RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large
subunit [Candidatus Liberibacter asiaticus str. psy62]
         (529 letters)



>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 522

 Score = 30.4 bits (68), Expect = 0.33
 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 14/97 (14%)

Query: 145 PKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKVQG-----DECPKEIANA 193
           P +IAV T+    VI D L             P    +                  +   
Sbjct: 143 PDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEG 202

Query: 194 ILQL---NTLKEGRTCPRPDIIILARGGGSIEDLWHF 227
           I +     ++ +        I I+      + +    
Sbjct: 203 IARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVI 239


>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
           [TaxId: 7227]}
          Length = 192

 Score = 29.4 bits (64), Expect = 0.74
 Identities = 13/124 (10%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF-LIHNIQKNRQHILE 375
              T+ C+   L  +PR++  +   ++           + +      +  ++  R  +  
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 376 KQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKI 435
            + +  +           E K K     M     + +   L+ +    +    F   + +
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 436 KSCH 439
            S +
Sbjct: 129 TSLN 132


>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 457

 Score = 29.3 bits (65), Expect = 0.76
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 143 FIPKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKV---QGDECP--KEIA 191
           + P IIAV T+     + D L     +       P   ++         G        + 
Sbjct: 94  YNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMV 153

Query: 192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236
             I+   +   G    + ++I    G   + ++    + M +  I
Sbjct: 154 QGIVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYI 198


>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 242

 Score = 28.3 bits (61), Expect = 1.6
 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF 361
           S++   C   ++  +P +L  N   + F        +    K  F
Sbjct: 9   SNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAF 49


>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
           phenylalanine-repressible {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 462

 Score = 27.9 bits (62), Expect = 1.9
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 267 PTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKI-NTLNSLLKALPNSDQTLSCSR 325
           P    E+AV   E L     + +     ++ R+  +K+ + L  +++ +  +   +    
Sbjct: 309 PNMTPELAVEYVERLDP---HNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVI--- 362

Query: 326 YRLDRLPRELEH--NLEIIIFRKYRHFNHIINRIKSDFLIHN 365
           ++ D +     H    E     K RHF+ I++ ++  F +H 
Sbjct: 363 WQCDPM-----HGNTHESSTGFKTRHFDRIVDEVQGFFEVHR 399


>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
           glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 266

 Score = 27.4 bits (59), Expect = 2.6
 Identities = 24/201 (11%), Positives = 48/201 (23%), Gaps = 6/201 (2%)

Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEK 376
           S   ++C +  L  LP +L  +  I+        N +     +        +  Q  L++
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTILHL----SENLLYTFSLATL--MPYTRLTQLNLDR 64

Query: 377 QQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIK 436
            +  +  V   L  +         +  +           +       +T +       + 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 437 SCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANA 496
                      +        T       +   NNN       L      L      + + 
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 497 IVINKAPPKEQPTKKCQLHNN 517
             I K            LH N
Sbjct: 185 YTIPKGFFGSHLLPFAFLHGN 205


>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 525

 Score = 27.4 bits (60), Expect = 3.0
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 145 PKIIAVITSPTGAVIRD----ILQRISCRFPLRVIIFPV---KVQGDECPKEIANAILQL 197
           P  I V  +    +I D    +    S    + V  F     K         IAN  +  
Sbjct: 135 PAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMT 194

Query: 198 NTLKEGRTCPRPDIIILARGGGSIEDLWHFN---DEMIVRAIA 237
           + + +G    +   I +        D W  +   +++     A
Sbjct: 195 DIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNA 237


>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 519

 Score = 27.3 bits (60), Expect = 3.0
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 18/98 (18%)

Query: 145 PKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKVQG---------DECPKE 189
           P+IIAV T+    VI D LQ               + +                D   + 
Sbjct: 142 PEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAHTPSFIGSHVTGWDNMFEG 201

Query: 190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF 227
            A         + G+    P + ++      + +    
Sbjct: 202 FAKTFTADYQGQPGKL---PKLNLVTGFETYLGNFRVL 236


>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
           chain {Azotobacter vinelandii [TaxId: 354]}
          Length = 477

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 145 PKIIAVITSPTGAVIRDILQRISCRF--PLRVIIFPVKVQG 183
            K I+V +     +I D ++ +S      L   I PV+ +G
Sbjct: 142 NKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEG 182


>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 284

 Score = 26.3 bits (56), Expect = 6.0
 Identities = 16/136 (11%), Positives = 35/136 (25%), Gaps = 4/136 (2%)

Query: 307 LNSLLKALPNSDQTLSCSRYRLDRLPREL---EHNLEIIIFRKYRHFNHIINRIKSDFLI 363
           L ++   +P + Q +     R+  +P        NL I+                   L+
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 364 HNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKL 423
             +  +    L             L  + L++     +      +    + YL+     L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNAL 141

Query: 424 ITRIEFILSHKIKSCH 439
               +          H
Sbjct: 142 QALPDDTFRDLGNLTH 157


>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 305

 Score = 26.2 bits (56), Expect = 7.7
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF 361
             + + CS   L+++P++L  +  ++        N I      DF
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDL----QNNKITEIKDGDF 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,000,819
Number of extensions: 99837
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 25
Length of query: 529
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 439
Effective length of database: 1,171,896
Effective search space: 514462344
Effective search space used: 514462344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.6 bits)