HHsearch alignment for GI: 254780793 and conserved domain: pfam03023

>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=100.00  E-value=0  Score=556.07  Aligned_cols=440  Identities=32%  Similarity=0.543  Sum_probs=414.3

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99995777578999999997899999997577899999999999844897899999999999999999999999999653
Q gi|254780793|r   28 VAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRLSSEIFSILILSLVVLTVVVELILP  107 (518)
Q Consensus        28 ~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  107 (518)
T Consensus         1 iA~~fGa~~~~DAf~~A~~iPn~l~~l~~~Gals~afIP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~fap   79 (452)
T pfam03023         1 IAAYFGAGPLADAFNVAFRIPNLLRRLFAEGAFSSAFVPVFAELKQ-ADKDEAAEFVRRVSTLLIGVLLLVTLLGILAAP   79 (452)
T ss_pred             CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9499787848699999999899999999999999999999999985-396999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC
Q ss_conf             43444578875410111124565544433212468887656889988422279999998540103467777623568654
Q gi|254780793|r  108 LLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASIAPIVINVFPIFALTYALWHPSSPQ  187 (518)
Q Consensus       108 ~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~~~vi~ni~~i~~~~~~~~~~~~~~  187 (518)
T Consensus        80 ~lv~-l~a~Gf~--~~~~~la~~l~ri~~p~i~f~~l~a~~~~~Lna~~~F~~~a~~pi~~N~~~I~~ll~~~~~--~g~  154 (452)
T pfam03023        80 WVIR-LLAPGFD--AETFSLTVSLLRITFPYLLLVSLSAVFGAVLNARKKFFAPAFSPVLLNIGVILTLLFLANY--FGR  154 (452)
T ss_pred             HHHH-HHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCH
T ss_conf             9999-9858875--4689999999999999999999999999999883885557875898999999999999985--561


Q ss_pred             CCCEEHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHH
Q ss_conf             432000122111011100023101210365444567754324100013468887643201202333202556-5566305
Q gi|254780793|r  188 ETTYLLAWGVFLSNVVHFWIVYCCAKNDGVKLRFQYPRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIIS  266 (518)
Q Consensus       188 ~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs  266 (518)
T Consensus       155 ~~i~~la~g~~~G~~~q~l~~~~~l~k~g~~~~~~~~~~~~~lk~~~~l~~P~~l~~~~~qin~lvd~~~AS~l~~G~vs  234 (452)
T pfam03023       155 EPIYGLAIGVLIGGVLQLLVQLPFLRKAGLLLKPRFNFRDKGVKRFLALALPTLLGVSVSQLNLLIDTALASFLAEGSIS  234 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             89999999999999999999999999829964554354543688999999999999999999999999998735432799


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCC
Q ss_conf             77775332110000001112322100234444332236789998975411344215899999852572311121047864
Q gi|254780793|r  267 AIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFS  346 (518)
Q Consensus       267 ~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~  346 (518)
T Consensus       235 ~l~yA~rl~~lP~gi~~vai~tv~~P~lS~~~~~~d~~~~~~~l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG~F~  314 (452)
T pfam03023       235 YLYYADRIYQLPLGIFGVSVSTVLLPRLSRHAKDGDWDEFLDLLDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERGAFS  314 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999888787899999855998889999998768999999999999999999999999999997899999998048999


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             45545666655542010567753123202354433101346777888689999987520211200499999999999999
Q gi|254780793|r  347 SQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSIAINLTIAIGSFPFIGGYGIALAEVSSSWVNTI  426 (518)
Q Consensus       347 ~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~~vni~l~~~li~~~G~~G~a~at~i~~~~~~~  426 (518)
T Consensus       315 ~~~~~~ta~~L~~y~~gl~~~~l~~il~r~fyA~~dtktP~~~s~i~~~~ni~l~~~l~~~~g~~GlAlatsis~~v~~~  394 (452)
T pfam03023       315 PEDVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTKTPFKISLISAVLNILLSLLLLPPLGVVGLALATSLSAWINLV  394 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998899999999998858657858899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999997115788988999999999999999999999999865531
Q gi|254780793|r  427 CLAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFS  473 (518)
Q Consensus       427 ~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~im~~~~~~~~~~~~~~~  473 (518)
T Consensus       395 ll~~~l~k~~~~~~~~~~~~~~~k~~~as~~m~~~~~~~~~~~~~~~  441 (452)
T pfam03023       395 FLYYILRKRLGGHSLRGWKTFLASLVVPTALMGGVILLLSSLTQGLW  441 (452)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999998658776059999999999999999999999999860254