HHsearch alignment for GI: 254780794 and conserved domain: cd00672

>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.38  E-value=0.1  Score=31.55  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=33.0

Q ss_pred             EEEEECCCCCCCHHHHHHHHH-H-HHH-HHHHCCCCEEEE--EEEHH------HHCCCCCHHHH-HHHHHHHHHHHHHCC
Q ss_conf             896015896781055798899-9-999-985059958999--73115------73078985899-999999999999628
Q gi|254780794|r    8 FVSGVQPTGVLHLGNYLGMIR-N-VIR-RQETCNHLGMYF--IADLH------AITNNIVQENL-RYQSRLFVASFLAAG   75 (355)
Q Consensus         8 vltG~~PtG~~HLG~y~g~i~-~-~i~-lq~~~~~~~~~~--IAD~h------alt~~~~~~~~-~~~~~~~~~~~lA~G   75 (355)
T Consensus        24 Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~-~gy~V~~V~NITDIDDKII~~A~~~~~~~~ela~~y~~~f~~d~~~Ln  102 (213)
T cd00672          24 YVCGPTVYDYAHIGHARTYVVFDVLRRYLED-LGYKVRYVQNITDIDDKIIKRAREEGLSIKEVAEYYTAEFFEDMKALN  102 (213)
T ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9789968899876534257689999999996-399358999726751899999998399999999999999999999828


Q ss_pred             CCC
Q ss_conf             681
Q gi|254780794|r   76 VDP   78 (355)
Q Consensus        76 ldp   78 (355)
T Consensus       103 i~~  105 (213)
T cd00672         103 VLP  105 (213)
T ss_pred             CCC
T ss_conf             999