HHsearch alignment for GI: 254780794 and conserved domain: PRK12285

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed.
Probab=100.00  E-value=0  Score=421.12  Aligned_cols=288  Identities=24%  Similarity=0.293  Sum_probs=237.0

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCC-CCHHHHHHHH-HHHHHHHHHCCCCCCCC
Q ss_conf             888789601589678105579889999999850599589997311573078-9858999999-99999999628681112
Q gi|254780794|r    4 SDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-IVQENLRYQS-RLFVASFLAAGVDPSRN   81 (355)
Q Consensus         4 ~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~-~~~~~~~~~~-~~~~~~~lA~Gldp~k~   81 (355)
T Consensus        65 ~~f~lyTGrgPSg~mHlGH~i-pf~~~k~lQ~-fg~~l~I~iaDdEkfl~r~~t~ee~~~~a~eenikdiiAlGfdp~kT  142 (369)
T PRK12285         65 KPFAVYTGRMPSGKMHIGHKM-VFDQLKWFQE-FGADVYIQIADLEAYSARGMSLEETREIAIEEYILNYIALGFDPDKT  142 (369)
T ss_pred             CCEEEEECCCCCCCCCCCHHH-HHHHHHHHHH-CCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             976999366888875520150-9999999998-79968999355799872799899999999998888898708780002


Q ss_pred             EEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHC-------CCCEEHHHH
Q ss_conf             3652474078899999985105367752012211233201110134664111146654356528-------660111212
Q gi|254780794|r   82 IIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYR-------ATHVPVGED  154 (355)
Q Consensus        82 ~if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~-------a~~VpVG~D  154 (355)
T Consensus       143 ~i~~~s~~~~~y~~~~~~~k~~t~~~~--------~~ifGf~~s~nig~i~~p~~Qaa~~~~p~~~~~~~~~cLiP~giD  214 (369)
T PRK12285        143 HIYFQSENIKVYDLAFELAKKVNFSEV--------KAIYGFTGSTNIGHIFAPATQAADILHPQLDEYGPKPVVVPVGID  214 (369)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHH--------HHHHCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf             899757637899999999998609999--------987099999963134301876312424354345886326540345


Q ss_pred             HHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12689999999999987614011000001232111345743143223475643033567741113213455445200145
Q gi|254780794|r  155 QRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLD  234 (355)
Q Consensus       155 Q~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D  234 (355)
T Consensus       215 QDP~fRltRDiA~r~~~~lg~---------~kPa~--------------ih~~flpgL~G--~KMSsS~p~--saI~ltD  267 (369)
T PRK12285        215 QDPHIRLTRDIAERMRISLGF---------IKPAS--------------TYHKFMTGLTG--GKMSSSKPE--SAIYLTD  267 (369)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC---------CCCHH--------------HHCCCCCCCCC--CCCCCCCCC--CEEEECC
T ss_conf             446889999888874011488---------87277--------------75114567788--987689998--5368508


Q ss_pred             CHHHHHHHHHHHHCCCCCCCC---CCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Q ss_conf             388999998752001223346---434556687634313311222225288899986--799989998999999999833
Q gi|254780794|r  235 NPDIIAKKIQKAKTDGDVLPS---EVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALADAVIEEIV  309 (355)
Q Consensus       235 ~~e~I~kKI~ka~TDs~~~~~---~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~--g~~~~gdlK~~Lae~I~~~L~  309 (355)
T Consensus       268 tp~~ikkKIk~AfSGGr~T~EEhr~~Gg~p~vdv~yq~~~~ff~eDD~~L~~i~~~y~~G~~l~Ge~K~~~ie~l~~~l~  347 (369)
T PRK12285        268 DPETAKKKIKNALTGGRPTLEEQRKLGGNPEKCVVYELYLYHLIEDDKELKEIYEECRSGKLLCGECKREAAEKIQEFLK  347 (369)
T ss_pred             CHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999999998542798779999985899851246899999814668999999998447865269999999999999999


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHH
Q ss_conf             7999999998279999999999
Q gi|254780794|r  310 PISQKIQHLLKDKSYLDTILVE  331 (355)
Q Consensus       310 PIRer~~~l~~d~~~v~~IL~~  331 (355)
T Consensus       348 ~hqekR~~~~---d~~~~~~~~  366 (369)
T PRK12285        348 EHQEKREEAR---EKVDKYLYD  366 (369)
T ss_pred             HHHHHHHHHH---HHHHHHCCC
T ss_conf             9999999989---999986457