HHsearch alignment for GI: 254780793 and conserved domain: COG0728
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only].
Probab=99.57 E-value=1.3e-12 Score=83.04 Aligned_cols=202 Identities=16% Similarity=0.153 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99999999999999999999999995777578999999997899999997577899999999999844897899999999
Q gi|254780793|r 7 FLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSE 86 (518)
Q Consensus 7 ~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~ 86 (518)
T Consensus 238 ~~p~~l~~sisQ-i~lli~~~iAS~l~~Gsis-~l~YA~rl~qlPlGifgv-ai~tvllP~lSr~~~~~~~~~~~~~l~~ 314 (518)
T COG0728 238 MLPALLGVSISQ-INLLIDTAIASFLAEGSVS-WLYYADRLYQLPLGIFGV-ALSTVLLPSLSRHAANGDWPEFLKLLDW 314 (518)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999-9999999999860135099-999999999715899999-9999987999997506765989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 99999999999999999965343444578875410111124565544433212468887656889988422279999998
Q gi|254780793|r 87 IFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPI 166 (518)
Q Consensus 87 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~v 166 (518)
T Consensus 315 ~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d-~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~i 393 (518)
T COG0728 315 GLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAED-VLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAI 393 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 9999999999999999998999999995358998577-999999999998744899999999999998038773769999
Q ss_pred HHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 540103467777623568654432000122111011100023101210365
Q gi|254780793|r 167 VINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDGV 217 (518)
Q Consensus 167 i~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 217 (518)
T Consensus 394 i~~~~n~~l~~~l~-----~~~~~~giala~s~a~~~~~~ll~~~l~k~~~ 439 (518)
T COG0728 394 ISLVVNILLNLLLI-----PPLGHVGLALATSLAAWVNALLLYYLLRKRLV 439 (518)
T ss_pred HHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999978-----61352299999999999999999999998437