HHsearch alignment for GI: 254780793 and conserved domain: COG0534
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
Probab=99.97 E-value=4.3e-29 Score=170.06 Aligned_cols=237 Identities=19% Similarity=0.266 Sum_probs=206.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4324100013468887643201202333202556-556630577775332110000001112322100234444332236
Q gi|254780793|r 226 LTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQ 304 (518)
Q Consensus 226 ~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~ 304 (518)
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~-~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAI-FIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCHH
T ss_conf 115799999999999999999999999999999965089999999999999999999-9999999999999997499889
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 78999897541134421589999985257231112104786445545666655542010567753123202354433101
Q gi|254780793|r 305 KSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMK 384 (518)
Q Consensus 305 ~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~ 384 (518)
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~----~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 166 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGA----PAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTK 166 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 9999999999999999999999999969999998599----767999999999999999999999999999998589914
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCCCHHHHHHHHHH
Q ss_conf 34677788868999998752021----120049999999999999999999997115---------78898899999999
Q gi|254780793|r 385 APMKFTIVSIAINLTIAIGSFPF----IGGYGIALAEVSSSWVNTICLAITLLKRKQ---------INLPFKTIYRILSV 451 (518)
Q Consensus 385 ~~~~~~~~~~~vni~l~~~li~~----~G~~G~a~at~i~~~~~~~~~~~~l~k~~~---------~~~~~~~~~~~~~~ 451 (518)
T Consensus 167 ~~m~~~~~~~~lNi~Ln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 246 (455)
T COG0534 167 TPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRL 246 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 87999999999999997999995131212220999999999999999999999634300355420147999999999996
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780793|r 452 SISAGLMGFFIILFRP 467 (518)
Q Consensus 452 ~~~~~im~~~~~~~~~ 467 (518)
T Consensus 247 G~p~~~~~~~~~~~~~ 262 (455)
T COG0534 247 GLPIFLESLSESLGFL 262 (455)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 6469999999999999