Query gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus str. psy62] Match_columns 518 No_of_seqs 208 out of 3436 Neff 9.1 Searched_HMMs 13730 Date Wed Jun 1 07:05:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780793.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2pila_ d.24.1.1 (A:) Pilin Gc 53.8 3.8 0.00028 14.9 3.9 38 46-83 2-39 (158) 2 d1iwga8 f.35.1.1 (A:513-566,A: 4.9 72 0.0052 8.2 14.7 12 287-298 204-215 (222) 3 d1fc3a_ a.4.6.3 (A:) Spo0A {Ba 2.6 1.6E+02 0.011 6.4 2.0 32 284-316 44-75 (119) 4 d1j1va_ a.4.12.2 (A:) Chromoso 2.1 2E+02 0.015 5.8 1.7 23 290-312 48-70 (94) 5 d2fg1a1 c.50.1.2 (A:2-155) Hyp 2.0 2.1E+02 0.015 5.7 1.3 28 288-315 116-143 (154) 6 d1u5sb1 g.39.1.3 (B:72-102) Pi 1.8 1.7E+02 0.013 6.1 -0.8 15 372-386 15-29 (31) 7 d2jb0b1 d.4.1.1 (B:449-572) DN 1.6 2.7E+02 0.02 5.1 0.6 17 292-308 59-75 (124) 8 d1l8qa1 a.4.12.2 (A:290-399) C 1.5 2.9E+02 0.021 4.9 1.1 22 291-312 62-83 (110) 9 d1hyoa1 b.34.8.1 (A:1-118) Fum 1.5 3E+02 0.022 4.9 0.3 12 274-285 14-25 (118) 10 d2gykb1 d.4.1.1 (B:4-133) DNas 1.5 3E+02 0.022 4.9 0.8 17 292-308 62-78 (130) No 1 >d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]} Probab=53.78 E-value=3.8 Score=14.88 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 97899999997577899999999999844897899999 Q gi|254780793|r 46 YLTFIFRRLAAEGIFHNSFIPLFSQEKENNGSESAQRL 83 (518) Q Consensus 46 ~i~~~~~~l~~~G~~~~a~ip~~~~~~~~~~~~~~~~~ 83 (518) ++..++..+..-|++.+..+|.+.++.++.+..++... T Consensus 2 TLIELlVViaIIgILaaia~P~~~~~~~~a~~~~~~~~ 39 (158) T d2pila_ 2 TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILL 39 (158) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 21499999999999999999999999999999999999 No 2 >d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]} Probab=4.93 E-value=72 Score=8.17 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.5 Q ss_pred CCCCCHHHHHHH Q ss_conf 322100234444 Q gi|254780793|r 287 MIVILPALSRSL 298 (518) Q Consensus 287 ~~~~~P~ls~~~ 298 (518) +..+.|.+-... T Consensus 204 ~l~~~Pal~~l~ 215 (222) T d1iwga8 204 AIFFVPVFFVVV 215 (222) T ss_dssp TTSSSSSSHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 3 >d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Probab=2.59 E-value=1.6e+02 Score=6.36 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=21.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 112322100234444332236789998975411 Q gi|254780793|r 284 GAMMIVILPALSRSLRSKNKQKSFELQNQAIEC 316 (518) Q Consensus 284 ~ai~~~~~P~ls~~~~~~d~~~~~~~~~~~~~~ 316 (518) .++...++|.+++.+.. ...++++.++.++.. T Consensus 44 ~~itK~LYp~IA~ky~T-T~s~VERaIRhaIev 75 (119) T d1fc3a_ 44 GSITKVLYPDIAKKYNT-TASRVERAIRHAIEV 75 (119) T ss_dssp GGTTTTHHHHHHHHHTS-CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH T ss_conf 85899979999999599-879999999999999 No 4 >d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]} Probab=2.11 E-value=2e+02 Score=5.80 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=10.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10023444433223678999897 Q gi|254780793|r 290 ILPALSRSLRSKNKQKSFELQNQ 312 (518) Q Consensus 290 ~~P~ls~~~~~~d~~~~~~~~~~ 312 (518) .+|.+++.++.+|+..+-..+++ T Consensus 48 sl~~Ig~~fg~rdHsTV~~a~kk 70 (94) T d1j1va_ 48 SLPEIGDAFGGRDHTTVLHACRK 70 (94) T ss_dssp CHHHHHHHTTSCCHHHHHHHHHH T ss_pred CHHHHHHHHCCCCCHHHHHHHHH T ss_conf 99999999589970199999999 No 5 >d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=2.02 E-value=2.1e+02 Score=5.68 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=0.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210023444433223678999897541 Q gi|254780793|r 288 IVILPALSRSLRSKNKQKSFELQNQAIE 315 (518) Q Consensus 288 ~~~~P~ls~~~~~~d~~~~~~~~~~~~~ 315 (518) +..+|.++-=.+..|++++++.+++.+. T Consensus 116 sIa~P~Ig~Gi~G~~w~~v~~ii~~~~~ 143 (154) T d2fg1a1 116 SVHMPRIGCGLAGGKWELMEQIIKEELI 143 (154) T ss_dssp EEEECCTTCSTTCCCHHHHHHHHHHHTG T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 7996860688889899999999999961 No 6 >d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]} Probab=1.78 E-value=1.7e+02 Score=6.12 Aligned_cols=15 Identities=7% Similarity=-0.228 Sum_probs=0.0 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 320235443310134 Q gi|254780793|r 372 SLSTAFYAQNDMKAP 386 (518) Q Consensus 372 i~~~~~~a~g~~~~~ 386 (518) +..++..|+||++.| T Consensus 15 I~~~~vtAlgk~WHp 29 (31) T d1u5sb1 15 IEGRVVNAMGKQWHV 29 (31) T ss_dssp CCSCEECCTTSBEET T ss_pred HHHHHHHHHCCCCCC T ss_conf 163676640564678 No 7 >d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]} Probab=1.63 E-value=2.7e+02 Score=5.09 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 02344443322367899 Q gi|254780793|r 292 PALSRSLRSKNKQKSFE 308 (518) Q Consensus 292 P~ls~~~~~~d~~~~~~ 308 (518) |.+++.+.+.|..++++ T Consensus 59 peL~~QF~~~N~~rmk~ 75 (124) T d2jb0b1 59 PELSKQFSRNNNDRMKV 75 (124) T ss_dssp HHHHTTSCHHHHHHHHT T ss_pred HHHHHHHCHHHHHHHHC T ss_conf 99999858888999868 No 8 >d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]} Probab=1.54 E-value=2.9e+02 Score=4.93 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0023444433223678999897 Q gi|254780793|r 291 LPALSRSLRSKNKQKSFELQNQ 312 (518) Q Consensus 291 ~P~ls~~~~~~d~~~~~~~~~~ 312 (518) +|.+++.++.+|+..+-+..++ T Consensus 62 l~~IG~~fg~rdHsTV~~a~kk 83 (110) T d1l8qa1 62 LIEIARAFKRKDHTTVIHAIRS 83 (110) T ss_dssp HHHHHHHSSCCCSTHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHH T ss_conf 9999999589971099999999 No 9 >d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=1.52 E-value=3e+02 Score=4.90 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=0.0 Q ss_pred HHHCCCCCCCCC Q ss_conf 211000000111 Q gi|254780793|r 274 IYSLPVGVIGGA 285 (518) Q Consensus 274 l~~l~~~i~~~a 285 (518) +.++|+|+|... T Consensus 14 iqNLPfGVfs~~ 25 (118) T d1hyoa1 14 IQNLPYGVFSTQ 25 (118) T ss_dssp TTTCCEEEEECS T ss_pred CCCCCEEEEECC T ss_conf 656873888748 No 10 >d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]} Probab=1.51 E-value=3e+02 Score=4.88 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 02344443322367899 Q gi|254780793|r 292 PALSRSLRSKNKQKSFE 308 (518) Q Consensus 292 P~ls~~~~~~d~~~~~~ 308 (518) |.+++.+.+.|..++++ T Consensus 62 peL~~QF~~~N~~rmk~ 78 (130) T d2gykb1 62 PELSKNLNPSNKSSVSK 78 (130) T ss_dssp TTTGGGSCHHHHHHHHT T ss_pred HHHHHHHCHHHHHHHHC T ss_conf 99999858888999868 Done!