HHsearch alignment for GI: 254780793 and conserved domain: TIGR02900

>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.56  E-value=1.2e-12  Score=83.32  Aligned_cols=225  Identities=20%  Similarity=0.230  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13468887643201202333202556--5566305777753321100000011123221002344443322367899989
Q gi|254780793|r  234 LKLTFPLMVTGGIIQISNIVGRAIAS--RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQN  311 (518)
Q Consensus       234 l~~~~p~~l~~~~~~i~~~i~~~~as--~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~  311 (518)
T Consensus         2 lkg~fiL~~a~~iTr~LGFifri~ls~~LGaEGvGLY~l~~P~y~L~itL~~~Gl~~AISk~~Ae~~a~~D~~n~~kil~   81 (493)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGLAMPIYFLFITLTTGGLPVAISKFVAEASAKNDKKNIKKILK   81 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             04899999998884677898899886542366311788899999999999865399999999999871377446689999


Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             75411344215899999852572311121047864455456666555420105677531232023544331013467778
Q gi|254780793|r  312 QAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTI  391 (518)
Q Consensus       312 ~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~  391 (518)
T Consensus        82 ~S~~f~~~~s~~v~~~~f~~~p~Ia~~ll~-------D-~R~~~~l~~i~P~~~~iA~SsvLkGYFqG~~~~~~~A~~qv  153 (493)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLAPFIASTLLK-------D-ERSLYSLLVICPAVPIIALSSVLKGYFQGISNMKPPAYIQV  153 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             999999999999999999998999985167-------6-07899999983289999998888887553550546789999


Q ss_pred             HHHHHHHHHHHHHCCCC---C----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CHH-HHHHHHHHHH
Q ss_conf             88689999987520211---2----0049999999999999999999997115788----------988-9999999999
Q gi|254780793|r  392 VSIAINLTIAIGSFPFI---G----GYGIALAEVSSSWVNTICLAITLLKRKQINL----------PFK-TIYRILSVSI  453 (518)
Q Consensus       392 ~~~~vni~l~~~li~~~---G----~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~----------~~~-~~~~~~~~~~  453 (518)
T Consensus       154 ~Eq~vRI~~~~~li~~F~~~~~e~ava~A~~~~~lGE~~SLl~l~~~f~~~~~~~~r~~~~~~~~egk~q~l~~l~~~S~  233 (493)
T TIGR02900       154 IEQIVRISVVALLISLFLPYGVEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSISIRKPFFDYKSEGKAQLLFDLLSVSL  233 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             99999999999999988413688999999999999999999999999888600253156345553328999999999986


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780793|r  454 SAGLMGFFIILFR  466 (518)
Q Consensus       454 ~~~im~~~~~~~~  466 (518)
T Consensus       234 P~t~srf~~s~l~  246 (493)
T TIGR02900       234 PLTLSRFIGSLLY  246 (493)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             4888899999999