HHsearch alignment for GI: 254780794 and conserved domain: PRK12282
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed.
Probab=100.00 E-value=0 Score=815.33 Aligned_cols=328 Identities=31% Similarity=0.437 Sum_probs=302.2
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 888789601589678105579889999999850599589997311573078-9858999999999999996286811123
Q gi|254780794|r 4 SDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-IVQENLRYQSRLFVASFLAAGVDPSRNI 82 (355)
Q Consensus 4 ~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~-~~~~~~~~~~~~~~~~~lA~Gldp~k~~ 82 (355)
T Consensus 1 sk~~ilSGiqPTG~~HLGnylGai~~~v~lQ~~--~~~~~~IaDlHalT~~~~~~~~l~~~~~~~aa~~lA~GlDP~k~~ 78 (333)
T PRK12282 1 TKPIILTGDRPTGKLHLGHYVGSLKNRVALQNE--HKQFVLIADTQALTDNAHNPEKIRENILEVALDYLAVGIDPAKST 78 (333)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CCCEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 999788490878835488789999999999716--880799844788745899999999999999999997589856428
Q ss_pred EEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHH-HCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHH
Q ss_conf 6524740788999999851053677520122112332-011101346641111466543565286601112121268999
Q gi|254780794|r 83 IFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSK-ENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEI 161 (355)
Q Consensus 83 if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~-~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hiel 161 (355)
T Consensus 79 if~QS~v~eh~eL~w~l~~~~~~~~l~r~~~~K~k~~~~~~~~~i~~Gl~~YPvLmAADILly~a~~VPVG~DQ~qHlEL 158 (333)
T PRK12282 79 IFVQSQIPALAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQ 158 (333)
T ss_pred EEECCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 99737866889999999830848898734359999861288888763110376986020451378807666525999999
Q ss_pred HHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999876140110000012321113457431432234756430335677411132134554452001453889999
Q gi|254780794|r 162 TRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAK 241 (355)
Q Consensus 162 tRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~k 241 (355)
T Consensus 159 tRdiA~rfN~~yg~-----------------~~f~~P~~~~~~~-~ri~~L-dg~~KMSKS~~---n~I~L~D~~~~I~k 216 (333)
T PRK12282 159 TNEIVRRFNHTYGT-----------------DVLVEPEALLPEA-GRLPGL-DGKAKMSKSLG---NAIYLSDSADTIKK 216 (333)
T ss_pred HHHHHHHHHHHHCC-----------------CCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCC---CCEECCCCHHHHHH
T ss_conf 99999999987098-----------------6568862304545-667299-98501059999---96214489999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 987520012233464345566876343133112222-2528889998679998999899999999983379999999982
Q gi|254780794|r 242 KIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMR-QIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQHLLK 320 (355)
Q Consensus 242 KI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~-~~~~~e~~~~~g~~~~gdlK~~Lae~I~~~L~PIRer~~~l~~ 320 (355)
T Consensus 217 KI~ka~TDs~~~~~~dp~~~~~n~v~~~~~~~~~~~~~~~~~~~~y~~gg~g~g~~K~~Lae~v~~~l~pirek~~~l~~ 296 (333)
T PRK12282 217 KVMSMYTDPNHLRVEDPGQVEGNVVFTYLDAFDPDKAKVAELKAHYQRGGLGDVKTKRYLEDVLQEELAPIRERRAEFAK 296 (333)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98838689987767799987623699999996788889999999987189877999999999999997899999999980
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79999999999999999999999999999828899
Q gi|254780794|r 321 DKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355 (355)
Q Consensus 321 d~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl~y 355 (355)
T Consensus 297 d~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~~ 331 (333)
T PRK12282 297 DKGAVYDMLKEGSEKAREVAAQTLDEVKDAMGLNY 331 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999708867