HHsearch alignment for GI: 254780794 and conserved domain: cd00802
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.63 E-value=1.1e-15 Score=125.70 Aligned_cols=111 Identities=28% Similarity=0.248 Sum_probs=77.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 78960158967810557988999999985059958999731157307898589999999999999962868111236524
Q gi|254780794|r 7 LFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFVASFLAAGVDPSRNIIFKQ 86 (355)
Q Consensus 7 ~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~if~Q 86 (355)
T Consensus 2 i~~~~p~ptG~lHiGh~~~~~~~~~~ar~-~~~~~~~~idd~~~~~~~~a~~~---------------~~~~~~------ 59 (142)
T cd00802 2 ITRPGPYPTGPLHIGHARTALLNDVLARY-GNVLFILGIDDTGLPIEDKAEKE---------------GKLPKE------ 59 (142)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCHHHHH---------------CCCCHH------
T ss_conf 14148898996418899999999999998-19989998657992001167884---------------448899------
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCC------CCEEHHHHHHHHHH
Q ss_conf 740788999999851053677520122112332011101346641111466543565286------60111212126899
Q gi|254780794|r 87 SDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRA------THVPVGEDQRQHLE 160 (355)
Q Consensus 87 S~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a------~~VpVG~DQ~~Hie 160 (355)
T Consensus 60 --------------------~~~~~~---~~~---------~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~G~D~~~~~~ 107 (142)
T cd00802 60 --------------------EVEENI---EEI---------KEDLKYWFDSAADDLLLLGYPFYPVDLVLGGKDQIPHLE 107 (142)
T ss_pred --------------------HHHHHH---HHH---------HHHCEECCCEEECHHHHCCCCCCCCCEEEECCCCCCCCH
T ss_conf --------------------999999---999---------986526340164348754667887657886621014769
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999987
Q gi|254780794|r 161 ITRLIAQRFNT 171 (355)
Q Consensus 161 ltRdiA~rfN~ 171 (355)
T Consensus 108 ~~~~~~~~l~~ 118 (142)
T cd00802 108 LTRDLLKALGG 118 (142)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998377