HHsearch alignment for GI: 254780793 and conserved domain: pfam03023
>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=99.78 E-value=7.6e-17 Score=105.45 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 68899999999999999999999999995777578999999997899999997577899999999999844897899999
Q gi|254780793|r 4 IRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRL 83 (518)
Q Consensus 4 ~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~ 83 (518)
T Consensus 201 ~~l~~P~~l~~~~~qin~lv-d~~~AS~l~~G~vs-~l~yA~rl~~lP~gi~~v-ai~tv~~P~lS~~~~~~d~~~~~~~ 277 (452)
T pfam03023 201 LALALPTLLGVSVSQLNLLI-DTALASFLAEGSIS-YLYYADRIYQLPLGIFGV-SVSTVLLPRLSRHAKDGDWDEFLDL 277 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999999999999-99998735432799-999998887878999998-5599888999999876899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999999999999999965343444578875410111124565544433212468887656889988422279999
Q gi|254780793|r 84 SSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASI 163 (518)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~ 163 (518)
T Consensus 278 l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG~F~~~-~~~~ta~~L~~y~~gl~~~~l~~il~r~fyA~~dtktP~~ 356 (452)
T pfam03023 278 LDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERGAFSPE-DVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTKTPFK 356 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999999999999999999999789999999804899999-9999999999999988999999999988586578588999
Q ss_pred HHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf 99854010346777762356865443200012211101110002310121036
Q gi|254780793|r 164 APIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG 216 (518)
Q Consensus 164 ~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 216 (518)
T Consensus 357 ~s~i~~~~ni~l~~~l-----~~~~g~~GlAlatsis~~v~~~ll~~~l~k~~ 404 (452)
T pfam03023 357 ISLISAVLNILLSLLL-----LPPLGVVGLALATSLSAWINLVFLYYILRKRL 404 (452)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999-----99999999999999999999999999999865