HHsearch alignment for GI: 254780794 and conserved domain: cd00806
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=0 Score=584.24 Aligned_cols=276 Identities=46% Similarity=0.670 Sum_probs=244.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 87896015896781055798899999998505995899973115730789-85899999999999999628681112365
Q gi|254780794|r 6 NLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI-VQENLRYQSRLFVASFLAAGVDPSRNIIF 84 (355)
Q Consensus 6 ~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~-~~~~~~~~~~~~~~~~lA~Gldp~k~~if 84 (355)
T Consensus 1 ~rv~tG~~PTG~~HlG~~v~~~k~~~~~~~--g~~~~i~iaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~Dp~k~~i~ 78 (282)
T cd00806 1 FRVLSGIQPSGSLHLGHYLGAIRNWVLQQE--GYELFFFIADLHALTVKQSDPEELRQNTRENAADYLACGLDPEKSTIF 78 (282)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEE
T ss_conf 925757798971478889999999999978--991999980438886799999999999999999999919888890899
Q ss_pred ECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHH
Q ss_conf 24740788999999851053677520122112332011101346641111466543565286601112121268999999
Q gi|254780794|r 85 KQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRL 164 (355)
Q Consensus 85 ~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~HieltRd 164 (355)
T Consensus 79 ~qS~~~~~~el~~~l~~~~t~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~d~vp~G~DQ~~h~~laRd 157 (282)
T cd00806 79 FQSDVPEHYELAWLLSCVVTFGELERMTGFKDKSNKQ-KLSIPIGLLTYPVLQAADILLYQADLVPVGEDQDPHLELTRD 157 (282)
T ss_pred EECCCHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHC-CCCCCCHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 8374278999999998432199997321023456522-578762534053988878466256505222047999999999
Q ss_pred HHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999876140110000012321113457431432234756430335677411132134554452001453889999987
Q gi|254780794|r 165 IAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQ 244 (355)
Q Consensus 165 iA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~kKI~ 244 (355)
T Consensus 158 ia~k~n~~~~~------------------~~~~P~~~~~~-~~~i~~l~~g~~KMSKS~~n--s~I~l~D~p~~I~kKI~ 216 (282)
T cd00806 158 IARRFNKLYGE------------------IFPKPEALISK-GARIPSLTGPSKKMSKSDPN--TIIFLLDSPKTIKKKIM 216 (282)
T ss_pred HHHHHHHHCCC------------------CCCCCHHHCCC-CCCCCCCCCCCCCCCCCCCC--CCEEECCCHHHHHHHHE
T ss_conf 99998655065------------------34664110155-55166788976755568999--74454176899997512
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC---CHHHHH--HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 52001223346434556687634313311222225---288899--9867999899989999999998
Q gi|254780794|r 245 KAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQI---KIEEAL--KQFGGKNFSQFKLALADAVIEE 307 (355)
Q Consensus 245 ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~---~~~e~~--~~~g~~~~gdlK~~Lae~I~~~ 307 (355)
T Consensus 217 ka~td~~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~y~~G~i~~g~~K~~l~e~i~e~ 282 (282)
T cd00806 217 KAVTDGGRTR--EYREGGGPGESNLVEIYLAFFNEDDEELEEIYAGYRSGELGYGECKKLLAEAIQEF 282 (282)
T ss_pred EEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 6226999764--66778999624199999998788999999999765247978799999999999729