HHsearch alignment for GI: 254780793 and conserved domain: TIGR00797
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=100.00 E-value=1.5e-35 Score=204.11 Aligned_cols=391 Identities=16% Similarity=0.150 Sum_probs=322.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999999999999995777578999999-99789999999757789999999999984489789999999999
Q gi|254780793|r 10 VCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVA-FYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIF 88 (518)
Q Consensus 10 ~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a-~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~ 88 (518)
T Consensus 2 ~~~~~~~q~~~~l~-D~~~vG~lg~~~La-av~~g~~~~~~~~~~-~~~g-l~~a~~~~~aq~~Ga~~~~~~~~~~~~~~ 77 (412)
T TIGR00797 2 AILANILQPLLGLV-DTAFVGHLGPVDLA-AVGLGISSVFMLLIS-ILLG-LGTATTALVAQAVGAGNRQRLGRQAQQSL 77 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHCCCCHHHHH-HHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 17899999888798-66300231189999-999999999999999-9999-99889999999883324899999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999999999996534344457887541011112456554443321246888765688998842227999999854
Q gi|254780793|r 89 SILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVI 168 (518)
Q Consensus 89 ~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~vi~ 168 (518)
T Consensus 78 ~la~~lg~~~~~~~~~~~~~l~~~~~~-----~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~ 152 (412)
T TIGR00797 78 LLALLLGLPVLLVGLFFIDPLLSLMGA-----DGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIG 152 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999888889984179-----888999899989999999999999999999974542258999999999
Q ss_pred HCHHHHHHHHHHC-CCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC----CCCC--CCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0103467777623-56865443200012211101110002310121036----5444--567754324100013468887
Q gi|254780793|r 169 NVFPIFALTYALW-HPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG----VKLR--FQYPRLTHNVKFFLKLTFPLM 241 (518)
Q Consensus 169 ni~~i~~~~~~~~-~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~k~~l~~~~p~~ 241 (518)
T Consensus 153 ~~~Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~ 232 (412)
T TIGR00797 153 NLLNIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLLKLGLPIA 232 (412)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999983898717888712477766899999999999999999997121243212244433025899999998708999
Q ss_pred HHHHHCCCHHHHH-CCCCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6432012023332-0255655-6630577775332110000001112322100234444332236789998975411344
Q gi|254780793|r 242 VTGGIIQISNIVG-RAIASRE-TGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISF 319 (518)
Q Consensus 242 l~~~~~~i~~~i~-~~~as~~-~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~ 319 (518)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~-m~~~G~~~A~~~~vG~~lGa~~~~~a~~~~~~~~~~~~~ 311 (412)
T TIGR00797 233 LRVILESLSFALVALLVARLGGSIALAAHQVALNVESLLF-MPAFGLGIAVSILVGQALGAGDPKRAKEVARVALKLSLL 311 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999873167324677899999999999-999899999999999985146878999999999999999
Q ss_pred CHHHHHHHHHHCCCC---CCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 215899999852572---311121047864455456666555420105677531232023544331013467778886-8
Q gi|254780793|r 320 FGIPSAVALFMLSKE---IVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI-A 395 (518)
Q Consensus 320 i~~p~~~~l~~~~~~---ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~-~ 395 (518)
T Consensus 312 ~~~~~~~~~~~~~~~g~Pi~~l-Ft---~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~G~lrG~G~~~~~~~~~~~~~~~ 387 (412)
T TIGR00797 312 LGLVLAIILILFREVGLPIARL-FT---NDPEVLELAASYLIFVALFQFSDGIQFVLSGVLRGAGDTKVILIITFISYWV 387 (412)
T ss_pred HHHHHHHHHHHHCCCCCCHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999999830236424555-07---9576999999999999999987789999999998327257999999999999
Q ss_pred HHHHHHHHHC------CCCCCCHHH
Q ss_conf 9999987520------211200499
Q gi|254780793|r 396 INLTIAIGSF------PFIGGYGIA 414 (518)
Q Consensus 396 vni~l~~~li------~~~G~~G~a 414 (518)
T Consensus 388 ~~lP~~~ll~~td~~~~~~g~~g~W 412 (412)
T TIGR00797 388 IGLPVGYLLGRTDLFYTGLGLNGLW 412 (412)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999996125665256520259