HHsearch alignment for GI: 254780793 and conserved domain: TIGR01695
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=596.83 Aligned_cols=511 Identities=31% Similarity=0.524 Sum_probs=460.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 1368899999999999999999999999995777578999999997899999997--57789999999999984489789
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAA--EGIFHNSFIPLFSQEKENNGSES 79 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~--~G~~~~a~ip~~~~~~~~~~~~~ 79 (518)
T Consensus 1 sl~k~~~~v~~~TL~SRi~GfvR~~i~a~~fGag~~~DAF~vA~~~Pn~~RrlfaGiEGA~~~aFvP~f~~~~~~~g~~~ 80 (538)
T TIGR01695 1 SLLKSTLIVSLGTLFSRILGFVRDAIIASAFGAGLVADAFNVAFKIPNLLRRLFAGIEGAFSSAFVPVFKKAKKKEGEKE 80 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 92899999999999999999999999998836770799999999988999999852302477889999999996155578
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999-99999999999999999999996534344457887-541011-112456554443321246888765688998842
Q gi|254780793|r 80 AQR-LSSEIFSILILSLVVLTVVVELILPLLIRFIIAPG-FADQSD-KYFLTIQLSRVMFPSIIFISLASLVTGMLFALG 156 (518)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g-~~~~~~-~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~ 156 (518)
T Consensus 81 ~~~~f~~~~~~l~~~~~~l~~~~~~~~a-~~~~~l~a~g~~~~~~~nk~~~a~~l~~~~~pyl~l~sL~~~~~~~Ln~~~ 159 (538)
T TIGR01695 81 ARRAFAEKVLTLLILVLLLVVLLGIFFA-PIVISLLAPGLFADDAANKFSLAVSLLRITFPYLLLISLAAVFGAILNARE 159 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999999999999978-889973176435740245899999999999999999999999999997755
Q ss_pred CHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEHH-------HHHHHHHHHHHCCCCCHHHCCC---CCCCCCCCCC
Q ss_conf 22799999985401034677776235686544320001-------2211101110002310121036---5444567754
Q gi|254780793|r 157 RYFIASIAPIVINVFPIFALTYALWHPSSPQETTYLLA-------WGVFLSNVVHFWIVYCCAKNDG---VKLRFQYPRL 226 (518)
Q Consensus 157 ~f~~~a~~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a-------~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~ 226 (518)
T Consensus 160 ~F~~ps~~P~l~N~~~I~~l~~~~~~~~~~~~~g~~~~~~~~LL~~gvl~GG~~Q~l~~~~~l~~~G~R~~~~~prf~~~ 239 (538)
T TIGR01695 160 RFFIPSFSPVLFNISVIVSLLFLDVSLGQLALAGMYLALIELLLAIGVLIGGVAQLLIQLPALRKAGIRGLLLKPRFNFR 239 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 55256799999999999999999863012466667899999999999999999999999999710673035531010335
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHC---CCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 32410001346888764320120233320---2556-5566305777753321100000011123221002344443322
Q gi|254780793|r 227 THNVKFFLKLTFPLMVTGGIIQISNIVGR---AIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKN 302 (518)
Q Consensus 227 ~~~~k~~l~~~~p~~l~~~~~~i~~~i~~---~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d 302 (518)
T Consensus 240 ~~~l~~~l~~~~p~~lg~s~~q~~~l~~t~L~~~AS~l~~Gs~s~~~yA~r~~~LP~gif~vsl~~v~lP~~s~~~~~~~ 319 (538)
T TIGR01695 240 DPGLKRFLKLMLPTTLGVSASQITLLINTRLLALASFLEIGSVSALYYASRLYQLPLGIFGVSLATVLLPKLSKHASEGN 319 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 45899999999999999999999999999999873155268999999999999989999999999999999998850268
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 36789998975411344215899999852572311121047864455456666555420105677531232023544331
Q gi|254780793|r 303 KQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQND 382 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~ 382 (518)
T Consensus 320 ~~~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g~F~~~~~~~ta~~L~~y~lGl~~~~l~~vL~~~fYA~~d 399 (538)
T TIGR01695 320 WNELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERGAFSEEDALMTATILAAYALGLIFYSLQKVLLRAFYARKD 399 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999999998899999885378888889999999999999989999999999877875530
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---H
Q ss_conf 0134677788868999998----75202112004999999999999999999999711578898899999999999---9
Q gi|254780793|r 383 MKAPMKFTIVSIAINLTIA----IGSFPFIGGYGIALAEVSSSWVNTICLAITLLKRKQINLPFKTIYRILSVSIS---A 455 (518)
Q Consensus 383 ~~~~~~~~~~~~~vni~l~----~~li~~~G~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~---~ 455 (518)
T Consensus 400 ~~tP~~~~~~~~~~n~~l~GlCy~~l~~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~v~as~~~ 479 (538)
T TIGR01695 400 TKTPFIVSVISVVLNVLLSGLCYLLLIFPLGLSGIALATSLAAIVSAVLLYLRLKKRLKGILDIGVLKKLLKLVIASILA 479 (538)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 20489999999999999988999988888736899999999999999999999865204776135789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999999999986553100-02799999999999999999999999960078999999
Q gi|254780793|r 456 GLMGFFIILFRPYFNQFSSA-TTFFDPFKNLVIMLSGAMLVYLFSIFLFLGKDFLSPLQ 513 (518)
Q Consensus 456 ~im~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~vY~~~l~l~~~~~~~~~l~ 513 (518)
T Consensus 480 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~i~~~~y~~~~~~~~~~~~~~~~r 538 (538)
T TIGR01695 480 AIIGVVLYLLVSVLAWSLGGKKFLVKNLLGLLALGLIGLLVYFLALALLKIEELELLLR 538 (538)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998865203344312456689999999999999999999962999987409