HHsearch alignment for GI: 254780793 and conserved domain: pfam03023

>pfam03023 MVIN MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologues of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.
Probab=99.78  E-value=7.6e-17  Score=105.45  Aligned_cols=204  Identities=13%  Similarity=0.119  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             68899999999999999999999999995777578999999997899999997577899999999999844897899999
Q gi|254780793|r    4 IRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRL   83 (518)
Q Consensus         4 ~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~   83 (518)
T Consensus       201 ~~l~~P~~l~~~~~qin~lv-d~~~AS~l~~G~vs-~l~yA~rl~~lP~gi~~v-ai~tv~~P~lS~~~~~~d~~~~~~~  277 (452)
T pfam03023       201 LALALPTLLGVSVSQLNLLI-DTALASFLAEGSIS-YLYYADRIYQLPLGIFGV-SVSTVLLPRLSRHAKDGDWDEFLDL  277 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             99999999999999999999-99998735432799-999998887878999998-5599888999999876899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             99999999999999999999965343444578875410111124565544433212468887656889988422279999
Q gi|254780793|r   84 SSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIASI  163 (518)
Q Consensus        84 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~a~  163 (518)
T Consensus       278 l~~~l~~~~~l~iPa~v~l~vl~~pIv~llf~rG~F~~~-~~~~ta~~L~~y~~gl~~~~l~~il~r~fyA~~dtktP~~  356 (452)
T pfam03023       278 LDQAIRLTLLLMIPASFGLLVLSDPIVSVLYERGAFSPE-DVTATAGVLAAYALGLIPYALVKLLSRVFYAREDTKTPFK  356 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             999999999999999999999789999999804899999-9999999999999988999999999988586578588999


Q ss_pred             HHHHHHCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHCCC
Q ss_conf             99854010346777762356865443200012211101110002310121036
Q gi|254780793|r  164 APIVINVFPIFALTYALWHPSSPQETTYLLAWGVFLSNVVHFWIVYCCAKNDG  216 (518)
Q Consensus       164 ~~vi~ni~~i~~~~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~  216 (518)
T Consensus       357 ~s~i~~~~ni~l~~~l-----~~~~g~~GlAlatsis~~v~~~ll~~~l~k~~  404 (452)
T pfam03023       357 ISLISAVLNILLSLLL-----LPPLGVVGLALATSLSAWINLVFLYYILRKRL  404 (452)
T ss_pred             HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999-----99999999999999999999999999999865