HHsearch alignment for GI: 254780794 and conserved domain: pfam00579
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=100.00 E-value=0 Score=428.39 Aligned_cols=278 Identities=34% Similarity=0.418 Sum_probs=219.7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCC---HHHHHH--HHHHHHHHHHHCCCC
Q ss_conf 888878960158967810557988999999985059958999731157307898---589999--999999999962868
Q gi|254780794|r 3 SSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV---QENLRY--QSRLFVASFLAAGVD 77 (355)
Q Consensus 3 ~~~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~---~~~~~~--~~~~~~~~~lA~Gld 77 (355)
T Consensus 3 ~k~~~vy~G~~PTg~lHlGh-l~~~~~~~~lq~~-g~~~~~liad~~a~~~d~~~~~~~~~~~~~~~~~n~~~~ia~g~d 80 (291)
T pfam00579 3 ERPLRVYTGFDPTGPLHLGY-LVPLMKLVQFQQA-GHEVFFLIGDLTAIIGDPSKSEERKLLSREEVLENAKAQLACGLD 80 (291)
T ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHHHHHHHHC-CCCEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99818997348896307798-9999999999978-990999973833133498963577751489999999999984778
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHH-HHCCCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHH
Q ss_conf 11123652474078899999985105367752012211233-20111013466411114665435652866011121212
Q gi|254780794|r 78 PSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKS-KENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQR 156 (355)
Q Consensus 78 p~k~~if~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~-~~~~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~ 156 (355)
T Consensus 81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~r~~~~~~~~~~~~~YP~lQa~D~~~l~~~i~~gG~DQ~ 160 (291)
T pfam00579 81 PEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFKDVKKRLKQNPGISLGEFTYPLLQAADILLLKADLQPGGSDQW 160 (291)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHCCCHHCCCCCCCCCCCHH
T ss_conf 22159997501562003999999873424476664048798764257887665501521763230001467566560048
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 68999999999998761401100000123211134574314322347564303356774111321345544520014538
Q gi|254780794|r 157 QHLEITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP 236 (355)
Q Consensus 157 ~HieltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~ 236 (355)
T Consensus 161 ~~~~l~rdl~~k~~~~~---------------------~~~p~~l~---~~ll~~~~-G~~KMSKS~~n--saI~L~d~~ 213 (291)
T pfam00579 161 GHIELGRDLARRFNKKV---------------------FKKPVGLT---NPLLTGLD-GGKKMSKSAGN--SAIFLDDEK 213 (291)
T ss_pred HHHHHHHHHHHHHCCCC---------------------CCCCEEEE---CCCCCCCC-CCCCCCCCCCC--CEEECCCCH
T ss_conf 99999999999957856---------------------78834874---16622667-87663678999--726667986
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC-CCCCC-CCCCHHHHCC-CCCCCCHHHHH--HHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999987520012233464345-56687-6343133112-22225288899--986799989998999999999833
Q gi|254780794|r 237 DIIAKKIQKAKTDGDVLPSEVSG-LENRL-EAKNLIEIFA-TMRQIKIEEAL--KQFGGKNFSQFKLALADAVIEEIV 309 (355)
Q Consensus 237 e~I~kKI~ka~TDs~~~~~~~~~-~~~~~-~v~~Ll~ifs-~~~~~~~~e~~--~~~g~~~~gdlK~~Lae~I~~~L~ 309 (355)
T Consensus 214 ~~i~~ki~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~vh~~d~K~~~~e~~~~~le 291 (291)
T pfam00579 214 ESVYKKIQKAYTDPDREVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDLKKAAAEAVNALLE 291 (291)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 789999851027873457887754588999999999986589998999999999998381879999999999999849