|r 445 TTRILQSFAYKNTLKRG 461 (529)
Q Consensus 445 l~~~L~slsP~~~L~RG 461 (529)
+.+.-+.++|.++|..|
T Consensus 494 l~~iK~~~DP~gilNPG 510 (520)
T 1wvf_A 494 EHAIKRAVDPNNILAPG 510 (520)
T ss_dssp HHHHHHHHCTTCCBCTT
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 99999984987577888
No 354
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=33.49 E-value=17 Score=13.76 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHHHHCCCCCCCCCCC--CCCCEEEEEEC-CCH-HHHHHHHHHHHHCCC-EEEE-EEECCCCCCCHHHHHHHHH-HH
Q ss_conf 9976540122610016310--26528999847-842-589999998630597-5899-9721001111036799999-99
Q gi|254780791|r 124 KKKLLEEGLFSDQHKNPIP--FIPKIIAVITS-PTG-AVIRDILQRISCRFP-LRVI-IFPVKVQGDECPKEIANAI-LQ 196 (529)
Q Consensus 124 k~~L~~eGlfd~~~k~~lP--~~p~~i~vits-~~~-a~~~D~~~~~~~r~p-~~~~-~~p~~vQG~~a~~~i~~ai-~~ 196 (529)
++.|++||.|=-...+..- -=|.+|||+-= |+. +--..|+|.|...-. ++|. +++...+..+.+.+.+... ..
T Consensus 12 ~~~l~~e~i~~~~~~~a~~q~irpl~I~ilNlMP~k~~TE~qf~rll~~~~~qv~v~~~~~~~h~~~~~~~~~l~~~y~~ 91 (301)
T 2vdj_A 12 RKVLQEENIFVMTKERAETQDIRALKIAILNLMPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKT 91 (301)
T ss_dssp -----CCSCCCCCCCCCCCTTSCCEEEEEECCCSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEEC
T ss_pred HHHHHHCCCEEECHHHHCCCCCCCHHHEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCC
T ss_conf 78998789777775564136651102111006895188999999985689842899988826625899859999987208
Q ss_pred HHHHCCCCCCCCCCEEEEE
Q ss_conf 9741003576777589995
Q gi|254780791|r 197 LNTLKEGRTCPRPDIIILA 215 (529)
Q Consensus 197 ~~~~~~~~~~~~~D~iii~ 215 (529)
++... ..+||.+||.
T Consensus 92 ~~~i~----~~~yDglIIT 106 (301)
T 2vdj_A 92 FRDIE----NEKFDGLIIT 106 (301)
T ss_dssp HHHHT----TSCEEEEEEC
T ss_pred HHHHC----CCCCCEEEEC
T ss_conf 99860----2667679971
No 355
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=33.43 E-value=17 Score=13.75 Aligned_cols=47 Identities=15% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHCCC-EEEEEEECCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHC
Q ss_conf 630597-5899972100--1111036799999999741003576777589995168884442200
Q gi|254780791|r 166 ISCRFP-LRVIIFPVKV--QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF 227 (529)
Q Consensus 166 ~~~r~p-~~~~~~p~~v--QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~F 227 (529)
++.++| ++| .|+.| +......++.++|..+-. +.|+++|+= .||..|
T Consensus 140 l~~~~~~~kI--VPI~~g~~~~~~~~~~g~~L~~~~~--------~~~~l~VaS-----sDlsHy 189 (293)
T 3bcz_A 140 MESHKDEFTI--IPVLVGALSESKEQEFGKLFSKYLA--------DPSNLFVVS-----SDFCHW 189 (293)
T ss_dssp TGGGTTSCEE--EEEEECCCCHHHHHHHHHHHHHHHT--------CTTEEEEEE-----CCCCEE
T ss_pred HHHCCCCCEE--EEEEECCCCHHHHHHHHHHHHHHHC--------CCCCEEEEE-----CCCCCC
T ss_conf 9755898229--9998247998999999999999963--------889389996-----674345
No 356
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=33.04 E-value=17 Score=13.70 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=16.6
Q ss_pred ECCCHHHHHHHHHH----HHHCCC-EEEEEEE
Q ss_conf 47842589999998----630597-5899972
Q gi|254780791|r 152 TSPTGAVIRDILQR----ISCRFP-LRVIIFP 178 (529)
Q Consensus 152 ts~~~a~~~D~~~~----~~~r~p-~~~~~~p 178 (529)
||++++|++||+.. ++..+| +.|++.+
T Consensus 29 ~~~sS~GvR~Fl~~~l~~~k~~NP~v~i~v~~ 60 (102)
T 1s3a_A 29 RSPGSQGVRDFIEKRYVELKKANPDLPILIRE 60 (102)
T ss_dssp SSCCCHHHHHHHHHTHHHHHHHSTTCCEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 89986879999998689999988995199988
No 357
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ...
Probab=32.98 E-value=17 Score=13.70 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=44.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHH--HCCCEEEEEEE----CCCCCCCHHHHH-HHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 652899984784258999999863--05975899972----100111103679-99999997410035767775899951
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRIS--CRFPLRVIIFP----VKVQGDECPKEI-ANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~--~r~p~~~~~~p----~~vQG~~a~~~i-~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
..|||+|+..+.-. --++.-.+. +|..+++.++. ..|.+..-..-. -..+..++.. ..||+|+|.
T Consensus 2 ~~kKvlill~dGf~-~~E~~~p~~~L~~ag~~v~v~s~~~~~~v~~~~g~~v~~d~~~~~~~~~------~~yD~lvIp- 73 (197)
T 2rk3_A 2 ASKRALVILAKGAE-EMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKE------GPYDVVVLP- 73 (197)
T ss_dssp CCCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTT------CCCSEEEEC-
T ss_pred CCCEEEEEECCCCC-HHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCEECCCCCHHHCCCC------CCCEEEEEC-
T ss_conf 98899999489977-9999999999997899899998689971772799688267757766767------797099985-
Q ss_pred CC-CCHHHHHHCCHH--HHHHHHHHCCCEEEEEECCCC
Q ss_conf 68-884442200769--999999748904885205777
Q gi|254780791|r 217 GG-GSIEDLWHFNDE--MIVRAIANSSIPIISAIGHET 251 (529)
Q Consensus 217 GG-GS~eDL~~FN~e--~laraI~~~~iPVisgIGHE~ 251 (529)
|| +...+|+. |.. .++|..++..-| |.||.|-.
T Consensus 74 GG~~~~~~l~~-~~~l~~~i~~~~~~~k~-i~aiC~G~ 109 (197)
T 2rk3_A 74 GGNLGAQNLSE-SAAVKEILKEQENRKGL-IATICAGP 109 (197)
T ss_dssp CCHHHHHHHHH-CHHHHHHHHHHHHTTCE-EEEETTTH
T ss_pred CCCCHHHHHCC-CHHHHHHHHHHHHCCCE-EEEECHHH
T ss_conf 99703867445-99999999998744968-96007178
No 358
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=32.93 E-value=17 Score=13.69 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 1036799999999741003576777589995168884442200769999999748904885
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.....|++..+.. ++|+||+++=|.+.. ++.- ..-+.+..++.||+.
T Consensus 89 ~~~~~i~~~~~~~----------~~dliVvG~~~~~~~-~~gs---~~~~l~~~~~~pVlv 135 (141)
T 1jmv_A 89 DLGQVLSDAIEQY----------DVDLLVTGHHQDFWS-KLMS---STRQVMNTIKIDMLV 135 (141)
T ss_dssp CHHHHHHHHHHHT----------TCCEEEEEECCCCHH-HHHH---HHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHHHC----------CCCEEEEECCCCCCC-CCCC---HHHHHHHHCCCCEEE
T ss_conf 7478899998727----------888899932899988-4272---999998616999999
No 359
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=32.83 E-value=11 Score=15.26 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred ECCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 516888444220076999999974
Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIAN 238 (529)
Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~~ 238 (529)
++|||-..||.-|=+|.|---|++
T Consensus 24 ~qgGgrKGDLSrFiEeAVr~~~fe 47 (51)
T 2k6l_A 24 AQGGGRKGDLSRFIEDAVRAYLFE 47 (51)
T ss_dssp HHCSCCSSCHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 507986442999999999999999
No 360
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=32.72 E-value=17 Score=13.66 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=50.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 89998478425899999986305975899972100111103679999999974100357677758999516888444220
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
||-||- +....+.++..+-.+|++++..... -.+|++.+... .||+||+- - +|=-
T Consensus 8 rILiVD--D~~~~~~~l~~~L~~~G~~v~~a~~----------~~eAl~~l~~~-------~~dlvilD---~---~mP~ 62 (140)
T 3grc_A 8 RILICE--DDPDIARLLNLMLEKGGFDSDMVHS----------AAQALEQVARR-------PYAAMTVD---L---NLPD 62 (140)
T ss_dssp EEEEEC--SCHHHHHHHHHHHHHTTCEEEEECS----------HHHHHHHHHHS-------CCSEEEEC---S---CCSS
T ss_pred EEEEEE--CCHHHHHHHHHHHHHCCCEEEEECC----------HHHHHHHHHCC-------CCCEEEEC---C---CCCC
T ss_conf 799996--9999999999999987999999899----------99999999718-------99899853---6---6899
Q ss_pred CCHHHHHHHHHH----CCCEEEEEECCCC
Q ss_conf 076999999974----8904885205777
Q gi|254780791|r 227 FNDEMIVRAIAN----SSIPIISAIGHET 251 (529)
Q Consensus 227 FN~e~laraI~~----~~iPVisgIGHE~ 251 (529)
.|-.++++.|-. ..+|||-=.|+..
T Consensus 63 ~dG~~l~~~ir~~~~~~~~pii~lt~~~~ 91 (140)
T 3grc_A 63 QDGVSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp SCHHHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred CCHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 97899999998472569997899966787
No 361
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor}
Probab=32.68 E-value=17 Score=13.66 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=46.8
Q ss_pred CCCEEEEEECCCHH-----HHHHHHHHHHHCCCEEEEEEEC----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 65289998478425-----8999999863059758999721----00111103679999999974100357677758999
Q gi|254780791|r 144 IPKIIAVITSPTGA-----VIRDILQRISCRFPLRVIIFPV----KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529)
Q Consensus 144 ~p~~i~vits~~~a-----~~~D~~~~~~~r~p~~~~~~p~----~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529)
++|||+|+-.+.-. +.-|+++ |.++++.+... +|.+..-.. +.+=..+.. .....||+|++
T Consensus 8 m~kkv~i~v~~Gf~~~E~~~p~~vLr----rag~~v~~~s~~~~~~V~~~~G~~--i~~d~~l~d----~~~~d~d~lii 77 (208)
T 3ot1_A 8 MSKRILVPVAHGSEEMETVIIVDTLV----RAGFQVTMAAVGDKLQVQGSRGVW--LTAEQTLEA----CSAEAFDALAL 77 (208)
T ss_dssp -CCEEEEEECTTCCHHHHHHHHHHHH----HTTCEEEEEESSSCSEEECTTSCE--EECSEEGGG----CCGGGCSEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCEEECCCCE--EECCCCHHH----CCCCCCEEEEE
T ss_conf 88669999579972999999999999----889989999879996177089988--965777577----57024279981
Q ss_pred ECCCCCHHHHHHCCHH--HHHHHHHHCCCEEEEEE
Q ss_conf 5168884442200769--99999974890488520
Q gi|254780791|r 215 ARGGGSIEDLWHFNDE--MIVRAIANSSIPIISAI 247 (529)
Q Consensus 215 ~RGGGS~eDL~~FN~e--~laraI~~~~iPVisgI 247 (529)
.=|.|....|.. |.. .++|..+....+|++.+
T Consensus 78 pGg~~~~~~l~~-~~~l~~~lr~~~~~~~~i~a~~ 111 (208)
T 3ot1_A 78 PGGVGGAQAFAD-STALLALIDAFSQQGKLVAAIC 111 (208)
T ss_dssp CCCHHHHHHHHT-CHHHHHHHHHHHHTTCEEEEET
T ss_pred CCCCCHHHHHHC-CHHHHHHHHHHHHCCCCCCHHH
T ss_conf 677755766505-9999999998754276200034
No 362
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics; 2.01A {Thermus thermophilus HB8}
Probab=32.60 E-value=17 Score=13.65 Aligned_cols=95 Identities=18% Similarity=0.259 Sum_probs=50.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEEC-CCCCCCHHHHHHH---HHHHHH--HHCCCCCCCCCCEEEEECCCC
Q ss_conf 8999847842589999998630597-58999721-0011110367999---999997--410035767775899951688
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFP-LRVIIFPV-KVQGDECPKEIAN---AILQLN--TLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~-~vQG~~a~~~i~~---ai~~~~--~~~~~~~~~~~D~iii~RGGG 219 (529)
+|||| ..||++=+-+++.|.+| | +++..+-+ .--|+ .|.. .+.... ..........+|++.++=|+|
T Consensus 6 ~VaIv-GATG~vG~ell~lL~~h-P~~el~~laS~rsaGk----~i~~~~~~l~~~~~~~~~~~~~~~~~Divf~alp~~ 79 (345)
T 2ozp_A 6 TLSIV-GASGYAGGEFLRLALSH-PYLEVKQVTSRRFAGE----PVHFVHPNLRGRTNLKFVPPEKLEPADILVLALPHG 79 (345)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHTC-TTEEEEEEBCSTTTTS----BGGGTCGGGTTTCCCBCBCGGGCCCCSEEEECCCTT
T ss_pred EEEEE-CCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCC----CHHHHCCCCCCCCCCEECCHHHCCCCCEEEECCCCC
T ss_conf 89998-91519999999999819-9967999982687998----488959343586663215866813477899915897
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
Q ss_conf 844422007699999997489048852057775258988641237772
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TP 267 (529)
--.. ++...++.-.. ++|.=||.|..-|
T Consensus 80 ~S~~--------~~~~~~~~g~~------------VID~Ss~fR~~~~ 107 (345)
T 2ozp_A 80 VFAR--------EFDRYSALAPV------------LVDLSADFRLKDP 107 (345)
T ss_dssp HHHH--------THHHHHTTCSE------------EEECSSTTSCSCH
T ss_pred HHHE--------ECHHHHCCCCE------------EEECCCCEECCCH
T ss_conf 0001--------11314325857------------8617866250563
No 363
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp}
Probab=32.35 E-value=17 Score=13.62 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf 58999999863059758999721001111036799999999741003576777589995168884442200769999999
Q gi|254780791|r 157 AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 (529)
Q Consensus 157 a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI 236 (529)
..+.++...++.- .+.+... -....++..++ .. .+|.|.+.-+|+.--+....+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-g~~v~~~------v~t~~~a~~a~----~~-------Gad~Igv~~~~~~~~~~~~~~~~~l~~~~ 177 (232)
T 3igs_A 116 VAVEALLARIHHH-HLLTMAD------CSSVDDGLACQ----RL-------GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp SCHHHHHHHHHHT-TCEEEEE------CCSHHHHHHHH----HT-------TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCEEEEE------CCCHHHHHHHH----HC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 8999999999754-9869998------69999999999----68-------99889973577877876703678899997
Q ss_pred HHCCCEEEEEECCCC
Q ss_conf 748904885205777
Q gi|254780791|r 237 ANSSIPIISAIGHET 251 (529)
Q Consensus 237 ~~~~iPVisgIGHE~ 251 (529)
-.+.+|||++=|=.+
T Consensus 178 ~~~~ipvia~GGI~t 192 (232)
T 3igs_A 178 HDAGCRVIAEGRYNS 192 (232)
T ss_dssp HHTTCCEEEESCCCS
T ss_pred HCCCCEEEEECCCCC
T ss_conf 337823998589899
No 364
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=32.18 E-value=17 Score=13.60 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 01111036799999999741003576777589995168884442200769999999748904885
Q gi|254780791|r 181 VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 181 vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+.+......|++..+.. .+|+||++.=|-|.-.=|.|-+- .-.-+-.+++||+.
T Consensus 82 ~~~g~~~~~I~~~a~~~----------~~dliV~G~~~~s~~~~~~~Gs~-~~~vl~~~~~pVlv 135 (137)
T 2z08_A 82 LLEGVPAEAILQAARAE----------KADLIVMGTRGLGALGSLFLGSQ-SQRVVAEAPCPVLL 135 (137)
T ss_dssp EEESSHHHHHHHHHHHT----------TCSEEEEESSCTTCCSCSSSCHH-HHHHHHHCSSCEEE
T ss_pred EECCCHHHHHHHHHHHC----------CCCEEEEECCCCCCCCCCCCCCH-HHHHHHCCCCCEEE
T ss_conf 98266489899876635----------68889994589987655503739-99999706998999
No 365
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme MNMG; 5-carboxymethylaminomethyl uridine, wobble uridine, FAD, FAD-binding protein; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=31.95 E-value=16 Score=13.83 Aligned_cols=63 Identities=17% Similarity=0.093 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCC----------HHHHHHHHHHCCCEEE--EEECCC
Q ss_conf 1110367999999997410035767775899951688844422007----------6999999974890488--520577
Q gi|254780791|r 183 GDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFN----------DEMIVRAIANSSIPII--SAIGHE 250 (529)
Q Consensus 183 G~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN----------~e~laraI~~~~iPVi--sgIGHE 250 (529)
|-.-+.+|-.-+.++.. ++-.+|.-|==|.-.++|..| -..+.|.|-...=-.| =|..||
T Consensus 300 Gpr~cpsiedk~~rf~~--------r~~~~vqLrpE~~~~~~~nlvGfqT~L~~~~Q~rvfr~IPGLEnAef~R~Gy~hr 371 (637)
T 2zxi_A 300 GPRYCPSIEDKIVKFPD--------KERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIE 371 (637)
T ss_dssp --CCCCSHHHHHHHCTT--------CSCCEEEEEECCSSCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCEEEE
T ss_pred CCCCCCCCCCCCCCCCC--------CCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEHHHHH
T ss_conf 88899975546645788--------8753243245456676799678457788999999985261410231410024320
Q ss_pred CCC
Q ss_conf 752
Q gi|254780791|r 251 TDW 253 (529)
Q Consensus 251 ~D~ 253 (529)
-|+
T Consensus 372 ndf 374 (637)
T 2zxi_A 372 YDV 374 (637)
T ss_dssp EEE
T ss_pred CCC
T ss_conf 123
No 366
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.30A {Pseudomonas putida KT2440}
Probab=31.58 E-value=18 Score=13.52 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=19.9
Q ss_pred CCCEEEEEECCCH-----HHHHHHHHHHHH-CCC-EEEEEE
Q ss_conf 6528999847842-----589999998630-597-589997
Q gi|254780791|r 144 IPKIIAVITSPTG-----AVIRDILQRISC-RFP-LRVIIF 177 (529)
Q Consensus 144 ~p~~i~vits~~~-----a~~~D~~~~~~~-r~p-~~~~~~ 177 (529)
-|+|||++.-+.- ++.-|+++..++ +-+ |++.+.
T Consensus 4 ap~~i~ill~~gf~~~~~~~~~e~Lr~An~l~~~~~~~~~v 44 (202)
T 3gra_A 4 APYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPL 44 (202)
T ss_dssp -CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 98499999979872888999999999987536984799999
No 367
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=31.43 E-value=18 Score=13.50 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 299999999999740
Q gi|254780791|r 16 SVSELSYHLKHIVES 30 (529)
Q Consensus 16 svs~l~~~i~~~l~~ 30 (529)
.+.++-..++..++.
T Consensus 52 d~~~~~~~v~~~l~~ 66 (489)
T 2uyt_A 52 DVDSLESAIRLGLNK 66 (489)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 899999999999999
No 368
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=31.42 E-value=18 Score=13.50 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=50.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 28999847842589999998630597-58999721001111036799999999741003576777589995168884442
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
.+|-|| .+....+..++.+=+.++ +++... .+-.+|+..+... ..||+||+ |+
T Consensus 5 ~~ILiV--DD~~~~r~~l~~~L~~~G~~~v~~a----------~~g~eal~~l~~~------~~~dlii~--------D~ 58 (140)
T 3lua_A 5 GTVLLI--DYFEYEREKTKIIFDNIGEYDFIEV----------ENLKKFYSIFKDL------DSITLIIM--------DI 58 (140)
T ss_dssp CEEEEE--CSCHHHHHHHHHHHHHHCCCEEEEE----------CSHHHHHTTTTTC------CCCSEEEE--------CS
T ss_pred CEEEEE--ECCHHHHHHHHHHHHHCCCEEEEEE----------CCHHHHHHHHHCC------CCCCEEEE--------EC
T ss_conf 979999--4999999999999986799089998----------9999999999738------99859998--------68
Q ss_pred H---HCCHHHHHHHHHH----CCCEEEEEECCCCCCHHHH
Q ss_conf 2---0076999999974----8904885205777525898
Q gi|254780791|r 225 W---HFNDEMIVRAIAN----SSIPIISAIGHETDWTLAD 257 (529)
Q Consensus 225 ~---~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~D 257 (529)
+ ..|-+.+++.+.+ +.+|||-=-|+..+.....
T Consensus 59 ~mP~~~~g~~l~~~ir~~~~~~~~piI~lT~~~~~~~~~~ 98 (140)
T 3lua_A 59 AFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHA 98 (140)
T ss_dssp CSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 9999998889999876442468998899827999999999
No 369
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=31.38 E-value=18 Score=13.49 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=43.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 52899984784258999999863059758999721001111036799999999741003576777589995168884442
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
-+||-||- +...++.+++.+=..+++++.- ..--|+ +|++.+... .||+|++== .|
T Consensus 2 ~~rILiVD--D~~~~r~~l~~~L~~~g~~v~~--~a~~g~-------~al~~~~~~-------~~dlii~D~------~m 57 (120)
T 1tmy_A 2 GKRVLIVD--DAAFMRMMLKDIITKAGYEVAG--EATNGR-------EAVEKYKEL-------KPDIVTMDI------TM 57 (120)
T ss_dssp CCEEEEEC--SCHHHHHHHHHHHHHTTCEEEE--EESSHH-------HHHHHHHHH-------CCSEEEEEC------SC
T ss_pred CCCEEEEE--CCHHHHHHHHHHHHHCCCEEEE--EECCHH-------HHHHHHHHC-------CCCEEEEEC------CC
T ss_conf 98699991--9999999999999987998999--989999-------999999836-------999999963------68
Q ss_pred HHCCHHHHHHHHHH--CCCEEEEEECCCCCCH
Q ss_conf 20076999999974--8904885205777525
Q gi|254780791|r 225 WHFNDEMIVRAIAN--SSIPIISAIGHETDWT 254 (529)
Q Consensus 225 ~~FN~e~laraI~~--~~iPVisgIGHE~D~T 254 (529)
=..|-.++++.|-+ ..+|||-=-||..+..
T Consensus 58 P~~~G~e~~~~ir~~~~~~~ii~lt~~~~~~~ 89 (120)
T 1tmy_A 58 PEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAM 89 (120)
T ss_dssp GGGCHHHHHHHHHHHCTTCCEEEEECTTCHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH
T ss_conf 99979999999997587997899974289999
No 370
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=31.27 E-value=15 Score=14.30 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 86229999999999974001718999997054
Q gi|254780791|r 13 PEYSVSELSYHLKHIVESNLSHVCVRGEISGY 44 (529)
Q Consensus 13 ~~~svs~l~~~i~~~l~~~~~~~~v~gEis~~ 44 (529)
|+.+..++...++..+... ...++.+++..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 95 (323)
T 3f8d_A 65 IEIQASDMIKVFNKHIEKY-EVPVLLDIVEKI 95 (323)
T ss_dssp TTEEHHHHHHHHHHHHHTT-TCCEEESCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHH-CCCCCCCEEEEE
T ss_conf 4465799999987644432-332001379998
No 371
>2yv4_A Hypothetical protein PH0435; alpha and beta proteins (A+B), SUA5 domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=31.18 E-value=18 Score=13.47 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=37.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 528999847842589999998630597-5899972100111103679999999974100357677758999516888444
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
-+++||+++.. |+ ..++..+. --++++..+=.+|+.++..+ +|+|++-
T Consensus 31 ~~~vgvl~~~~--------------~~~~~~~~lg~--~~~~~A~~Ly~~LR~~D~~~-------vd~I~~e-------- 79 (105)
T 2yv4_A 31 GKKVGVIGSES--------------YNADEFFFLGS--SVEEVAKNLFKALRYMDKAG-------VDVVIAE-------- 79 (105)
T ss_dssp TCCEEEEESSC--------------TTCSEEEECCS--SHHHHHHHHHHHHHHHHHTT-------CSEEEEE--------
T ss_pred CCEEEEEECCC--------------CCCCEEEECCC--CHHHHHHHHHHHHHHHHHCC-------CCEEEEE--------
T ss_conf 98599993476--------------57754897798--99999999999999982579-------9989998--------
Q ss_pred HHHCCHHHHHHHHHH
Q ss_conf 220076999999974
Q gi|254780791|r 224 LWHFNDEMIVRAIAN 238 (529)
Q Consensus 224 L~~FN~e~laraI~~ 238 (529)
+|.++.+..||.+
T Consensus 80 --~~~~~g~g~AImn 92 (105)
T 2yv4_A 80 --GVEERGLGLAVMN 92 (105)
T ss_dssp --EESGGGHHHHHHH
T ss_pred --CCCCCCCHHHHHH
T ss_conf --1899781899999
No 372
>1y1u_A Signal transducer and activator of transcription 5A; STAT, DNA-binding, SH2 domain, transcription regulation, signaling protein; 3.21A {Mus musculus}
Probab=31.06 E-value=18 Score=13.45 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 323467776699999888778
Q gi|254780791|r 275 VPVKEHLQSSLINLEARLNNI 295 (529)
Q Consensus 275 vp~~~EL~~~L~~l~~RL~~a 295 (529)
.....+|...+.++..+....
T Consensus 11 sek~~eL~q~leeL~~~~qe~ 31 (585)
T 1y1u_A 11 SQKHLQINQRFEELRLITQDT 31 (585)
T ss_dssp CCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999
No 373
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=31.04 E-value=16 Score=13.93 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEE
Q ss_conf 8888888986229999999999974001718999997054356888627999
Q gi|254780791|r 5 SQKNSLDHPEYSVSELSYHLKHIVESNLSHVCVRGEISGYRGIHSSGHAYFS 56 (529)
Q Consensus 5 ~~~~~~~~~~~svs~l~~~i~~~l~~~~~~~~v~gEis~~~~~~~sGH~Yf~ 56 (529)
+..+.|+..+||++||...+...+.++ +.+.|.| |+.+. ..++|++-|=
T Consensus 16 ~~~~~m~~~~~tl~eia~~l~~~~~G~-~~~~I~~-i~~l~-~a~~~~isF~ 64 (374)
T 2iu8_A 16 PRGSHMSQSTYSLEQLADFLKVEFQGN-GATLLSG-VEEIE-EAKTAHITFL 64 (374)
T ss_dssp -----CCSCCEEHHHHHHHTTCEEESC-TTCEECE-ECCTT-TCCTTEEEEC
T ss_pred CCCCCCCCCCEEHHHHHHHHCCEEECC-CCEEEEC-CCCHH-HCCCCCEEEE
T ss_conf 267767889787999999759999789-9808957-74965-5899858998
No 374
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=30.95 E-value=18 Score=13.44 Aligned_cols=90 Identities=16% Similarity=0.297 Sum_probs=50.2
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEE-EC-CC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 528999847842589999998630597-589997-21-00-111103679999999974100357677758999516888
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFP-LRVIIF-PV-KV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~-p~-~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
-+.|||.-|--|- + -+++-+.+.+| .+++.| .. .+ =|.-..++|.+-...+-..-.. ..+|+|||+=.=-|
T Consensus 5 ~~pIgvfDSGvGG-L-svl~~l~~~lP~~~~iY~~D~~~~PYG~ks~~ei~~~~~~~~~~l~~---~~~~~iViACNTas 79 (269)
T 3ist_A 5 KQAIGFIDSGVGG-L-TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVD---RGIKMLVIACNTAT 79 (269)
T ss_dssp CCCEEEEESSSTT-H-HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHH---TTCSEEEECCHHHH
T ss_pred CCCEEEEECCCCH-H-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH---CCCCEEEEECCCHH
T ss_conf 7968999589757-9-99999999789999899944889998999999999999999999986---69998999468557
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 444220076999999974890488520
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgI 247 (529)
.- .+-.--..+++|||..|
T Consensus 80 ~~--------al~~lr~~~~ipiigvi 98 (269)
T 3ist_A 80 AA--------ALYDIREKLDIPVIGVI 98 (269)
T ss_dssp HH--------HHHHHHHHCSSCEEESH
T ss_pred HH--------HHHHHHHHCCCCEECCC
T ss_conf 99--------99999975799764266
No 375
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=30.79 E-value=18 Score=13.42 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=12.0
Q ss_pred EEEECCCCCHHHHHHCCHHHHHHHHHHCCCE
Q ss_conf 9995168884442200769999999748904
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEMIVRAIANSSIP 242 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~laraI~~~~iP 242 (529)
+|++.+++. +.|--..|++....-.+|
T Consensus 216 ~ii~~~~a~----i~~aGP~Vv~~~~ge~l~ 242 (304)
T 2f9y_B 216 LNIAEPKAL----IGFAGPRVIEQTVREKLP 242 (304)
T ss_dssp EEEECTTCB----EESSCHHHHHHHHTSCCC
T ss_pred EEEEECCCC----CCCCCHHHHHHHCCCCCC
T ss_conf 899955400----036586666543077388
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=30.78 E-value=18 Score=13.42 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=37.1
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE------CCCCCHHHHHHCCHHHHHHHHHHCCCEE
Q ss_conf 9758999721001111036799999999741003576777589995------1688844422007699999997489048
Q gi|254780791|r 170 FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILA------RGGGSIEDLWHFNDEMIVRAIANSSIPI 243 (529)
Q Consensus 170 ~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~------RGGGS~eDL~~FN~e~laraI~~~~iPV 243 (529)
.|.++++.-.+..|.++..++...-..+ .+|-+|+. |||+ +- -.+..+.+||
T Consensus 220 ~p~e~~LVl~a~~~~~~~~~~~~~~~~~----------~~~~~IlTKlDe~~~~G~-~l-----------s~~~~~~~Pi 277 (304)
T 1rj9_A 220 EPKEVWLVLDAVTGQNGLEQAKKFHEAV----------GLTGVIVTKLDGTAKGGV-LI-----------PIVRTLKVPI 277 (304)
T ss_dssp CCSEEEEEEETTBCTHHHHHHHHHHHHH----------CCSEEEEECTTSSCCCTT-HH-----------HHHHHHCCCE
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCC----------CCCEEEEECCCCCCCCCH-HH-----------HHHHHHCCCE
T ss_conf 9855899961103835677999987427----------997799972468997709-99-----------9999989797
Q ss_pred -EEEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf -8520577752589886412377721456763
Q gi|254780791|r 244 -ISAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529)
Q Consensus 244 -isgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529)
..|.|. . ..|+...+|..-|+.+
T Consensus 278 ~~i~~Gq-~-------p~Dl~~~~~~~~~~~l 301 (304)
T 1rj9_A 278 KFVGVGE-G-------PDDLQPFDPEAFVEAL 301 (304)
T ss_dssp EEEECSS-S-------TTCEEECCHHHHHHHH
T ss_pred EEEECCC-C-------HHHCCCCCHHHHHHHH
T ss_conf 9995899-9-------5748538999999998
No 377
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=30.64 E-value=18 Score=13.40 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=30.6
Q ss_pred HHHHHHCCHHHHHHHHHH--CCCEEEEEECCCCCC-HHHHHHHC-----CCCCCCHHHHHHH
Q ss_conf 444220076999999974--890488520577752-58988641-----2377721456763
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIAN--SSIPIISAIGHETDW-TLADYAAD-----LRAPTPTGAAEMA 274 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~--~~iPVisgIGHE~D~-Tl~D~VAD-----~Ra~TPTaAAEla 274 (529)
..+|. .|.|.+..++-. ..-||...+||-+|. |-+..|.. .|-|+||-.|-+.
T Consensus 165 ~~~l~-~~ge~vG~~lrt~~~~kPvyVS~Gh~i~Le~A~~iv~~~~~~~yRlPEP~R~Ad~~ 225 (246)
T 3ga2_A 165 YTDII-IDGEVYGRALRTRRDVKPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVRLADLE 225 (246)
T ss_dssp EEEEE-ETTEEEEEEECSSTTSCCEEEEEEESSCHHHHHHHHHHTCCTTCSSCHHHHHHHHH
T ss_pred CCCCC-CCCEEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 44216-69969999996589988999817978799999999999844899898279999999
No 378
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=30.39 E-value=12 Score=15.05 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=27.4
Q ss_pred CCHHHHHHC-CHHHHHH--------------HHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf 884442200-7699999--------------9974890488520577752589886
Q gi|254780791|r 219 GSIEDLWHF-NDEMIVR--------------AIANSSIPIISAIGHETDWTLADYA 259 (529)
Q Consensus 219 GS~eDL~~F-N~e~lar--------------aI~~~~iPVisgIGHE~D~Tl~D~V 259 (529)
=|+.|+|.. -.+.+.. .-+..|.||++|+|+..+.+..++-
T Consensus 289 ~sltD~wG~~l~~~l~~~~~~~tlS~~r~~~~~g~~P~PI~~a~~~kp~~~~~~~~ 344 (749)
T 1cjy_A 289 VTFTDIFGMLIGETLIHNRMNTTLSSLKEKVNTAQCPLPLFTCLHVKPDVSELMFA 344 (749)
T ss_dssp CCHHHHHHHHHHHHHHGGGTTCBSGGGGGGTTTSCSCEEEEEEEECCSSCCCGGGS
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 75003889999997026887787688899986789988678863637887546677
No 379
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1} SCOP: d.348.1.1 d.348.1.1
Probab=30.27 E-value=19 Score=13.35 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=9.7
Q ss_pred CCCEEEEEEECCCCEE
Q ss_conf 8862799987489479
Q gi|254780791|r 49 SSGHAYFSLKDNHSRI 64 (529)
Q Consensus 49 ~sGH~Yf~lkd~~a~i 64 (529)
.+|.|||.|++.++.+
T Consensus 11 ~~g~~rfrL~a~nGei 26 (118)
T 2k49_A 11 SNDQFKFVLKAGNGEV 26 (118)
T ss_dssp TTSCEEEEEECSSSCE
T ss_pred CCCCEEEEEEECCCCE
T ss_conf 8997999999289988
No 380
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A*
Probab=30.26 E-value=14 Score=14.50 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=19.1
Q ss_pred CCCEEEEEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 884379999971016800799999999997
Q gi|254780791|r 97 GSSKYQIIIESLIPSGSGTLLTALEKRKKK 126 (529)
Q Consensus 97 ~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~ 126 (529)
..|.-=|+|++|--+|. .|....+.+++.
T Consensus 100 l~gk~VLIVDDi~dTG~-Tl~~~~~~L~~~ 128 (213)
T 2jky_A 100 LVGKNVLIVDEVDDTRT-TLHYALSELEKD 128 (213)
T ss_dssp CTTCEEEEEEEEESSSH-HHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHH-HHHHHHHHHHHC
T ss_conf 68987999954203028-999999999853
No 381
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=30.19 E-value=19 Score=13.34 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=54.8
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 631026528999847842589999998630597-5899972100111103679999999974100357677758999516
Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529)
...|.-|-||-||= +....+..+..+=+.++ +.++. +.--|+ +||+.+... ..||+||+==
T Consensus 7 ~~~~g~P~rVLIVD--D~~~~r~~l~~~L~~~~~~~vv~--~A~~g~-------eAl~~l~~~------~~~DliilD~- 68 (145)
T 3kyj_B 7 HHHHGSPYNVMIVD--DAAMMRLYIASFIKTLPDFKVVA--QAANGQ-------EALDKLAAQ------PNVDLILLDI- 68 (145)
T ss_dssp ----CCSEEEEEEC--SCHHHHHHHHHHHTTCTTEEEEE--EESSHH-------HHHHHHHHC------TTCCEEEECT-
T ss_pred CCCCCCCCEEEEEE--CCHHHHHHHHHHHHHCCCCEEEE--EECCHH-------HHHHHHHHC------CCCCEEEECC-
T ss_conf 89899777899996--98999999999998599946999--989999-------999999836------9998999878-
Q ss_pred CCCHHHHHHCCHHHHHHHHH---HCCCEEEEEECCCCCCHHHH
Q ss_conf 88844422007699999997---48904885205777525898
Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAIA---NSSIPIISAIGHETDWTLAD 257 (529)
Q Consensus 218 GGS~eDL~~FN~e~laraI~---~~~iPVisgIGHE~D~Tl~D 257 (529)
.|=..|-.++++.|- .+++|+|+..+++-+.....
T Consensus 69 -----~MP~~dG~e~~~~ir~~~~~~i~ii~~t~~~~~~~~~~ 106 (145)
T 3kyj_B 69 -----EMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAAR 106 (145)
T ss_dssp -----TSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHH
T ss_pred -----CCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHH
T ss_conf -----99999999999999856996939999960799899999
No 382
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=29.94 E-value=19 Score=13.31 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=26.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 2899984784258999999863059758999
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVII 176 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~ 176 (529)
|+|-+|.+|||+|--+.--.|+.+|+.+|+=
T Consensus 2 kkli~i~G~TgsGKS~Lai~LA~~~~geIIs 32 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCEEEC
T ss_conf 8679998976044999999999987998981
No 383
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris}
Probab=29.86 E-value=19 Score=13.30 Aligned_cols=78 Identities=8% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHH--CCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHHHHCCHHH
Q ss_conf 2589999998630--5975899972100-1111036799999999741003576777589995168-8844422007699
Q gi|254780791|r 156 GAVIRDILQRISC--RFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDLWHFNDEM 231 (529)
Q Consensus 156 ~a~~~D~~~~~~~--r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL~~FN~e~ 231 (529)
...+-+..+.+.+ .-++.|++|..+. -|-.-..+.+..|.. . .++++.+.-+. +..+.. ..
T Consensus 117 ~~~~~~~f~~i~~a~~~~~Pi~iYn~P~~~g~~ls~~~~~~L~~--~--------~~nvi~~k~~s~~~~~~~-----~~ 181 (313)
T 3dz1_A 117 DEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM--D--------SASCVMLKHEDWPGLEKI-----TT 181 (313)
T ss_dssp HHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH--H--------CSSEEEEEECCSSCHHHH-----HH
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHH--C--------CCCEEEEEECCCCHHHHH-----HH
T ss_conf 44778999999985125773687437642576776999999984--0--------887489984788669999-----99
Q ss_pred HHHHHHH---CCCEEEEEEC
Q ss_conf 9999974---8904885205
Q gi|254780791|r 232 IVRAIAN---SSIPIISAIG 248 (529)
Q Consensus 232 laraI~~---~~iPVisgIG 248 (529)
+.+..-. -++-|++|-+
T Consensus 182 l~~~~~~~~~~~~~v~~G~d 201 (313)
T 3dz1_A 182 LRGFQKDGSLRPLSILCGNG 201 (313)
T ss_dssp HHHHHHHTSSCCCEEEECGG
T ss_pred HHHHCCCCCCCCCEEEECCH
T ss_conf 99853002577735863737
No 384
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=29.48 E-value=19 Score=13.25 Aligned_cols=80 Identities=11% Similarity=0.226 Sum_probs=46.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
|||-||- +.....+++...=..|++++.... .|+ .|++.+... .||+|++-- .|=
T Consensus 2 kriLiVd--D~~~~~~~l~~~L~~~g~~v~~a~---~g~-------~al~~~~~~-------~pdlillD~------~mp 56 (124)
T 1mb3_A 2 KKVLIVE--DNELNMKLFHDLLEAQGYETLQTR---EGL-------SALSIAREN-------KPDLILMDI------QLP 56 (124)
T ss_dssp CEEEEEC--SCHHHHHHHHHHHHHTTCEEEEES---CHH-------HHHHHHHHH-------CCSEEEEES------BCS
T ss_pred CEEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC---CHH-------HHHHHHHHC-------CCCEEEECC------CCC
T ss_conf 7599995--899999999999998799999989---999-------999999837-------999999789------999
Q ss_pred HCCHHHHHHHHHH----CCCEEEEEECCC
Q ss_conf 0076999999974----890488520577
Q gi|254780791|r 226 HFNDEMIVRAIAN----SSIPIISAIGHE 250 (529)
Q Consensus 226 ~FN~e~laraI~~----~~iPVisgIGHE 250 (529)
-.|-.++++.|-+ ..+|||-=-||.
T Consensus 57 ~~~G~el~~~ir~~~~~~~iPii~ls~~~ 85 (124)
T 1mb3_A 57 EISGLEVTKWLKEDDDLAHIPVVAVTAFA 85 (124)
T ss_dssp SSBHHHHHHHHHHSTTTTTSCEEEEC---
T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 98479999999828877999689998989
No 385
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=29.41 E-value=19 Score=13.24 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6777669999988877
Q gi|254780791|r 279 EHLQSSLINLEARLNN 294 (529)
Q Consensus 279 ~EL~~~L~~l~~RL~~ 294 (529)
+++...|..+...|..
T Consensus 5 a~~~~~l~~~~~el~~ 20 (497)
T 3iox_A 5 ADYQAKLTAYQTELAR 20 (497)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 386
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=29.40 E-value=19 Score=13.23 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=38.5
Q ss_pred CEEEEEECCCHHHH---HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 28999847842589---999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 146 KIIAVITSPTGAVI---RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 146 ~~i~vits~~~a~~---~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
++|++++.+..+.. ..|...+++.... . .....-|.....+...++...-... +++|+|+.
T Consensus 119 ~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~ai~~-------- 182 (280)
T 3gyb_A 119 THIAHLRVGSGAGLRRFESFEATMRAHGLE-P--LSNDYLGPAVEHAGYTETLALLKEH-----PEVTAIFS-------- 182 (280)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHHHTTCC-C--EECCCCSCCCHHHHHHHHHHHHHHC-----TTCCEEEE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCC-C--CCCCCCCCCCHHHHHHHHHHHHHCC-----CCCCEEEE--------
T ss_conf 467630123217899988887789972997-4--2010134453778899999998538-----99838995--------
Q ss_pred HHHHCCHHHHH---HHHHH--CCCE---EEEEEC
Q ss_conf 42200769999---99974--8904---885205
Q gi|254780791|r 223 DLWHFNDEMIV---RAIAN--SSIP---IISAIG 248 (529)
Q Consensus 223 DL~~FN~e~la---raI~~--~~iP---VisgIG 248 (529)
+||+.-. ++... ..+| -|.|++
T Consensus 183 ----~~d~~a~g~~~~l~~~g~~iP~dv~vvg~d 212 (280)
T 3gyb_A 183 ----SNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp ----SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred ----CCHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf ----688999999999998799899876999989
No 387
>3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ...
Probab=29.27 E-value=19 Score=13.22 Aligned_cols=44 Identities=18% Similarity=0.390 Sum_probs=35.3
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
Q ss_conf 77758999516888444220076999999974890488520577752589886
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~V 259 (529)
..||+|+|. | +=.|...++.-..+.||||+=+--..|.+.+||.
T Consensus 148 ~~P~~vii~-------d--~~~~~~ai~Ea~~l~IPvI~ivDTn~~p~~idyp 191 (218)
T 3ofo_B 148 GLPDALFVI-------D--ADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFV 191 (218)
T ss_dssp SCCSSEEEE-------E--TGGGHHHHHHHHHTTCCEEEECCTTSCGGGCSEE
T ss_pred CCCCEEEEC-------C--CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEE
T ss_conf 587347742-------8--5031799999998599779985079897657777
No 388
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=29.25 E-value=19 Score=13.21 Aligned_cols=20 Identities=20% Similarity=0.621 Sum_probs=9.1
Q ss_pred EEEECCCCCHHHHHHCCHHH
Q ss_conf 99951688844422007699
Q gi|254780791|r 212 IILARGGGSIEDLWHFNDEM 231 (529)
Q Consensus 212 iii~RGGGS~eDL~~FN~e~ 231 (529)
+++.+||+....-+++||--
T Consensus 143 ~~~~~~~~~~~~~~alNdvv 162 (307)
T 1u0t_A 143 VVVRQGGRIVNRGWALNEVS 162 (307)
T ss_dssp EEEEETTEEEEEEEESSEEE
T ss_pred EEECCCCEEEEECCCCCEEE
T ss_conf 99816980553010122368
No 389
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83}
Probab=29.11 E-value=19 Score=13.20 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=41.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 89998478425899999986305975899-97210011110367999999997410035767775899951688844422
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
|||||-. |..=+-+++.+..+-.+++. ++.. .+..+-.....+....+.....++|++|++=+
T Consensus 11 rv~iiG~--G~mG~~~~~~l~~~~~~elv~v~~~------~~~~~~~~~~~~~~~~d~~~~~~~D~vi~~t~-------- 74 (304)
T 3bio_A 11 RAAIVGY--GNIGRYALQALREAPDFEIAGIVRR------NPAEVPFELQPFRVVSDIEQLESVDVALVCSP-------- 74 (304)
T ss_dssp EEEEECC--SHHHHHHHHHHHHCTTEEEEEEECC-------------CCTTSCEESSGGGSSSCCEEEECSC--------
T ss_pred EEEEECC--CHHHHHHHHHHHCCCCCEEEEEECC------CHHHHHHHCCCCCCHHHHHHCCCCCEEEEECC--------
T ss_conf 7999898--6999999999973999489999858------98884432268786766986358987999079--------
Q ss_pred HCCHHHHHHHHHHCCCEEEEEEC
Q ss_conf 00769999999748904885205
Q gi|254780791|r 226 HFNDEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 226 ~FN~e~laraI~~~~iPVisgIG 248 (529)
.+...+++++..+..+|||+..|
T Consensus 75 ~~~~~~~~~~~l~~g~~vv~~~~ 97 (304)
T 3bio_A 75 SREVERTALEILKKGICTADSFD 97 (304)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCC
T ss_pred CHHHHHHHHHHHHHCCCEEEECC
T ss_conf 54479999999983897798368
No 390
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=29.11 E-value=19 Score=13.20 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 77758999516888444220076999999974890488520577752589886412377721456763323467776699
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSLI 286 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAElavp~~~EL~~~L~ 286 (529)
..||+|+|+ | +-.|...++.-..+.||||+=|---.|.+.+||. +|..++-...+.
T Consensus 157 ~~Pd~v~v~-------d--~~~~~~AI~EA~~l~IPvIaivDTn~~p~~Idyp---------------IP~NDds~~sI~ 212 (256)
T 2vqe_B 157 RLPDAIFVV-------D--PTKEAIAVREARKLFIPVIALADTDSDPDLVDYI---------------IPGNDDAIRSIQ 212 (256)
T ss_dssp SCCSEEEES-------C--TTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEE---------------CCSCSSCHHHHH
T ss_pred CCCCEEEEC-------C--CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEE---------------EECCCCHHHHHH
T ss_conf 689779963-------7--7500889999998589557761389880005446---------------546886198999
Q ss_pred HHHHHHHHHH
Q ss_conf 9998887789
Q gi|254780791|r 287 NLEARLNNII 296 (529)
Q Consensus 287 ~l~~RL~~a~ 296 (529)
-+-.-+..++
T Consensus 213 li~~~l~~ai 222 (256)
T 2vqe_B 213 LILSRAVDLI 222 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 391
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=29.07 E-value=19 Score=13.19 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=40.9
Q ss_pred HCCCCEEEEEEECCCCCCCCCC-EE-EEEEE------CC--------CCEEEEEEECCC-CCCCCCCCCCCCEEEEEEEE
Q ss_conf 0017189999970543568886-27-99987------48--------947999997352-10586681459889999996
Q gi|254780791|r 30 SNLSHVCVRGEISGYRGIHSSG-HA-YFSLK------DN--------HSRIDAIIWKGT-LNKIEFLPEEGIEFLVIGKI 92 (529)
Q Consensus 30 ~~~~~~~v~gEis~~~~~~~sG-H~-Yf~lk------d~--------~a~i~~~~~~~~-~~~~~~~~~~G~~v~~~g~~ 92 (529)
..+..|-+.|.|-+.-.....| ++ =|+|- |. .--.++++|... +..+.-.++.|++|.|.|++
T Consensus 20 rsvNkV~LiG~v~d~e~~~~~~~~V~~FslAt~~~~~~~~~ge~~e~Tewh~Vv~fg~~lae~~~~yl~KG~~V~VeG~L 99 (164)
T 3k81_C 20 KSVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNGRL 99 (164)
T ss_dssp CCEEEEEEEEEEECCCCEESSSCEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCEEEECCEE
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCEEEEEEEEEEEEECHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 77418999983699532242897379999850565030789741000107999998879999999870689999999998
Q ss_pred E
Q ss_conf 6
Q gi|254780791|r 93 T 93 (529)
Q Consensus 93 ~ 93 (529)
.
T Consensus 100 r 100 (164)
T 3k81_C 100 R 100 (164)
T ss_dssp E
T ss_pred E
T ss_conf 8
No 392
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=29.07 E-value=19 Score=13.19 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q ss_conf 898622999999999997
Q gi|254780791|r 11 DHPEYSVSELSYHLKHIV 28 (529)
Q Consensus 11 ~~~~~svs~l~~~i~~~l 28 (529)
+...||..|+..-+....
T Consensus 6 ~~~dls~~ei~~ll~~A~ 23 (291)
T 3d6n_B 6 SSLDLTREEVEEILKYAK 23 (291)
T ss_dssp CGGGCCHHHHHHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHHH
T ss_conf 702299999999999999
No 393
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=29.05 E-value=19 Score=13.19 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=45.4
Q ss_pred CCCCEEEEEEEE-EEEC--CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC-CC
Q ss_conf 288437999997-1016--8007999999999976540122610016310265289998478425899999986305-97
Q gi|254780791|r 96 PGSSKYQIIIES-LIPS--GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR-FP 171 (529)
Q Consensus 96 ~~~g~~ql~v~~-i~~~--g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r-~p 171 (529)
...|.|-.-+.- .... ..-++...|+.+-+++..+ -...-..-|+||||..|..|.-++|++...+.. .|
T Consensus 59 ~~~~~FFmR~~f~~~~~~~~~~~l~~~f~~la~~~~m~------~~i~~~~~~~riaIlvS~~g~~l~~ll~~~~~g~L~ 132 (302)
T 3o1l_A 59 NLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMD------WRITDSAQKKRVVLMASRESHCLADLLHRWHSDELD 132 (302)
T ss_dssp TTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCE------EEEEETTSCCEEEEEECSCCHHHHHHHHHHHTTCSC
T ss_pred CCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCE------EEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 99992899999970898779999999876665430401------443255668369999818984399999998779987
Q ss_pred EEEE
Q ss_conf 5899
Q gi|254780791|r 172 LRVI 175 (529)
Q Consensus 172 ~~~~ 175 (529)
.+|.
T Consensus 133 ~~i~ 136 (302)
T 3o1l_A 133 CDIA 136 (302)
T ss_dssp SEEE
T ss_pred EEEE
T ss_conf 2688
No 394
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=29.03 E-value=19 Score=13.19 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=41.6
Q ss_pred EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 79999971016800799999999997654012261001631026528999847842-58999999863059758999721
Q gi|254780791|r 101 YQIIIESLIPSGSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIFPV 179 (529)
Q Consensus 101 ~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~p~ 179 (529)
+++-|-.|.++|. |+++.+.+.+ .+..+||||+.++- .++..|...+. +++..|.
T Consensus 81 ~~iPVVeI~vs~~-Dil~aL~~a~------------------~~~~kIavVgf~~~~~~~~~~~~ll~----~~i~~~~- 136 (225)
T 2pju_A 81 LSVPVILIKPSGY-DVLQFLAKAG------------------KLTSSIGVVTYQETIPALVAFQKTFN----LRLDQRS- 136 (225)
T ss_dssp CSSCEEEECCCHH-HHHHHHHHTT------------------CTTSCEEEEEESSCCHHHHHHHHHHT----CCEEEEE-
T ss_pred CCCCEEEEECCHH-HHHHHHHHHH------------------HHCCCEEEEECCCCCHHHHHHHHHHC----CCEEEEE-
T ss_conf 8998899707876-8999999999------------------75898899937640369999999969----9449999-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 00111103679999999974100357677758999516888444
Q gi|254780791|r 180 KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 180 ~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
++. +.++-..++.+... .+|+|| |||...|
T Consensus 137 -~~~---~~e~~~~v~~l~~~-------G~~vVV---G~~~~~~ 166 (225)
T 2pju_A 137 -YIT---EEDARGQINELKAN-------GTEAVV---GAGLITD 166 (225)
T ss_dssp -ESS---HHHHHHHHHHHHHT-------TCCEEE---ESHHHHH
T ss_pred -ECC---HHHHHHHHHHHHHC-------CCCEEE---CCHHHHH
T ss_conf -668---89999999999986-------997999---8858999
No 395
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.87 E-value=20 Score=13.17 Aligned_cols=83 Identities=23% Similarity=0.178 Sum_probs=49.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH-
Q ss_conf 8999847842589999998630597589997210011110367999999997410035767775899951688844422-
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW- 225 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~- 225 (529)
||-|| .+.+.+..+++..=+.+++++..+.. |+ +|++.+... .||+||+ |++
T Consensus 2 rILvV--dDd~~~~~~l~~~L~~~G~~v~~a~~---~~-------~al~~l~~~-------~~dlii~--------D~~m 54 (121)
T 2pl1_A 2 RVLVV--EDNALLRHHLKVQIQDAGHQVDDAED---AK-------EADYYLNEH-------IPDIAIV--------DLGL 54 (121)
T ss_dssp EEEEE--CSCHHHHHHHHHHHHHTTCEEEEESS---HH-------HHHHHHHHS-------CCSEEEE--------CSCC
T ss_pred EEEEE--ECCHHHHHHHHHHHHHCCCEEEEECC---HH-------HHHHHHHCC-------CCCEEEE--------CCCC
T ss_conf 89999--68999999999999987999999899---99-------999996458-------9989998--------8999
Q ss_pred -HCCHHHHHHHHHHC--CCEEEEEECCCCCCHHH
Q ss_conf -00769999999748--90488520577752589
Q gi|254780791|r 226 -HFNDEMIVRAIANS--SIPIISAIGHETDWTLA 256 (529)
Q Consensus 226 -~FN~e~laraI~~~--~iPVisgIGHE~D~Tl~ 256 (529)
..|-.++++.|-.. .+|||---|+..+.+..
T Consensus 55 p~~dG~e~~~~lr~~~~~~pii~lt~~~~~~~~~ 88 (121)
T 2pl1_A 55 PDEDGLSLIRRWRSNDVSLPILVLTARESWQDKV 88 (121)
T ss_dssp SSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHH
T ss_conf 9987478999999639998189997889999999
No 396
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=28.75 E-value=20 Score=13.15 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCEEEEEECCC-----HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 00163102652899984784-----2589999998630597589997210011110367999999997410035767775
Q gi|254780791|r 136 QHKNPIPFIPKIIAVITSPT-----GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPD 210 (529)
Q Consensus 136 ~~k~~lP~~p~~i~vits~~-----~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D 210 (529)
+|+..-|. .-|++|||-.+ ...-..++..+-+.+++.+.-+.+ -.+ -...|..++....... .+|
T Consensus 5 ~~~~~~p~-~~~~avitvsD~~~~~~D~nGp~L~~~l~~~G~~v~~~~i--v~D-d~~~i~~~~~~~~~~~------~~d 74 (169)
T 1y5e_A 5 EHKKQAPK-EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEI--VKD-DKESIQQAVLAGYHKE------DVD 74 (169)
T ss_dssp -------C-CCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEE--ECS-SHHHHHHHHHHHHTCT------TCS
T ss_pred CCCCCCCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE--CCC-CHHHHHHHHHHHHHCC------CCC
T ss_conf 30012787-8789999981888877685099999999977997789874--589-7999999999998656------983
Q ss_pred EEEEECCCCCHHH
Q ss_conf 8999516888444
Q gi|254780791|r 211 IIILARGGGSIED 223 (529)
Q Consensus 211 ~iii~RGGGS~eD 223 (529)
|||.-||-|..+
T Consensus 75 -vIiT~GGtg~g~ 86 (169)
T 1y5e_A 75 -VVLTNGGTGITK 86 (169)
T ss_dssp -EEEEECCCSSST
T ss_pred -EEEEECCCCCCC
T ss_conf -899734414775
No 397
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=28.73 E-value=6.3 Score=17.58 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.1
Q ss_pred EEEEEEECCC
Q ss_conf 8999997054
Q gi|254780791|r 35 VCVRGEISGY 44 (529)
Q Consensus 35 ~~v~gEis~~ 44 (529)
+.-.+||.++
T Consensus 21 ~lT~~ein~~ 30 (613)
T 3iyd_F 21 YLTYAEVNDH 30 (613)
T ss_dssp ----------
T ss_pred EECHHHHHHH
T ss_conf 4869999976
No 398
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein structure initiative; HET: COA; 2.40A {Shewanella oneidensis mr-1}
Probab=28.37 E-value=14 Score=14.50 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHH-HHCCCCCCCHHHHHHH
Q ss_conf 8852057775258988-6412377721456763
Q gi|254780791|r 243 IISAIGHETDWTLADY-AADLRAPTPTGAAEMA 274 (529)
Q Consensus 243 VisgIGHE~D~Tl~D~-VAD~Ra~TPTaAAEla 274 (529)
.+|--||..|+-+.+| |||+|-.|+...|+-+
T Consensus 372 ~vt~~~~~vd~vVTE~Gva~L~g~s~~era~~l 404 (436)
T 2oas_A 372 GVVTTRAHVHYIVTEYGAANLKGRSLRERAQAL 404 (436)
T ss_dssp CEEECTTTCCEEEETTEEEECTTCCHHHHHHHH
T ss_pred CCCCCCCCCCEEECCCEEEECCCCCHHHHHHHH
T ss_conf 728881208999866768985898999999999
No 399
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=28.27 E-value=20 Score=13.08 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=32.4
Q ss_pred CEEEEEECCC-----------HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 2899984784-----------25899999986305975899972100111103679999999974100357677758999
Q gi|254780791|r 146 KIIAVITSPT-----------GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL 214 (529)
Q Consensus 146 ~~i~vits~~-----------~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii 214 (529)
-|+||||--+ |..+..++...-..+++++.-+. .| + +-...|.+++..+... ++|+||.
T Consensus 6 ~~~aiitigdei~~G~~~D~ng~~~~~~L~~~l~~~G~~v~~~~-iv-~-D~~~~i~~~~~~~~~~-------~~DlVIt 75 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEV-VV-P-EGYDTVVEAIATALKQ-------GARFIIT 75 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEE-EE-C-SSHHHHHHHHHHHHHT-------TCSEEEE
T ss_pred EEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-EE-C-CCHHHHHHHHHHHHHC-------CCCEEEE
T ss_conf 28999996883304773578738999999999997896899998-62-6-7589999999976523-------8888996
Q ss_pred ECCCCC
Q ss_conf 516888
Q gi|254780791|r 215 ARGGGS 220 (529)
Q Consensus 215 ~RGGGS 220 (529)
.=|=|-
T Consensus 76 tGG~g~ 81 (167)
T 2g2c_A 76 AGGTGI 81 (167)
T ss_dssp ESCCSS
T ss_pred CCCCCC
T ss_conf 688759
No 400
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=28.03 E-value=20 Score=13.05 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=10.1
Q ss_pred CEEEEE-ECCCHHHHHHHHHHHH
Q ss_conf 289998-4784258999999863
Q gi|254780791|r 146 KIIAVI-TSPTGAVIRDILQRIS 167 (529)
Q Consensus 146 ~~i~vi-ts~~~a~~~D~~~~~~ 167 (529)
..||++ ...+..-+.++++.+.
T Consensus 61 ~~I~~~~~~~~~~~~~~~~~~~~ 83 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIE 83 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHH
T ss_conf 38999840146720146788999
No 401
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.90 E-value=20 Score=13.04 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=71.3
Q ss_pred CCCEEEEEEEEE--EEC-------CCCEEEEEEEEEEEC----C-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 598899999966--752-------884379999971016----8-00799999999997654012261001631026528
Q gi|254780791|r 82 EGIEFLVIGKIT--TFP-------GSSKYQIIIESLIPS----G-SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKI 147 (529)
Q Consensus 82 ~G~~v~~~g~~~--~y~-------~~g~~ql~v~~i~~~----g-~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~ 147 (529)
.|.-+++.|... .|. -.+.+.+..+.|... | ...|...+++..+++ -|+-
T Consensus 36 ~~~~~lvHgp~GC~~~~~~~~~~~~~~~~~~~sT~l~E~d~VfGg~~kL~~ai~~~~~~~----------------~P~~ 99 (458)
T 1mio_B 36 HNCLPHSHGSQGCCSYHRTVLSRHFKEPAMASTSSFTEGASVFGGGSNIKTAVKNIFSLY----------------NPDI 99 (458)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHHSSCCCCEECCCCTTHHHHCSHHHHHHHHHHHHHHT----------------CCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHC----------------CCCE
T ss_conf 886799888476788886777510378877762579867235475899999999999852----------------9989
Q ss_pred EEEEECCCHHHHHHHH----HHHHHCCCE----EEEEEEC-CCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 9998478425899999----986305975----8999721-0011110--367999999997410035767775899951
Q gi|254780791|r 148 IAVITSPTGAVIRDIL----QRISCRFPL----RVIIFPV-KVQGDEC--PKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 148 i~vits~~~a~~~D~~----~~~~~r~p~----~~~~~p~-~vQG~~a--~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
|+|+|+..++-++|=+ +.++++++. .|+-+++ -..|... ......+|-. .+.......+..|-||
T Consensus 100 I~V~~tC~~~iIGdDi~~v~~~~~~~~~ip~~~~vi~v~t~gf~g~~~~g~~~a~~al~~--~~~~~~~~~~~~vNii-- 175 (458)
T 1mio_B 100 IAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIVN--YLSENTGAKNGKINVI-- 175 (458)
T ss_dssp EEEEECHHHHHHTCCHHHHHHHHHHTTCSCTTCEEEEECCCTTSSCHHHHHHHHHHHHHH--HHCCCCSCCCSCEEEE--
T ss_pred EEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH--HHCCCCCCCCCEEEEE--
T ss_conf 999777649883688999999999854999885389852887767742899999999998--7246778877748998--
Q ss_pred CCCCHHHHHHCCHHHHHHHHHHCCCEEE
Q ss_conf 6888444220076999999974890488
Q gi|254780791|r 217 GGGSIEDLWHFNDEMIVRAIANSSIPII 244 (529)
Q Consensus 217 GGGS~eDL~~FN~e~laraI~~~~iPVi 244 (529)
|| ..|.-|.+++.+-+..+-+.++
T Consensus 176 -g~---~~~~~d~~el~~lL~~~Gi~~~ 199 (458)
T 1mio_B 176 -PG---FVGPADMREIKRLFEAMDIPYI 199 (458)
T ss_dssp -CC---SCCHHHHHHHHHHHHHHTCCEE
T ss_pred -CC---CCCCCCHHHHHHHHHHCCCCEE
T ss_conf -99---8870149999999998299567
No 402
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, archaea, crenarchaea, hypothetical protein; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=27.86 E-value=13 Score=14.73 Aligned_cols=11 Identities=36% Similarity=0.344 Sum_probs=4.9
Q ss_pred CCCCCCCEEEE
Q ss_conf 68145988999
Q gi|254780791|r 78 FLPEEGIEFLV 88 (529)
Q Consensus 78 ~~~~~G~~v~~ 88 (529)
+.+..||++++
T Consensus 73 i~~~~gD~alv 83 (122)
T 2j85_A 73 VKMNEGDEALI 83 (122)
T ss_dssp CCBCTTCEEEE
T ss_pred EEECCCCEEEE
T ss_conf 98368989999
No 403
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=27.76 E-value=20 Score=13.02 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=13.7
Q ss_pred CCEEEEECCCCCHHHHHHCCH
Q ss_conf 758999516888444220076
Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFND 229 (529)
Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~ 229 (529)
...++++=-||..-|+..|+.
T Consensus 163 ~~~~lviDiGggTtd~~~~~~ 183 (320)
T 2zgy_A 163 LDSLLIIDLGGTTLDISQVMG 183 (320)
T ss_dssp TCEEEEEEECSSCEEEEEEEG
T ss_pred CCEEEEEECCCCEEEEEEEEC
T ss_conf 854999983898699999938
No 404
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2ve2_A*
Probab=27.63 E-value=15 Score=14.17 Aligned_cols=38 Identities=11% Similarity=-0.058 Sum_probs=22.7
Q ss_pred CCCCCCCEEEEEECCC-HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 3102652899984784-25899999986305975899972
Q gi|254780791|r 140 PIPFIPKIIAVITSPT-GAVIRDILQRISCRFPLRVIIFP 178 (529)
Q Consensus 140 ~lP~~p~~i~vits~~-~a~~~D~~~~~~~r~p~~~~~~p 178 (529)
.++..|+++.||-+-. |.-+..++..+.. ...+|.++.
T Consensus 182 ~L~~~p~~~~viGgG~ig~e~a~~~~~~~~-~G~~V~vi~ 220 (490)
T 1fec_A 182 YLDEAPKRALCVGGGYISIEFAGIFNAYKA-RGGQVDLAY 220 (490)
T ss_dssp TCSSCCSEEEEECSSHHHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred CHHHCCCCEEEECCCHHHHHHHHHHHHHCC-CCCEEEEEE
T ss_conf 643477625998236434223232244436-776899998
No 405
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=27.44 E-value=21 Score=12.97 Aligned_cols=82 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred CEEEEEECCCHHHHHH-HHHHHH---HCCCEEEEEE-ECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 2899984784258999-999863---0597589997-2100111103679999999974100357677758999516888
Q gi|254780791|r 146 KIIAVITSPTGAVIRD-ILQRIS---CRFPLRVIIF-PVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 146 ~~i~vits~~~a~~~D-~~~~~~---~r~p~~~~~~-p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
++|++|+.-.|--|.+ +.+-+. +.+.+++.++ ++ .+ -+..-.++|+.+-.. ++|.||+.-..++
T Consensus 5 k~i~~i~~~~~npf~~~~~~G~~~aa~~~g~~~~~~~~~--~~--d~~~q~~~i~~~i~~-------~vDgIii~~~d~~ 73 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPS--ST--DAPQQVKIIEDLIAR-------KVDAITIVPNDAN 73 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCS--SS--CHHHHHHHHHHHHHT-------TCSEEEECCSCHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CC--CHHHHHHHHHHHHHC-------CCCEEEEECCCHH
T ss_conf 889999788998699999999999999829989999689--99--999999999999975-------9999999568837
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 4442200769999999748904885
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVis 245 (529)
.-....+...+..||||+
T Consensus 74 -------~~~~~l~~~~~~gIpVv~ 91 (303)
T 3d02_A 74 -------VLEPVFKKARDAGIVVLT 91 (303)
T ss_dssp -------HHHHHHHHHHHTTCEEEE
T ss_pred -------HHHHHHHHHHHCCCEEEE
T ss_conf -------779999999976987999
No 406
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=27.43 E-value=21 Score=12.97 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCCEEEEEECCCHHHHHH-----HHHHHHHC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE---
Q ss_conf 652899984784258999-----99986305-97-589997210011110367999999997410035767775899---
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRD-----ILQRISCR-FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII--- 213 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D-----~~~~~~~r-~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii--- 213 (529)
--.||+||.|.=-.-+-| ....|... .+ .++.++-++ |. -||--+++++-... +||.+|
T Consensus 10 ~~~rI~IV~s~~n~~I~~~ll~~a~~~L~~~g~~~~~i~~~~VP--Ga---~EiP~~~~~l~~~~------~~davIalG 78 (157)
T 2obx_A 10 ETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVP--GA---YEIPLHARTLAETG------RYGAVLGTA 78 (157)
T ss_dssp CCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEES--SG---GGHHHHHHHHHHHT------CCSEEEEEE
T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC--CH---HHHHHHHHHHHHCC------CCCEEEEEE
T ss_conf 78999999811879999999999999999859980537999868--58---78999999998558------987699999
Q ss_pred -EECCCCCHHHHHHCC-HHHHHHHHHHCCCEEEEEEC
Q ss_conf -951688844422007-69999999748904885205
Q gi|254780791|r 214 -LARGGGSIEDLWHFN-DEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 214 -i~RGGGS~eDL~~FN-~e~laraI~~~~iPVisgIG 248 (529)
|+||+=.--|+.|=. ...|.+.--+..+||+.||=
T Consensus 79 ~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GVL 115 (157)
T 2obx_A 79 FVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVL 115 (157)
T ss_dssp ECCCCSSBCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 9971897188999999999999997066987799975
No 407
>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structural genomics consortium (NESG); NMR {Escherichia coli K12} SCOP: d.348.1.1 d.348.1.1
Probab=27.43 E-value=21 Score=12.97 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=8.7
Q ss_pred CCCEEEEEEECCCCEE
Q ss_conf 8862799987489479
Q gi|254780791|r 49 SSGHAYFSLKDNHSRI 64 (529)
Q Consensus 49 ~sGH~Yf~lkd~~a~i 64 (529)
.+|.|||.||+.+..+
T Consensus 27 ~~g~~rfrL~a~nGei 42 (130)
T 2k8e_A 27 SDNQFRFVLKAGNGET 42 (130)
T ss_dssp TTCCEEEEEECTTSCE
T ss_pred CCCCEEEEEECCCCCE
T ss_conf 8997999999199999
No 408
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=27.41 E-value=21 Score=12.97 Aligned_cols=75 Identities=19% Similarity=0.138 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH--HHCCCEEEEEEC------------CCCC
Q ss_conf 36799999999741003576777589995168884442200769999999--748904885205------------7775
Q gi|254780791|r 187 PKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI--ANSSIPIISAIG------------HETD 252 (529)
Q Consensus 187 ~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI--~~~~iPVisgIG------------HE~D 252 (529)
...+..++..+...-. ..+||+|++. | .. .|.+|-|+ +...|||+-=-| +|..
T Consensus 73 ~~~~~~~~~~~~~il~---~~kpD~Vlv~-G-Dr--------~~~la~a~aa~~~~ipi~HiegG~rsg~~~~~~~ee~~ 139 (376)
T 1v4v_A 73 PDLAARILPQAARALK---EMGADYVLVH-G-DT--------LTTFAVAWAAFLEGIPVGHVEAGLRSGNLKEPFPEEAN 139 (376)
T ss_dssp HHHHHHHHHHHHHHHH---HTTCSEEEEE-S-SC--------HHHHHHHHHHHHTTCCEEEETCCCCCSCTTSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHH---CCCCCEEEEE-C-CC--------CHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 9999999999999974---0599989996-8-97--------07999999998629747986617666666766346656
Q ss_pred CHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 2589886412377721456763
Q gi|254780791|r 253 WTLADYAADLRAPTPTGAAEMA 274 (529)
Q Consensus 253 ~Tl~D~VAD~Ra~TPTaAAEla 274 (529)
..++|-.||.-+.+=..+++.+
T Consensus 140 R~~i~~ls~~hf~~~~~~~~~L 161 (376)
T 1v4v_A 140 RRLTDVLTDLDFAPTPLAKANL 161 (376)
T ss_dssp HHHHHHHCSEEEESSHHHHHHH
T ss_pred HHHCCCCCCEEEECCHHHHHHH
T ss_conf 2221433417762668899999
No 409
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=27.30 E-value=21 Score=12.95 Aligned_cols=100 Identities=23% Similarity=0.256 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999765401226100163102652899984784--2589999998630597-589997210011110367999999997
Q gi|254780791|r 122 KRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPT--GAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLN 198 (529)
Q Consensus 122 ~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~--~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~ 198 (529)
++.+.|.+.|. | +-||-+.. +....|++..++..|| ..|+ =|+-+..+.+..|..+
T Consensus 236 ~Ra~~Lv~aGv-D-------------vivid~Ahg~s~~~~~~i~~i~~~~~~~~vi------aGNV~t~~~a~~L~~~- 294 (491)
T 1zfj_A 236 ERAEALFEAGA-D-------------AIVIDTAHGHSAGVLRKIAEIRAHFPNRTLI------AGNIATAEGARALYDA- 294 (491)
T ss_dssp HHHHHHHHHTC-S-------------EEEECCSCTTCHHHHHHHHHHHHHCSSSCEE------EEEECSHHHHHHHHHT-
T ss_pred HHHHHHHHCCC-C-------------EEEEECCCCCCCHHHHHHHHHHHHCCCCCEE------EEEECCHHHHHHHHHH-
T ss_conf 99999997489-8-------------7999535677632578999987535777637------9960679999999984-
Q ss_pred HHCCCCCCCCCCEEEEECCCCCHHH---HHHC------CHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 4100357677758999516888444---2200------769999999748904885205777
Q gi|254780791|r 199 TLKEGRTCPRPDIIILARGGGSIED---LWHF------NDEMIVRAIANSSIPIISAIGHET 251 (529)
Q Consensus 199 ~~~~~~~~~~~D~iii~RGGGS~eD---L~~F------N~e~laraI~~~~iPVisgIGHE~ 251 (529)
..|.|.++-|+||+-- -..+ --.+.+.+.....+|||+-=|--+
T Consensus 295 ---------Gad~v~VGiG~Gs~cttr~~~gvg~pq~tai~~~a~~~~~~~v~IIADGGi~~ 347 (491)
T 1zfj_A 295 ---------GVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKY 347 (491)
T ss_dssp ---------TCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCS
T ss_pred ---------CCHHEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf ---------73122520440321146141376886164999999989864982883588475
No 410
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=27.30 E-value=21 Score=12.95 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHH-HHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
Q ss_conf 1111036799999999-741003576777589995168884442200769999999748904885205777525898864
Q gi|254780791|r 182 QGDECPKEIANAILQL-NTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAA 260 (529)
Q Consensus 182 QG~~a~~~i~~ai~~~-~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VA 260 (529)
.|+.|-..++.+=-++ -... .+| .+.|-+++||-.--...|.+||-.+.- +..+..+-|+.
T Consensus 194 ~~~~Ar~~LI~~NLrLVvsiA-----kky-----~~~g~~~~DLIQEGniGLi~AvekFDp--------~rG~kFSTYA~ 255 (438)
T 1l9z_H 194 EGEAARQHLIEANLRLVVSIA-----KKY-----TGRGLSFLDLIQEGNQGLIRAVEKFEY--------KRRFKFSTYAT 255 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-----HHH-----CCCCCCHHHHHHHHHHHHHHHHHCCCC--------CCCCCHHHHHH
T ss_conf 099999999998199999999-----871-----278999899999999999999980699--------78998699999
No 411
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=27.07 E-value=16 Score=14.03 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=35.1
Q ss_pred EEEEECCC--HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 99984784--25899999986305975899972100111103679999999974100357677758999516888444
Q gi|254780791|r 148 IAVITSPT--GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 148 i~vits~~--~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
.+|-||.- +.=-.+|+..++.+.++++.+..-.-.+. =+ ++...+.+. ..|.+|+==||||.|=
T Consensus 89 ~~vaTsA~R~A~N~~~~~~~i~~~tG~~i~iisg~eEa~----l~--~~gv~~~~~------~~~~lv~DIGGGStEl 154 (508)
T 3hi0_A 89 YVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEAL----YS--AYGVISGFY------QPDGIAGDLGGGSLEL 154 (508)
T ss_dssp EEEECTHHHHSTTHHHHHHHHHHHHTSCEEECCHHHHHH----HH--HHHHHHHSS------SCEEEEEEECSSCEEE
T ss_pred EEEEEHHHHCCCCHHHHHHHHHHHHCCCEEEECHHHHHH----HH--HCCCEEECC------CCCEEEEEECCCCEEE
T ss_conf 999169988593899999999998699769966899999----98--657654124------6886999966985168
No 412
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=26.67 E-value=21 Score=12.87 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=14.5
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf 7775899951688844422007699
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEM 231 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529)
..+|++|-.=|++...+++.+.++.
T Consensus 103 G~iDiLVnnAg~~~~~~~~~~~~~~ 127 (302)
T 1w6u_A 103 GHPNIVINNAAGNFISPTERLSPNA 127 (302)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHH
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 9987899777434468515555888
No 413
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=26.57 E-value=21 Score=12.85 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=44.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHH---HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 2899984784258999999863---0597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRIS---CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~---~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
++|++|+.++..........+. ..+.+++..+... ...++..++.... ..+|+|++.=.++. .
T Consensus 134 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~gi~vv~~~~~-----~~~~~~~~~~~~~--------~~~dai~~~~~~~~-~ 199 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP-----STNEIASTVTVMT--------SKVDAIWVPIDNTI-A 199 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES-----SGGGHHHHHHHHT--------TTCSEEEECSCHHH-H
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----CHHHHHHHHHHCC--------CCCCEEEECCCHHH-H
T ss_conf 78999917960778999999999786569779998358-----8799999998446--------67656996076467-8
Q ss_pred HHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf 422007699999997489048852
Q gi|254780791|r 223 DLWHFNDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 223 DL~~FN~e~laraI~~~~iPVisg 246 (529)
-+.+.+...-...++||++.
T Consensus 200 ----~~~~~~~~~~~~~~~~v~~~ 219 (295)
T 3lft_A 200 ----SGFPTVVSSNQSSKKPIYPS 219 (295)
T ss_dssp ----HTHHHHHHHTTTTCCCEEES
T ss_pred ----HHHHHHHHHHCCCCCCEECC
T ss_conf ----89999998633578752013
No 414
>2at2_A Aspartate carbamoyltransferase; 3.00A {Bacillus subtilis} SCOP: c.78.1.1 c.78.1.1
Probab=26.57 E-value=21 Score=12.85 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2589999998630
Q gi|254780791|r 156 GAVIRDILQRISC 168 (529)
Q Consensus 156 ~a~~~D~~~~~~~ 168 (529)
.-++.|++.....
T Consensus 129 tQaLaD~~Ti~e~ 141 (300)
T 2at2_A 129 TQSLLDLMTIYEE 141 (300)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7999889999998
No 415
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=26.25 E-value=21 Score=12.81 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCH-HHHHHHHH
Q ss_conf 842589999998630597589997210011110-36799999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKVQGDEC-PKEIANAI 194 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a-~~~i~~ai 194 (529)
.+-.++-++.+.+.+.-|+.+++|..+.-|..- +..+.+-+
T Consensus 120 ~~~~~i~~~~~~ia~~~~lpiiiYn~P~~~~~~~~~~l~~~l 161 (309)
T 3fkr_A 120 VPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMA 161 (309)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf 899999999999972248876985167655777889999998
No 416
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=26.15 E-value=19 Score=13.36 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred CEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEC
Q ss_conf 1899999705435688862799987489479999973
Q gi|254780791|r 34 HVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWK 70 (529)
Q Consensus 34 ~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~ 70 (529)
.+..-|-.|||......-|+|||= .+.+++|.
T Consensus 29 DLl~pg~~SNy~~~~~~nhiYfTa-----~ld~A~wg 60 (143)
T 2hw2_A 29 DRLVPGRESNFEAGRIMNHIYITQ-----TLDAAVWG 60 (143)
T ss_dssp CEECSCCBCSSSTTCBCSCEEEES-----BHHHHHHH
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEC-----CCCHHHHH
T ss_conf 540478734557675235799851-----43057789
No 417
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=26.08 E-value=19 Score=13.25 Aligned_cols=12 Identities=25% Similarity=0.233 Sum_probs=6.8
Q ss_pred CCCCCEEEEEEE
Q ss_conf 145988999999
Q gi|254780791|r 80 PEEGIEFLVIGK 91 (529)
Q Consensus 80 ~~~G~~v~~~g~ 91 (529)
++.|+.|++.|.
T Consensus 128 ~~~G~~v~aiG~ 139 (239)
T 1l1j_A 128 VKIGEWAIAIGN 139 (239)
T ss_dssp CCTTCEEEEEEC
T ss_pred CCCCCEEEEEEC
T ss_conf 456987999967
No 418
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=26.06 E-value=22 Score=12.78 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCCCEEEE-
Q ss_conf 5289998478425899999986305975899-9721001111036799999999--------74100357677758999-
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVI-IFPVKVQGDECPKEIANAILQL--------NTLKEGRTCPRPDIIIL- 214 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~r~p~~~~-~~p~~vQG~~a~~~i~~ai~~~--------~~~~~~~~~~~~D~iii- 214 (529)
-++|+++-- .+-+.+-.+..+. ++++++. +.|...+-.....+.++....- +... ......|||..
T Consensus 155 ~l~i~~vGd-~~~v~~S~~~~~~-~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~--~a~~~aDvvyt~ 230 (315)
T 1pvv_A 155 GVKVVYVGD-GNNVAHSLMIAGT-KLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPV--KAVKDADVIYTD 230 (315)
T ss_dssp TCEEEEESC-CCHHHHHHHHHHH-HTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHH--HHTTTCSEEEEC
T ss_pred CCEEEEECC-CCCHHHHHHHHHH-HHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHH--HHHCCCCEEEEH
T ss_conf 877999678-7531568999999-841878998898668868999999999987198599976999--985579999541
Q ss_pred ---ECCCCCHH-------HHHHCCHHHHHHH----HHHCCCEEEEEECCCCCCHHHH
Q ss_conf ---51688844-------4220076999999----9748904885205777525898
Q gi|254780791|r 215 ---ARGGGSIE-------DLWHFNDEMIVRA----IANSSIPIISAIGHETDWTLAD 257 (529)
Q Consensus 215 ---~RGGGS~e-------DL~~FN~e~lara----I~~~~iPVisgIGHE~D~Tl~D 257 (529)
-||..... +=|..|.+.+..+ |+=-|.|+-- |-|++..+.|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~i~mHplP~~R--g~Ei~~~v~~ 285 (315)
T 1pvv_A 231 VWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHR--GEEVTDDVID 285 (315)
T ss_dssp CCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCB--TTTBCHHHHT
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCC--CCCCCHHHHC
T ss_conf 887646610259999877635633999944899989989999878--8700888866
No 419
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris}
Probab=25.99 E-value=22 Score=12.77 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH
Q ss_conf 8425899999986305975899972100-111103679999999974100357677758999516888444220076999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI 232 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l 232 (529)
++-+.+.++.+.+.+.-++.+++|..+. -|-.-..+++..|..+ +-++-|==..|.. +.+
T Consensus 113 ~~~~~~~~~~~~va~~~~~piiiYn~P~~tg~~l~~~~l~~L~~~-----------~~vvgiK~ss~d~--------~~~ 173 (300)
T 3eb2_A 113 LKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEH-----------PRIRYIKDASTNT--------GRL 173 (300)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHTS-----------TTEEEEEECSSBH--------HHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCC-----------CCEEEEECCCCCH--------HHH
T ss_conf 777999999998875589967987366334777369999997154-----------7889974799889--------999
Q ss_pred HHHH--HHCCCEEEEEECCCCCCHHHHHHHCC
Q ss_conf 9999--74890488520577752589886412
Q gi|254780791|r 233 VRAI--ANSSIPIISAIGHETDWTLADYAADL 262 (529)
Q Consensus 233 araI--~~~~iPVisgIGHE~D~Tl~D~VAD~ 262 (529)
.+.+ +...+-|++|-++ ..+..+.+-.
T Consensus 174 ~~~~~~~~~~~~v~~G~d~---~~~~~~~~G~ 202 (300)
T 3eb2_A 174 LSIINRCGDALQVFSASAH---IPAAVMLIGG 202 (300)
T ss_dssp HHHHHHHGGGSEEEECTTS---CHHHHHHTTC
T ss_pred HHHHHHCCCCEEEECCCHH---HHHHHHHCCC
T ss_conf 9999975754005214378---7888760589
No 420
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=25.93 E-value=22 Score=12.76 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHCCCCCEEEEEEECEEEEEEEEECCCC
Q ss_conf 8929998699999110999999505788
Q gi|254780791|r 477 RNLATKTRILINFFDGQANAIVINKAPP 504 (529)
Q Consensus 477 ~~l~~gd~i~i~l~DG~v~a~V~~k~~~ 504 (529)
..+.+||.+. +.||++.+.=....++
T Consensus 254 ~~Ir~gDeVv--v~~~eligvGrA~~sg 279 (306)
T 2q07_A 254 EKIRPNDVVV--FHNSRIFGVGLAAMSG 279 (306)
T ss_dssp TTCCTTCEEE--EECSSCEEEEEESSCH
T ss_pred CCCCCCCEEE--EECCEEEEEEEECCCH
T ss_conf 9999999899--9999899999852799
No 421
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=25.91 E-value=22 Score=12.76 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=48.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 89998478425899999986305975899972100111103679999999974100357677758999516888444220
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
||-||- +-..+.+.+...=++.++.+..+. +...|+..++.. .||+||+- |+
T Consensus 2 rILiVe--Dd~~~~~~l~~~L~~~g~~v~~a~----------~~~~a~~~~~~~-------~~Dlvilp--~~------- 53 (223)
T 2hqr_A 2 RVLLIE--KNSVLGGEIEKGLNVKGFMADVTE----------SLEDGEYLMDIR-------NYDLVMVS--DK------- 53 (223)
T ss_dssp CEEEEC--SCHHHHHHHHHHHGGGTCCEEEES----------SHHHHHHHHTTS-------CCSEEEEC--CT-------
T ss_pred EEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEEC--CC-------
T ss_conf 899993--899999999999998799999989----------999999998458-------99999958--98-------
Q ss_pred CCHHHHHHHHHH--CCCEEEEEECCCCCCHHH---HHHHCCCCCCC
Q ss_conf 076999999974--890488520577752589---88641237772
Q gi|254780791|r 227 FNDEMIVRAIAN--SSIPIISAIGHETDWTLA---DYAADLRAPTP 267 (529)
Q Consensus 227 FN~e~laraI~~--~~iPVisgIGHE~D~Tl~---D~VAD~Ra~TP 267 (529)
|-.++++.|-. ..+|||.--+|....... +.=||-=..-|
T Consensus 54 -~G~~l~~~ir~~~~~~pIi~lt~~~~~~~~~~~l~~Gaddyl~KP 98 (223)
T 2hqr_A 54 -NALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP 98 (223)
T ss_dssp -THHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEETT
T ss_pred -CHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEECC
T ss_conf -899999998764898329982366758999998753997078724
No 422
>1xma_A Predicted transcriptional regulator; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=25.89 E-value=22 Score=12.76 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 0079999999999765401226100163102652899984784258999999863
Q gi|254780791|r 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRIS 167 (529)
Q Consensus 113 ~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~ 167 (529)
.|.+|.. .++|+++||....-...-..-|+++=-||...-+.+.+.+....
T Consensus 76 ~gslYp~----L~rLe~~GlI~s~~~~~~~gr~Rk~Y~IT~~G~~~L~~~~~ew~ 126 (145)
T 1xma_A 76 ETTLYSA----FARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEWE 126 (145)
T ss_dssp HHHHHHH----HHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCHHHH----HHHHHHCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 7761999----99999789669997305789765799989889999999999999
No 423
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=25.54 E-value=22 Score=12.71 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=39.5
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHH---HHHHCCCEEEEEECCCCCCHHH-----HHHHCCCCCCCHHHHHHHCC
Q ss_conf 7775899951688844422007699999---9974890488520577752589-----88641237772145676332
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVR---AIANSSIPIISAIGHETDWTLA-----DYAADLRAPTPTGAAEMAVP 276 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~lar---aI~~~~iPVisgIGHE~D~Tl~-----D~VAD~Ra~TPTaAAElavp 276 (529)
..||+|+|.=|-|...||+ +++.|.+ ..++..-| |.+|.|-.=.-+. ..+...+.---|.+-|..++
T Consensus 144 ~dYdaVfiPGGhG~m~dL~--~~~~l~~ll~~f~~~gk~-VaAICHGPaaLl~a~~g~~~~~G~~vT~f~~~eE~~~~ 218 (291)
T 1n57_A 144 SEYAAIFVPGGHGALIGLP--ESQDVAAALQWAIKNDRF-VISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTP 218 (291)
T ss_dssp CSEEEEEECCSGGGGSSGG--GCHHHHHHHHHHHHTTCE-EEEETTGGGGGGGGTTSCCTTTTCEECCCCGGGGGTTT
T ss_pred CCCCEEEECCCCCHHHHCC--CCHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHCCCCCEECCCEEEECCCHHHHHCC
T ss_conf 3453899899863476621--088999999999975992-89846026765221158862478379616988986301
No 424
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A*
Probab=25.35 E-value=22 Score=12.68 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=51.1
Q ss_pred CCEEEEEECCCHHHHHHH-----HHHHHHC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----
Q ss_conf 528999847842589999-----9986305-97-589997210011110367999999997410035767775899----
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDI-----LQRISCR-FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII---- 213 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~-----~~~~~~r-~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii---- 213 (529)
-.|||||.|.==.-+-|- ...+... .. .++.++-++ |. -||--+++.+-..+ +||.+|
T Consensus 12 ~~rI~IV~s~~n~~I~~~l~~~a~~~l~~~g~~~~~i~v~~VP--Ga---~EiP~~~~~l~~~~------~~d~iIalG~ 80 (154)
T 1rvv_A 12 GLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVP--GA---FEIPFAAKKMAETK------KYDAIITLGT 80 (154)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEES--SG---GGHHHHHHHHHHTS------CCSEEEEEEE
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCEEEECC--CH---HHHHHHHHHHHCCC------CCCEEEEEEE
T ss_conf 9999999802878999999999999999859986551699838--63---17999999985047------7663899999
Q ss_pred EECCCCCHHHHHHCCHHHHHHHH----HHCCCEEEEEEC
Q ss_conf 95168884442200769999999----748904885205
Q gi|254780791|r 214 LARGGGSIEDLWHFNDEMIVRAI----ANSSIPIISAIG 248 (529)
Q Consensus 214 i~RGGGS~eDL~~FN~e~laraI----~~~~iPVisgIG 248 (529)
|+||+=.--|..| ..+++.| .+..+||+.||=
T Consensus 81 VIkGeT~H~e~I~---~~v~~gl~~lsl~~~~PI~~GIL 116 (154)
T 1rvv_A 81 VIRGATTHYDYVC---NEAAKGIAQAANTTGVPVIFGIV 116 (154)
T ss_dssp EECCSSSHHHHHH---HHHHHHHHHHHHHHCSCEEEEEE
T ss_pred EEECCCCHHHHHH---HHHHHHHHHHHHHCCCCEEECCC
T ss_conf 9817884588999---99999999997332998896467
No 425
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavoprotein, FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=25.33 E-value=18 Score=13.51 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCCCCCEEEEEECCC-HHHHHHHHHHHHHCCCEEEEEEE---CCCCCCCHHHHHHHHHHHH
Q ss_conf 102652899984784-25899999986305975899972---1001111036799999999
Q gi|254780791|r 141 IPFIPKIIAVITSPT-GAVIRDILQRISCRFPLRVIIFP---VKVQGDECPKEIANAILQL 197 (529)
Q Consensus 141 lP~~p~~i~vits~~-~a~~~D~~~~~~~r~p~~~~~~p---~~vQG~~a~~~i~~ai~~~ 197 (529)
+...|++++||-+-. |-=+..+++.+ ..+|.++. ...-+. ..+++..+...
T Consensus 181 l~~~p~~v~VIGgG~ig~E~A~~l~~l----G~~Vtli~~~~~ll~~~--d~~~~~~l~~~ 235 (482)
T 1ojt_A 181 LKEVPGKLLIIGGGIIGLEMGTVYSTL----GSRLDVVEMMDGLMQGA--DRDLVKVWQKQ 235 (482)
T ss_dssp CCCCCSEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSSSSSTTS--CHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEEECCCCCCCC--CHHHHHHHHHH
T ss_conf 031699899999789999999999975----99899999468644453--17888876666
No 426
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=25.10 E-value=15 Score=14.11 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHH-HHCCCCCCCHHHHHHHC
Q ss_conf 852057775258988-64123777214567633
Q gi|254780791|r 244 ISAIGHETDWTLADY-AADLRAPTPTGAAEMAV 275 (529)
Q Consensus 244 isgIGHE~D~Tl~D~-VAD~Ra~TPTaAAElav 275 (529)
||-=+|.+|+-+..| |||+|-.|++.-|+-+.
T Consensus 416 vt~~r~~vd~vVTE~Gva~LrG~s~~era~~li 448 (497)
T 2g39_A 416 VDHTEHDVDILVTEQGLADLRGLAPRERARVII 448 (497)
T ss_dssp CSBCGGGCCEEEETTEEEECTTCCHHHHHHHHH
T ss_pred CCCCCCCCCEEECCCEEEEECCCCHHHHHHHHH
T ss_conf 442633056998786899806989999999999
No 427
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=25.08 E-value=22 Score=12.64 Aligned_cols=84 Identities=26% Similarity=0.347 Sum_probs=51.1
Q ss_pred EEEEEECCCHHHHHHHHHHH-HHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 89998478425899999986-30597-58999721001111036799999999741003576777589995168884442
Q gi|254780791|r 147 IIAVITSPTGAVIRDILQRI-SCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDL 224 (529)
Q Consensus 147 ~i~vits~~~a~~~D~~~~~-~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL 224 (529)
+|-|| .+-..+.++++.+ ++.++ +++..... | .+|+..+... .||+||+ |+
T Consensus 10 ~ILiV--DD~~~~~~~l~~~L~~~~~~~~v~~a~~---g-------~eAl~~~~~~-------~pDlill--------D~ 62 (143)
T 3cnb_A 10 SILII--EDDKEFADMLTQFLENLFPYAKIKIAYN---P-------FDAGDLLHTV-------KPDVVML--------DL 62 (143)
T ss_dssp EEEEE--CSCHHHHHHHHHHHHHHCTTCEEEEECS---H-------HHHHHHHHHT-------CCSEEEE--------ET
T ss_pred EEEEE--ECCHHHHHHHHHHHHHCCCCCEEEEECC---H-------HHHHHHHHHC-------CCCEEEE--------EC
T ss_conf 99999--1999999999999982789808999899---9-------9999999727-------9999998--------08
Q ss_pred --HHCCHHHHHHHHHH----CCCEEEEEECCCCCCHHHH
Q ss_conf --20076999999974----8904885205777525898
Q gi|254780791|r 225 --WHFNDEMIVRAIAN----SSIPIISAIGHETDWTLAD 257 (529)
Q Consensus 225 --~~FN~e~laraI~~----~~iPVisgIGHE~D~Tl~D 257 (529)
=..|-.++++.|-+ ..+|||---|+..+.....
T Consensus 63 ~mP~~dG~el~~~ir~~~~~~~ipvI~lt~~~~~~~~~~ 101 (143)
T 3cnb_A 63 MMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSR 101 (143)
T ss_dssp TCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
T ss_conf 889998699999998478889984999984899899999
No 428
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=25.06 E-value=22 Score=12.64 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=42.8
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHC------------CCCCCCCCC
Q ss_conf 6528999847842589999998630597-589997210011110367999999997410------------035767775
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLK------------EGRTCPRPD 210 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~------------~~~~~~~~D 210 (529)
-+.+|-=|-.-+|.... .+.++|| ++++++..+- + +-.|-+.+.... ...+.+.+|
T Consensus 190 ~~~~vlDiG~G~G~~~~----~l~~~~p~~~~~~~Dlp~----~---~~~a~~~~~~~~l~~rv~~~~gD~~~~~~p~~D 258 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISA----AMLKHFPELDSTILNLPG----A---IDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 258 (359)
T ss_dssp TCCEEEEESCTTCHHHH----HHHHHCTTCEEEEEECGG----G---HHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCS
T ss_pred CCCEEEECCCCCCHHHH----HHHHHCCCEEEEEECCHH----H---HHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCC
T ss_conf 78779976798979999----999839922899816688----8---999998667507763452783457763578765
Q ss_pred EEEEECCCCCHHHHHHCCHHHH---HHHHHHCCCE
Q ss_conf 8999516888444220076999---9999748904
Q gi|254780791|r 211 IIILARGGGSIEDLWHFNDEMI---VRAIANSSIP 242 (529)
Q Consensus 211 ~iii~RGGGS~eDL~~FN~e~l---araI~~~~iP 242 (529)
+|++.+- |..|+|+.. .+.|+.+=-|
T Consensus 259 ~v~~~~v------Lh~~~d~~~~~lL~~~~~~L~p 287 (359)
T 1x19_A 259 AVLFCRI------LYSANEQLSTIMCKKAFDAMRS 287 (359)
T ss_dssp EEEEESC------GGGSCHHHHHHHHHHHHTTCCT
T ss_pred EEEEEEE------CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 0455630------1159989999999999973089
No 429
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=25.03 E-value=22 Score=12.63 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=9.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 80079999999999765401
Q gi|254780791|r 112 GSGTLLTALEKRKKKLLEEG 131 (529)
Q Consensus 112 g~G~l~~~~e~lk~~L~~eG 131 (529)
|-|.-...++++++.|...|
T Consensus 36 G~g~~~~~~~~i~~~l~~~g 55 (337)
T 2qv7_A 36 GKEQFKRELPDALIKLEKAG 55 (337)
T ss_dssp TTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 98757999999999999879
No 430
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X*
Probab=25.02 E-value=22 Score=12.63 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred CCCCEEEEEECC-C-HHHHHHHHHHHHHCCCEEEEEE-E--CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 265289998478-4-2589999998630597589997-2--100111103679999999974100357677758999516
Q gi|254780791|r 143 FIPKIIAVITSP-T-GAVIRDILQRISCRFPLRVIIF-P--VKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARG 217 (529)
Q Consensus 143 ~~p~~i~vits~-~-~a~~~D~~~~~~~r~p~~~~~~-p--~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RG 217 (529)
.-|++||||-.. + +..=.-+++.+.+ ++++|+.. | ..|+|..+-.++ .... ..+|+++|++.
T Consensus 20 ~~~ksIAVVGaS~~~~k~g~~v~~~L~~-~g~~V~pVnP~~~~i~G~~~y~sl-------~di~-----~~vD~v~v~~p 86 (144)
T 2d59_A 20 TRYKKIALVGASPKPERDANIVMKYLLE-HGYDVYPVNPKYEEVLGRKCYPSV-------LDIP-----DKIEVVDLFVK 86 (144)
T ss_dssp HHCCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEEECTTCSEETTEECBSSG-------GGCS-----SCCSEEEECSC
T ss_pred HCCCEEEEECCCCCCCCCHHHHHHHHHH-CCCEEEEECCCCEEECCEECCCCH-------HHCC-----CCCCEEEEECC
T ss_conf 7789499986369999729999999997-799799989877067786335601-------2037-----88737999728
Q ss_pred CCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHH
Q ss_conf 8884442200769999999748904885205777525898
Q gi|254780791|r 218 GGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLAD 257 (529)
Q Consensus 218 GGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D 257 (529)
.-..+| +++...+..++.+.-.....+..+.+
T Consensus 87 ~~~v~~--------il~~~~~~g~k~v~~~~g~~~ee~~~ 118 (144)
T 2d59_A 87 PKLTME--------YVEQAIKKGAKVVWFQYNTYNREASK 118 (144)
T ss_dssp HHHHHH--------HHHHHHHHTCSEEEECTTCCCHHHHH
T ss_pred HHHHHH--------HHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 888899--------99999975999999824644999999
No 431
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=25.01 E-value=22 Score=12.63 Aligned_cols=89 Identities=20% Similarity=0.183 Sum_probs=52.4
Q ss_pred CEEEEEECCCHHHHHHH-----HHHHHHC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----E
Q ss_conf 28999847842589999-----9986305-97-589997210011110367999999997410035767775899----9
Q gi|254780791|r 146 KIIAVITSPTGAVIRDI-----LQRISCR-FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII----L 214 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~-----~~~~~~r-~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii----i 214 (529)
.|||||.|.==.-+-|- ...+.+. .+ ..+.++.++ |. -||--+++.+.... +||.+| |
T Consensus 13 ~ri~IV~s~~n~~I~~~l~~ga~~~l~~~g~~~~~i~~~~VP--Ga---~EiP~~~~~l~~~~------~~davIaLG~V 81 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVP--GS---WEIPVAAGELARKE------DIDAVIAIGVL 81 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEES--SG---GGHHHHHHHHHTCT------TCCEEEEEEEE
T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHCEEEEECC--CH---HHHHHHHHHHHHCC------CCCEEEEEEEE
T ss_conf 899999930868999999999999999859982103899869--58---89999999998447------97859999999
Q ss_pred ECCCCCHHHHHHCCHHHHHHHHH----HCCCEEEEEEC
Q ss_conf 51688844422007699999997----48904885205
Q gi|254780791|r 215 ARGGGSIEDLWHFNDEMIVRAIA----NSSIPIISAIG 248 (529)
Q Consensus 215 ~RGGGS~eDL~~FN~e~laraI~----~~~iPVisgIG 248 (529)
+||.=.--|+.| ..+++.|. ...+||+.||=
T Consensus 82 IkGeT~H~e~I~---~~v~~gl~~lsl~~~~PI~~GVL 116 (154)
T 1hqk_A 82 IRGATPHFDYIA---SEVSKGLANLSLELRKPITFGVI 116 (154)
T ss_dssp ECCSSTHHHHHH---HHHHHHHHHHHHHHTSCEEEEEE
T ss_pred EECCCCHHHHHH---HHHHHHHHHHHHCCCCCEEECCC
T ss_conf 817885799999---99999999986115997783611
No 432
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, loop-6, purine biosynthesis; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=24.95 E-value=22 Score=12.62 Aligned_cols=82 Identities=24% Similarity=0.339 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHH---HHHCC--
Q ss_conf 42589999998630597-5899972100111103679999999974100357677758999516888444---22007--
Q gi|254780791|r 155 TGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIED---LWHFN-- 228 (529)
Q Consensus 155 ~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eD---L~~FN-- 228 (529)
.+...-|+++.++..|| ..|+. |+-+..+.+..|... ..|.|.++-|+||.-- ...|-
T Consensus 177 ~s~~~~~~ik~ik~~~p~~~VIa------GNV~T~e~a~~L~~~----------GAD~VkVGiG~Gs~CtTr~~tGvG~p 240 (404)
T 1eep_A 177 HSTRIIELIKKIKTKYPNLDLIA------GNIVTKEAALDLISV----------GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_dssp SSHHHHHHHHHHHHHCTTCEEEE------EEECSHHHHHHHHTT----------TCSEEEECSSCSTTSHHHHHHCCCCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEC------CCCCCHHHHHHHHHC----------CCCEEEECCCCCCCCCCCCEECCCCC
T ss_conf 55889999999998789986771------455569999999975----------99966752557866567411355511
Q ss_pred ----HHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf ----699999997489048852057775
Q gi|254780791|r 229 ----DEMIVRAIANSSIPIISAIGHETD 252 (529)
Q Consensus 229 ----~e~laraI~~~~iPVisgIGHE~D 252 (529)
-.+.+.+.....+|||+.=|--+.
T Consensus 241 q~sAv~~~~~~~~~~~vpIIADGGi~~~ 268 (404)
T 1eep_A 241 QITAICDVYEACNNTNICIIADGGIRFS 268 (404)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEESCCCSH
T ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCC
T ss_conf 4899999999862468766736886875
No 433
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=24.94 E-value=22 Score=12.62 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHCCCEEEEE
Q ss_conf 7699999997489048852
Q gi|254780791|r 228 NDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 228 N~e~laraI~~~~iPVisg 246 (529)
++..+......+.+|||-|
T Consensus 123 ~~~~~~~~a~~~~vPVINa 141 (325)
T 1vlv_A 123 KQETVEKLAEYSGVPVYNG 141 (325)
T ss_dssp CHHHHHHHHHHHCSCEEES
T ss_pred CCCHHHHHHHHCCCCEECC
T ss_conf 4204666665067641417
No 434
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.90 E-value=23 Score=12.62 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHH
Q ss_conf 842589999998630597589997210--011110367999999997410035767775899951688844422007699
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVK--VQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEM 231 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~--vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~ 231 (529)
++-..+-++.+.+.+.-++.+.+|..+ ..+.-.+..+.+.++.+ +.++.+-=.. .|.+.
T Consensus 109 ~~~~~i~~~~~~ia~~~~~pi~iy~~p~~~~~~~~~~~~~~l~~~~-----------p~v~giK~~~--------~~~~~ 169 (289)
T 2yxg_A 109 PTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAEEY-----------SNISAVKEAN--------PNLSQ 169 (289)
T ss_dssp CCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHC-----------TTEEEEEECC--------SCTHH
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHC-----------CCCEEEECCC--------CCHHH
T ss_conf 9999999999999964799889997886345411578899998614-----------3642786289--------76999
Q ss_pred HHHHHHHCCCEEEEEECC
Q ss_conf 999997489048852057
Q gi|254780791|r 232 IVRAIANSSIPIISAIGH 249 (529)
Q Consensus 232 laraI~~~~iPVisgIGH 249 (529)
..+.+...+..|.+|.++
T Consensus 170 ~~~~~~~~~~~v~~g~~~ 187 (289)
T 2yxg_A 170 VSELIHDAKITVLSGNDE 187 (289)
T ss_dssp HHHHHHHTCSEEEESCGG
T ss_pred HHHHHHCCCCEEECCCHH
T ss_conf 999974589528778638
No 435
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=24.85 E-value=23 Score=12.61 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCC----H---------HHHHHHHHHCCCEEEEEE---C
Q ss_conf 10367999999997410035767775899951688844422007----6---------999999974890488520---5
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFN----D---------EMIVRAIANSSIPIISAI---G 248 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN----~---------e~laraI~~~~iPVisgI---G 248 (529)
.++....+.++.++.++ .=+|.++ |.-.|- . -.++.+++.+++|.||=| +
T Consensus 345 ~~a~Kaarfi~lcd~~~-------iPlv~lv-------D~pGf~~G~~~E~~Gi~~~gA~~~~A~a~a~vP~isvi~~k~ 410 (523)
T 1on3_A 345 NASDKAAEFVNFCDSFN-------IPLVQLV-------DVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKA 410 (523)
T ss_dssp HHHHHHHHHHHHHHHTT-------CCEEEEE-------EECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCC-------CEEEEEE-------CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 67899999999887428-------7789994-------278767778999976999999999985367998799985774
Q ss_pred CCC---CCHHHHHHHCCCCCCCHH
Q ss_conf 777---525898864123777214
Q gi|254780791|r 249 HET---DWTLADYAADLRAPTPTG 269 (529)
Q Consensus 249 HE~---D~Tl~D~VAD~Ra~TPTa 269 (529)
+-- =..-..+.+|...+.|||
T Consensus 411 ~G~g~~am~~~~~~~d~~~AwP~a 434 (523)
T 1on3_A 411 YGGSYLAMCNRDLGADAVYAWPSA 434 (523)
T ss_dssp EHHHHHTTTCGGGTCSEEEECTTC
T ss_pred CCHHHHCCCCCCCCCCEEEECCCC
T ss_conf 450231246777887879986755
No 436
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ...
Probab=24.81 E-value=23 Score=12.60 Aligned_cols=94 Identities=18% Similarity=0.343 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC----CHHHHHHC
Q ss_conf 7842589999998630597-589997210011110367999999997410035767775899951688----84442200
Q gi|254780791|r 153 SPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG----SIEDLWHF 227 (529)
Q Consensus 153 s~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG----S~eDL~~F 227 (529)
-.++.-+.++...+.++.+ ..|+ +.+ |-..|++-++..-+ ..|.|+|+||-= .+|++-..
T Consensus 264 Vr~a~dv~~~r~~l~~~g~~i~II---aKI-------E~~~av~NldeIl~-----~sDgIMVARGDLgvEip~e~vp~~ 328 (550)
T 3gr4_A 264 IRKASDVHEVRKVLGEKGKNIKII---SKI-------ENHEGVRRFDEILE-----ASDGIMVARGDLGIEIPAEKVFLA 328 (550)
T ss_dssp CCSHHHHHHHHHHHTTTTTTSEEE---EEE-------CSHHHHHTHHHHHH-----HSSEEEEEHHHHHHHSCGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEE---EEE-------ECCHHHHHHHHHHH-----HCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 687666999999999649984289---965-------21024441677876-----366899955660112899999999
Q ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHH
Q ss_conf 7699999997489048852057775258988641237772145
Q gi|254780791|r 228 NDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGA 270 (529)
Q Consensus 228 N~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaA 270 (529)
=.+ +++.--...-|||+|-- ++| +=..-|+||-|
T Consensus 329 QK~-II~~c~~~gKPVIvATq------mLe--SMi~~p~PTRA 362 (550)
T 3gr4_A 329 QKM-MIGRCNRAGKPVICATQ------MLE--SMIKKPRPTRA 362 (550)
T ss_dssp HHH-HHHHHHHHTCCEEEESS------TTG--GGGTCSSCCHH
T ss_pred HHH-HHHHHHHCCCEEEECCH------HHH--HHHHCCCCCHH
T ss_conf 999-99999874992898457------677--67638999706
No 437
>1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2
Probab=24.77 E-value=23 Score=12.60 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=35.4
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHH--HHHHHHHHCCCEEEEEECCCCCCHH--HHHHHCCCCCCCHH
Q ss_conf 777589995168884442200769--9999997489048852057775258--98864123777214
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDE--MIVRAIANSSIPIISAIGHETDWTL--ADYAADLRAPTPTG 269 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e--~laraI~~~~iPVisgIGHE~D~Tl--~D~VAD~Ra~TPTa 269 (529)
..||+|||.=|-|. +.++ .|++ .+.|..++...|| .+|+|-+ +.| +.+..+.++-|...
T Consensus 60 ~~~d~liipGG~~~-~~~~-~~~~l~~~l~~~~~~~k~i-~aic~g~-~~La~aGlL~g~~~t~~~~ 122 (166)
T 1g2i_A 60 EEFDALVLPGGRAP-ERVR-LNEKAVSIARKMFSEGKPV-ASICHGP-QILISAGVLRGRKGTSYPG 122 (166)
T ss_dssp GGCSEEEECCBSHH-HHHT-TCHHHHHHHHHHHHTTCCE-EEETTTT-HHHHHHTCCTTCEECCCGG
T ss_pred CCCCEEEECCCCCH-HHHC-CCHHHHHHHHHHHHCCCEE-EECCCHH-HHHHHHHHCCCCEEECCHH
T ss_conf 00878998465304-4421-5878899999998649999-8336188-9999745128974633887
No 438
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A
Probab=24.70 E-value=23 Score=12.59 Aligned_cols=37 Identities=5% Similarity=-0.136 Sum_probs=21.3
Q ss_pred HHHHHHCCCEEEEEEC-CCCCC-HHHHHHHCCCCCCCHH
Q ss_conf 9999748904885205-77752-5898864123777214
Q gi|254780791|r 233 VRAIANSSIPIISAIG-HETDW-TLADYAADLRAPTPTG 269 (529)
Q Consensus 233 araI~~~~iPVisgIG-HE~D~-Tl~D~VAD~Ra~TPTa 269 (529)
...+..||.|||.+|- |-.=- .-+=+.+|+|..++.+
T Consensus 133 ~~~~~~~~kP~IAav~G~a~GgG~~lalacD~~ia~~~a 171 (305)
T 3m6n_A 133 FHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGV 171 (305)
T ss_dssp HHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTC
T ss_pred HHHHHCCCCCEEEEECCCEEHHHHHHHHHHHHHHCCCCC
T ss_conf 999756999899998870508999999985477053443
No 439
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.28 E-value=23 Score=12.53 Aligned_cols=159 Identities=15% Similarity=0.150 Sum_probs=80.8
Q ss_pred CCCCCCCEEEEEEEEE--EEC--CCCEEE-------------EEEEEEEEC-----CCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6814598899999966--752--884379-------------999971016-----800799999999997654012261
Q gi|254780791|r 78 FLPEEGIEFLVIGKIT--TFP--GSSKYQ-------------IIIESLIPS-----GSGTLLTALEKRKKKLLEEGLFSD 135 (529)
Q Consensus 78 ~~~~~G~~v~~~g~~~--~y~--~~g~~q-------------l~v~~i~~~-----g~G~l~~~~e~lk~~L~~eGlfd~ 135 (529)
+-|=.++-.++.|.+. +|. -++.+. ...++|... |.-.|...+.++.++
T Consensus 62 ~~pI~Dav~ivHGP~GCa~y~~~~rr~~~~~~~~~~~~~~~~~~sT~l~E~dvVfGG~~kL~~aI~e~~~~--------- 132 (533)
T 1mio_A 62 MGPIKDMVHITHGPIGCSFYTWGGRRFKSKPENGTGLNFNEYVFSTDMQESDIVFGGVNKLKDAIHEAYEM--------- 132 (533)
T ss_dssp CTTCTTEEEEEEEEHHHHHTTSSCSCBCCCCTTSSCCCCTTCCEEEEECHHHHHHTTHHHHHHHHHHHHHH---------
T ss_pred HCCCCCEEEEEECCHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCEECCCHHHHHHHHHHHHHH---------
T ss_conf 32357669997778131045633420125665677644466333226986613318789999999999985---------
Q ss_pred CCCCCCCCCCCEEEEEECCCHHHHHH----HHHHHHHCCCEEEEEEECC-CCCCCHHHHH---HHHH-HHHHHHCCCCCC
Q ss_conf 00163102652899984784258999----9998630597589997210-0111103679---9999-999741003576
Q gi|254780791|r 136 QHKNPIPFIPKIIAVITSPTGAVIRD----ILQRISCRFPLRVIIFPVK-VQGDECPKEI---ANAI-LQLNTLKEGRTC 206 (529)
Q Consensus 136 ~~k~~lP~~p~~i~vits~~~a~~~D----~~~~~~~r~p~~~~~~p~~-vQG~~a~~~i---~~ai-~~~~~~~~~~~~ 206 (529)
.-|+-|+|+|+..++.++| +++.++++++..|+.+++. ..|..-..-- ..+| +.+-...+ ...
T Consensus 133 -------~~P~~I~V~tTC~~elIGDDi~~v~~~~~~~~g~pVi~v~~~Gf~g~s~~~G~~~a~~ai~~~l~~~~~-~~~ 204 (533)
T 1mio_A 133 -------FHPAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGN-KEQ 204 (533)
T ss_dssp -------TCCSEEEECCCHHHHHHTCCHHHHHHHHHHHHSSCEEECCCCTTSSSSTHHHHHHHHHHHHHHTTBCCC-CCC
T ss_pred -------CCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCC
T ss_conf -------499899997787899862689999999889758976998778667865421899999999998425677-667
Q ss_pred CCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf 7775899951688844422007699999997489048852057775258988641
Q gi|254780791|r 207 PRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAAD 261 (529)
Q Consensus 207 ~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD 261 (529)
...+|-||+ + =.+..|..++-|-...+-+.|++-+. -|.|+.|+-.-
T Consensus 205 ~~~~VNiiG---~---~~~~~D~~ei~~lL~~~Gi~v~~~~~--g~~s~eei~~~ 251 (533)
T 1mio_A 205 KKYSINVLG---E---YNIGGDAWEMDRVLEKIGYHVNATLT--GDATYEKVQNA 251 (533)
T ss_dssp CTTEEEEEE---E---CCBTSHHHHHHHHHHHHTCEEEEEEE--TTCCHHHHHBT
T ss_pred CCCEEEEEC---C---CCCCCCHHHHHHHHHHCCCCEEEECC--CCCCHHHHHHC
T ss_conf 786599988---8---88843699999999983996489728--99877888637
No 440
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=24.23 E-value=23 Score=12.52 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=70.6
Q ss_pred EEEEEEEECCCCEEEEEEEEEEECC--CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 9999667528843799999710168--00799999999997654012261001631026528999847842589999998
Q gi|254780791|r 88 VIGKITTFPGSSKYQIIIESLIPSG--SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQR 165 (529)
Q Consensus 88 ~~g~~~~y~~~g~~ql~v~~i~~~g--~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~ 165 (529)
..-++++++..++..+++..+.... ..+|.. -+.++ .+-..|.-+-+||+|+|.|--=.+..
T Consensus 79 ~~~Rvs~~p~~~g~~~vlR~l~~~~~~l~~L~~-~~~l~---------------~~~~~~~GliLvtGpTGSGKTTtl~a 142 (356)
T 3jvv_A 79 ARFRVNAFNQNRGAGAVFRTIPSKVLTMEELGM-GEVFK---------------RVSDVPRGLVLVTGPTGSGKSTTLAA 142 (356)
T ss_dssp EEEEEEEEEETTEEEEEEEEECCSCCCTTTTTC-CHHHH---------------HHHHCSSEEEEEECSTTSCHHHHHHH
T ss_pred EEEEEEEECCCCCCEEEEEECCCCCCHHHHHCC-CHHHH---------------HHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 389999502579713677505520042867377-08999---------------99861797799989999985799999
Q ss_pred HH----HCCCEEEEEE--------EC----CC--CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHC
Q ss_conf 63----0597589997--------21----00--1111036799999999741003576777589995168884442200
Q gi|254780791|r 166 IS----CRFPLRVIIF--------PV----KV--QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF 227 (529)
Q Consensus 166 ~~----~r~p~~~~~~--------p~----~v--QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~F 227 (529)
+- .....+|+-+ +. .+ +......+...+|+.+-+.. ||+|+|+- +
T Consensus 143 ll~~~~~~~~~~iitiEdPiE~~~~~~~~~~~q~~~~~~~~~f~~~lr~~LR~d-------PDvI~vGE----------i 205 (356)
T 3jvv_A 143 MLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRED-------PDIILVGE----------M 205 (356)
T ss_dssp HHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSC-------CSEEEESC----------C
T ss_pred HHHHHCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-------CCEEECCC----------C
T ss_conf 987432566633886267530120154542100025766355999999987359-------98863377----------7
Q ss_pred CHHHHHHH---HHHCCCEEEEEE
Q ss_conf 76999999---974890488520
Q gi|254780791|r 228 NDEMIVRA---IANSSIPIISAI 247 (529)
Q Consensus 228 N~e~lara---I~~~~iPVisgI 247 (529)
.|++.|++ .+.+-..|+|-+
T Consensus 206 RD~eta~~a~~aa~tGHlV~sTl 228 (356)
T 3jvv_A 206 RDLETIRLALTAAETGHLVFGTL 228 (356)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999999997199599986
No 441
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=24.22 E-value=23 Score=12.52 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC----CHHHHHHCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 67999999997410035767775899951688----8444220076999999974890488520
Q gi|254780791|r 188 KEIANAILQLNTLKEGRTCPRPDIIILARGGG----SIEDLWHFNDEMIVRAIANSSIPIISAI 247 (529)
Q Consensus 188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG----S~eDL~~FN~e~laraI~~~~iPVisgI 247 (529)
++|+..|.. ..+|+||-.+.+. +.. |.+.+-|+-..+.||++|-+
T Consensus 88 p~I~d~I~~----------geI~lVINt~d~~~~~~~~~-----D~~~IRR~av~~~IP~~Ttl 136 (178)
T 1vmd_A 88 QQIGAMIAE----------GKIDVLIFFWDPLEPQAHDV-----DVKALIRIATVYNIPVAITR 136 (178)
T ss_dssp HHHHHHHHT----------TSCCEEEEECCSSSCCTTSC-----CHHHHHHHHHHTTCCEESSH
T ss_pred CCHHHHHHC----------CCCCEEEECCCCCCCCCCHH-----HHHHHHHHHHHHCCCEEECH
T ss_conf 529999986----------98218998169977776602-----69999999998497235469
No 442
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=24.11 E-value=18 Score=13.53 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=44.7
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHH----C-CCEEE-EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 528999847842589999998630----5-97589-99721001111036799999999741003576777589995168
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRISC----R-FPLRV-IIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG 218 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~~----r-~p~~~-~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG 218 (529)
..+||| |.+.|||--=++..+.. + ..+-+ .+-|++.-..+| |..--.+.+... .|--+.+|.-
T Consensus 56 ~~~IgI-tG~PGaGKSTLi~~L~~~~~~~~~~vavlavDpss~~sgga---ilgDr~Rm~~l~-------~~~~~~ir~~ 124 (341)
T 2p67_A 56 TLRLGV-TGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGS---ILGDKTRMNDLA-------RAEAAFIRPV 124 (341)
T ss_dssp SEEEEE-EECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC------------------CTTT-------TCTTEEEEEE
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC---CCHHHHHHHHHC-------CCCCEEEECC
T ss_conf 528973-28999989999999999986168860144168866402443---621267898751-------5775354136
Q ss_pred CCHHHHH--HCCHHHHHHHH--HHCCCEEEEEECCCCCCHHHHHHHCCCC--CCCHH
Q ss_conf 8844422--00769999999--7489048852057775258988641237--77214
Q gi|254780791|r 219 GSIEDLW--HFNDEMIVRAI--ANSSIPIISAIGHETDWTLADYAADLRA--PTPTG 269 (529)
Q Consensus 219 GS~eDL~--~FN~e~laraI--~~~~iPVisgIGHE~D~Tl~D~VAD~Ra--~TPTa 269 (529)
++-..|- +-+-.+++... +.+.+=+|--||.--..+-++..||+.. -+|..
T Consensus 125 ~s~~~lgg~~~~~~~~v~~l~~~g~D~iliETVG~gq~e~~v~~~aD~~l~vl~p~~ 181 (341)
T 2p67_A 125 PSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGG 181 (341)
T ss_dssp CC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCEEEEEECCCC
T ss_conf 665444320365688999987559973122102677652124420550356405676
No 443
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=24.06 E-value=23 Score=12.61 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=19.9
Q ss_pred CCCCCCCCEEEEEECCC-HHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 63102652899984784-2589999998630597589997
Q gi|254780791|r 139 NPIPFIPKIIAVITSPT-GAVIRDILQRISCRFPLRVIIF 177 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~-~a~~~D~~~~~~~r~p~~~~~~ 177 (529)
..++..|++|.||-+-. |.=+..++.. +..++.++
T Consensus 185 ~~l~~~pk~vvVIGgG~iG~E~A~~l~~----~G~~Vtli 220 (484)
T 3o0h_A 185 FDLEKLPKSIVIVGGGYIGVEFANIFHG----LGVKTTLL 220 (484)
T ss_dssp GGCSSCCSEEEEECCSHHHHHHHHHHHH----TTCEEEEE
T ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHHH----CCCEEEEE
T ss_conf 3333259869999988999999999997----49889999
No 444
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=23.93 E-value=23 Score=12.48 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC--------CHHHH-HHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 67999999997410035767775899951688--------84442-2007699999997489048852057
Q gi|254780791|r 188 KEIANAILQLNTLKEGRTCPRPDIIILARGGG--------SIEDL-WHFNDEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG--------S~eDL-~~FN~e~laraI~~~~iPVisgIGH 249 (529)
..|.+|.+.+.. .|++|++=|-. ...|| .+=+.++|+++|++..-|+|.-+-.
T Consensus 562 ~~~~~A~~~A~~---------aD~vivvvG~~~~~e~Eg~DR~~l~Lp~~Q~~Li~aV~a~~~~tVvVl~s 623 (845)
T 3abz_A 562 EEIRNAAELAAK---------HDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQS 623 (845)
T ss_dssp HHHHHHHHHHHT---------SSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHHHHHHHHHH---------CCCEEEEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899999998761---------69169971157643313354422245110899999999878998999827
No 445
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=23.79 E-value=23 Score=12.45 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCHHHHHH-CCHHHHHH-HHHHCCCEEEE
Q ss_conf 7758999516888444220-07699999-99748904885
Q gi|254780791|r 208 RPDIIILARGGGSIEDLWH-FNDEMIVR-AIANSSIPIIS 245 (529)
Q Consensus 208 ~~D~iii~RGGGS~eDL~~-FN~e~lar-aI~~~~iPVis 245 (529)
.+|+||+++-|=+. ++. |.+ ++. -+-.+++||+.
T Consensus 119 ~~DLiV~G~~~~~~--~~~~lGs--~~~~v~~~a~~pVLv 154 (156)
T 3fg9_A 119 KPDLLVTGADTEFP--HSKIAGA--IGPRLARKAPISVIV 154 (156)
T ss_dssp CCSEEEEETTCCCT--TSSSCSC--HHHHHHHHCSSEEEE
T ss_pred CCCEEEECCCCCCC--CCCCCCC--HHHHHHHCCCCCEEE
T ss_conf 99899981789986--0000375--999999619999899
No 446
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=23.77 E-value=23 Score=12.45 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=61.6
Q ss_pred CEEEEEECCCHHHHHHHHHHH--HHCCCEEEEEEE-CC-----------CCCCCHHHHHHHHHHHHHHH-------CCCC
Q ss_conf 289998478425899999986--305975899972-10-----------01111036799999999741-------0035
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRI--SCRFPLRVIIFP-VK-----------VQGDECPKEIANAILQLNTL-------KEGR 204 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~--~~r~p~~~~~~p-~~-----------vQG~~a~~~i~~ai~~~~~~-------~~~~ 204 (529)
-+|||+|+........++..+ .+.|+...++.. -. -.|+=.|..+..++...+.- .+..
T Consensus 232 iklaIvTg~~~~~a~~~L~~lgL~~~Fd~~~ivt~ddv~~~~~~~~~~~~~~KP~P~~~~~al~~l~~~~~~~~~~~~~~ 311 (384)
T 1qyi_A 232 FELGIATGRPYTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDN 311 (384)
T ss_dssp CEEEEECSSCHHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTT
T ss_pred CEEEEECCCCHHHHHHHHHHCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 98999889848999999998498544885324314333334234654568899896999999998297057788887615
Q ss_pred CCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEE-CCCCCCHHHHHHHCCCCCCCHHHH
Q ss_conf 7677758999516888444220076999999974890488520-577752589886412377721456
Q gi|254780791|r 205 TCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAI-GHETDWTLADYAADLRAPTPTGAA 271 (529)
Q Consensus 205 ~~~~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgI-GHE~D~Tl~D~VAD~Ra~TPTaAA 271 (529)
....-++++| |=|..|+.+ |++.--..|=|.+|. |.+.-..+...-||.-.++++...
T Consensus 312 ~v~~~evl~V---GDs~~Di~a------Ak~AG~~~IgVltG~~~~~~r~~le~~gAD~Iidsi~dL~ 370 (384)
T 1qyi_A 312 IVNKDDVFIV---GDSLADLLS------AQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELR 370 (384)
T ss_dssp CSCTTTEEEE---ESSHHHHHH------HHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHH
T ss_pred CCCCCEEEEE---CCCHHHHHH------HHHCCCEEEEEECCCCCCCCHHHHHHCCCCEEECCHHHHH
T ss_conf 8996618998---389999999------9985994999905888864477998789999979999999
No 447
>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=23.74 E-value=24 Score=12.45 Aligned_cols=31 Identities=19% Similarity=0.521 Sum_probs=15.9
Q ss_pred CCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEE
Q ss_conf 75899951688844422007699999997489048852
Q gi|254780791|r 209 PDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISA 246 (529)
Q Consensus 209 ~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisg 246 (529)
++.|.++ ||||..++|+ ..+|. | +..||...
T Consensus 403 ~~~i~v~-GG~s~n~~~~---Qi~Ad-v--~~~pV~~~ 433 (511)
T 3hz6_A 403 VGLLKVV-GGGARSEAWL---RMIAD-N--LNVSLLVK 433 (511)
T ss_dssp CCEEEEE-SGGGGCHHHH---HHHHH-H--HTCEEEEC
T ss_pred CCEEEEE-CCHHHHHHHH---HHHHH-H--HCCCEEEC
T ss_conf 8879998-4634579999---99999-8--68985977
No 448
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=23.69 E-value=18 Score=13.48 Aligned_cols=54 Identities=7% Similarity=-0.010 Sum_probs=26.1
Q ss_pred CCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHCCCEEEEEEE-CCCCCCCHHHHHHHHHHHH
Q ss_conf 631026528999847-8425899999986305975899972-1001111036799999999
Q gi|254780791|r 139 NPIPFIPKIIAVITS-PTGAVIRDILQRISCRFPLRVIIFP-VKVQGDECPKEIANAILQL 197 (529)
Q Consensus 139 ~~lP~~p~~i~vits-~~~a~~~D~~~~~~~r~p~~~~~~p-~~vQG~~a~~~i~~ai~~~ 197 (529)
..++.+|+++.||-+ .-|.=+..+++ |++.+|.++. ..+= ..-..++.+.+...
T Consensus 179 ~~l~~~P~~lvIIGgG~IG~E~A~~f~----~lG~~VTii~r~~~L-~~~D~ei~~~l~~~ 234 (488)
T 3dgz_A 179 FWLKESPGKTLVVGASYVALECAGFLT----GIGLDTTVMMRSIPL-RGFDQQMSSLVTEH 234 (488)
T ss_dssp TTCSSCCCSEEEECCSHHHHHHHHHHH----HTTCCEEEEESSCSS-TTSCHHHHHHHHHH
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHH----HCCCEEEEEECCCCC-CCCCHHHHHHHHHH
T ss_conf 222107972999927758888899998----669848999767656-54199999999999
No 449
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.63 E-value=20 Score=13.13 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCCEEEEEEECCCCC-CCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCC
Q ss_conf 4894799999735210-5866814598899999966752884379999971016800
Q gi|254780791|r 59 DNHSRIDAIIWKGTLN-KIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSG 114 (529)
Q Consensus 59 d~~a~i~~~~~~~~~~-~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G 114 (529)
.+.+.+.|.+..+... .+. ..++|..+.-..+..+....+.+.|.|..+.+.-.|
T Consensus 23 G~~~~l~C~v~~~~p~~~v~-W~~~g~~i~~~~~~~~~~~~~~~~L~I~~v~~~D~G 78 (104)
T 2eny_A 23 GESCSFECVLSHESASDPAM-WTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAG 78 (104)
T ss_dssp SCCEEEEEECSSCCCSSCBC-CBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCS
T ss_pred CCEEEEEEEECCCCCCCEEE-EEECCCCCCEEEEEEEECCCCEEEEEECCCCCCCCE
T ss_conf 98399999989787897899-998765442002466860699789997578766899
No 450
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1}
Probab=23.29 E-value=24 Score=12.38 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=27.0
Q ss_pred EEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCC-C-CC-CCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 9999705435688862799987489479999973521-0-58-66814598899999966752884
Q gi|254780791|r 37 VRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTL-N-KI-EFLPEEGIEFLVIGKITTFPGSS 99 (529)
Q Consensus 37 v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~-~-~~-~~~~~~G~~v~~~g~~~~y~~~g 99 (529)
|+|.|.-|.. ..|-=|.+- | +.. =+++..+. . .- .-.+.+|+.|.+.-.- .++|
T Consensus 1 v~G~Vk~f~~--~KGfGFI~~-~-dg~--DvFvH~s~l~~~~~~~~L~~G~~V~F~~~~---~~kG 57 (74)
T 2kcm_A 1 MKGKVVSYLA--AKKYGFIQG-D-DGE--SYFLHFSELLDKKDEGKLVKGSMVHFDPTP---TPKG 57 (74)
T ss_dssp CEEEEEEEET--TTTEEEEEE-T-TSC--EECCCGGGSSCSGGGTTCCTTSEEEEEEEC---TTTS
T ss_pred CEEEEEEEEC--CCCEEEEEC-C-CCC--EEEEEEEHHCCCCCCCCCCCCCEEEEEEEE---CCCC
T ss_conf 9379999979--998738865-9-998--899994052354688636999999999998---9999
No 451
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Porphyromonas gingivalis W83}
Probab=23.25 E-value=18 Score=13.39 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHH-HHCCCCCCCHHHHHHH
Q ss_conf 8852057775258988-6412377721456763
Q gi|254780791|r 243 IISAIGHETDWTLADY-AADLRAPTPTGAAEMA 274 (529)
Q Consensus 243 VisgIGHE~D~Tl~D~-VAD~Ra~TPTaAAEla 274 (529)
.+|--+|.+|+-+.++ |||+|-.|+...|+.+
T Consensus 378 ~vt~~~~~vd~vVTE~Gva~Lrg~s~~era~~l 410 (439)
T 3d3u_A 378 CVTTGRNEVDYVVTEYGVARLRGATLRQRAEAL 410 (439)
T ss_dssp ---CCSTTCSEEEETTEEEECTTCCHHHHHHHH
T ss_pred CEECCCCEEEEEECCCEEEECCCCCHHHHHHHH
T ss_conf 630268843099864678984899999999999
No 452
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=23.13 E-value=24 Score=12.36 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=53.0
Q ss_pred CCCEEEEEECCCHHHHHHH-----HHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEE---
Q ss_conf 6528999847842589999-----9986305-975899972100111103679999999974100357677758999---
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDI-----LQRISCR-FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIIL--- 214 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~-----~~~~~~r-~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii--- 214 (529)
-..|||||.|.==.-+-|- ..++.+. .+.++.++.+ -| +-||--+++.+-..+ +||.+|-
T Consensus 12 ~~~ri~IV~s~~n~~I~~~L~~ga~~~l~~~g~~~~i~~~~V--PG---a~EiP~~~~~l~~~~------~~DaiIaLG~ 80 (156)
T 1c2y_A 12 QSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWV--PG---AYELGVTAQALGKSG------KYHAIVCLGA 80 (156)
T ss_dssp TTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEE--SS---HHHHHHHHHHHHHTT------CCSEEEEEEE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEC--CC---HHHHHHHHHHHHHCC------CCCEEEEEEE
T ss_conf 898899999428789999999999999997599876079984--84---889999999998639------9987999988
Q ss_pred -ECCCCCHHHHHHCCHHHHHHHH----HHCCCEEEEEECC
Q ss_conf -5168884442200769999999----7489048852057
Q gi|254780791|r 215 -ARGGGSIEDLWHFNDEMIVRAI----ANSSIPIISAIGH 249 (529)
Q Consensus 215 -~RGGGS~eDL~~FN~e~laraI----~~~~iPVisgIGH 249 (529)
+||.=.--|+.| ..+++.| ....+||+.||=.
T Consensus 81 VIkGeT~H~e~I~---~~v~~gl~~lsl~~~~PI~~GILt 117 (156)
T 1c2y_A 81 VVKGDTSHYDAVV---NSASSGVLSAGLNSGVPCVFGVLT 117 (156)
T ss_dssp CCCCSSTHHHHHH---HHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred EECCCCCHHHHHH---HHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 8628983899999---999999999855169987998507
No 453
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=23.05 E-value=24 Score=12.34 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=12.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 52899984784258999999863
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDILQRIS 167 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~~~~~~ 167 (529)
..+|| ||.+.|||--=+++.+-
T Consensus 79 ~~rIg-ItG~PGaGKSTLi~~L~ 100 (355)
T 3p32_A 79 AHRVG-ITGVPGVGKSTAIEALG 100 (355)
T ss_dssp SEEEE-EECCTTSSHHHHHHHHH
T ss_pred CEEEE-EECCCCCCHHHHHHHHH
T ss_conf 75997-42899998999999999
No 454
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=22.98 E-value=20 Score=13.12 Aligned_cols=10 Identities=30% Similarity=0.703 Sum_probs=6.1
Q ss_pred CCCEEEEEEE
Q ss_conf 1718999997
Q gi|254780791|r 32 LSHVCVRGEI 41 (529)
Q Consensus 32 ~~~~~v~gEi 41 (529)
-|++++.||.
T Consensus 72 vP~v~~~~~~ 81 (598)
T 2x8g_A 72 VPQMFVRGKF 81 (598)
T ss_dssp SCEEEETTEE
T ss_pred CCEEEECCEE
T ss_conf 7869999988
No 455
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3}
Probab=22.94 E-value=24 Score=12.33 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCHHHH-HHCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 10367999999997410035767775899951-68884442-2007699999997489048852057
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILAR-GGGSIEDL-WHFNDEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R-GGGS~eDL-~~FN~e~laraI~~~~iPVisgIGH 249 (529)
....+|++..+.. .+|+||+++ |-+.+..+ +.=+.+.|++. +++||+. |-|
T Consensus 104 ~~~~~I~~~a~~~----------~~DliVmG~~g~~~~~~~l~GS~~~~vl~~---~~~pVLv-V~~ 156 (170)
T 2dum_A 104 IPWDEIVKVAEEE----------NVSLIILPSRGKLSLSHEFLGSTVMRVLRK---TKKPVLI-IKE 156 (170)
T ss_dssp CHHHHHHHHHHHT----------TCSEEEEESCCCCC--TTCCCHHHHHHHHH---CSSCEEE-ECC
T ss_pred CHHHHHHHHCCCC----------CCCEEEEECCCCCCCCCCEECCHHHHHHHH---CCCCEEE-ECC
T ss_conf 6788520120256----------567899805899966445037599999970---9999999-768
No 456
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=22.93 E-value=21 Score=12.91 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=5.3
Q ss_pred CEEEEEC--CCCCHH
Q ss_conf 5899951--688844
Q gi|254780791|r 210 DIIILAR--GGGSIE 222 (529)
Q Consensus 210 D~iii~R--GGGS~e 222 (529)
|.|-|+. ||||+|
T Consensus 58 D~IEIv~~vgGG~~~ 72 (78)
T 2k5p_A 58 DAVEFLYFMGGGKLE 72 (78)
T ss_dssp BCEEECCCCCCSCCC
T ss_pred CEEEEEEEECCCCCC
T ss_conf 999999483598423
No 457
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=22.67 E-value=24 Score=12.29 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=5.5
Q ss_pred CCCEEEEEEEEE
Q ss_conf 598899999966
Q gi|254780791|r 82 EGIEFLVIGKIT 93 (529)
Q Consensus 82 ~G~~v~~~g~~~ 93 (529)
+|-.+.....|.
T Consensus 183 ~Ga~i~~~t~V~ 194 (561)
T 3da1_A 183 RGAVALNYMKVE 194 (561)
T ss_dssp TTCEEEESEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 898765440366
No 458
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP), isoprenoid biosynthesys; HET: CTP; 1.50A {Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 1h3m_A
Probab=22.67 E-value=24 Score=12.29 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=37.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 6528999847842589999998630597-589997210011110367999999997410035767775899951688844
Q gi|254780791|r 144 IPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 144 ~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
....|-|+++.....+ .......++ +.+ .-+|.....++..|+..++ +.|.|++.-|-
T Consensus 50 ~i~~IiVv~~~~~~~~---~~~~~~~~~~i~~-----~~~~~~~~~sv~~~~~~~~---------d~~~vl~~~~~---- 108 (236)
T 1i52_A 50 RVKRVVIAISPGDSRF---AQLPLANHPQITV-----VDGGDERADSVLAGLKAAG---------DAQWVLVHDAA---- 108 (236)
T ss_dssp TEEEEEEEECTTCCSG---GGSGGGGCTTEEE-----EECCSSHHHHHHHHHHTST---------TCSEEEECCTT----
T ss_pred CCCEEEEECCHHHHHH---HHHHHHCCCCCEE-----ECCCCCCHHHHHHHHHHCC---------CCCEEEECCCC----
T ss_conf 9777987227257888---8876403764315-----4388632089999998648---------99889972676----
Q ss_pred HHHHC-CHHHHHHHHHH
Q ss_conf 42200-76999999974
Q gi|254780791|r 223 DLWHF-NDEMIVRAIAN 238 (529)
Q Consensus 223 DL~~F-N~e~laraI~~ 238 (529)
++| +.+.+.+.+..
T Consensus 109 --~p~i~~~~~~~l~~~ 123 (236)
T 1i52_A 109 --RPCLHQDDLARLLAL 123 (236)
T ss_dssp --CTTCCHHHHHHHHGG
T ss_pred --CCCCCHHHHHHHHHH
T ss_conf --867999999999999
No 459
>6ldh_A M4 APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.00A {Squalus acanthias} SCOP: c.2.1.5 d.162.1.1 PDB: 8ldh_A* 1ldm_A* 9ldt_A* 9ldb_A* 1i10_A* 3ldh_A* 3h3f_A* 1t2f_A* 1i0z_A* 5ldh_A* 1v6a_A*
Probab=22.62 E-value=25 Score=12.28 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=63.2
Q ss_pred HCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC-CCEEEEEEECCCCC-CCHHHHHHHHHHHHH-----HHCCC
Q ss_conf 122610016310265289998478425899999986305-97589997210011-110367999999997-----41003
Q gi|254780791|r 131 GLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCR-FPLRVIIFPVKVQG-DECPKEIANAILQLN-----TLKEG 203 (529)
Q Consensus 131 Glfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r-~p~~~~~~p~~vQG-~~a~~~i~~ai~~~~-----~~~~~ 203 (529)
+|........-|.-+.||+||- . |.+=.-+...+..+ ..-++.||.....- ++-+.++..+.-... ..++.
T Consensus 7 ~~~~~~~~~~~~~~~~KI~IiG-a-G~VG~~~a~~l~~~~l~~el~L~D~~~~~a~g~a~DL~h~~~~~~~~~~~~~~d~ 84 (330)
T 6ldh_A 7 KLIGHLATSQEPRSYNKITVVG-V-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSGKDY 84 (330)
T ss_dssp HHCCCCSCCCCCCCSSEEEEEC-C-SHHHHHHHHHHHTTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSCEEEESSG
T ss_pred HHHHHHCCCCCCCCCCEEEEEC-C-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCCCH
T ss_conf 9976412656786798799989-8-9899999999982799887999918998159999998757655799849848867
Q ss_pred CCCCCCCEEEEE-----CCCCCHHHHHHCCHH---HHHHHHHH-CCCEEEEEECCCCCC
Q ss_conf 576777589995-----168884442200769---99999974-890488520577752
Q gi|254780791|r 204 RTCPRPDIIILA-----RGGGSIEDLWHFNDE---MIVRAIAN-SSIPIISAIGHETDW 253 (529)
Q Consensus 204 ~~~~~~D~iii~-----RGGGS~eDL~~FN~e---~laraI~~-~~iPVisgIGHE~D~ 253 (529)
......|+|||+ ..|-+..||..-|-+ .++.+|.. +|-.+|-=|+--.|+
T Consensus 85 ~~~~~advvvi~ag~~rkpg~~R~dl~~~Na~i~~~~~~~i~~~~p~~~vivvsNPvd~ 143 (330)
T 6ldh_A 85 SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDV 143 (330)
T ss_dssp GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 88467758997168889999987899886799999999877622997299981687137
No 460
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=22.53 E-value=25 Score=12.26 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=33.5
Q ss_pred CCEEEEECCCCC----HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHH
Q ss_conf 758999516888----4442200769999999748904885205777525898864123777214
Q gi|254780791|r 209 PDIIILARGGGS----IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTG 269 (529)
Q Consensus 209 ~D~iii~RGGGS----~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTa 269 (529)
.|.|+|+||-=+ +|+| ++--..+.+..-....|||+|-- ++| +=..-|+||-
T Consensus 272 sDgimIaRGDLg~ei~~e~v-p~~Qk~Ii~~~~~~~kpvivATq------mLe--SM~~~~~PTR 327 (511)
T 3gg8_A 272 ADGIMIARGDLGMEIPPEKV-FLAQKMMIAKCNVVGKPVITATQ------MLE--SMIKNPRPTR 327 (511)
T ss_dssp CSCEEEEHHHHHHHSCHHHH-HHHHHHHHHHHHHTTCCEEEESS------SSG--GGGTCSSCCH
T ss_pred CCEEEEECCCCCCCCCHHHH-HHHHHHHHHHHHHCCCEEEECHH------HHH--HHHHCCCCCC
T ss_conf 87899976763143898895-89999999999980992998207------799--9974897740
No 461
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=22.41 E-value=25 Score=12.25 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=42.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHH
Q ss_conf 28999847842589999998630597589997210011110367999999997410035767775899951688844422
Q gi|254780791|r 146 KIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLW 225 (529)
Q Consensus 146 ~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~ 225 (529)
+||-||- +-..+.++++..=+++++++..... | -+|++.+... .||+||+=- .|=
T Consensus 2 ~rILiVD--Dd~~~~~~l~~~L~~~g~~v~~a~~---g-------~~al~~~~~~-------~~dlvilD~------~mP 56 (116)
T 3a10_A 2 KRILVVD--DEPNIRELLKEELQEEGYEIDTAEN---G-------EEALKKFFSG-------NYDLVILDI------EMP 56 (116)
T ss_dssp CEEEEEC--SCHHHHHHHHHHHHHTTCEEEEESS---H-------HHHHHHHHHS-------CCSEEEECS------CCS
T ss_pred CEEEEEE--CCHHHHHHHHHHHHHCCCEEEEECC---H-------HHHHHHHHHC-------CCCEEEEEC------CCC
T ss_conf 8899992--9999999999999987999999899---9-------9999999847-------999899836------889
Q ss_pred HCCHHHHHHHHHH--CCCEEEEEECCC
Q ss_conf 0076999999974--890488520577
Q gi|254780791|r 226 HFNDEMIVRAIAN--SSIPIISAIGHE 250 (529)
Q Consensus 226 ~FN~e~laraI~~--~~iPVisgIGHE 250 (529)
.-|-.++++.|-+ ..+|||---||.
T Consensus 57 ~~~G~e~~~~ir~~~~~~pii~lt~~~ 83 (116)
T 3a10_A 57 GISGLEVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp SSCHHHHHHHHHHHCTTCCEEEEESCG
T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 999999999998439989799998978
No 462
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor}
Probab=22.35 E-value=25 Score=12.24 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=5.4
Q ss_pred CEEEEEECCC
Q ss_conf 2899984784
Q gi|254780791|r 146 KIIAVITSPT 155 (529)
Q Consensus 146 ~~i~vits~~ 155 (529)
.+|-|+|+..
T Consensus 43 ~~iiV~t~~~ 52 (252)
T 3oam_A 43 DRVIIATDDE 52 (252)
T ss_dssp SEEEEEESCH
T ss_pred CEEEEEECCC
T ss_conf 8399995770
No 463
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=22.30 E-value=25 Score=12.23 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=22.0
Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 6310265289998478425899999986305975899972
Q gi|254780791|r 139 NPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFP 178 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p 178 (529)
..++..|++|+||-+-..+. ++-..++ +++.+|.++.
T Consensus 164 ~~l~~~pk~vvVIGgG~ig~--E~A~~l~-~~G~~Vtlve 200 (455)
T 1ebd_A 164 LNLGEVPKSLVVIGGGYIGI--ELGTAYA-NFGTKVTILE 200 (455)
T ss_dssp HTCSSCCSEEEEECCSHHHH--HHHHHHH-HTTCEEEEEE
T ss_pred HCCCCCCCEEEEECCCHHHH--HHHHHHH-HCCCEEEEEE
T ss_conf 18150698699999889999--9999999-7699799998
No 464
>2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=22.29 E-value=25 Score=12.23 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=18.8
Q ss_pred CCCCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEE
Q ss_conf 631026528999847842-589999998630597589997
Q gi|254780791|r 139 NPIPFIPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIF 177 (529)
Q Consensus 139 ~~lP~~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~ 177 (529)
..++..|+++.||-+-.. .-+..+++ ++..+|.++
T Consensus 198 ~~l~~~p~~vvIIGgG~ig~E~A~~l~----~lG~~Vtii 233 (513)
T 2zzc_A 198 FSLPYCPGKTLVVGASYVALECAGFLA----GIGLDVTVM 233 (513)
T ss_dssp TTCSSCCCSEEEECCSHHHHHHHHHHH----HTTCCEEEE
T ss_pred HCCCCCCCEEEEECCCHHHHHHHHHHH----HHCCEEEEE
T ss_conf 371327987999898899999999999----729869999
No 465
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=22.22 E-value=25 Score=12.22 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=29.3
Q ss_pred HHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCHHHHHHHHHHHH
Q ss_conf 65401226100163102652899984784258999999863059758999721001-111036799999999
Q gi|254780791|r 127 LLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQ-GDECPKEIANAILQL 197 (529)
Q Consensus 127 L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQ-G~~a~~~i~~ai~~~ 197 (529)
+..+++|+ ++..|++|.||-+-..+ =++-..+++ ++.+|.++...-+ -.....++...+...
T Consensus 154 ~t~~~~~~------l~~~pk~v~ViGgG~ig--~E~A~~l~~-~G~~Vtli~r~~~ll~~~d~e~~~~l~~~ 216 (463)
T 2r9z_A 154 ITSDGFFA------LQQQPKRVAIIGAGYIG--IELAGLLRS-FGSEVTVVALEDRLLFQFDPLLSATLAEN 216 (463)
T ss_dssp BCHHHHHH------CSSCCSEEEEECCSHHH--HHHHHHHHH-TTCEEEEECSSSSSSTTSCHHHHHHHHHH
T ss_pred CCHHHHHC------CCCCCCEEEEECCCHHH--HHHHHHHHH-CCCEEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 72678523------44279989999978999--999999997-79999999850433454442001233332
No 466
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=22.19 E-value=25 Score=12.21 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=8.0
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 88889862299999999999
Q gi|254780791|r 8 NSLDHPEYSVSELSYHLKHI 27 (529)
Q Consensus 8 ~~~~~~~~svs~l~~~i~~~ 27 (529)
.-.+...||..|+..-+...
T Consensus 9 hll~i~dls~~ei~~ll~~A 28 (328)
T 3grf_A 9 HLLTISALCPKELAYLIDRA 28 (328)
T ss_dssp CBSSGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHHH
T ss_conf 71514319999999999999
No 467
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus VF5} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=22.13 E-value=18 Score=13.38 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=39.9
Q ss_pred CCEE-EEEECC--CHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 5289-998478--4258999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 145 PKII-AVITSP--TGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 145 p~~i-~vits~--~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
+.+| +|-||. .+.=-.+|+..++++.++++.+..-.-. +.=+..++. .... ..-+.+|+==||||.
T Consensus 82 v~~i~~vATsA~R~A~N~~~~~~~i~~~~Gi~i~IIsg~eE----A~l~~~gv~--~~~~-----~~~~~lv~DIGGGSt 150 (315)
T 1t6c_A 82 VERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVITPEQE----GRYAYLAVA--YSLK-----PEGEVCVVDQGGGST 150 (315)
T ss_dssp CSEEEEEECHHHHTSTTHHHHHHHHHHHTCCCEEECCHHHH----HHHHHHHHH--HHTC-----CCSEEEEEEEETTEE
T ss_pred CCCEEEEEHHHHHHCCCHHHHHHHHHHHHCCEEEEECHHHH----HHHHHHCCC--CCCC-----CCCCEEEEEECCCCE
T ss_conf 46199970299884756659999999996985899748999----998741110--1357-----888879997079847
Q ss_pred HHHHHCCH
Q ss_conf 44220076
Q gi|254780791|r 222 EDLWHFND 229 (529)
Q Consensus 222 eDL~~FN~ 229 (529)
| |-.|++
T Consensus 151 E-l~~~~~ 157 (315)
T 1t6c_A 151 E-YVFGKG 157 (315)
T ss_dssp E-EEEEET
T ss_pred E-EEEEEC
T ss_conf 8-999651
No 468
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=22.08 E-value=25 Score=12.20 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH
Q ss_conf 8425899999986305975899972100-111103679999999974100357677758999516888444220076999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI 232 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l 232 (529)
++...+.++...+.+.-++.+.+|..+. -|-.=..+.+..|... +.++-|-=..|... .+
T Consensus 113 ~~~~~~~~~~~~ia~~~~~pi~iYn~P~~~g~~l~~~~l~~L~~~-----------~~v~giK~~~~~~~--------~~ 173 (293)
T 1f6k_A 113 FSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKN-----------PKVLGVKFTAGDFY--------LL 173 (293)
T ss_dssp CCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHTS-----------TTEEEEEECSCCHH--------HH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH-----------CCCEEEEECCCCHH--------HH
T ss_conf 241999999999850588627886054101788868999999863-----------58518996788699--------99
Q ss_pred HHHHHHCC-CEEEEEECCCCCCHHHHHH
Q ss_conf 99997489-0488520577752589886
Q gi|254780791|r 233 VRAIANSS-IPIISAIGHETDWTLADYA 259 (529)
Q Consensus 233 araI~~~~-iPVisgIGHE~D~Tl~D~V 259 (529)
.+....++ .-|++| + |.++.+..
T Consensus 174 ~~~~~~~~~~~v~~g--~--~~~~~~~~ 197 (293)
T 1f6k_A 174 ERLKKAYPNHLIWAG--F--DEMMLPAA 197 (293)
T ss_dssp HHHHHHCTTSEEEEC--C--GGGHHHHH
T ss_pred HHHHHHCCCEEEEEC--C--HHHHHHHH
T ss_conf 999984898489758--5--78899999
No 469
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=22.01 E-value=25 Score=12.18 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 7758999516888444220076999999974890488520577
Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE 250 (529)
Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE 250 (529)
.++.|+++ ||||..+||+ .+.-.|+. .||...-..|
T Consensus 404 ~~~~i~~~-GG~s~s~~~~----Qi~Adv~g--~pV~~~~~~e 439 (501)
T 3g25_A 404 DVQSLRVD-GGAVKNNFIM----QFQADIVN--TSVERPEIQE 439 (501)
T ss_dssp CCSEEEEE-SGGGGCHHHH----HHHHHHHT--SEEEEESCCC
T ss_pred CCCEEEEE-CCCHHCHHHH----HHHHHHHC--CEEEECCCCC
T ss_conf 98889998-9602389999----99999979--8579679885
No 470
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, glycerol metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis KOD1}
Probab=21.98 E-value=25 Score=12.18 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCHHHHHHCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 7758999516888444220076999999974890488520577
Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHE 250 (529)
Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~e~laraI~~~~iPVisgIGHE 250 (529)
.++-|+++ ||||..++|+ .+.-.|.. .||+..-.+|
T Consensus 393 ~~~~i~~~-GGga~n~~~~----Qi~Adv~g--~pV~~~~~~e 428 (497)
T 2zf5_O 393 QIKELRVD-GGATANDFLM----QFQADILN--RKVIRPVVKE 428 (497)
T ss_dssp CCCCEEEE-SGGGGCHHHH----HHHHHHHT--SCEEEESCSC
T ss_pred CCCEEEEE-CCCHHCHHHH----HHHHHHHC--CCEEECCCCC
T ss_conf 98769996-5803468999----99999979--9059779886
No 471
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=21.94 E-value=25 Score=12.17 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCEEEEEECCCHHHHHHH-----HHHHHHC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE----
Q ss_conf 528999847842589999-----9986305-97-589997210011110367999999997410035767775899----
Q gi|254780791|r 145 PKIIAVITSPTGAVIRDI-----LQRISCR-FP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIII---- 213 (529)
Q Consensus 145 p~~i~vits~~~a~~~D~-----~~~~~~r-~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~ii---- 213 (529)
..||+||.|.==.-+-|= +..+.+. .. .++.++.++ |. -||--+++.+-.... ....+||.+|
T Consensus 16 ~~rI~IV~s~~n~~I~~~Ll~ga~~~L~~~g~~~~~i~~~~VP--Ga---~EiP~~~k~l~~~~~-~~~~~~D~vIaLG~ 89 (168)
T 1ejb_A 16 KIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVP--GS---YELPWGTKRFVDRQA-KLGKPLDVVIPIGV 89 (168)
T ss_dssp TCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECS--SG---GGHHHHHHHHHHHHH-HTTCCCSEEEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC--CH---HHHHHHHHHHHHHHH-HCCCCCCEEEEEEE
T ss_conf 9989999721888999999999999999859982246999778--28---888999999999755-20677565998888
Q ss_pred EECCCCCHHHHHHCC-HHHHHHHHHHCCCEEEEEEC
Q ss_conf 951688844422007-69999999748904885205
Q gi|254780791|r 214 LARGGGSIEDLWHFN-DEMIVRAIANSSIPIISAIG 248 (529)
Q Consensus 214 i~RGGGS~eDL~~FN-~e~laraI~~~~iPVisgIG 248 (529)
|+||.=.--|+.|=. ...|.+.-.+..+||+.||=
T Consensus 90 VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GVL 125 (168)
T 1ejb_A 90 LIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLL 125 (168)
T ss_dssp EECCSSSHHHHHHHHHHHHHHHHHHHHTSCBCCEEE
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 864888278899999999999996047982799855
No 472
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=21.88 E-value=25 Score=12.16 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 2299999999999740017189999
Q gi|254780791|r 15 YSVSELSYHLKHIVESNLSHVCVRG 39 (529)
Q Consensus 15 ~svs~l~~~i~~~l~~~~~~~~v~g 39 (529)
=|+.|+...|+-.-+..+ .|.++|
T Consensus 43 ~s~~dV~~~v~~A~~~~~-~v~~rg 66 (561)
T 2i0k_A 43 KTPQDVVRLANWAHEHDY-KIRPRG 66 (561)
T ss_dssp SSHHHHHHHHHHHHHHTC-EEEEEC
T ss_pred CCHHHHHHHHHHHHHCCC-EEEEEC
T ss_conf 999999999999998798-599988
No 473
>3djm_A Uncharacterized protein DUF427; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.51A {Rhodobacter sphaeroides 2}
Probab=21.87 E-value=25 Score=12.16 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=28.5
Q ss_pred CCCC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCC
Q ss_conf 8886-27999874894799999735210586681459889999996675288
Q gi|254780791|r 48 HSSG-HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGS 98 (529)
Q Consensus 48 ~~sG-H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~ 98 (529)
+-.| --||+|.-....+.-+.|+...-.-.+.+ +.|.+.||+.+
T Consensus 66 p~KG~A~Y~~v~~~~~~~~~aaW~Y~~P~~~~~~-------i~g~vAFyp~~ 110 (116)
T 3djm_A 66 PLKGEASYYSIVGASGTLKDAAWSYESPKEGLEA-------IAGYLAFAPDC 110 (116)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEEESSCCTTCGG-------GTTCBEECTTT
T ss_pred CCCCCEEEEEEECCCCEECCEEEECCCCCHHHHH-------HCCCEEECCCE
T ss_conf 9880089999983992835679989998777896-------58849884776
No 474
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=21.86 E-value=25 Score=12.16 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=23.2
Q ss_pred HCCCCCCCCCCCCCCCEEEEEECCC-HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 1226100163102652899984784-25899999986305975899972
Q gi|254780791|r 131 GLFSDQHKNPIPFIPKIIAVITSPT-GAVIRDILQRISCRFPLRVIIFP 178 (529)
Q Consensus 131 Glfd~~~k~~lP~~p~~i~vits~~-~a~~~D~~~~~~~r~p~~~~~~p 178 (529)
++|+...-..++.+|+++.||-+-. |.=+..+++ ++..+|.|+.
T Consensus 166 ~v~t~~~~~~~~~~pk~vvVvGgG~ig~E~A~~l~----~~G~~Vtlie 210 (476)
T 3lad_A 166 VIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWA----RLGAEVTVLE 210 (476)
T ss_dssp SEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHH----HTTCEEEEEE
T ss_pred EEEECHHHHCCCCCCCCEEEECCCHHHHHHHHHHH----HCCCEEEEEE
T ss_conf 59810576372006981499788799999999999----6599799998
No 475
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural genomics, PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=21.82 E-value=21 Score=12.87 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=15.3
Q ss_pred HHHHHHHHHCCCE-EEEEEECCCC
Q ss_conf 9999986305975-8999721001
Q gi|254780791|r 160 RDILQRISCRFPL-RVIIFPVKVQ 182 (529)
Q Consensus 160 ~D~~~~~~~r~p~-~~~~~p~~vQ 182 (529)
-|.-+.|+++|++ ++++.|+...
T Consensus 10 ~eLe~~L~~~fgLk~~~Vvp~~~~ 33 (264)
T 2r5f_A 10 LELETRLQKMYGIRQVIVVEATEP 33 (264)
T ss_dssp HHHHHHHHHHHTCSEEEEECCSST
T ss_pred HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 999999999839998999689999
No 476
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding domain, cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=21.80 E-value=25 Score=12.15 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=53.8
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC
Q ss_conf 026528999847842589999998630597-5899972100111103679999999974100357677758999516888
Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFP-LRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGS 220 (529)
Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p-~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS 220 (529)
+.-.-|||+..+...-.+-+++..++.+|| +++.+... ....+.+.+.. ..+|+.|+.. .
T Consensus 12 ~~G~lrIg~~~~~a~~~Lp~~l~~f~~~~P~i~l~i~~~------~~~~l~~~L~~----------g~~D~ai~~~-~-- 72 (228)
T 2fyi_A 12 TSGVLTIATTHTQARYSLPEVIKAFRELFPEVRLELIQG------TPQEIATLLQN----------GEADIGIASE-R-- 72 (228)
T ss_dssp CCEEEEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEEC------CHHHHHHHHHH----------TSCSEEEESS-S--
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEC------CCHHHHHHHHC----------CCCCEEEEEC-C--
T ss_conf 971799997588999999999999999889948999967------65999999866----------8833233311-2--
Q ss_pred HHHHHHCCHHHHHHHHHHCCCEEEEEECCC----CCCHHHHHH
Q ss_conf 444220076999999974890488520577----752589886
Q gi|254780791|r 221 IEDLWHFNDEMIVRAIANSSIPIISAIGHE----TDWTLADYA 259 (529)
Q Consensus 221 ~eDL~~FN~e~laraI~~~~iPVisgIGHE----~D~Tl~D~V 259 (529)
..+.. +-..+.++..++-++++-+|. ...+..|+.
T Consensus 73 ~~~~~----~~~~~~l~~~~~~~v~~~~~~~~~~~~i~~~dL~ 111 (228)
T 2fyi_A 73 LSNDP----QLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIA 111 (228)
T ss_dssp STTCT----TEEEEEEEEECEEEEEETTCGGGTSSSCCHHHHT
T ss_pred CCCCC----CCEEEEEEECCCCEECCCCCCCCCCCCCCHHHHH
T ss_conf 35686----5336773203430113564200034444478872
No 477
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=21.78 E-value=25 Score=12.15 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=50.9
Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 02652899984784258999999863059758999721001111036799999999741003576777589995168884
Q gi|254780791|r 142 PFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 142 P~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
|.-.-||-||- +-..+.+++...=+..++.+.... +.-.|++.+... .||+|++-
T Consensus 15 p~~~mrILvVE--Dd~~~~~~l~~~L~~~G~~v~~a~----------~g~~al~~l~~~-------~~DlviLp------ 69 (137)
T 2pln_A 15 PRGSMRVLLIE--KNSVLGGEIEKGLNVKGFMADVTE----------SLEDGEYLMDIR-------NYDLVMVS------ 69 (137)
T ss_dssp CTTCSEEEEEC--SCHHHHHHHHHHHHHTTCEEEEES----------CHHHHHHHHHHS-------CCSEEEEC------
T ss_pred CCCCCEEEEEE--CCHHHHHHHHHHHHHCCCEEEEEC----------CHHHHHHHHHCC-------CCCEEEEE------
T ss_conf 98888899995--999999999999998899999989----------999999999728-------99999982------
Q ss_pred HHHHHCCHHHHHHHHHH--CCCEEEEEECCCCCCHHH
Q ss_conf 44220076999999974--890488520577752589
Q gi|254780791|r 222 EDLWHFNDEMIVRAIAN--SSIPIISAIGHETDWTLA 256 (529)
Q Consensus 222 eDL~~FN~e~laraI~~--~~iPVisgIGHE~D~Tl~ 256 (529)
| .|-.++++.|-+ ..+|||---||..+.+..
T Consensus 70 -~---~~G~ell~~ir~~~~~~piiilT~~~~~~~~~ 102 (137)
T 2pln_A 70 -D---KNALSFVSRIKEKHSSIVVLVSSDNPTSEEEV 102 (137)
T ss_dssp -S---TTHHHHHHHHHHHSTTSEEEEEESSCCHHHHH
T ss_pred -C---CCCHHHHHHHHHCCCCCCEEEEECCCCHHHHH
T ss_conf -7---87637999999628899759996489999999
No 478
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=21.77 E-value=25 Score=12.15 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=6.1
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 4598899999966
Q gi|254780791|r 81 EEGIEFLVIGKIT 93 (529)
Q Consensus 81 ~~G~~v~~~g~~~ 93 (529)
++|-.+.....|.
T Consensus 161 ~~G~~~~~~~~V~ 173 (501)
T 2qcu_A 161 RKGGEVLTRTRAT 173 (501)
T ss_dssp HTTCEEECSEEEE
T ss_pred HCCCEEECCCEEE
T ss_conf 7697140043355
No 479
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2
Probab=21.73 E-value=25 Score=12.14 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 80079999999999765401226100163102652899984784258999999863059758999721001111036799
Q gi|254780791|r 112 GSGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIA 191 (529)
Q Consensus 112 g~G~l~~~~e~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~ 191 (529)
|+|. .+-++|.++|.- -++++.+...+.+....+.+.++.++..+++=|--.+....++
T Consensus 32 GIG~------aiA~~la~~Ga~---------------V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~ 90 (267)
T 1vl8_A 32 GLGF------GIAQGLAEAGCS---------------VVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLL 90 (267)
T ss_dssp HHHH------HHHHHHHHTTCE---------------EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHH
T ss_pred HHHH------HHHHHHHHCCCE---------------EEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
T ss_conf 8999------999999987998---------------9999798899999999999970995799993489999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHH
Q ss_conf 999999741003576777589995168884442200769999999
Q gi|254780791|r 192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 (529)
Q Consensus 192 ~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~laraI 236 (529)
+.+.. . ...+|++|-.=|.+...+++-+++|..-+.+
T Consensus 91 ~~~~~--~------~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~ 127 (267)
T 1vl8_A 91 EAVKE--K------FGKLDTVVNAAGINRRHPAEEFPLDEFRQVI 127 (267)
T ss_dssp HHHHH--H------HSCCCEEEECCCCCCCCCGGGCCHHHHHHHH
T ss_pred HHHHH--H------CCCCCEEEECCCCCCCCCHHHCCHHHHHHHH
T ss_conf 99999--7------5999899989998999990459999999999
No 480
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=21.69 E-value=25 Score=12.13 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCH----HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHH
Q ss_conf 7589995168884----442200769999999748904885205777525898864123777214
Q gi|254780791|r 209 PDIIILARGGGSI----EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTG 269 (529)
Q Consensus 209 ~D~iii~RGGGS~----eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTa 269 (529)
.|.|+|+||-=+. |+|- .-...+++..-....|||+|-- ++| +=..-|.||-
T Consensus 257 sDgimiaRGDLg~e~~~e~vp-~~Qk~ii~~~~~~~kpvi~ATq------mLe--SM~~~p~PTR 312 (500)
T 1a3w_A 257 TDGVMVARGDLGIEIPAPEVL-AVQKKLIAKSNLAGKPVICATQ------MLE--SMTYNPRPTR 312 (500)
T ss_dssp SSEEEECHHHHHHHTTGGGHH-HHHHHHHHHHHHHTCCEEECSS------TTG--GGGSCSSCCH
T ss_pred CCEEEEECCCCCCCCCHHHHH-HHHHHHHHHHHHCCCEEEEEHH------HHH--HHHHCCCCCH
T ss_conf 766999888631328977725-9999999999983992999215------789--8863887732
No 481
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728}
Probab=21.63 E-value=22 Score=12.76 Aligned_cols=11 Identities=0% Similarity=0.012 Sum_probs=4.0
Q ss_pred CCEEEEEEEEE
Q ss_conf 84379999971
Q gi|254780791|r 98 SSKYQIIIESL 108 (529)
Q Consensus 98 ~g~~ql~v~~i 108 (529)
...+.+..+-+
T Consensus 144 ~~~~~~~a~~v 154 (397)
T 3cgv_A 144 NEIVDVRAKMV 154 (397)
T ss_dssp TEEEEEEEEEE
T ss_pred CCCEEEEEEEE
T ss_conf 66348985169
No 482
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A
Probab=21.58 E-value=26 Score=12.12 Aligned_cols=78 Identities=12% Similarity=0.279 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHH
Q ss_conf 8425899999986305975899972100-111103679999999974100357677758999516888444220076999
Q gi|254780791|r 154 PTGAVIRDILQRISCRFPLRVIIFPVKV-QGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMI 232 (529)
Q Consensus 154 ~~~a~~~D~~~~~~~r~p~~~~~~p~~v-QG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~FN~e~l 232 (529)
++-.++.++.+.+.+.-++.|++|..+. -|-.-..+.+..+..- -+.++-|==..|+..++. .+
T Consensus 140 ~~~~~~~~~f~~i~~a~~~Pi~iYn~P~~~g~~is~~~l~~l~~~----------~pni~giK~~~~d~~~~~-----~~ 204 (343)
T 2v9d_A 140 VSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADS----------RSNIIGIKDTIDSVAHLR-----SM 204 (343)
T ss_dssp CCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHH----------CTTEEEEEECCSCHHHHH-----HH
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH----------HCCEEEEECCHHHHHHHH-----HH
T ss_conf 550889999999998569968999667303330467799999875----------337008975045379999-----99
Q ss_pred HHHHHH--CCCEEEEE
Q ss_conf 999974--89048852
Q gi|254780791|r 233 VRAIAN--SSIPIISA 246 (529)
Q Consensus 233 araI~~--~~iPVisg 246 (529)
.+.+-. -.+-|++|
T Consensus 205 ~~~~~~~~~~~~i~~G 220 (343)
T 2v9d_A 205 IHTVKGAHPHFTVLCG 220 (343)
T ss_dssp HHHHHHHCTTCEEEES
T ss_pred HHHHHCCCCCCCCCCC
T ss_conf 9985235865350037
No 483
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus}
Probab=21.46 E-value=26 Score=12.10 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CCHHHH-HHCCHHHHHHHHHHCCCEEEE
Q ss_conf 001111036799999999741003576777589995168-884442-200769999999748904885
Q gi|254780791|r 180 KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG-GSIEDL-WHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 180 ~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGG-GS~eDL-~~FN~e~laraI~~~~iPVis 245 (529)
.+-|...+..|++..+.. .+|+||+++-| +.+.++ +.=..+.| +..++.||+.
T Consensus 99 ~v~~g~~~~~I~~~a~~~----------~adLIV~G~~~~~~~~~~~lGS~~~~v---lr~a~~pVlv 153 (155)
T 3dlo_A 99 LVRGKEPPDDIVDFADEV----------DAIAIVIGIRKRSPTGKLIFGSVARDV---ILKANKPVIC 153 (155)
T ss_dssp EESSSCHHHHHHHHHHHT----------TCSEEEEECCEECTTSCEECCHHHHHH---HHHCSSCEEE
T ss_pred EEECCCHHHHHHHHHHHC----------CCCEEEECCCCCCCCCCCCCCCHHHHH---HHCCCCCEEE
T ss_conf 995789899999999872----------998998568999975446057699999---8578999999
No 484
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=21.42 E-value=26 Score=12.09 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC---CCCCHHHHHHCCHHHHHHHHHHCCCEEEEEEC-CCCCCHHHHHH
Q ss_conf 10367999999997410035767775899951---68884442200769999999748904885205-77752589886
Q gi|254780791|r 185 ECPKEIANAILQLNTLKEGRTCPRPDIIILAR---GGGSIEDLWHFNDEMIVRAIANSSIPIISAIG-HETDWTLADYA 259 (529)
Q Consensus 185 ~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R---GGGS~eDL~~FN~e~laraI~~~~iPVisgIG-HE~D~Tl~D~V 259 (529)
++...+.++|+.+++.. .++|+||+.= -.|+.+..-.|. +.|.+.....++|++.-.| |+....+-.+.
T Consensus 48 ~~~~~l~~~l~~i~~~~-----~~pD~vvitGDl~~~g~~~~y~~~~-~~l~~~~~~~~~pv~~v~GNHD~~~~~~~~~ 120 (330)
T 3ib7_A 48 DADDRLGELLEQLNQSG-----LRPDAIVFTGDLADKGEPAAYRKLR-GLVEPFAAQLGAELVWVMGNHDDRAELRKFL 120 (330)
T ss_dssp CHHHHHHHHHHHHHHHT-----CCCSEEEECSCCBTTCCHHHHHHHH-HHHHHHHHHHTCEEEECCCTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCC-----CCCCEEEECCCCCCCCCHHHHHHHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
T ss_conf 99999999999998229-----8999999898778999999999999-9999987524997799578776445554431
No 485
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=21.29 E-value=26 Score=12.07 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=17.1
Q ss_pred CCEEEE-ECCCCCHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 758999-5168884442200769999999748904885
Q gi|254780791|r 209 PDIIIL-ARGGGSIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 209 ~D~iii-~RGGGS~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+|.||| +=|.|..-+=| -..+.+++.+..|||+.
T Consensus 240 ~~GiVl~g~G~G~~~~~~---~~~l~~~~~~~gi~VV~ 274 (331)
T 1agx_A 240 VKAIIHAGTGNGSMANYL---VPEVRKLHDEQGLQIVR 274 (331)
T ss_dssp CSEEEEEEBTTTBCCTTH---HHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEECCCCCCHHH---HHHHHHHHHHCCCEEEE
T ss_conf 979999532577645579---99999998746918999
No 486
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A*
Probab=21.27 E-value=26 Score=12.07 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH--------HHHHHCC
Q ss_conf 58999999863059758999721001111036799999999741003576777589995168884--------4422007
Q gi|254780791|r 157 AVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI--------EDLWHFN 228 (529)
Q Consensus 157 a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~--------eDL~~FN 228 (529)
.|...+..+++ .+|=+|.|. .-+.-..|..||..--... .++.-|++. | |+. .+...|+
T Consensus 103 ~a~~~i~~~~~-~~~~~vtil-----a~GPLTNiA~al~~~P~~~-----~~i~~iviM-G-G~~~~gn~~~~aEfN~~~ 169 (313)
T 1q8f_A 103 HAVKYIIDTLM-ASDGDITLV-----PVGPLSNIAVAMRMQPAIL-----PKIREIVLM-G-GAYGTGNFTPSAEFNIFA 169 (313)
T ss_dssp CHHHHHHHHHH-HSCSCEEEE-----ECSCSHHHHHHHHHCGGGG-----GGEEEEEEE-C-CCSSCCSSSSSCCHHHHT
T ss_pred HHHHHHHHHHH-HCCCCEEEE-----ECCCHHHHHHHHHHCCHHH-----HHHHEEEEC-C-CCCCCCCCCCCCCEEEEE
T ss_conf 79999999998-268967999-----5571739999998691777-----533306764-6-776368888662143673
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 699999997489048852057
Q gi|254780791|r 229 DEMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 229 ~e~laraI~~~~iPVisgIGH 249 (529)
|.+=|+.|+++.+|++ -||.
T Consensus 170 DPeAA~~Vl~s~~~i~-~v~l 189 (313)
T 1q8f_A 170 DPEAARVVFTSGVPLV-MMGL 189 (313)
T ss_dssp CHHHHHHHHTSCSCEE-EECH
T ss_pred CHHHHHHHHHCCCCEE-ECCC
T ss_conf 6889999982899636-5466
No 487
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.27 E-value=26 Score=12.07 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=17.1
Q ss_pred HHHHHCCHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCC
Q ss_conf 442200769999999748-90488520577752589886412
Q gi|254780791|r 222 EDLWHFNDEMIVRAIANS-SIPIISAIGHETDWTLADYAADL 262 (529)
Q Consensus 222 eDL~~FN~e~laraI~~~-~iPVisgIGHE~D~Tl~D~VAD~ 262 (529)
++|+-++.+.+...|... .+=-|-=|||+. +|..+|.++
T Consensus 87 ~~lY~~~~~~~l~~i~~~~~~~~vlIVgHnP--~l~~l~~~L 126 (173)
T 2rfl_A 87 DEMYNARSETYLSLIAAQTEVQSVMLVGHNP--TMEATLEAM 126 (173)
T ss_dssp GGGSSCSSSCSHHHHHTCTTCSEEEEEECTT--HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHHHH
T ss_conf 4556798799999998558999799996827--899999999
No 488
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=21.16 E-value=26 Score=12.05 Aligned_cols=177 Identities=15% Similarity=0.234 Sum_probs=82.6
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 27999874894799999735210586681459889999996675288437999997101680079999999999765401
Q gi|254780791|r 52 HAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTLLTALEKRKKKLLEEG 131 (529)
Q Consensus 52 H~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~g~~ql~v~~i~~~g~G~l~~~~e~lk~~L~~eG 131 (529)
.++|+.++..+.-.. +| -++..+....+.|+.|++ ..|...|.|..++..+. .+.-+-...|
T Consensus 90 ~v~l~~~~~~g~~~~-i~-v~y~~l~~~v~~Gd~Ili--------dDG~i~l~v~~v~~~~~--------~i~~~V~~gG 151 (587)
T 2e28_A 90 KLVISMSEVLGTPEK-IS-VTYPSLIDDVSVGAKILL--------DDGLISLEVNAVDKQAG--------EIVTTVLNGG 151 (587)
T ss_dssp EEEEESSCCCCCSSE-EE-BSCTTSTTTCCTTCEEEE--------TTTTEEEEEEEEETTTT--------EEEEECCSCC
T ss_pred EEEEECCCCCCCCCE-EE-CCCHHHHHHCCCCCEEEE--------ECCCEEEEEEEEECCCC--------EEEEEECCCE
T ss_conf 999956886897678-97-450887976679987999--------44836999999715653--------8999973035
Q ss_pred CCCCCCCCCCCCCCCEE----------------------EEEECCCHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCHH
Q ss_conf 22610016310265289----------------------99847842589999998630597--5899972100111103
Q gi|254780791|r 132 LFSDQHKNPIPFIPKII----------------------AVITSPTGAVIRDILQRISCRFP--LRVIIFPVKVQGDECP 187 (529)
Q Consensus 132 lfd~~~k~~lP~~p~~i----------------------~vits~~~a~~~D~~~~~~~r~p--~~~~~~p~~vQG~~a~ 187 (529)
.+..++..-+|..+..+ |+==-.++.-+.++.+.+.+... ..|+- .+
T Consensus 152 ~L~~~KgVn~P~~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~iR~~l~~~~~~~i~IIA---KI------ 222 (587)
T 2e28_A 152 VLKNKKGVNVPGVKVNLPGITEKDRADILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIA---KI------ 222 (587)
T ss_dssp CBCSSCBEECTTSCCCCCSCCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHHTTCTTSEEEE---EE------
T ss_pred EECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEE---EE------
T ss_conf 986997165279867873344545999987612389899856768635699999877652166665578---97------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCC----HHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCC
Q ss_conf 679999999974100357677758999516888----4442200769999999748904885205777525898864123
Q gi|254780791|r 188 KEIANAILQLNTLKEGRTCPRPDIIILARGGGS----IEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLR 263 (529)
Q Consensus 188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS----~eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~R 263 (529)
|-..|++-++..- ...|.|+|+||-=+ +|++ +.--..+++.......|||+|-- .+| |=.+
T Consensus 223 -E~~~av~NldeIi-----~~sDGIMVARGDLGvEip~e~V-P~vQK~II~kc~~~gKPVI~ATQ------MLe--SMi~ 287 (587)
T 2e28_A 223 -ENEEGVANIDEIL-----EAADGLMVARGDLGVEIPAEEV-PLIQKLLIKKSNMLGKPVITATQ------MLD--SMQR 287 (587)
T ss_dssp -CSHHHHHTHHHHH-----HHSSEEEEEHHHHHHHSCGGGH-HHHHHHHHHHHHHHTCCEEEESS------SSG--GGGT
T ss_pred -ECCHHHHHHHHHH-----HHCCEEEEECCCCCCCCCHHHH-HHHHHHHHHHHHHCCCEEEEEHH------HHH--HHHH
T ss_conf -0545776599988-----7565899976663132899998-99999999999981995998168------777--6752
Q ss_pred CCCCHHH
Q ss_conf 7772145
Q gi|254780791|r 264 APTPTGA 270 (529)
Q Consensus 264 a~TPTaA 270 (529)
-|.||-|
T Consensus 288 nprPTRA 294 (587)
T 2e28_A 288 NPRPTRA 294 (587)
T ss_dssp CSSCCHH
T ss_pred CCCCCCH
T ss_conf 8999744
No 489
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=21.12 E-value=21 Score=12.89 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCH-HHHHHHHHHHHHCCCEEEEEE
Q ss_conf 2261001631026528999847842-589999998630597589997
Q gi|254780791|r 132 LFSDQHKNPIPFIPKIIAVITSPTG-AVIRDILQRISCRFPLRVIIF 177 (529)
Q Consensus 132 lfd~~~k~~lP~~p~~i~vits~~~-a~~~D~~~~~~~r~p~~~~~~ 177 (529)
+++...-..+...|+++.||-.-.. .-...++..+.++ +.+|.++
T Consensus 178 ~~t~~~~~~l~~~p~~~vviG~G~ig~e~A~~~~~~~~~-G~~Vtlv 223 (495)
T 2wpf_A 178 CISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPP-GGKVTLC 223 (495)
T ss_dssp CEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCT-TCEEEEE
T ss_pred EEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 675153321654887599986364663065899998728-9889999
No 490
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI- like and ferritin-like domains; YP_324989.1, structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=21.04 E-value=26 Score=12.03 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=15.6
Q ss_pred CCCEEEEECCCCCHHHHHHCCH--HHHHHHHHHCCCEEEEEECC
Q ss_conf 7758999516888444220076--99999997489048852057
Q gi|254780791|r 208 RPDIIILARGGGSIEDLWHFND--EMIVRAIANSSIPIISAIGH 249 (529)
Q Consensus 208 ~~D~iii~RGGGS~eDL~~FN~--e~laraI~~~~iPVisgIGH 249 (529)
.||+|||. ||...+++ ..|. ..+++..++...||. +|+|
T Consensus 73 dyDaLIIP-GG~~~~~~-~~d~~l~~lIr~~~~~gk~I~-aIC~ 113 (365)
T 3fse_A 73 EFDAVVIP-GGMAPDKM-RRNPNTVRFVQEAMEQGKLVA-AVCH 113 (365)
T ss_dssp GCSEEEEC-CBTHHHHH-TTCHHHHHHHHHHHHTTCEEE-EETT
T ss_pred CCCEEEEC-CCCCHHHH-CCCHHHHHHHHHHHHCCCEEE-EECH
T ss_conf 48289988-98557665-328688999999998498798-8557
No 491
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=21.04 E-value=21 Score=12.91 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
Q ss_conf 999998630597589997210011110367999999997410035767775899951688844
Q gi|254780791|r 160 RDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSIE 222 (529)
Q Consensus 160 ~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~e 222 (529)
.+|+..++.+.++++.+..-.-.+.-+...+..++...+ -+.+++==||||.|
T Consensus 92 ~~~~~~i~~~tGi~i~iisg~eEa~l~~~gv~~~~~~~~----------~~~lv~DiGGGStE 144 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMED----------HISLAMDIGGGSVE 144 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTT----------CCEEEEEECSSCEE
T ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCCC----------CEEEEEECCCCCEE
T ss_conf 889999999859987995479999998504202488655----------72899952798479
No 492
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=20.91 E-value=8.5 Score=16.38 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH
Q ss_conf 16310265289998478425899999986305975899972100111103
Q gi|254780791|r 138 KNPIPFIPKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQGDECP 187 (529)
Q Consensus 138 k~~lP~~p~~i~vits~~~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~ 187 (529)
+..||...+.|+|..-++-. ++|+++-+-..|.++....-+.+.|+..+
T Consensus 20 ~LdLp~~~k~I~VkaKptK~-l~evLrpIL~KYgl~l~~v~v~~~ge~~~ 68 (104)
T 1wfy_A 20 QLELVGLERVVRISAKPTKR-LQEALQPILAKHGLSLDQVVLHRPGEKQP 68 (104)
T ss_dssp EEEESSSSSEEEEEECSSSB-TTTTTHHHHTTTTCCTTTCCBCCTTCSSC
T ss_pred EEECCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCHHHEEEEECCCCCC
T ss_conf 98737878578998279982-99999999998087833769995799642
No 493
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=20.90 E-value=26 Score=12.01 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 679999999974100357677758999516888444220
Q gi|254780791|r 188 KEIANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWH 226 (529)
Q Consensus 188 ~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~eDL~~ 226 (529)
+.|+-.+...-..-+......++.|+++ ||||..++|+
T Consensus 383 Egia~~~~~~~~~l~~~~g~~~~~i~~~-GGgs~s~~~~ 420 (504)
T 2d4w_A 383 EATAFQSREVVDAMNADSGVDLTELRVD-GGMVANELLM 420 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCEEEEE-SGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCHHHHHHHH
T ss_conf 9999999999999998639898879998-9523259999
No 494
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=20.82 E-value=26 Score=12.00 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCEEEEEE--CCCHHHHHHHHHHHH------HCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 52899984--784258999999863------0597589997210011110367999999997410035767775899951
Q gi|254780791|r 145 PKIIAVIT--SPTGAVIRDILQRIS------CRFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 145 p~~i~vit--s~~~a~~~D~~~~~~------~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
+.+|++|. +.++.=|..+..-+. ..+.+.+.+... +..-+..-.++++.+-..+ +|.||++
T Consensus 8 ~~~i~~iip~~~~~~y~~~~~~G~~~aa~e~~~~~i~~~i~~~---~~~d~~~q~~~l~~~i~~~-------vDgIii~- 76 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHY---DPYDYNSFVATSQAVIEEQ-------PDGVMFA- 76 (304)
T ss_dssp CEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEE---CSSCHHHHHHHHHHHHTTC-------CSEEEEC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC---CCCCHHHHHHHHHHHHHCC-------CCEEEEE-
T ss_conf 8889999828999989999999999999971548879999968---9899999999999999759-------9999994-
Q ss_pred CCCCHHHHHHCCHH---HHHHHHHHCCCEEEE
Q ss_conf 68884442200769---999999748904885
Q gi|254780791|r 217 GGGSIEDLWHFNDE---MIVRAIANSSIPIIS 245 (529)
Q Consensus 217 GGGS~eDL~~FN~e---~laraI~~~~iPVis 245 (529)
+.+.. .+++...+..||||+
T Consensus 77 ---------~~~~~~~~~~i~~~~~~gipvv~ 99 (304)
T 3gbv_A 77 ---------PTVPQYTKGFTDALNELGIPYIY 99 (304)
T ss_dssp ---------CSSGGGTHHHHHHHHHHTCCEEE
T ss_pred ---------CCCCHHHHHHHHHHHHCCCEEEE
T ss_conf ---------66514059999999975993999
No 495
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=20.76 E-value=26 Score=11.99 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=0.0
Q ss_pred CCEEEEEE-CCCHHHHHHHHHHHHHCCCEEEEEEEC-----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 52899984-784258999999863059758999721-----0011110367999999997410035767775899951
Q gi|254780791|r 145 PKIIAVIT-SPTGAVIRDILQRISCRFPLRVIIFPV-----KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILAR 216 (529)
Q Consensus 145 p~~i~vit-s~~~a~~~D~~~~~~~r~p~~~~~~p~-----~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~R 216 (529)
|++||||- |++..-+.=..-.--.++++.++.++. .+.|..+-.++ ..--..+|+++|++
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~p~~~~~~i~g~~~~~sl------------~dip~~vDlv~i~v 78 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASL------------LDLKEPVDILDVFR 78 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSG------------GGCCSCCSEEEECS
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCEECCEEECCCH------------HHCCCCCCEEEEEE
T ss_conf 8969998106999983999999999789933887877765355682720656------------76489873899980
No 496
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z}
Probab=20.73 E-value=26 Score=11.98 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCH
Q ss_conf 289998478-42589999998630---59758999721001111036799999999741003576777589995168884
Q gi|254780791|r 146 KIIAVITSP-TGAVIRDILQRISC---RFPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGGSI 221 (529)
Q Consensus 146 ~~i~vits~-~~a~~~D~~~~~~~---r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGGS~ 221 (529)
..||||-+. +---+.++++.+.+ ..++.+.++++ +..+..-...++.+.... +|.||+.
T Consensus 9 ~~Igvvvp~~~npf~~~l~~gi~~~~~~~g~~l~v~~~----~~~~~~e~~~~~~~~~~~-------vdgii~~------ 71 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT----ESDLARSRSCLTLLSGKM-------VDGVITM------ 71 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHTHHHHTTC-------CSEEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC----CCCHHHHHHHHHHHHHCC-------CCEEECC------
T ss_conf 98999949997789999999999999985998999978----999899999999986077-------3258414------
Q ss_pred HHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 44220076999999974890488520577752589886412377721456763
Q gi|254780791|r 222 EDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMA 274 (529)
Q Consensus 222 eDL~~FN~e~laraI~~~~iPVisgIGHE~D~Tl~D~VAD~Ra~TPTaAAEla 274 (529)
.++++....+.+.. .+|++.--....+..+.--..|-....=.++..++
T Consensus 72 ---~~~~~~~~~~~~~~-~~p~V~~~~~~~~~~~~~V~~D~~~~~~~~~~~l~ 120 (285)
T 3c3k_A 72 ---DALSELPELQNIIG-AFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLV 120 (285)
T ss_dssp ---CCGGGHHHHHHHHT-TSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHH-CCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf ---63104899999862-59889840457889999899671888999999999
No 497
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=20.72 E-value=27 Score=11.98 Aligned_cols=82 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC--EEEEEECCC------------HHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 26100163102652--899984784------------2589999998630597589997210011110367999999997
Q gi|254780791|r 133 FSDQHKNPIPFIPK--IIAVITSPT------------GAVIRDILQRISCRFPLRVIIFPVKVQGDECPKEIANAILQLN 198 (529)
Q Consensus 133 fd~~~k~~lP~~p~--~i~vits~~------------~a~~~D~~~~~~~r~p~~~~~~p~~vQG~~a~~~i~~ai~~~~ 198 (529)
+..+|+..-...|+ ||||||-.+ -..-.-++..+=..+++++.-+.+.- +-+..|.+|+....
T Consensus 1 ~~~~~~~~~~~~~~~~r~~Iitvgd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~~v~---Dd~~~i~~al~~~~ 77 (178)
T 2pjk_A 1 MSHAHKKHKENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP---DDKIKILKAFTDAL 77 (178)
T ss_dssp ------------CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC---SCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEEC---CCHHHHHHHHHHHH
T ss_conf 996304367438988789999984788766546798755569999999998899898987859---99999999999998
Q ss_pred HHCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 4100357677758999516888444
Q gi|254780791|r 199 TLKEGRTCPRPDIIILARGGGSIED 223 (529)
Q Consensus 199 ~~~~~~~~~~~D~iii~RGGGS~eD 223 (529)
.... +|+||..-|-|--.|
T Consensus 78 ~~~~------~dlVittGG~g~~~~ 96 (178)
T 2pjk_A 78 SIDE------VDVIISTGGTGYSPT 96 (178)
T ss_dssp TCTT------CCEEEEESCCSSSTT
T ss_pred HCCC------CCEEECCCCCCCCCC
T ss_conf 6548------867832587767775
No 498
>2qhk_A Methyl-accepting chemotaxis protein; structural genomics, PSI-2, MCSG, protein structure initiative; 1.91A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.60 E-value=27 Score=11.96 Aligned_cols=73 Identities=11% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCEE
Q ss_conf 77788750268899999999999999999999999999999999999988716967773146199984898895
Q gi|254780791|r 400 AILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNNFI 473 (529)
Q Consensus 400 ~~l~~l~~~~~~~l~~~~~~l~~l~~rL~~~~~~~L~~~~~rL~~l~~~L~slsP~~~L~RGYaiv~~~~GkiI 473 (529)
+....+.+.-..-+...+..|..........+....+..... +.....++.++..+--.-||..|.|.+|..|
T Consensus 5 ~~~~~l~~~r~~l~~~rk~~L~~~v~~a~~~i~~~~~~~~~~-~a~~~a~~~l~~~r~~~~gY~fv~d~~g~~l 77 (174)
T 2qhk_A 5 SLEAELVRDRQELIDARKKELKAYMMMGVTAIKPLYDSDVNG-SNKQAAKEILKAMRFESDGYFFAYDSQGINT 77 (174)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCSTT-TTHHHHHHHHHHCCSBTTBCCEEECTTSBEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCCCCCEEEEECCCCCEE
T ss_conf 899999999999999999999999999999999998755487-9999999999846178986499995999789
No 499
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=20.56 E-value=27 Score=11.96 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCEEEEEECC--CHHHHHHHHHHHHHC---CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 5289998478--425899999986305---97589997210011110367999999997410035767775899951688
Q gi|254780791|r 145 PKIIAVITSP--TGAVIRDILQRISCR---FPLRVIIFPVKVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGGG 219 (529)
Q Consensus 145 p~~i~vits~--~~a~~~D~~~~~~~r---~p~~~~~~p~~vQG~~a~~~i~~ai~~~~~~~~~~~~~~~D~iii~RGGG 219 (529)
|.+||||++. .+--+..+..-+.+. .++.+.+.......+.....=..+|+.+-... +|.|||.-.+.
T Consensus 43 ~~~I~vi~p~~~~s~f~~~v~~~i~~~~~~~g~~~~i~~~~~~~~~d~~~q~~~i~~~i~~~-------vdgiIi~~~~~ 115 (342)
T 1jx6_A 43 PIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSK-------SDYLIFTLDTT 115 (342)
T ss_dssp CEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTT-------CSEEEECCSSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC-------CCEEEEECCCC
T ss_conf 96899997999888899999999999999769956999996488769999999999999749-------98899946872
Q ss_pred CHHHHHHCCHHHHHHHHHHCCCEEEE
Q ss_conf 84442200769999999748904885
Q gi|254780791|r 220 SIEDLWHFNDEMIVRAIANSSIPIIS 245 (529)
Q Consensus 220 S~eDL~~FN~e~laraI~~~~iPVis 245 (529)
+..++ +.++.....+||+.
T Consensus 116 ~~~~~-------i~~~~~~~~~~Vv~ 134 (342)
T 1jx6_A 116 RHRKF-------VEHVLDSTNTKLIL 134 (342)
T ss_dssp TTHHH-------HHHHHHHCSCEEEE
T ss_pred CHHHH-------HHHHHHCCCCEEEE
T ss_conf 22899-------99999719986998
No 500
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=20.52 E-value=27 Score=11.95 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCC
Q ss_conf 7775899951688
Q gi|254780791|r 207 PRPDIIILARGGG 219 (529)
Q Consensus 207 ~~~D~iii~RGGG 219 (529)
.+||+||| |||
T Consensus 3 ~~yDvvII--G~G 13 (450)
T 1ges_A 3 KHYDYIAI--GGG 13 (450)
T ss_dssp CEEEEEEE--CCS
T ss_pred CCCCEEEE--CCC
T ss_conf 75869999--678
Done!