HHsearch alignment for GI: 254780793 and conserved domain: TIGR02900
>TIGR02900 spore_V_B stage V sporulation protein B; InterPro: IPR014249 This entry represents SpoVB, which is the stage V sporulation protein B of the bacterial endospore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with high sequence similarity to SpoVB exist, such as YkvU from B. subtilis and a number Clostridium proteins, but they are excluded from this entry. .
Probab=99.56 E-value=1.2e-12 Score=83.32 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHCCCCC--CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13468887643201202333202556--5566305777753321100000011123221002344443322367899989
Q gi|254780793|r 234 LKLTFPLMVTGGIIQISNIVGRAIAS--RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQN 311 (518)
Q Consensus 234 l~~~~p~~l~~~~~~i~~~i~~~~as--~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~ 311 (518)
T Consensus 2 lkg~fiL~~a~~iTr~LGFifri~ls~~LGaEGvGLY~l~~P~y~L~itL~~~Gl~~AISk~~Ae~~a~~D~~n~~kil~ 81 (493)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGLAMPIYFLFITLTTGGLPVAISKFVAEASAKNDKKNIKKILK 81 (493)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 04899999998884677898899886542366311788899999999999865399999999999871377446689999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 75411344215899999852572311121047864455456666555420105677531232023544331013467778
Q gi|254780793|r 312 QAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTI 391 (518)
Q Consensus 312 ~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~ 391 (518)
T Consensus 82 ~S~~f~~~~s~~v~~~~f~~~p~Ia~~ll~-------D-~R~~~~l~~i~P~~~~iA~SsvLkGYFqG~~~~~~~A~~qv 153 (493)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLAPFIASTLLK-------D-ERSLYSLLVICPAVPIIALSSVLKGYFQGISNMKPPAYIQV 153 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 999999999999999999998999985167-------6-07899999983289999998888887553550546789999
Q ss_pred HHHHHHHHHHHHHCCCC---C----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----------CHH-HHHHHHHHHH
Q ss_conf 88689999987520211---2----0049999999999999999999997115788----------988-9999999999
Q gi|254780793|r 392 VSIAINLTIAIGSFPFI---G----GYGIALAEVSSSWVNTICLAITLLKRKQINL----------PFK-TIYRILSVSI 453 (518)
Q Consensus 392 ~~~~vni~l~~~li~~~---G----~~G~a~at~i~~~~~~~~~~~~l~k~~~~~~----------~~~-~~~~~~~~~~ 453 (518)
T Consensus 154 ~Eq~vRI~~~~~li~~F~~~~~e~ava~A~~~~~lGE~~SLl~l~~~f~~~~~~~~r~~~~~~~~egk~q~l~~l~~~S~ 233 (493)
T TIGR02900 154 IEQIVRISVVALLISLFLPYGVEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSISIRKPFFDYKSEGKAQLLFDLLSVSL 233 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999988413688999999999999999999999999888600253156345553328999999999986
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780793|r 454 SAGLMGFFIILFR 466 (518)
Q Consensus 454 ~~~im~~~~~~~~ 466 (518)
T Consensus 234 P~t~srf~~s~l~ 246 (493)
T TIGR02900 234 PLTLSRFIGSLLY 246 (493)
T ss_pred HHHHHHHHHHHHH
T ss_conf 4888899999999