HHsearch alignment for GI: 254780794 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.38 E-value=0.1 Score=31.55 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=33.0
Q ss_pred EEEEECCCCCCCHHHHHHHHH-H-HHH-HHHHCCCCEEEE--EEEHH------HHCCCCCHHHH-HHHHHHHHHHHHHCC
Q ss_conf 896015896781055798899-9-999-985059958999--73115------73078985899-999999999999628
Q gi|254780794|r 8 FVSGVQPTGVLHLGNYLGMIR-N-VIR-RQETCNHLGMYF--IADLH------AITNNIVQENL-RYQSRLFVASFLAAG 75 (355)
Q Consensus 8 vltG~~PtG~~HLG~y~g~i~-~-~i~-lq~~~~~~~~~~--IAD~h------alt~~~~~~~~-~~~~~~~~~~~lA~G 75 (355)
T Consensus 24 Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~-~gy~V~~V~NITDIDDKII~~A~~~~~~~~ela~~y~~~f~~d~~~Ln 102 (213)
T cd00672 24 YVCGPTVYDYAHIGHARTYVVFDVLRRYLED-LGYKVRYVQNITDIDDKIIKRAREEGLSIKEVAEYYTAEFFEDMKALN 102 (213)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9789968899876534257689999999996-399358999726751899999998399999999999999999999828
Q ss_pred CCC
Q ss_conf 681
Q gi|254780794|r 76 VDP 78 (355)
Q Consensus 76 ldp 78 (355)
T Consensus 103 i~~ 105 (213)
T cd00672 103 VLP 105 (213)
T ss_pred CCC
T ss_conf 999