HHsearch results for GI: 254780794 and protein with PDBid: 3foc_A
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=0 Score=509.17 Aligned_cols=285 Identities=18% Similarity=0.210 Sum_probs=239.3
Q ss_pred CCCEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCC-CC-CHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88878960158-967810557988999999985059958999731157307-89-8589999999999999962868111
Q gi|254780794|r 4 SDNLFVSGVQP-TGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITN-NI-VQENLRYQSRLFVASFLAAGVDPSR 80 (355)
Q Consensus 4 ~~~~vltG~~P-tG~~HLG~y~g~i~~~i~lq~~~~~~~~~~IAD~halt~-~~-~~~~~~~~~~~~~~~~lA~Gldp~k 80 (355)
.+..|+||++| ||.+|||||+|+++.|. +|+.+++.++|+|||+|+.++ +. +++++++++++++++||||||||+|
T Consensus 90 ~pf~v~tG~~PsSG~~HLGh~~~~~~~~~-lQd~~~~~~~i~iaD~ea~~~~~~~~~e~~~~~~~e~~~~~iA~G~Dp~k 168 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY-LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDK 168 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH-HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHH-HHHCCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98499979889989753999999999999-98757997899972478840488999999999999999999995779023
Q ss_pred CEEEECCCHHHH---HHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHC------------
Q ss_conf 236524740788---99999985105367752012211233201110134664111146654356528------------
Q gi|254780794|r 81 NIIFKQSDVGYH---ADLSWILSCVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYR------------ 145 (355)
Q Consensus 81 ~~if~QS~v~e~---~eL~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~g~~~YP~lqaADIl~~~------------ 145 (355)
|+||+||+++++ .+|.|.+++.+++++++|+.+ +++++|+|+++||++||||||+++
T Consensus 169 t~if~qS~~~~v~~~~~l~~~l~~~~t~~el~~~~g--------f~~~~nig~~~yP~~Qaadil~~~~~~~~~~~~~vp 240 (451)
T 3foc_A 169 TFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFG--------FSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLP 240 (451)
T ss_dssp EEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHC--------CCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHCC--------CCCCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 399991600313789999999957056446766205--------687775641145076542343202334576643444
Q ss_pred -----------------------------------------------CCCEEHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf -----------------------------------------------660111212126899999999999876140110
Q gi|254780794|r 146 -----------------------------------------------ATHVPVGEDQRQHLEITRLIAQRFNTEFERKIK 178 (355)
Q Consensus 146 -----------------------------------------------a~~VpVG~DQ~~HieltRdiA~rfN~~yg~~~~ 178 (355)
+++||||.||+||+|||||||+|||..++.
T Consensus 241 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvp~G~DQ~~~~~ltRdia~r~~~~~p~--- 317 (451)
T 3foc_A 241 VGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNA--- 317 (451)
T ss_dssp -------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCE---
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCE---
T ss_conf 21255678888766543113321001024677666653001221011220136457899999999999983899880---
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCCCCC---C
Q ss_conf 0000123211134574314322347564303356774111321345544520014538899999875-20012233---4
Q gi|254780794|r 179 EVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQK-AKTDGDVL---P 254 (355)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~ri~~L~~~~~KMSKS~~~~~s~I~l~D~~e~I~kKI~k-a~TDs~~~---~ 254 (355)
. ..+.++|||+++++|||||+|+ |+|+|+|+|++|++|||| |+|++..+ +
T Consensus 318 ---------------------~---~~~~~lpgL~G~~~KMSkS~pn--S~I~L~D~pe~I~kKI~k~A~tgg~~t~ee~ 371 (451)
T 3foc_A 318 ---------------------Y---LLGKFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINRYAFSGGRDTEEEH 371 (451)
T ss_dssp ---------------------E---EEECCCCBTTBTTCCCCTTCGG--GSCBTTCCHHHHHHHHHHHSCCCSCSSHHHH
T ss_pred ---------------------E---EECCCCCCCCCCCCCCCCCCCC--CEEEECCCHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf ---------------------2---5037766778987765678998--6334058989999988644038998865300
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 6434556687634313311222225288899--98679998999899999999983379999999982799999999
Q gi|254780794|r 255 SEVSGLENRLEAKNLIEIFATMRQIKIEEAL--KQFGGKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTIL 329 (355)
Q Consensus 255 ~~~~~~~~~~~v~~Ll~ifs~~~~~~~~e~~--~~~g~~~~gdlK~~Lae~I~~~L~PIRer~~~l~~d~~~v~~IL 329 (355)
++.+|+++.|.+++++.+|.. ++.+.+++. |..|+++||+||+.|+|.|+++|+|+||||+++.+ +.|++.+
T Consensus 372 r~~gg~p~~~~~~~~l~~f~~-dD~~leei~~~y~~G~l~~ge~K~~lae~l~~~L~~~qerr~~~~~--e~v~~f~ 445 (451)
T 3foc_A 372 RAFGADLSVDVSVRYLEVFMK-DDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT--TMIESFT 445 (451)
T ss_dssp HTTCCCTTTCHHHHHHHHHCC-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHC
T ss_conf 104999663069999999849-9358999999986389898999999999999998999999999988--7899852