RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780793|ref|YP_003065206.1| integral membrane protein MviN
[Candidatus Liberibacter asiaticus str. psy62]
         (518 letters)



>d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic
           phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 415

 Score = 25.9 bits (56), Expect = 8.5
 Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 2/70 (2%)

Query: 417 EVSSSWVNTIC--LAITLLKRKQINLPFKTIYRILSVSISAGLMGFFIILFRPYFNQFSS 474
           ++   W   I         +   + LP        S  ++     F   +  P  N + +
Sbjct: 288 DLHLKWTEGIVNEFYEQGDEEANLGLPISPFMDRSSPQLAKLQESFITHIVGPLCNSYDA 347

Query: 475 ATTFFDPFKN 484
           A      +  
Sbjct: 348 AGLLPGQWLE 357


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.412 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,812,833
Number of extensions: 82639
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 11
Length of query: 518
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 429
Effective length of database: 1,185,626
Effective search space: 508633554
Effective search space used: 508633554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.2 bits)