RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62] (529 letters) >d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]} Length = 522 Score = 30.4 bits (68), Expect = 0.33 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 14/97 (14%) Query: 145 PKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKVQG-----DECPKEIANA 193 P +IAV T+ VI D L P + + Sbjct: 143 PDMIAVSTTCMAEVIGDDLNAFINNSKKEGFIPDEFPVPFAHTPSFVGSHVTGWDNMFEG 202 Query: 194 ILQL---NTLKEGRTCPRPDIIILARGGGSIEDLWHF 227 I + ++ + I I+ + + Sbjct: 203 IARYFTLKSMDDKVVGSNKKINIVPGFETYLGNFRVI 239 >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 Score = 29.4 bits (64), Expect = 0.74 Identities = 13/124 (10%), Positives = 38/124 (30%), Gaps = 1/124 (0%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF-LIHNIQKNRQHILE 375 T+ C+ L +PR++ + ++ + + + ++ R + Sbjct: 9 EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68 Query: 376 KQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKI 435 + + + E K K M + + L+ + + F + + Sbjct: 69 IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128 Query: 436 KSCH 439 S + Sbjct: 129 TSLN 132 >d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Clostridium pasteurianum [TaxId: 1501]} Length = 457 Score = 29.3 bits (65), Expect = 0.76 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 11/105 (10%) Query: 143 FIPKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKV---QGDECP--KEIA 191 + P IIAV T+ + D L + P ++ G + Sbjct: 94 YNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMV 153 Query: 192 NAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHFNDEMIVRAI 236 I+ + G + ++I G + ++ + M + I Sbjct: 154 QGIVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYI 198 >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 Score = 28.3 bits (61), Expect = 1.6 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF 361 S++ C ++ +P +L N + F + K F Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAF 49 >d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]} Length = 462 Score = 27.9 bits (62), Expect = 1.9 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 14/102 (13%) Query: 267 PTGAAEMAVPVKEHLQSSLINLEARLNNIIIRLIKYKI-NTLNSLLKALPNSDQTLSCSR 325 P E+AV E L + + ++ R+ +K+ + L +++ + + + Sbjct: 309 PNMTPELAVEYVERLDP---HNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVI--- 362 Query: 326 YRLDRLPRELEH--NLEIIIFRKYRHFNHIINRIKSDFLIHN 365 ++ D + H E K RHF+ I++ ++ F +H Sbjct: 363 WQCDPM-----HGNTHESSTGFKTRHFDRIVDEVQGFFEVHR 399 >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 Score = 27.4 bits (59), Expect = 2.6 Identities = 24/201 (11%), Positives = 48/201 (23%), Gaps = 6/201 (2%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDFLIHNIQKNRQHILEK 376 S ++C + L LP +L + I+ N + + + Q L++ Sbjct: 11 SHLEVNCDKRNLTALPPDLPKDTTILHL----SENLLYTFSLATL--MPYTRLTQLNLDR 64 Query: 377 QQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKLITRIEFILSHKIK 436 + + V L + + + + +T + + Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124 Query: 437 SCHTSVSITTRILQSFAYKNTLKRGYTSIQDTNNNFITQKRNLATKTRILINFFDGQANA 496 + T + NNN L L + + Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 Query: 497 IVINKAPPKEQPTKKCQLHNN 517 I K LH N Sbjct: 185 YTIPKGFFGSHLLPFAFLHGN 205 >d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]} Length = 525 Score = 27.4 bits (60), Expect = 3.0 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 10/103 (9%) Query: 145 PKIIAVITSPTGAVIRD----ILQRISCRFPLRVIIFPV---KVQGDECPKEIANAILQL 197 P I V + +I D + S + V F K IAN + Sbjct: 135 PAAIGVYATCPVGLIGDDILAVAATASKEIGIPVHAFSCEGYKGVSQSAGHHIANNTVMT 194 Query: 198 NTLKEGRTCPRPDIIILARGGGSIEDLWHFN---DEMIVRAIA 237 + + +G + I + D W + +++ A Sbjct: 195 DIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNA 237 >d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]} Length = 519 Score = 27.3 bits (60), Expect = 3.0 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 18/98 (18%) Query: 145 PKIIAVITSPTGAVIRDILQRISCRF------PLRVIIFPVKVQG---------DECPKE 189 P+IIAV T+ VI D LQ + + D + Sbjct: 142 PEIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAHTPSFIGSHVTGWDNMFEG 201 Query: 190 IANAILQLNTLKEGRTCPRPDIIILARGGGSIEDLWHF 227 A + G+ P + ++ + + Sbjct: 202 FAKTFTADYQGQPGKL---PKLNLVTGFETYLGNFRVL 236 >d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]} Length = 477 Score = 26.9 bits (59), Expect = 3.7 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 145 PKIIAVITSPTGAVIRDILQRISCRF--PLRVIIFPVKVQG 183 K I+V + +I D ++ +S L I PV+ +G Sbjct: 142 NKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEG 182 >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Score = 26.3 bits (56), Expect = 6.0 Identities = 16/136 (11%), Positives = 35/136 (25%), Gaps = 4/136 (2%) Query: 307 LNSLLKALPNSDQTLSCSRYRLDRLPREL---EHNLEIIIFRKYRHFNHIINRIKSDFLI 363 L ++ +P + Q + R+ +P NL I+ L+ Sbjct: 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82 Query: 364 HNIQKNRQHILEKQQHIEQIVKQHLRYIFLEKKEKIAILHMLREQTKNRIFYLHTHIKKL 423 + + L L + L++ + + + YL+ L Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNAL 141 Query: 424 ITRIEFILSHKIKSCH 439 + H Sbjct: 142 QALPDDTFRDLGNLTH 157 >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 Score = 26.2 bits (56), Expect = 7.7 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 4/45 (8%) Query: 317 SDQTLSCSRYRLDRLPRELEHNLEIIIFRKYRHFNHIINRIKSDF 361 + + CS L+++P++L + ++ N I DF Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPDTALLDL----QNNKITEIKDGDF 51 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0466 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,000,819 Number of extensions: 99837 Number of successful extensions: 297 Number of sequences better than 10.0: 1 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 25 Length of query: 529 Length of database: 2,407,596 Length adjustment: 90 Effective length of query: 439 Effective length of database: 1,171,896 Effective search space: 514462344 Effective search space used: 514462344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.6 bits)