HHsearch alignment for GI: 254780793 and conserved domain: TIGR00797

>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=100.00  E-value=1.5e-35  Score=204.11  Aligned_cols=391  Identities=16%  Similarity=0.150  Sum_probs=322.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             99999999999999999999995777578999999-99789999999757789999999999984489789999999999
Q gi|254780793|r   10 VCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVA-FYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIF   88 (518)
Q Consensus        10 ~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a-~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~   88 (518)
T Consensus         2 ~~~~~~~q~~~~l~-D~~~vG~lg~~~La-av~~g~~~~~~~~~~-~~~g-l~~a~~~~~aq~~Ga~~~~~~~~~~~~~~   77 (412)
T TIGR00797         2 AILANILQPLLGLV-DTAFVGHLGPVDLA-AVGLGISSVFMLLIS-ILLG-LGTATTALVAQAVGAGNRQRLGRQAQQSL   77 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHCCCCHHHHH-HHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             17899999888798-66300231189999-999999999999999-9999-99889999999883324899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             99999999999999996534344457887541011112456554443321246888765688998842227999999854
Q gi|254780793|r   89 SILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVI  168 (518)
Q Consensus        89 ~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~vi~  168 (518)
T Consensus        78 ~la~~lg~~~~~~~~~~~~~l~~~~~~-----~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~  152 (412)
T TIGR00797        78 LLALLLGLPVLLVGLFFIDPLLSLMGA-----DGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIG  152 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999888889984179-----888999899989999999999999999999974542258999999999


Q ss_pred             HCHHHHHHHHHHC-CCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC----CCCC--CCCCCCCCCCCHHHHHHHHHH
Q ss_conf             0103467777623-56865443200012211101110002310121036----5444--567754324100013468887
Q gi|254780793|r  169 NVFPIFALTYALW-HPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG----VKLR--FQYPRLTHNVKFFLKLTFPLM  241 (518)
Q Consensus       169 ni~~i~~~~~~~~-~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~k~~l~~~~p~~  241 (518)
T Consensus       153 ~~~Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~  232 (412)
T TIGR00797       153 NLLNIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLLKLGLPIA  232 (412)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             99999983898717888712477766899999999999999999997121243212244433025899999998708999


Q ss_pred             HHHHHCCCHHHHH-CCCCCCC-CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             6432012023332-0255655-6630577775332110000001112322100234444332236789998975411344
Q gi|254780793|r  242 VTGGIIQISNIVG-RAIASRE-TGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISF  319 (518)
Q Consensus       242 l~~~~~~i~~~i~-~~~as~~-~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~  319 (518)
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~G~~~~lA~~~~~~~~~~~~~-m~~~G~~~A~~~~vG~~lGa~~~~~a~~~~~~~~~~~~~  311 (412)
T TIGR00797       233 LRVILESLSFALVALLVARLGGSIALAAHQVALNVESLLF-MPAFGLGIAVSILVGQALGAGDPKRAKEVARVALKLSLL  311 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999873167324677899999999999-999899999999999985146878999999999999999


Q ss_pred             CHHHHHHHHHHCCCC---CCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf             215899999852572---311121047864455456666555420105677531232023544331013467778886-8
Q gi|254780793|r  320 FGIPSAVALFMLSKE---IVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI-A  395 (518)
Q Consensus       320 i~~p~~~~l~~~~~~---ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~-~  395 (518)
T Consensus       312 ~~~~~~~~~~~~~~~g~Pi~~l-Ft---~d~~v~~~~~~~l~~~~~~~~~~~~~~v~~G~lrG~G~~~~~~~~~~~~~~~  387 (412)
T TIGR00797       312 LGLVLAIILILFREVGLPIARL-FT---NDPEVLELAASYLIFVALFQFSDGIQFVLSGVLRGAGDTKVILIITFISYWV  387 (412)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHH-HC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999999999830236424555-07---9576999999999999999987789999999998327257999999999999


Q ss_pred             HHHHHHHHHC------CCCCCCHHH
Q ss_conf             9999987520------211200499
Q gi|254780793|r  396 INLTIAIGSF------PFIGGYGIA  414 (518)
Q Consensus       396 vni~l~~~li------~~~G~~G~a  414 (518)
T Consensus       388 ~~lP~~~ll~~td~~~~~~g~~g~W  412 (412)
T TIGR00797       388 IGLPVGYLLGRTDLFYTGLGLNGLW  412 (412)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999999996125665256520259