HHsearch alignment for GI: 254780793 and conserved domain: TIGR01695
>TIGR01695 mviN integral membrane protein MviN; InterPro: IPR004268 The sequencing of a number of pathogenic bacterial genomes has led to novel virulence proteins being discovered that are yet to be biochemically characterised. One example is the MviN family of proteins, first described in Salmonella , and conserved across a wide variety of pathogens in both animals and plants. Further work on these proteins of as yet unknown function has revealed they are integral membrane molecules, and are part of an operon essential in at least one species . ; GO: 0009405 pathogenesis, 0016021 integral to membrane.
Probab=99.52 E-value=1.9e-12 Score=82.29 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 1368899999999999999999999---9999957775789999999978999999975778999999999998448978
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRET---LVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSE 78 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~---~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~ 78 (518)
T Consensus 245 ~~l~~~~p~~lg~s~~q~~~l~-~t~L~~~AS~l~~Gs~s-~~~yA~r~~~LP~gif~v-sl~~v~lP~~s~~~~~~~~~ 321 (538)
T TIGR01695 245 RFLKLMLPTTLGVSASQITLLI-NTRLLALASFLEIGSVS-ALYYASRLYQLPLGIFGV-SLATVLLPKLSKHASEGNWN 321 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999999999999-99999873155268999-999999999989999999-99999999999885026868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 99999999999999999999999999653434445788754101111245655444332124688876568899884222
Q gi|254780793|r 79 SAQRLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRY 158 (518)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f 158 (518)
T Consensus 322 ~~~~~~~~~i~~~~~l~~P~s~~l~~ls~~I~~llf~~g~F~~-~~~~~ta~~L~~y~lGl~~~~l~~vL~~~fYA~~d~ 400 (538)
T TIGR01695 322 ELEELLNQGIRLTLLLTIPSSFGLLVLSEPIVSLLFERGAFSE-EDALMTATILAAYALGLIFYSLQKVLLRAFYARKDT 400 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999988999998853788888-899999999999999899999999998778755302
Q ss_pred HHHHHHHHHHHCHHHHHH----HHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 799999985401034677----7762356865443200012211101110002310121036
Q gi|254780793|r 159 FIASIAPIVINVFPIFAL----TYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG 216 (518)
Q Consensus 159 ~~~a~~~vi~ni~~i~~~----~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 216 (518)
T Consensus 401 ~tP~~~~~~~~~~n~~l~GlCy~~l-----~~~l~~~G~a~a~~~~~~~~~~~l~~~l~~~~ 457 (538)
T TIGR01695 401 KTPFIVSVISVVLNVLLSGLCYLLL-----IFPLGLSGIALATSLAAIVSAVLLYLRLKKRL 457 (538)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0489999999999999988999988-----88873689999999999999999999986520