HHsearch alignment for GI: 254780794 and conserved domain: pfam09334
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=96.38 E-value=0.03 Score=35.24 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHH--HHHHHHHCCCCEEEEEEE--HHHHC-------CCCCHHHHH-HHHHHHHHHHHHCCCCCCC
Q ss_conf 58967810557988999--999985059958999731--15730-------789858999-9999999999962868111
Q gi|254780794|r 13 QPTGVLHLGNYLGMIRN--VIRRQETCNHLGMYFIAD--LHAIT-------NNIVQENLR-YQSRLFVASFLAAGVDPSR 80 (355)
Q Consensus 13 ~PtG~~HLG~y~g~i~~--~i~lq~~~~~~~~~~IAD--~halt-------~~~~~~~~~-~~~~~~~~~~lA~Gldp~k 80 (355)
T Consensus 9 ~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~-v~g~D~~g~~i~~ka~~~g~~~~e~~~~y~~~~~~~~~~lgi~~D~ 87 (388)
T pfam09334 9 YVNGPPHIGHLYTTIPADVYARYLRLRGYDVLF-VTGTDEHGTKIELAAEKEGVTPQELVDRYHEEFKELFKKFNISFDD 87 (388)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE-CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 888860022418899999999999956997071-3864853799999999849999999999999999999983996787
Q ss_pred CEEEECCCHHHHHHHH-HHHHHC
Q ss_conf 2365247407889999-998510
Q gi|254780794|r 81 NIIFKQSDVGYHADLS-WILSCV 102 (355)
Q Consensus 81 ~~if~QS~v~e~~eL~-~~l~~~ 102 (355)
T Consensus 88 ---~~~t~~~~~~~~v~~~f~~L 107 (388)
T pfam09334 88 ---FIRTTSERHKELVQEFFLKL 107 (388)
T ss_pred ---CCCCCCHHHHHHHHHHHHHH
T ss_conf ---86579846899999998751