HHSEARCH alignment of GI: 254780791 and SCOP domain: d1n9wa1

Alignment

Probab=93.01  E-value=0.35  Score=26.64  Aligned_cols=71  Identities=13%  Similarity=0.081  Sum_probs=56.0

Q ss_pred             CCEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCC--CEEEEEEEEEEE
Q ss_conf             718999997054356888627999874894799999735210586681459889999996675288--437999997101
Q gi|254780791|r   33 SHVCVRGEISGYRGIHSSGHAYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGS--SKYQIIIESLIP  110 (529)
Q Consensus        33 ~~~~v~gEis~~~~~~~sGH~Yf~lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v~~~g~~~~y~~~--g~~ql~v~~i~~  110 (529)
                      ..|+|.|=|.+.|.  .++=.+++|.|..+.+.|++-..      -.+..|.-|.+.|.+. ..|+  |.+.+.++.++.
T Consensus        14 ~~V~v~GwV~~~R~--~gk~~Fi~LrD~sg~iQ~v~~~~------~~~~~e~~v~v~G~v~-~~~~~~~~~Ei~v~~i~i   84 (93)
T d1n9wa1          14 QEVELLGFLHWRRD--LGRIQFLLLRDRSGVVQVVTGGL------KLPLPESALRVRGLVV-ENAKAPGGLEVQAKEVEV   84 (93)
T ss_dssp             SEEEEEEEEEEEEE--CSSEEEEEEEETTEEEEEEEESC------CCCCTTCEEEEEEEEE-ECTTSTTSEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEEE--CCCCEEEEEECCCCCCEEEECCC------CCCCCCEEEEEEEEEE-ECCCCCCCEEEEEEEEEE
T ss_conf             99999899993782--79809999983985243784244------3355431999999999-899999889999809999


Q ss_pred             CC
Q ss_conf             68
Q gi|254780791|r  111 SG  112 (529)
Q Consensus       111 ~g  112 (529)
                      -|
T Consensus        85 l~   86 (93)
T d1n9wa1          85 LS   86 (93)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             85

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Anticodon-binding domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-2 [TaxId: 274]