HHsearch alignment for GI: 254780794 and conserved domain: PRK13354
>PRK13354 tyrosyl-tRNA synthetase; Provisional.
Probab=99.92 E-value=5.8e-23 Score=174.64 Aligned_cols=256 Identities=21% Similarity=0.253 Sum_probs=172.8
Q ss_pred CCEEEEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHH------HHHHHHHHHHHHHHH---C
Q ss_conf 8878960158967-81055798899999998505995899973115730789858------999999999999996---2
Q gi|254780794|r 5 DNLFVSGVQPTGV-LHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQE------NLRYQSRLFVASFLA---A 74 (355)
Q Consensus 5 ~~~vltG~~PtG~-~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~------~~~~~~~~~~~~~lA---~ 74 (355)
T Consensus 37 ~l~vy~GfDPTa~sLHlGhlv~-l~~L~~fq~~-Gh~~i~liGg~T~~IGDPSgk~~~R~~l~~e~i~~N~~~~~~q~~~ 114 (405)
T PRK13354 37 PLTLKLGLDPTAPDIHIGHLVV-LRKLKQFQDA-GHRAVILIGDFTGKIGDPTGKSKERKLLTDEQVQHNADTYTEQIFK 114 (405)
T ss_pred CEEEEEEECCCCCCCHHHHHHH-HHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4389995469988520764999-9999999986-9947999678654256999985456676799999999999999998
Q ss_pred CCCCCCCEEEECCCHHH-HHHHHH-HHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHH
Q ss_conf 86811123652474078-899999-9851053677520122112332011101346641111466543565286601112
Q gi|254780794|r 75 GVDPSRNIIFKQSDVGY-HADLSW-ILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVG 152 (355)
Q Consensus 75 Gldp~k~~if~QS~v~e-~~eL~~-~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG 152 (355)
T Consensus 115 ~ld~~~~~iv~N~~W~~~~~~~dfl~~g~~~~v~~mL~rd~v~~Rl--~~~~~is~~EF~Y~llQayD~~~L~~~iqiGG 192 (405)
T PRK13354 115 LLDKEKTEMVNNSDWLSKLNFIDVIDLGKKFTVARMLERDDFKKRL--ESDQGISFHEFFYPLLQAYDSVHLDADIELGG 192 (405)
T ss_pred HCCCCCCEEEEHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH--HCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 6366551786568766474456899986127299988478999998--47999368514678888864998688379950
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12126899999999999876140110000012321113457431432234756430335677411132134554452001
Q gi|254780794|r 153 EDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINL 232 (355)
Q Consensus 153 ~DQ~~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l 232 (355)
T Consensus 193 sDQ~gNi~~G~dL~r~~~~~~----------------~~~lT~PLL-----------~~~-dG~~KmgKS~g---naIwL 241 (405)
T PRK13354 193 TDQWFNILMGRDLQRKLGEEK----------------QVGITMPLL-----------EGL-DGTEKMSKSLG---NYIGL 241 (405)
T ss_pred HHHHHHHHHHHHHHHHHCCCC----------------CEEEEECCE-----------ECC-CCCCCCCCCCC---CCEEC
T ss_conf 868889997999999857898----------------359960615-----------788-77553250127---86314
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45388999998752001223346434556687634313311222225288899986-7999899989999999998337
Q gi|254780794|r 233 LDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF-GGKNFSQFKLALADAVIEEIVP 310 (355)
Q Consensus 233 ~D~~e~I~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~~~~-g~~~~gdlK~~Lae~I~~~L~P 310 (355)
T Consensus 242 d~sp~~~yq~~~n~-~D~~--------------v~~yl~l~T~l~~eeI~~l~~~~~~~~~~r~aKk~LA~Eit~lvHG 305 (405)
T PRK13354 242 DESPNEFYQKWMSI-PDRD--------------IVKYLELATDLHPEEIDEIAAQLETGKNPRDAKMILAEEITRFYHG 305 (405)
T ss_pred CCCHHHHHHHHHHC-CHHH--------------HHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 79889999999726-5588--------------9999999666999999999998522666105999999999998369