HHsearch alignment for GI: 254780793 and conserved domain: TIGR00797
>TIGR00797 matE MATE efflux family protein; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transporter activity, 0015297 antiporter activity, 0006855 multidrug transport, 0016020 membrane.
Probab=99.96 E-value=2.6e-27 Score=160.64 Aligned_cols=234 Identities=18% Similarity=0.229 Sum_probs=197.1
Q ss_pred HHHHHHHHCCCHHHHHCCCCCC-CCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8876432012023332025565-56630577775-332110000001112322100234444332236789998975411
Q gi|254780793|r 239 PLMVTGGIIQISNIVGRAIASR-ETGIISAIQYA-ERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518)
Q Consensus 239 p~~l~~~~~~i~~~i~~~~as~-~~g~vs~~~~a-~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518)
T Consensus 1 P~~~~~~~q~~~~l~D~~~vG~lg~~~Laav~~g~~~~~~~~~-~~~~gl~~a~~~~~aq~~Ga~~~~~~~~~~~~~~~l 79 (412)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVGLGISSVFMLLI-SILLGLGTATTALVAQAVGAGNRQRLGRQAQQSLLL 79 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9178999998887986630023118999999999999999999-999999988999999988332489999999999999
Q ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34421589999985257231112104786445545666655542010567753123202354433101346777888689
Q gi|254780793|r 317 ISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAI 396 (518)
Q Consensus 317 ~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~v 396 (518)
T Consensus 80 a~~lg~~~~~~~~~~~~~l~~~-~~---~~~~~~~~a~~Yl~~~~~g~P~~~~~~~~~~~l~g~~~t~~p~~~~~~~~~~ 155 (412)
T TIGR00797 80 ALLLGLPVLLVGLFFIDPLLSL-MG---ADGEVAELAQEYLRILILGIPAYLLSFVLRGFLRGQGDTKTPMYITLIGNLL 155 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999888889984-17---9888999899989999999999999999999974542258999999999999
Q ss_pred HHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999875202------11200499999999999999999999971-----------157889889999999999999999
Q gi|254780793|r 397 NLTIAIGSFP------FIGGYGIALAEVSSSWVNTICLAITLLKR-----------KQINLPFKTIYRILSVSISAGLMG 459 (518)
Q Consensus 397 ni~l~~~li~------~~G~~G~a~at~i~~~~~~~~~~~~l~k~-----------~~~~~~~~~~~~~~~~~~~~~im~ 459 (518)
T Consensus 156 Ni~L~~~li~G~fG~P~lG~~GaA~At~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~ 235 (412)
T TIGR00797 156 NIVLDYILIFGKFGFPELGIVGAALATVISYWLMFLLLLYYIKKSAQAKKIGLKWEGLLKPDWEVLKRLLKLGLPIALRV 235 (412)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99983898717888712477766899999999999999999997121243212244433025899999998708999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999998655310002
Q gi|254780793|r 460 FFIILFRPYFNQFSSATT 477 (518)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~ 477 (518)
T Consensus 236 ~~~~~~~~~~~~~~~~~G 253 (412)
T TIGR00797 236 ILESLSFALVALLVARLG 253 (412)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999987316