HHsearch alignment for GI: 254780794 and conserved domain: PRK08560
>PRK08560 tyrosyl-tRNA synthetase; Validated.
Probab=100.00 E-value=0 Score=533.96 Aligned_cols=288 Identities=20% Similarity=0.214 Sum_probs=238.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 8887896015896781055798899999998505995899973115730-789858999999999999996286811123
Q gi|254780794|r 4 SDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAIT-NNIVQENLRYQSRLFVASFLAAGVDPSRNI 82 (355)
Q Consensus 4 ~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt-~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~ 82 (355)
T Consensus 29 ~~~rv~~G~~PTG~lHLGh~v~~~k-~~~lQd~-g~~~~~~IaD~hA~i~~~~~~~~~r~~~~~~~~~~~A~GlDp~k~~ 106 (333)
T PRK08560 29 EEPKAYIGFEPSGFIHLGHLVTMNK-LADLQKA-GFKVTVLLADWHAWLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE 106 (333)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHC-CCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 9988996617898453899999999-9999977-9918999613223338999999999999999999997078964239
Q ss_pred EEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHH
Q ss_conf 65247407889999998510536775201221123320111013466411114665435652866011121212689999
Q gi|254780794|r 83 IFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEIT 162 (355)
Q Consensus 83 if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hielt 162 (355)
T Consensus 107 i~~qS~~~~~~e~~~~~~~l~~~~tl~r~~~~~~~~~~~~~~~~~~g~~~YPvlQaaDil~~~adi~~~G~DQ~~~~~L~ 186 (333)
T PRK08560 107 FVLGSEFQLDPEYWLLVLKLAKNTTLARARRSMTIMGRKMEEPIDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKAHMLA 186 (333)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 99898624675699999998064739999887888755058997531231427765068752799553154308999999
Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999998761401100000123211134574314322347564303356774111321345544520014538899999
Q gi|254780794|r 163 RLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKK 242 (355)
Q Consensus 163 RdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~kK 242 (355)
T Consensus 187 Rdia~rf~~~~p-------------~~l~~p~l~---------gl~g~~~~~~~~KMSkS~~--~~~I~l~D~~~~i~kK 242 (333)
T PRK08560 187 REVLPKLGYKKP-------------VAIHTPLLT---------GLDGGGEVLAEIKMSKSKP--GSAIFVHDSPEEIRRK 242 (333)
T ss_pred HHHHHHCCCCCC-------------EEEECCCCC---------CCCCCCCCCCCCCCCCCCC--CCCEEECCCHHHHHHH
T ss_conf 999998399997-------------575257545---------6878777799886788999--9947415899999999
Q ss_pred HHHHHCCCCCCCCCC---------CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 875200122334643---------4556687634313311222225288899986--79998999899999999983379
Q gi|254780794|r 243 IQKAKTDGDVLPSEV---------SGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALADAVIEEIVPI 311 (355)
Q Consensus 243 I~ka~TDs~~~~~~~---------~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~--g~~~~gdlK~~Lae~I~~~L~PI 311 (355)
T Consensus 243 I~~a~~~~~~~~~npv~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~eel~~~y~~g~~~~~dlK~~lae~i~~~L~Pi 322 (333)
T PRK08560 243 IKKAYCPPGEVEGNPVLEIAKYHIFPEYDEIVIERPEKYGGDLEYESYEELERDYAEGKLHPLDLKNAVAEYLIEILEPV 322 (333)
T ss_pred HHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98565899876788731133468732666544035765067777688999999986599798999999999999987899
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780794|r 312 SQKIQH 317 (355)
Q Consensus 312 Rer~~~ 317 (355)
T Consensus 323 Re~~~e 328 (333)
T PRK08560 323 RKYLEE 328 (333)
T ss_pred HHHHHH
T ss_conf 999862