RPSBLAST alignment of GI: 254780794 and protein with PDBid: 3n9i

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346
 Score =  310 bits (796), Expect = 2e-85
 Identities = 134/345 (38%), Positives = 195/345 (56%), Gaps = 21/345 (6%)

Query: 9   VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
            SG QP+G L +GNY+G +R  ++ Q+  +   +Y I DLHAIT       LR ++   +
Sbjct: 19  FSGAQPSGELTIGNYMGALRQWVQMQDDYD--CIYCIVDLHAITARQDPALLRKRTLDTL 76

Query: 69  ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
           A +LA G+DP ++ IF QS V  H+ LSW L+C    G ++ M QFK+KS    E   + 
Sbjct: 77  ALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYAEN-INA 135

Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
           GLF YPVLMAADILLY+   VPVGEDQ+QHLE++R IA RFN  +               
Sbjct: 136 GLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLY--------------- 180

Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
                 F I E  I  + +R+ SL+D +KKMSKSD +  + I LL++P  + KKI++A T
Sbjct: 181 ---GDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMT 237

Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308
           D D        +E +    NL++I + +    I E   QF G+ +   K A+ADAV   +
Sbjct: 238 DSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGML 297

Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
             + ++ +   +D++ L  ++ EGA +AR RAQ T+  V E +G 
Sbjct: 298 SELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGF 342