HHsearch alignment for GI: 254780794 and conserved domain: cd00806

>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00  E-value=0  Score=584.24  Aligned_cols=276  Identities=46%  Similarity=0.670  Sum_probs=244.7

Q ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             87896015896781055798899999998505995899973115730789-85899999999999999628681112365
Q gi|254780794|r    6 NLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI-VQENLRYQSRLFVASFLAAGVDPSRNIIF   84 (355)
Q Consensus         6 ~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~-~~~~~~~~~~~~~~~~lA~Gldp~k~~if   84 (355)
T Consensus         1 ~rv~tG~~PTG~~HlG~~v~~~k~~~~~~~--g~~~~i~iaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~Dp~k~~i~   78 (282)
T cd00806           1 FRVLSGIQPSGSLHLGHYLGAIRNWVLQQE--GYELFFFIADLHALTVKQSDPEELRQNTRENAADYLACGLDPEKSTIF   78 (282)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf             925757798971478889999999999978--991999980438886799999999999999999999919888890899


Q ss_pred             ECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
Q ss_conf             24740788999999851053677520122112332011101346641111466543565286601112121268999999
Q gi|254780794|r   85 KQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRL  164 (355)
Q Consensus        85 ~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~HieltRd  164 (355)
T Consensus        79 ~qS~~~~~~el~~~l~~~~t~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~d~vp~G~DQ~~h~~laRd  157 (282)
T cd00806          79 FQSDVPEHYELAWLLSCVVTFGELERMTGFKDKSNKQ-KLSIPIGLLTYPVLQAADILLYQADLVPVGEDQDPHLELTRD  157 (282)
T ss_pred             EECCCHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHC-CCCCCCHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             8374278999999998432199997321023456522-578762534053988878466256505222047999999999


Q ss_pred             HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999876140110000012321113457431432234756430335677411132134554452001453889999987
Q gi|254780794|r  165 IAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQ  244 (355)
Q Consensus       165 iA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~kKI~  244 (355)
T Consensus       158 ia~k~n~~~~~------------------~~~~P~~~~~~-~~~i~~l~~g~~KMSKS~~n--s~I~l~D~p~~I~kKI~  216 (282)
T cd00806         158 IARRFNKLYGE------------------IFPKPEALISK-GARIPSLTGPSKKMSKSDPN--TIIFLLDSPKTIKKKIM  216 (282)
T ss_pred             HHHHHHHHCCC------------------CCCCCHHHCCC-CCCCCCCCCCCCCCCCCCCC--CCEEECCCHHHHHHHHE
T ss_conf             99998655065------------------34664110155-55166788976755568999--74454176899997512


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC---CHHHHH--HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             52001223346434556687634313311222225---288899--9867999899989999999998
Q gi|254780794|r  245 KAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQI---KIEEAL--KQFGGKNFSQFKLALADAVIEE  307 (355)
Q Consensus       245 ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~---~~~e~~--~~~g~~~~gdlK~~Lae~I~~~  307 (355)
T Consensus       217 ka~td~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~y~~G~i~~g~~K~~l~e~i~e~  282 (282)
T cd00806         217 KAVTDGGRTR--EYREGGGPGESNLVEIYLAFFNEDDEELEEIYAGYRSGELGYGECKKLLAEAIQEF  282 (282)
T ss_pred             EEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             6226999764--66778999624199999998788999999999765247978799999999999729