Query gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 518
No_of_seqs 208 out of 3436
Neff 9.1
Searched_HMMs 23785
Date Mon May 30 13:45:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780793.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 3.1E-41 1.4E-45 233.0 18.4 418 2-434 13-445 (460)
2 3mkt_A Multi antimicrobial ext 99.9 8.1E-23 3.4E-27 135.8 13.3 241 224-470 5-262 (460)
3 1oqw_A Fimbrial protein; type 62.5 4.3 0.00018 15.9 2.7 36 46-81 2-37 (144)
4 2hi2_A Fimbrial protein; type 33.2 15 0.00061 13.1 1.6 25 49-73 5-29 (158)
5 1fc3_A SPO0A; response regulat 2.7 2.6E+02 0.011 6.5 2.0 33 284-317 44-76 (120)
6 1j1v_A Chromosomal replication 2.4 2.9E+02 0.012 6.2 1.7 22 291-312 49-70 (94)
7 2d7d_A Uvrabc system protein B 2.4 3E+02 0.013 6.2 1.8 23 292-315 614-636 (661)
8 2jyc_A Uncharacterized protein 2.3 3.1E+02 0.013 6.0 0.9 30 286-315 120-149 (160)
9 2fg1_A Conserved hypothetical 2.3 3.2E+02 0.013 6.0 1.3 28 288-315 120-147 (158)
10 2eee_A Uncharacterized protein 2.2 3.3E+02 0.014 5.9 1.4 30 286-315 109-138 (149)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=3.1e-41 Score=233.02 Aligned_cols=418 Identities=11% Similarity=0.045 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 13688999999999999999999999999957775789999999978999999975778999999999998448978999
Q gi|254780793|r 2 KIIRNFLTVCASTLGSRFLGFIRETLVAATLGVGKVTDVFYVAFYLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 2 ~~~k~~~~~~~~~~~skilG~~r~~~~a~~~G~~~~~da~~~a~~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
++.|-+...++..+...+.|++....+++ +|+.+.+ +...+.++.++...+. . +++.+..+..+|+.+++|+|+++
T Consensus 13 ~l~~la~P~~~~~l~~~~~~~vD~~~vg~-lg~~~la-av~~~~~i~~~~~~~~-~-gl~~g~~~lvaq~~G~~~~~~~~ 88 (460)
T 3mkt_A 13 NLIKLATPVLIASVAQTGMGFVDTIMAGG-VSAIDMA-AVSIAASIWLPSILFG-V-GLLMALVPVVAQLNGAGRQHKIP 88 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHH-HTTTTSS-HHHHHHHHHHHHHHHH-H-HHHHHHGGGCTTTTSSSSTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999875-2889999-9999999999999999-9-99999999999997399989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999999999999999999653434445788754101111245655444332124688876568899884222799
Q gi|254780793|r 82 RLSSEIFSILILSLVVLTVVVELILPLLIRFIIAPGFADQSDKYFLTIQLSRVMFPSIIFISLASLVTGMLFALGRYFIA 161 (518)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~a~g~~~~~~~~~la~~~~~i~~p~~~~~~~~~~~~~~l~~~~~f~~~ 161 (518)
+..++.+....+.+..+. +.+.+.|++...+. .+++..+.+..+.++..|..++..+....++++|+.++.+++
T Consensus 89 ~~~~~~l~~~~~~~i~~~-~~~~~~~~i~~~~~-----~~~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 162 (460)
T 3mkt_A 89 FEVHQGLILALLVSVPII-AVLFQTQFIIRFMD-----VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHTTCSSCS-----STTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 999999999999999888-99866999999962-----539999998764030100131267889987652045455315
Q ss_pred HHHHHHHHCHHHHHHHHHH-CCCCCCCCCCEEHHHHHHHHHHHHHCCCCCH-HHCCC----CCCCCCCCCCCCCCCHHHH
Q ss_conf 9999854010346777762-3568654432000122111011100023101-21036----5444567754324100013
Q gi|254780793|r 162 SIAPIVINVFPIFALTYAL-WHPSSPQETTYLLAWGVFLSNVVHFWIVYCC-AKNDG----VKLRFQYPRLTHNVKFFLK 235 (518)
Q Consensus 162 a~~~vi~ni~~i~~~~~~~-~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~k~~l~ 235 (518)
...++..++.++....... .....+..++.+.++++..+........... .++.. ...+..++...+..|++.+
T Consensus 163 ~~~~i~~~i~ni~l~~~li~g~~~~~~~~~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (460)
T 3mkt_A 163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred HHHHHHCCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCC
T ss_conf 76432113321221441011465566510789999988889998544677755300111112102102214566542133
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 468887643201202333202556-5566305777753321100000011123221002344443322367899989754
Q gi|254780793|r 236 LTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKNKQKSFELQNQAI 314 (518)
Q Consensus 236 ~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~ 314 (518)
.+.|..+..........+.+.+.+ .++.++++++.+.++.++.. .+..+++++.-|.+++++++||.++.++..++++
T Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~aa~~i~~~i~~~~~-~~~~~l~~a~~~~vg~~~G~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 578278899999999999999987268712259899999999999-9999999999999999872776899999999999
Q ss_pred HCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11344215899999852572311121047864455456666555420105677531232023544331013467778886
Q gi|254780793|r 315 ECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQNDMKAPMKFTIVSI 394 (518)
Q Consensus 315 ~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~~~~~~~~~~~~~ 394 (518)
+.....+++.+..++.+++++.. +|.. |++..+.....+.+++++.++.+.+......+++.||++.++..++++.
T Consensus 322 ~~~~~~~~~~~~l~~~~~~~i~~-~f~~---d~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~ 397 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIAL-LYTE---NQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISY 397 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-CSSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 84489999999999999999986-2689---8999999999999999999999999999999998674899999999999
Q ss_pred -HHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -89999987520-------21120049999999999999999999997
Q gi|254780793|r 395 -AINLTIAIGSF-------PFIGGYGIALAEVSSSWVNTICLAITLLK 434 (518)
Q Consensus 395 -~vni~l~~~li-------~~~G~~G~a~at~i~~~~~~~~~~~~l~k 434 (518)
++.+++.+++. +.+|..|++++..+++.+.++++.+.+++
T Consensus 398 ~~i~ip~~~~l~~~~~~~~~~~G~~Giw~~~~~~~~~~~~~~~~~l~~ 445 (460)
T 3mkt_A 398 WVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998523524469999999999999999999999999
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.90 E-value=8.1e-23 Score=135.82 Aligned_cols=241 Identities=14% Similarity=0.214 Sum_probs=189.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 754324100013468887643201202333202556-5566305777753321100000011123221002344443322
Q gi|254780793|r 224 PRLTHNVKFFLKLTFPLMVTGGIIQISNIVGRAIAS-RETGIISAIQYAERIYSLPVGVIGGAMMIVILPALSRSLRSKN 302 (518)
Q Consensus 224 ~~~~~~~k~~l~~~~p~~l~~~~~~i~~~i~~~~as-~~~g~vs~~~~a~~l~~l~~~i~~~ai~~~~~P~ls~~~~~~d 302 (518)
++.+++.|++++.+.|.++++...++..++|+.+.+ .++.+.++.+.+..+..+.. .+...++...-+.+||.+++||
T Consensus 5 ~~~~~~~k~l~~la~P~~~~~l~~~~~~~vD~~~vg~lg~~~laav~~~~~i~~~~~-~~~~gl~~g~~~lvaq~~G~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSI-LFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHH-HHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 799999999999999999999999999999999987528899999999999999999-9999999999999999973999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHH
Q ss_conf 36789998975411344215899999852572311121047864455456666555420105677531232023544331
Q gi|254780793|r 303 KQKSFELQNQAIECISFFGIPSAVALFMLSKEIVQTLYERGAFSSQNTILVSSFLSIYSIGILANILSKSLSTAFYAQND 382 (518)
Q Consensus 303 ~~~~~~~~~~~~~~~~~i~~p~~~~l~~~~~~ii~llf~~g~F~~~~~~~~~~~L~~~~~~~~~~~~~~i~~~~~~a~g~ 382 (518)
+++.++...+++.....++++..+.+. ..+++..++ + .+++....+...+.+..+++++..+.......+++.||
T Consensus 84 ~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~~~i~~~~-~---~~~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~l~~~g~ 158 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLF-QTQFIIRFM-D---VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL 158 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCSSC-S---STTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999999999999998889986-699999996-2---53999999876403010013126788998765204545
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCHHHHH
Q ss_conf 013467778886899999875202------112004999999999999999999999711----------5788988999
Q gi|254780793|r 383 MKAPMKFTIVSIAINLTIAIGSFP------FIGGYGIALAEVSSSWVNTICLAITLLKRK----------QINLPFKTIY 446 (518)
Q Consensus 383 ~~~~~~~~~~~~~vni~l~~~li~------~~G~~G~a~at~i~~~~~~~~~~~~l~k~~----------~~~~~~~~~~ 446 (518)
+|.+++.++.+.++|+.+|+.++. ..|..|.++|+.++.+...........++. ..+..++..+
T Consensus 159 ~~~~~~~~i~~~i~ni~l~~~li~g~~~~~~~~~~G~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (460)
T 3mkt_A 159 TKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELI 238 (460)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTT
T ss_pred CCHHHHHHHHCCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHH
T ss_conf 53157643211332122144101146556651078999998888999854467775530011111210210221456654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999865
Q gi|254780793|r 447 RILSVSISAGLMGFFIILFRPYFN 470 (518)
Q Consensus 447 ~~~~~~~~~~im~~~~~~~~~~~~ 470 (518)
+..+..++..+.............
T Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~ 262 (460)
T 3mkt_A 239 RLFRLGFPVAAALFFEVTLFAVVA 262 (460)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 213357827889999999999999
No 3
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=62.50 E-value=4.3 Score=15.88 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 978999999975778999999999998448978999
Q gi|254780793|r 46 YLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQ 81 (518)
Q Consensus 46 ~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~ 81 (518)
++..++..+..-|++.+..+|.+.++.++.+..++.
T Consensus 2 TLIELmvViaIigILaaiaiP~~~~~~~~ar~~~~~ 37 (144)
T 1oqw_A 2 TLIELMIVVAIIGILAAIAIPQYQNYVARSEGASAL 37 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 168999999999999999999999999999999999
No 4
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=33.23 E-value=15 Score=13.08 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999757789999999999984
Q gi|254780793|r 49 FIFRRLAAEGIFHNSFIPLFSQEKE 73 (518)
Q Consensus 49 ~~~~~l~~~G~~~~a~ip~~~~~~~ 73 (518)
.++..+..-|++.+..+|.+.++.+
T Consensus 5 ELlVVIaIIgILaaia~P~~~~~~~ 29 (158)
T 2hi2_A 5 ELMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999
No 5
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=2.70 E-value=2.6e+02 Score=6.48 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1123221002344443322367899989754113
Q gi|254780793|r 284 GAMMIVILPALSRSLRSKNKQKSFELQNQAIECI 317 (518)
Q Consensus 284 ~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~~ 317 (518)
.++...++|.+++.++. ...++++.++.++...
T Consensus 44 ~~itK~LYp~IA~k~~T-T~s~VERaIR~aI~~a 76 (120)
T 1fc3_A 44 GSITKVLYPDIAKKYNT-TASRVERAIRHAIEVA 76 (120)
T ss_dssp GGTTTTHHHHHHHHHTS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_conf 21588899999999798-8899999999999999
No 6
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=2.43 E-value=2.9e+02 Score=6.19 Aligned_cols=22 Identities=9% Similarity=0.338 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0023444433223678999897
Q gi|254780793|r 291 LPALSRSLRSKNKQKSFELQNQ 312 (518)
Q Consensus 291 ~P~ls~~~~~~d~~~~~~~~~~ 312 (518)
+|.+++.++.+|+..+-..+++
T Consensus 49 l~~IG~~fg~RdHsTV~ha~~k 70 (94)
T 1j1v_A 49 LPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHH
T ss_conf 9999999689984099999999
No 7
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=2.41 E-value=3e+02 Score=6.16 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 023444433223678999897541
Q gi|254780793|r 292 PALSRSLRSKNKQKSFELQNQAIE 315 (518)
Q Consensus 292 P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518)
|.+++. +.++|++.|+..++.++
T Consensus 614 PkL~KL-Gg~~W~k~K~Kvkk~v~ 636 (661)
T 2d7d_A 614 PKLSKM-TKKERQKVVEQMEHEMK 636 (661)
T ss_dssp ---------HHHHHHHHHHHHHHH
T ss_pred CCHHHC-CHHHHHHHHHHHHHHHH
T ss_conf 330014-99999999999999999
No 8
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens}
Probab=2.30 E-value=3.1e+02 Score=6.04 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 232210023444433223678999897541
Q gi|254780793|r 286 MMIVILPALSRSLRSKNKQKSFELQNQAIE 315 (518)
Q Consensus 286 i~~~~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518)
+.+..+|.++-=.+..+++++++.+.+.+.
T Consensus 120 ~~sIa~P~IG~G~~G~~w~~v~~ii~~~~~ 149 (160)
T 2jyc_A 120 VTDLSMPRIGCGLDRLQWENVSAMIEEVFE 149 (160)
T ss_dssp CCEEEEESCCSSCSSSCHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 976842112654679899999999999956
No 9
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.50.1.2 PDB: 2afc_A
Probab=2.28 E-value=3.2e+02 Score=6.01 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2210023444433223678999897541
Q gi|254780793|r 288 IVILPALSRSLRSKNKQKSFELQNQAIE 315 (518)
Q Consensus 288 ~~~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518)
++.+|.++-=.+..|++++++.+++.+.
T Consensus 120 sIa~P~IG~Gi~G~~w~~v~~ii~~~l~ 147 (158)
T 2fg1_A 120 SVHMPRIGCGLAGGKWELMEQIIKEELI 147 (158)
T ss_dssp EEEECCTTCSTTCCCHHHHHHHHHHHTG
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5997122688878899999999999983
No 10
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=2.19 E-value=3.3e+02 Score=5.90 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 232210023444433223678999897541
Q gi|254780793|r 286 MMIVILPALSRSLRSKNKQKSFELQNQAIE 315 (518)
Q Consensus 286 i~~~~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518)
+.+..+|.++-=....+++++++.+++.+.
T Consensus 109 ~~sIa~P~iG~G~~g~~~~~v~~ii~~~~~ 138 (149)
T 2eee_A 109 VTDLSMPRIGCGLDRLQWENVSAMIEEVFE 138 (149)
T ss_dssp CCEEECCCCCCTTTTCCHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 966985532676779899999999999856
Done!