HHsearch results for GI: 254780794 and protein with PDBid: 2yy5_A

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129}
Probab=100.00  E-value=0  Score=651.96  Aligned_cols=327  Identities=32%  Similarity=0.488  Sum_probs=287.6

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             88789601589678105579889999999850599589997311573078985899999999999999628681112365
Q gi|254780794|r    5 DNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFVASFLAAGVDPSRNIIF   84 (355)
Q Consensus         5 ~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~if   84 (355)
                      ++|||||++|||++|||||+|+|++|+.||+.  ++|+||||||||||++.++.++++++++++++|+|||+||+++++|
T Consensus         4 ~~rv~tG~~PSG~~HLGh~i~~i~~~~~lQ~~--~~~~i~IAD~ha~~~~~~~~~~~~~~~~~~~~~la~g~dp~~~~~~   81 (348)
T 2yy5_A            4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQ--CQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLF   81 (348)
T ss_dssp             CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             56046683789705677699999999999666--9889997318776169989999999999999999817885552797


Q ss_pred             ECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHC-----CCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHH
Q ss_conf             2474078899999985105367752012211233201-----11013466411114665435652866011121212689
Q gi|254780794|r   85 KQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKEN-----KEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHL  159 (355)
Q Consensus        85 ~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~-----~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hi  159 (355)
                      +||++++|.||+|++++++++++|+|+++|+++....     +.+++++|+|+||+|||||||++++++||||.||+||+
T Consensus        82 ~qs~~~~~~el~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDil~~~~~~vp~G~DQ~~~~  161 (348)
T 2yy5_A           82 LQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHL  161 (348)
T ss_dssp             EGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHH
T ss_pred             ECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHCCHHHHCCCCCCCCCCHHHHH
T ss_conf             30335006889999833278899999887666664300244555564324104816752022641788787872189999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99999999998761401100000123211134574314322347564303356774111321345544520014538899
Q gi|254780794|r  160 EITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDII  239 (355)
Q Consensus       160 eltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I  239 (355)
                      |||||||+|||+.|+..                  +++|...+.....+++++.+|+.|||||..+++|+|+|+|+|++|
T Consensus       162 ~ltRdia~kfn~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~kS~~~~~s~I~l~D~~~~I  223 (348)
T 2yy5_A          162 ELTRDLAQRIQKKFKLK------------------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVV  223 (348)
T ss_dssp             HHHHHHHHHHHHHHCCC------------------CCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHH
T ss_pred             HHHHHHHHHHCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH
T ss_conf             99999987502344544------------------567732123320013567688767776678988668843878889


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHH---------HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9998752001223346434556687634313311222225288---------8999867999899989999999998337
Q gi|254780794|r  240 AKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIE---------EALKQFGGKNFSQFKLALADAVIEEIVP  310 (355)
Q Consensus       240 ~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~---------e~~~~~g~~~~gdlK~~Lae~I~~~L~P  310 (355)
                      ++||++|+|||....  ..+.+.+|++++++.+|..+......         +.+..+++.+|||||+.|+|+|+++|+|
T Consensus       224 ~kKI~ka~td~~~~~--~~~~~~~p~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdlK~~lae~l~~~l~p  301 (348)
T 2yy5_A          224 VKKIRQATTDSFNKI--RFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVN  301 (348)
T ss_dssp             HHHHHTCCCCSSCCC--SCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             998873567998884--246667886574898999983660344577776568998876777999999999999999879


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999998279999999999999999999999999999828899
Q gi|254780794|r  311 ISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH  355 (355)
Q Consensus       311 IRer~~~l~~d~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl~y  355 (355)
                      ||+||+++.+  ++|++||++|++|||++|++||++||++|||++
T Consensus       302 ir~k~~~l~~--d~v~~iL~~G~~kAr~~A~~tl~~vr~~~Gl~~  344 (348)
T 2yy5_A          302 IQRKREQISR--EQVFNCLQAGKNQAQATARTTLALFYDGFGLGS  344 (348)
T ss_dssp             HHHHHHSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSG
T ss_pred             HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999998775--899999999999999999999999999639988