RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large
subunit [Candidatus Liberibacter asiaticus str. psy62]
(529 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 75.4 bits (185), Expect = 3e-14
Identities = 91/528 (17%), Positives = 165/528 (31%), Gaps = 247/528 (46%)
Query: 22 YHLKHIVESNLSHVCVRGEISGYRGIHSSGHAYF-SLKDNHSRIDAIIWKGTLNKIE--F 78
+ + + +S A F ++ + ++++ AI + G N + F
Sbjct: 127 ITARIMAKRPFDK------------KSNS--ALFRAVGEGNAQLVAI-FGGQGN-TDDYF 170
Query: 79 LPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSGSGTL--LTALEKRKKKLLEEGLFSD- 135
EE + T Y +++ LI + TL L +K+ +GL +
Sbjct: 171 --EELRDLY-----QT------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NI 215
Query: 136 ----QHKNPIP---FIPKIIAVITSPTGAVIRDILQRISCRFPLRVII-------FPV-- 179
++ + P ++ ++ P ISC PL I + V
Sbjct: 216 LEWLENPSNTPDKDYL------LSIP-----------ISC--PL---IGVIQLAHYVVTA 253
Query: 180 KVQGDECPKEIANAILQLNTLKEGRTCPRPDIIILARGG---G-------SIEDLW-HFN 228
K+ G P E+ + + +G T G G + D W F
Sbjct: 254 KLLGFT-PGELRSYL-------KGAT------------GHSQGLVTAVAIAETDSWESFF 293
Query: 229 D------EMI----VR---AIANSSIPIISAIGHETDWTLAD-YAADLRAPTP----TGA 270
++ VR A N+S+P +I L D + P+P +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLP--PSI-------LEDSLENNEGVPSPMLSISNL 344
Query: 271 AEMAV-----------PVKEHLQSSLINLEARLNNIIIRLIKYKINT--------LNSLL 311
+ V P + ++ SL+N A+ N+++ + LN L
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVN-GAK--NLVV--------SGPPQSLYGLNLTL 393
Query: 312 ---KALPNSDQTLSCSRYRLDRLPRELEHNLEIIIF--RKYRHFNHIINR---IKSDFLI 363
KA DQ+ R+P F RK + NR + S F
Sbjct: 394 RKAKAPSGLDQS---------RIP-----------FSERKLK----FSNRFLPVASPF-- 427
Query: 364 HNIQKNRQHILEKQQHIEQIVKQHLRY--IFLEKKE-KIAILHM-----LREQTKN---R 412
H+ H+L ++ + L + K+ +I + LR + + R
Sbjct: 428 HS------HLLVP---ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 413 IFYL------H---------THIKKLITRIEF---------ILSHKIK 436
I THI ++F +L+H+ K
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHI------LDFGPGGASGLGVLTHRNK 520
Score = 43.8 bits (103), Expect = 9e-05
Identities = 61/435 (14%), Positives = 110/435 (25%), Gaps = 194/435 (44%)
Query: 208 RPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTP 267
RP + L+ G S+E + +P S + L PT
Sbjct: 7 RP--LTLSHG--SLEHVL--------------LVPTASFFIASQLQ--EQFNKILPEPTE 46
Query: 268 TGA--AEMAVPVKEHLQSSLINLEARLNNI--------IIRLI------KY-KINTLNSL 310
A E P L + + L ++ L Y + N +++L
Sbjct: 47 GFAADDEPTTPA--ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 311 LKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNR 370
L + T + + Y + R K
Sbjct: 105 AAKLLQENDTTLVKTKE---------------LIKNYITARIMAKR--------PFDKKS 141
Query: 371 QHILEK---------------QQHIEQIVKQHLRYI------FLEKKEKIAIL-HMLRE- 407
L + Q + + ++ LR + + + I L E
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVG--DLIKFSAETLSEL 198
Query: 408 -QTKNRIFYLHTH-------IKKLITR--IEFILSHKIKSC---------HTSVSITTRI 448
+T + T ++ +++LS I SC H V T ++
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVV--TAKL 255
Query: 449 L------------------Q---------------SFAYKNTLK----------RGY--- 462
L Q SF + + K R Y
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAY 314
Query: 463 --TSI-----QDTNNN---------------------FITQ-KRNLATKTRI---LINFF 490
TS+ +D+ N ++ + +L ++ L+N
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-- 372
Query: 491 DGQANAIVINKAPPK 505
G N +V PP+
Sbjct: 373 -GAKNLVV--SGPPQ 384
Score = 31.5 bits (71), Expect = 0.48
Identities = 29/152 (19%), Positives = 46/152 (30%), Gaps = 60/152 (39%)
Query: 3 PFSQKNSLDHPEYSVSELS----YHLKH------IVESNL--SHVCVRGE---ISGYRGI 47
PFS++ ++S L +H ++ +L ++V + I Y
Sbjct: 408 PFSERK----LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY--- 460
Query: 48 HS-SGHAYFSLKDN--HSRIDAII-----WKGTLNKIEFLPEEGIEFLVIGKITTFPGSS 99
+ G L + +D II W+ T I L G PG +
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ----FKATHI--LDFG-----PGGA 509
Query: 100 KYQIIIESLIPSGSGTLLTALEKRKKKLLEEG 131
SG G L R K +G
Sbjct: 510 -----------SGLGVLT----HRNK----DG 522
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 34.1 bits (77), Expect = 0.082
Identities = 26/205 (12%), Positives = 61/205 (29%), Gaps = 10/205 (4%)
Query: 328 LDRLPRELEHNLEII---IFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIV 384
+D + ++ + + +F ++ K+ ++ ++ + +QI
Sbjct: 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKN--IVELMRGDFAKANNNDNTFKQI- 114
Query: 385 KQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSVSI 444
+ LR + K+ + + +K+L I+ KI+SC S S
Sbjct: 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID----IKIRSCKGSCSR 170
Query: 445 TTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANAIVINKAPP 504
++ + N + L I + + +AP
Sbjct: 171 ALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPL 230
Query: 505 KEQPTKKCQLHNNKREKQGTQGELF 529
+ + + Q E G G
Sbjct: 231 EWKALLEMQQTKMVLETFGGDGHAR 255
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in neurons
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 33.3 bits (75), Expect = 0.13
Identities = 15/173 (8%), Positives = 53/173 (30%), Gaps = 3/173 (1%)
Query: 270 AAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLD 329
+ E +++ + + + K + K + L ++
Sbjct: 99 KNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYH 158
Query: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLR 389
+E + + K + K L+ + K RQ + + Q+ E++++ +
Sbjct: 159 LACKEERLAMTREMNSKTEQSVTPEQQKK---LVDKVDKCRQDVQKTQEKYEKVLEDVGK 215
Query: 390 YIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSV 442
+ + ++ + R+ +L + + + + + +
Sbjct: 216 TTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYREL 268
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Length = 525
Score = 33.2 bits (75), Expect = 0.16
Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 16/175 (9%)
Query: 145 PKIIAVITSPTGAVIRDILQRISCRFPLRVIIFPVKVQG-----DECPKEIANAILQLNT 199
P+ +AV + T +++D IS L V + P+++ + E A+++
Sbjct: 86 PQAMAVALTCTAELLQDDPNGISRALNLPVPVVPLELPSYSRKENYGADETFRALVRALA 145
Query: 200 LKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYA 259
+ RT P +L G ++ + + + +A I +
Sbjct: 146 VPMERT-PEVTCNLL--GATALGFRHRDDVAEVTKLLATMGIKVNVCAPLGASPDDLRKL 202
Query: 260 ADLRAPTPTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKAL 314
A + E +S+ +LE +++ + L +
Sbjct: 203 GQ--------AHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGATRDFLAEV 249
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 32.3 bits (73), Expect = 0.29
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 145 PKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKV---QGDECP--KEIANA 193
P IIAV T+ + D L + P ++ G +
Sbjct: 97 PDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQG 156
Query: 194 ILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236
I+ + G + ++I G + ++ + M + I
Sbjct: 157 IVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYI 199
>2r5f_A Transcriptional regulator, putative; transcription regulator,
sugar-binding domain, structural genomics, PFAM04198,
PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Length = 264
Score = 30.3 bits (68), Expect = 1.2
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 12/132 (9%)
Query: 151 ITSPTGAVIRDILQRISCRFPLR-VIIFPVKVQGDE--CPKEIANAILQL--NTLKEGRT 205
P G + ++ R+ + +R VI+ DE + I +A +L
Sbjct: 2 NARPQGLHL-ELETRLQKMYGIRQVIVVEATEPDDEESIKQAIGSAAAHYLETSLSAQ-- 58
Query: 206 CPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAP 265
D I ++ +I + + A + ++ +G++ + L
Sbjct: 59 ----DHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATL 114
Query: 266 TPTGAAEMAVPV 277
A +
Sbjct: 115 LNCPAFLLPSQS 126
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 30.0 bits (66), Expect = 1.3
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 43 GYRGIHSSGHAYFSLKDNHSRIDAI-IWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKY 101
G H ID I ++ ++ E + + + Y
Sbjct: 178 GAVNREGKEHYLA-----KGSIDEISLFNKAISDQEVSTIPLSNPFQLIFQSGDSTQANY 232
Query: 102 QIIIESLIPSGSGTLLTALEKRK 124
I +L SG +L++++ R
Sbjct: 233 -FRIPTLYTLSSGRVLSSIDARY 254
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold; HET: DNA; 3.00A {Thermus
aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 29.8 bits (66), Expect = 1.6
Identities = 13/104 (12%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 53 AYFSLKDNHSRIDAIIWKGTLNKIEFLPEEGIEFLVIGKITTFPGSSKYQIIIESLIPSG 112
A F+L D ++ +++ + +E I LV+ ++ + +++ +++
Sbjct: 1066 ARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEK---GEELRVLAQAVWT-- 1120
Query: 113 SGTLLTALEKRKKKLLEEGLFSDQHKNPIPFIPKIIAVITSPTG 156
L + + K L + D + ++ +++ G
Sbjct: 1121 ----LEEVLEAPKALE---VEVDHALLDEKGVARLKSLLDEHPG 1157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A
Length = 170
Score = 29.8 bits (66), Expect = 1.7
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF-LIHNIQKNRQHILE 375
S T+ CS L +P + +++ + N I F + + + +
Sbjct: 10 SGTTVDCSGKSLASVPTGIPTTTQVLYL----YDNQITKLEPGVFDRLTQLTRLDLDNNQ 65
Query: 376 KQQHIEQIVKQ--HLRYIFLEKKEKIAILHMLREQTKN 411
+ + L + L + +I + K+
Sbjct: 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 103
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective
decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella
bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A*
3dtv_A* 3eis_A*
Length = 240
Score = 28.7 bits (64), Expect = 3.0
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 11/105 (10%)
Query: 148 IAVITSPTGAVIRDILQRISCRFPL---RVIIFPVKVQG-DECPKEIANAILQLNTLKEG 203
I +I P ++ R+ P + + V +G D + + + +L
Sbjct: 9 IGMIVPPAAGLVPADGARLYPDLPFIASGLGLGSVTPEGYDAVIESVVDHARRLQKQG-- 66
Query: 204 RTCPRPDIIILARGGGSIEDLWHFNDEMIVRAIANSSIPIISAIG 248
++ L S FN + V + +P +
Sbjct: 67 -----AAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMST 106
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3lll_A 3hah_A 3hai_A
Length = 312
Score = 28.3 bits (62), Expect = 4.1
Identities = 12/174 (6%), Positives = 54/174 (31%), Gaps = 5/174 (2%)
Query: 270 AAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLD 329
A + E +++ + + K + K + + ++
Sbjct: 108 KASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHH 167
Query: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIK-SDFLIHNIQKNRQHILEKQQHIEQIVKQHL 388
+E + + K + K D + Q + + ++ ++++ +
Sbjct: 168 AACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP 227
Query: 389 RYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSV 442
+Y+ + + ++ + R+ + + ++ ++ K+ + +
Sbjct: 228 QYM----ENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDL 277
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 28.5 bits (63), Expect = 4.3
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 17/131 (12%)
Query: 316 NSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF----------LIHN 365
+ + C LD +P + + E + + + F L +N
Sbjct: 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDL----QSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 366 IQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLRE--QTKNRIFYL-HTHIKK 422
+ + + + L L + N++ L +
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 423 LITRIEFILSH 433
L E L+
Sbjct: 130 LTKLKELRLNT 140
>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil,
cytoplasm, endocytosis, phosphoprotein, polymorphism,
SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A
Length = 325
Score = 28.2 bits (62), Expect = 4.8
Identities = 13/173 (7%), Positives = 53/173 (30%), Gaps = 3/173 (1%)
Query: 270 AAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLD 329
+ E +++ + + + K + K + L ++
Sbjct: 102 KNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYH 161
Query: 330 RLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVKQHLR 389
+E + + + K + + L + K +Q + + Q+ E++++ +
Sbjct: 162 LACKEEKLAMTREMNSKT---EQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGK 218
Query: 390 YIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIKSCHTSV 442
+ + ++ + R+ +L + + + + + +
Sbjct: 219 TTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYREL 271
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, polymorphism, splicing, glycoprotein,
leucine-rich repeat; 1.80A {Homo sapiens}
Length = 193
Score = 28.2 bits (61), Expect = 4.9
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNH 352
D + CS L LP+ + ++ + +
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLV 46
>1xwd_C Follicle stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, cysteine- knot motif,
hormone/growth factor complex; HET: NAG BMA; 2.92A {Homo
sapiens} SCOP: c.10.2.7
Length = 252
Score = 27.9 bits (60), Expect = 5.2
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF 361
S++ C ++ +P +L N + F + K F
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAF 50
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION
channel, membrane PROT malignant hyperthermia, cardiac
arrhythmia; 2.50A {Oryctolagus cuniculus}
Length = 559
Score = 27.5 bits (60), Expect = 7.4
Identities = 13/140 (9%), Positives = 41/140 (29%), Gaps = 8/140 (5%)
Query: 289 EARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFRKYR 348
E++ +I + L + + L + +L+ +I
Sbjct: 397 ESQAARMIHSTAGLYNQFIKGLDSFSGKPRGSGPPAGPALP--IEAVILSLQDLIGYFEP 454
Query: 349 HFNHIINRIKSDFLIHNIQKNRQHILEKQQHIEQIVK-QHLRYIFLEKKEKIAILHMLRE 407
+ + K L +NRQ + +++ + ++ ++ E
Sbjct: 455 PSEELQHEEKQSKLRSL--RNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEY---AGE 509
Query: 408 QTKNRIFYLHTHIKKLITRI 427
+ + + +L+ +
Sbjct: 510 EAAESWKEIVNLLYELLASL 529
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
{Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
1a1s_A
Length = 315
Score = 27.7 bits (61), Expect = 7.5
Identities = 18/185 (9%), Positives = 56/185 (30%), Gaps = 27/185 (14%)
Query: 226 HFNDEMIVRAIANSSIPIISAIGHETDWTLADYAADLRAPTPTGAAEMAVPVKEHLQSSL 285
++ + + +++P+I+ + D P A + + E +
Sbjct: 109 VYDHKDVEDLAKYATVPVINGLS------------DFSHPCQALA--DYMTIWEKKGT-- 152
Query: 286 INLEARLNNIIIRLIKYKINTLNSLLKALPNSDQTLSCSRYRLDRLPRELEHNLEIIIFR 345
+ + + + N +SL+ A + + ++ E
Sbjct: 153 ------IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAE 206
Query: 346 KYRHFNHIINRIK----SDFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEK-KEKIA 400
F + + +K +D + ++ + E ++ + + ++ K
Sbjct: 207 SGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYM 266
Query: 401 ILHML 405
+H L
Sbjct: 267 FMHCL 271
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 27.4 bits (60), Expect = 8.5
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 1/124 (0%)
Query: 360 DFLIHNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTH 419
DF +LE + ++Q I + I ++ I L
Sbjct: 27 DFFNKYRLTTDGELLEIEGLLQQATNS-TGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQK 85
Query: 420 IKKLITRIEFILSHKIKSCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNL 479
KK+I I + + +T +T + + LK+ ++ +
Sbjct: 86 SKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPCKDTAEI 145
Query: 480 ATKT 483
T
Sbjct: 146 QETT 149
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.137 0.398
Gapped
Lambda K H
0.267 0.0541 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,615,412
Number of extensions: 226354
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 58
Length of query: 529
Length of database: 5,693,230
Length adjustment: 97
Effective length of query: 432
Effective length of database: 3,341,562
Effective search space: 1443554784
Effective search space used: 1443554784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.9 bits)