HHsearch results for GI: 254780794 and protein with PDBid: 2yy5_A
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129}
Probab=100.00 E-value=0 Score=651.96 Aligned_cols=327 Identities=32% Similarity=0.488 Sum_probs=287.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 88789601589678105579889999999850599589997311573078985899999999999999628681112365
Q gi|254780794|r 5 DNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFVASFLAAGVDPSRNIIF 84 (355)
Q Consensus 5 ~~~vltG~~PtG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~~~~~~~~~~~~~~~~~~~lA~Gldp~k~~if 84 (355)
++|||||++|||++|||||+|+|++|+.||+. ++|+||||||||||++.++.++++++++++++|+|||+||+++++|
T Consensus 4 ~~rv~tG~~PSG~~HLGh~i~~i~~~~~lQ~~--~~~~i~IAD~ha~~~~~~~~~~~~~~~~~~~~~la~g~dp~~~~~~ 81 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQ--CQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLF 81 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 56046683789705677699999999999666--9889997318776169989999999999999999817885552797
Q ss_pred ECCCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHC-----CCHHHHHHHHCCHHHHHHHHHHHCCCCEEHHHHHHHHH
Q ss_conf 2474078899999985105367752012211233201-----11013466411114665435652866011121212689
Q gi|254780794|r 85 KQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKEN-----KEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHL 159 (355)
Q Consensus 85 ~QS~v~e~~eL~~~l~~~~~~~~l~r~~~~k~~~~~~-----~~~~~~~g~~~YP~lqaADIl~~~a~~VpVG~DQ~~Hi 159 (355)
+||++++|.||+|++++++++++|+|+++|+++.... +.+++++|+|+||+|||||||++++++||||.||+||+
T Consensus 82 ~qs~~~~~~el~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~YP~lQaaDil~~~~~~vp~G~DQ~~~~ 161 (348)
T 2yy5_A 82 LQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHL 161 (348)
T ss_dssp EGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHH
T ss_pred ECCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHCCHHHHCCCCCCCCCCHHHHH
T ss_conf 30335006889999833278899999887666664300244555564324104816752022641788787872189999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99999999998761401100000123211134574314322347564303356774111321345544520014538899
Q gi|254780794|r 160 EITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDII 239 (355)
Q Consensus 160 eltRdiA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I 239 (355)
|||||||+|||+.|+.. +++|...+.....+++++.+|+.|||||..+++|+|+|+|+|++|
T Consensus 162 ~ltRdia~kfn~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~kS~~~~~s~I~l~D~~~~I 223 (348)
T 2yy5_A 162 ELTRDLAQRIQKKFKLK------------------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVV 223 (348)
T ss_dssp HHHHHHHHHHHHHHCCC------------------CCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHH
T ss_pred HHHHHHHHHHCCCCCCC------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH
T ss_conf 99999987502344544------------------567732123320013567688767776678988668843878889
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHH---------HHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9998752001223346434556687634313311222225288---------8999867999899989999999998337
Q gi|254780794|r 240 AKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIE---------EALKQFGGKNFSQFKLALADAVIEEIVP 310 (355)
Q Consensus 240 ~kKI~ka~TDs~~~~~~~~~~~~~~~v~~Ll~ifs~~~~~~~~---------e~~~~~g~~~~gdlK~~Lae~I~~~L~P 310 (355)
++||++|+|||.... ..+.+.+|++++++.+|..+...... +.+..+++.+|||||+.|+|+|+++|+|
T Consensus 224 ~kKI~ka~td~~~~~--~~~~~~~p~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdlK~~lae~l~~~l~p 301 (348)
T 2yy5_A 224 VKKIRQATTDSFNKI--RFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVN 301 (348)
T ss_dssp HHHHHTCCCCSSCCC--SCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 998873567998884--246667886574898999983660344577776568998876777999999999999999879
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998279999999999999999999999999999828899
Q gi|254780794|r 311 ISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355 (355)
Q Consensus 311 IRer~~~l~~d~~~v~~IL~~Ga~kAr~~A~~tl~~Vr~~iGl~y 355 (355)
||+||+++.+ ++|++||++|++|||++|++||++||++|||++
T Consensus 302 ir~k~~~l~~--d~v~~iL~~G~~kAr~~A~~tl~~vr~~~Gl~~ 344 (348)
T 2yy5_A 302 IQRKREQISR--EQVFNCLQAGKNQAQATARTTLALFYDGFGLGS 344 (348)
T ss_dssp HHHHHHSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSG
T ss_pred HHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999998775--899999999999999999999999999639988