HHsearch alignment for GI: 254780794 and conserved domain: PRK12285
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=421.12 Aligned_cols=288 Identities=24% Similarity=0.293 Sum_probs=237.0
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCC-CCHHHHHHHH-HHHHHHHHHCCCCCCCC
Q ss_conf 888789601589678105579889999999850599589997311573078-9858999999-99999999628681112
Q gi|254780794|r 4 SDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-IVQENLRYQS-RLFVASFLAAGVDPSRN 81 (355)
Q Consensus 4 ~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~-~~~~~~~~~~-~~~~~~~lA~Gldp~k~ 81 (355)
T Consensus 65 ~~f~lyTGrgPSg~mHlGH~i-pf~~~k~lQ~-fg~~l~I~iaDdEkfl~r~~t~ee~~~~a~eenikdiiAlGfdp~kT 142 (369)
T PRK12285 65 KPFAVYTGRMPSGKMHIGHKM-VFDQLKWFQE-FGADVYIQIADLEAYSARGMSLEETREIAIEEYILNYIALGFDPDKT 142 (369)
T ss_pred CCEEEEECCCCCCCCCCCHHH-HHHHHHHHHH-CCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 976999366888875520150-9999999998-79968999355799872799899999999998888898708780002
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHC-------CCCEEHHHH
Q ss_conf 3652474078899999985105367752012211233201110134664111146654356528-------660111212
Q gi|254780794|r 82 IIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYR-------ATHVPVGED 154 (355)
Q Consensus 82 ~if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~-------a~~VpVG~D 154 (355)
T Consensus 143 ~i~~~s~~~~~y~~~~~~~k~~t~~~~--------~~ifGf~~s~nig~i~~p~~Qaa~~~~p~~~~~~~~~cLiP~giD 214 (369)
T PRK12285 143 HIYFQSENIKVYDLAFELAKKVNFSEV--------KAIYGFTGSTNIGHIFAPATQAADILHPQLDEYGPKPVVVPVGID 214 (369)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHH--------HHHHCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf 899757637899999999998609999--------987099999963134301876312424354345886326540345
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12689999999999987614011000001232111345743143223475643033567741113213455445200145
Q gi|254780794|r 155 QRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLD 234 (355)
Q Consensus 155 Q~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D 234 (355)
T Consensus 215 QDP~fRltRDiA~r~~~~lg~---------~kPa~--------------ih~~flpgL~G--~KMSsS~p~--saI~ltD 267 (369)
T PRK12285 215 QDPHIRLTRDIAERMRISLGF---------IKPAS--------------TYHKFMTGLTG--GKMSSSKPE--SAIYLTD 267 (369)
T ss_pred CCHHHHHHHHHHHHHHHCCCC---------CCCHH--------------HHCCCCCCCCC--CCCCCCCCC--CEEEECC
T ss_conf 446889999888874011488---------87277--------------75114567788--987689998--5368508
Q ss_pred CHHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 388999998752001223346---434556687634313311222225288899986--799989998999999999833
Q gi|254780794|r 235 NPDIIAKKIQKAKTDGDVLPS---EVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALADAVIEEIV 309 (355)
Q Consensus 235 ~~e~I~kKI~ka~TDs~~~~~---~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~--g~~~~gdlK~~Lae~I~~~L~ 309 (355)
T Consensus 268 tp~~ikkKIk~AfSGGr~T~EEhr~~Gg~p~vdv~yq~~~~ff~eDD~~L~~i~~~y~~G~~l~Ge~K~~~ie~l~~~l~ 347 (369)
T PRK12285 268 DPETAKKKIKNALTGGRPTLEEQRKLGGNPEKCVVYELYLYHLIEDDKELKEIYEECRSGKLLCGECKREAAEKIQEFLK 347 (369)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999998542798779999985899851246899999814668999999998447865269999999999999999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 7999999998279999999999
Q gi|254780794|r 310 PISQKIQHLLKDKSYLDTILVE 331 (355)
Q Consensus 310 PIRer~~~l~~d~~~v~~IL~~ 331 (355)
T Consensus 348 ~hqekR~~~~---d~~~~~~~~ 366 (369)
T PRK12285 348 EHQEKREEAR---EKVDKYLYD 366 (369)
T ss_pred HHHHHHHHHH---HHHHHHCCC
T ss_conf 9999999989---999986457