RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(355 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 310 bits (796), Expect = 2e-85
Identities = 134/345 (38%), Positives = 195/345 (56%), Gaps = 21/345 (6%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
SG QP+G L +GNY+G +R ++ Q+ + +Y I DLHAIT LR ++ +
Sbjct: 19 FSGAQPSGELTIGNYMGALRQWVQMQDDYD--CIYCIVDLHAITARQDPALLRKRTLDTL 76
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
A +LA G+DP ++ IF QS V H+ LSW L+C G ++ M QFK+KS E +
Sbjct: 77 ALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYAEN-INA 135
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
GLF YPVLMAADILLY+ VPVGEDQ+QHLE++R IA RFN +
Sbjct: 136 GLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNLY--------------- 180
Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
F I E I + +R+ SL+D +KKMSKSD + + I LL++P + KKI++A T
Sbjct: 181 ---GDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMT 237
Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308
D D +E + NL++I + + I E QF G+ + K A+ADAV +
Sbjct: 238 DSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGML 297
Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
+ ++ + +D++ L ++ EGA +AR RAQ T+ V E +G
Sbjct: 298 SELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGF 342
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid,
aminoacyl-tRNA synthetase, ATP- binding, cytoplasm,
ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Length = 322
Score = 276 bits (706), Expect = 6e-75
Identities = 111/345 (32%), Positives = 169/345 (48%), Gaps = 29/345 (8%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
++G+QP+G LH+GNY G I+ ++ QE FIA+ HA+T++ E L+ S
Sbjct: 7 LTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMF--MFIANYHAMTSSQDGEKLKQNSLKAA 64
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
A+FL+ G+DP +++ + QSDV +L WILS MG + +K+K + +AS
Sbjct: 65 AAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASH 122
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
GLF YPVLMAADILL+ VPVG+DQ QH+EI R IA + N E+
Sbjct: 123 GLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW--------------- 167
Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
F + E ++ + + KMSKS + I++ + + K+I T
Sbjct: 168 ---GEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN---TIDIFSSEKTLKKQISSIVT 219
Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308
D L + ++F K + + GG+ + FK+ L + V
Sbjct: 220 DSTALEDP--KDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYF 277
Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
+K LL+ S+L IL GA +AR AQE M+ + E +GL
Sbjct: 278 KEAREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A
Length = 328
Score = 243 bits (621), Expect = 4e-65
Identities = 134/346 (38%), Positives = 188/346 (54%), Gaps = 25/346 (7%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
SG+QP+GV+ +GNY+G +R + Q N + I D HAIT LR R
Sbjct: 5 FSGIQPSGVITIGNYIGALRQFVELQHEYNCY--FCIVDQHAITVWQDPHELRQNIRRLA 62
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
A +LA G+DP++ +F QS+V HA +W+L C+ +G + M QFKEKS + S
Sbjct: 63 ALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEA--VSA 120
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
GL YP LMAADILLY VPVGEDQ+QH+E+TR +A+RFN +
Sbjct: 121 GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------- 167
Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
F I E I +RI SL D +KKMSKSD + + I LLD+ I KKI+ A T
Sbjct: 168 -----LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVT 222
Query: 249 DGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEI 308
D + E + NL+ I++T+ IEE +Q+ GK + FK LA VIE +
Sbjct: 223 DSEGTIRYD--KEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETL 280
Query: 309 VPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLS 354
PI ++ H ++ + LD +L EGA +A A E ++ + + +GL
Sbjct: 281 RPIQERYHHWMESE-ELDRVLDEGAEKANRVASEMVRKMEQAMGLG 325
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae M129}
Length = 348
Score = 217 bits (554), Expect = 2e-57
Identities = 108/359 (30%), Positives = 177/359 (49%), Gaps = 34/359 (9%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLFV 68
++G+Q +G HLGNYLG+++++I QE C F+ADLH+IT + + L+ + V
Sbjct: 8 LTGIQASGKQHLGNYLGVMQSLIELQEQCQLF--VFVADLHSITVDFQPQALKQNNFDLV 65
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENK-----E 123
+ LA G+DP + +F QSD+ H+ + +++ + +G + M QFK K E
Sbjct: 66 RTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGT 125
Query: 124 ETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQK 183
GL YP LMA DILLY+ VPVG DQ+QHLE+TR +AQR +F+ K
Sbjct: 126 LNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK------- 178
Query: 184 YAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKI 243
+ + + + +RI L D +KKMSKS + I L D +++ KKI
Sbjct: 179 -----------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKI 227
Query: 244 QKAKTDGDVLPS-------EVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQF 296
++A TD V+ + L+A + ++ + F K++
Sbjct: 228 RQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDL 287
Query: 297 KLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355
K AL +A + +V I +K + + ++ + L G N+A+ A+ T+ + GL
Sbjct: 288 KNALTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGFGLGS 344
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural genomics, NPPSFA; 2.50A {Thermus
thermophilus HB8}
Length = 337
Score = 201 bits (512), Expect = 2e-52
Identities = 117/347 (33%), Positives = 171/347 (49%), Gaps = 26/347 (7%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQEN--LRYQSRL 66
+SG+QP+G +H+GNYLG I+ + E + I D HA+TN + + L ++
Sbjct: 5 LSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFE 64
Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126
+AAG+DP + +F QS V H +LSW+ + + +G + M QFK+K+ + + T
Sbjct: 65 AALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQE--TV 122
Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186
GL MYPVL AADIL+Y+A VPVGEDQ QH+E+TR IA+RFN F E
Sbjct: 123 WSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNP 182
Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246
E P + G+ +K S + I LL+ + I +KIQ
Sbjct: 183 E-------APRVPGIDG---------------KAKMSKSLGNTIGLLEPEESIWQKIQHL 220
Query: 247 KTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLALADAVIE 306
D + G R + FA ++ + + G K L D ++E
Sbjct: 221 PDDPQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLME 280
Query: 307 EIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
+ PI ++ + L KD Y+ L+EGA RAR AQ TM+ V E VGL
Sbjct: 281 ALRPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGL 327
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 200 bits (508), Expect = 5e-52
Identities = 90/348 (25%), Positives = 145/348 (41%), Gaps = 28/348 (8%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLF 67
++G +PTG LHLG+ G ++N +R Q+ +AD+ A+T++ + E +R
Sbjct: 26 LTGDRPTGALHLGHLAGSLQNRVRLQDEAELF--VLLADVQALTDHFDRPEQVRENVLAV 83
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE-ETA 126
+LAAG+DP + QS V A+L+ + + + K + + E
Sbjct: 84 ALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERV 143
Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186
G F+YPV AADI + AT VPVG+DQ LE TR I +RFN + +
Sbjct: 144 PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVL--------A 195
Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246
E Q P + GL +K S + I L D+ D +A+K+
Sbjct: 196 EPQAQLSRVPRLPGL---------------DGQAKMSKSLGNAIALGDSADEVARKVMGM 240
Query: 247 KTDGDVLPSEVSGLENRLEAKNLIEIFATMRQ-IKIEEALKQFGGKNFSQFKLALADAVI 305
TD L + G ++ F ++ + + GG + K L D +
Sbjct: 241 YTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLN 300
Query: 306 EEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
+ PI + +D + + EG R R A +T+ V + L
Sbjct: 301 GVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL 348
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima}
Length = 340
Score = 198 bits (503), Expect = 2e-51
Identities = 97/348 (27%), Positives = 162/348 (46%), Gaps = 28/348 (8%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI-VQENLRYQSRLF 67
+SG++PTG LH+G+ +G + N ++ QE + YF+AD HA+T + L+ +R
Sbjct: 16 LSGMRPTGKLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDL 74
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE-NKEETA 126
V FLA G+DP +++IF QS V HA+L+ + S + + + + +KE E N ++ +
Sbjct: 75 VRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLS 134
Query: 127 SLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQ 186
+ G +YPVL AADIL+Y+A VPVGEDQ H+E+TR IA+RFN ++ E ++
Sbjct: 135 TAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSR 194
Query: 187 EEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKA 246
+ K S + INL + + + I +
Sbjct: 195 VPKLP------------------------GTDGRKMSKSYGNIINLEISEKELEQTILRM 230
Query: 247 KTDGDVLPSEVSGLENRLEAKNLIEIFATM-RQIKIEEALKQFGGKNFSQFKLALADAVI 305
TD + G + F + K K L +
Sbjct: 231 MTDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMK 290
Query: 306 EEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGL 353
++ PI + + + +D Y+D +++EG +AR A +TM+ V + L
Sbjct: 291 RKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNL 338
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus
horikoshii OT3}
Length = 375
Score = 190 bits (484), Expect = 3e-49
Identities = 59/344 (17%), Positives = 119/344 (34%), Gaps = 31/344 (9%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN--------IVQENLR 61
G + +G +HLG L + Q+ F+AD H+ N+ I + L+
Sbjct: 38 IGFEISGYIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLGGDLEVIQEVALK 96
Query: 62 YQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKEN 121
Y S G DP + S++ D + +++ ++ +++
Sbjct: 97 YFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQ 156
Query: 122 KEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVA 181
E +YP++ ADI T G DQR+ I +AQ+ E
Sbjct: 157 MGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGE-- 214
Query: 182 QKYAQEEQYSKGFFPIIEGLIDSSASRI---RSLRDASKKMSKSDSSDFSRINLLDNPDI 238
+ + ++ GL + I ++ +M S S +S + + D+P+
Sbjct: 215 -----KLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEE 269
Query: 239 IAKKIQKAKTDGDVLPSE----------VSGLENRLEAKNLIEIFATMRQIKIEEALKQF 288
I +K++KA + + + EE + F
Sbjct: 270 IRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDF 329
Query: 289 --GGKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILV 330
G + K A+A+ +I + PI + + + + ++ +
Sbjct: 330 AEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSVKI 373
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognition domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 186 bits (474), Expect = 5e-48
Identities = 57/371 (15%), Positives = 114/371 (30%), Gaps = 56/371 (15%)
Query: 1 MLSSDNLFV-SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN----- 54
+L L + G TG H+ ++ M + + ADLHA +N
Sbjct: 30 ILKERELKIYWGTATTGKPHVAYFVPMSKIADFLK--AGCEVTILFADLHAYLDNMKAPW 87
Query: 55 -IVQENLRYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQ 113
+++ + Y + A + GV + K +D + + + ++ + ++ +
Sbjct: 88 ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKK 147
Query: 114 FKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEF 173
+ + E L +YP L A D + G DQR+
Sbjct: 148 AGAEVVKQVEHP-LLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYS- 205
Query: 174 ERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLL 233
+ S S + S+I+LL
Sbjct: 206 ----------------KRVHLMNP--------------MVPGLTGSKMSSSEEESKIDLL 235
Query: 234 DNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIK---------IEEA 284
D + + KK++KA + + + + L F +R K +
Sbjct: 236 DRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDL 295
Query: 285 LKQFGGKNFS--QFKLALADAVIEEIVPISQKIQ----HLLKDKSYLDTILVEGANRARC 338
K F + K ++ A+ + + PI +K L +Y D + +
Sbjct: 296 EKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYPDPSKQKPMAKGPA 355
Query: 339 RAQETMKYVNE 349
+ E + + E
Sbjct: 356 KNSEPEEVILE 366
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 177 bits (451), Expect = 2e-45
Identities = 53/356 (14%), Positives = 104/356 (29%), Gaps = 64/356 (17%)
Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ--ENLRYQSRL 66
+G P+ LH+G+ + + + + + D E +
Sbjct: 79 TGRGPSSESLHVGHLVPFLFTKYLQDT-FKVPLVIQLTDDEKFIFKSNLTLEETHNYAYE 137
Query: 67 FVASFLAAGVDPSRNIIFKQSD-VGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEET 125
+ +A G DP IF + + + + ++ FK+
Sbjct: 138 NMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSC------- 190
Query: 126 ASLGLFMYPVLMAADILLYRA-----------THVPVGEDQRQHLEITRLIAQRFNTEFE 174
++G F +P + AA VP DQ + + R +A R
Sbjct: 191 -NVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKP 249
Query: 175 RKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLD 234
I + L+ + KMS S S I + D
Sbjct: 250 SSI----------------HSIFLPS-----------LQGSQTKMSASV--QNSSIFVND 280
Query: 235 NPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATM---RQIKIEEALKQF--G 289
N + I KI K G E ++ + K+EE K++ G
Sbjct: 281 NEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSG 340
Query: 290 GKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMK 345
+ K L +++ + + + D ++ + N++R + +
Sbjct: 341 EMLSGEIKSILVQELVKLTKNHQKNREAINDD------VIAKFTNKSREQLLKLFI 390
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, anticodon recognition domain,
bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens}
SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 171 bits (433), Expect = 3e-43
Identities = 59/337 (17%), Positives = 106/337 (31%), Gaps = 54/337 (16%)
Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRL-F 67
+G P+ +H+G+ + I Q+ N + + D + + Y +
Sbjct: 113 TGRGPSSEAMHVGHLIPFIFTK-WLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVEN 171
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127
+A G D ++ IF D Y S V ++ Q K ++
Sbjct: 172 AKDIIACGFDINKTFIFSDLD--YMGMSSGFYKNVVKIQKHVTFNQVKGIFG--FTDSDC 227
Query: 128 LGLFMYPVLMAADILLY-----------RATHVPVGEDQRQHLEITRLIAQRFNTEFERK 176
+G +P + AA +P DQ + +TR +A R
Sbjct: 228 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------ 281
Query: 177 IKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP 236
P + ++ +L+ A KMS SD S I L D
Sbjct: 282 ----------------YPKPAL-----LHSTFFPALQGAQTKMSASD--PNSSIFLTDTA 318
Query: 237 DIIAKKIQKAKTDGDVLPSEVS---GLENRLEAKNLIEIFATMRQIKIEEALKQF--GGK 291
I K+ K G E G ++ + F K+E+ K + G
Sbjct: 319 KQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAM 378
Query: 292 NFSQFKLALADAVIEEIVPISQKIQHLLKD--KSYLD 326
+ K AL + + I + + + + K ++
Sbjct: 379 LTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMT 415
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, anticodon recognition domain,
bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens}
SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A*
2quj_A* 2quk_A
Length = 477
Score = 171 bits (433), Expect = 3e-43
Identities = 57/337 (16%), Positives = 99/337 (29%), Gaps = 54/337 (16%)
Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRL-F 67
+G P+ +H+G+ + I Q+ N + + D + + Y +
Sbjct: 160 TGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVEN 218
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127
+A G D ++ IF D Y S V ++ Q K ++
Sbjct: 219 AKDIIACGFDINKTFIFSDLD--YMGMSSGFYKNVVKIQKHVTFNQVKGIFG--FTDSDC 274
Query: 128 LGLFMYPVLMAADILLY-----------RATHVPVGEDQRQHLEITRLIAQRFNTEFERK 176
+G +P + AA +P DQ + +TR +A R
Sbjct: 275 IGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPAL 334
Query: 177 IKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNP 236
+ L+ A KMS SD S I L D
Sbjct: 335 LHSTFFPA---------------------------LQGAQTKMSASD--PNSSIFLTDTA 365
Query: 237 DIIAKKIQKAKTDGDVLPSEVSG-LENRLEAKNLIEI--FATMRQIKIEEALKQF--GGK 291
I K+ K G E + F K+E+ K + G
Sbjct: 366 KQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAM 425
Query: 292 NFSQFKLALADAVIEEIVPISQKIQHLLKD--KSYLD 326
+ K AL + + I + + + + K ++
Sbjct: 426 LTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMT 462
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis,
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 166 bits (420), Expect = 9e-42
Identities = 55/351 (15%), Positives = 103/351 (29%), Gaps = 46/351 (13%)
Query: 10 SGVQP-TGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV-QENLRYQSRLF 67
+G P +G LHLG+ L I + ++ + D + N + + +R
Sbjct: 96 TGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTREN 155
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127
+ +A G DP + IF S + V RM ++ + ++ A+
Sbjct: 156 IKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQL-----RASFGFSNDAN 210
Query: 128 LGLFMYPVLMAADILLYRATH-------VPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180
+G +P + +PVG + T + +
Sbjct: 211 VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSP 270
Query: 181 AQKYAQEEQYSKGF---FPIIEGLIDSSA----------------------SRIRSLRDA 215
+ SK + +I I+ + L+ +
Sbjct: 271 VHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGS 330
Query: 216 SKKMSKSDSSDFSRINLLDNPDIIAKKIQKA-KTDGDVLPSEVSGLENRLEAKNLIEIFA 274
KMS SD S I L D P I KI + + G E L +
Sbjct: 331 GTKMSASD--PNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLE 388
Query: 275 TM--RQIKIEEALKQF--GGKNFSQFKLALADAVIEEIVPISQKIQHLLKD 321
++E+ + G + K L + I +++ +
Sbjct: 389 VFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT 439
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural genomics of pathogenic protozoa,
MSGPP; 3.00A {Entamoeba histolytica}
Length = 386
Score = 165 bits (418), Expect = 2e-41
Identities = 49/338 (14%), Positives = 97/338 (28%), Gaps = 59/338 (17%)
Query: 9 VSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-IVQENLRYQSRLF 67
P + L Y+ + Q+ N + I D + N S
Sbjct: 86 FIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDL 144
Query: 68 VASFLAAGVDPSRNIIFKQSD-VGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126
+ LA G + + I+ G ++ + F+
Sbjct: 145 MKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSD-------- 196
Query: 127 SLGLFMYPVLMAADILLYRATH---------VPVGEDQRQHLEITRLIAQRFNTEFERKI 177
++G P +M A + +H V Q I IA N +
Sbjct: 197 NIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVL 256
Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237
++ L K SD + I L DN
Sbjct: 257 F----------------------------HKMVPLLSGVTKFDI--PSDHNSILLSDNAK 286
Query: 238 IIAKKIQKAKTDGD----VLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGK 291
+ +KI K G ++ G + + L+ IF++ ++++ +++ G
Sbjct: 287 QVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNA-QVKDVEEKYSKGEL 345
Query: 292 NFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTIL 329
+ K ++ ++ + IV K + + YL +
Sbjct: 346 LSGELKKIVSASMKDFIVAYDAKKKPITTA--YLKAYI 381
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A*
Length = 314
Score = 164 bits (417), Expect = 2e-41
Identities = 58/315 (18%), Positives = 107/315 (33%), Gaps = 50/315 (15%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLFV 68
G +P+G +HLG+YL I+ +I Q + +ADL A N + + +R
Sbjct: 33 IGFEPSGKIHLGHYLQ-IKKMIDLQNA-GFDIIILLADLAAYLNQKGELDEIRKIGDYNK 90
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
F A G+ S+ D + + +A + + E ++E +
Sbjct: 91 KVFEAMGLKA---KYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL-IAREDENPKV 146
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
+YP++ G +QR+ + R + +
Sbjct: 147 AEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLPKKVVCI--------------- 191
Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
P++ GL K SS + I + D+P+ I KI+KA
Sbjct: 192 -----HNPVLTGLD---------------GEGKMSSSKGNFIAVDDSPEEIRAKIKKAYC 231
Query: 249 DGD------VLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLAL 300
++ LE L K + + EE F + K A+
Sbjct: 232 PAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAV 291
Query: 301 ADAVIEEIVPISQKI 315
A+ +I+ + PI +++
Sbjct: 292 AEELIKILEPIRKRL 306
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae}
Length = 432
Score = 155 bits (393), Expect = 1e-38
Identities = 50/362 (13%), Positives = 108/362 (29%), Gaps = 58/362 (16%)
Query: 10 SGVQPTGV-LHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ--ENLRYQSRL 66
+G P+ +HLG+ + + ++ + + D +++ +R
Sbjct: 107 TGRGPSSDSMHLGHMIPFVFTKWLQEVFDVP-LVIELTDDEKFLFKHKLTINDVKNFARE 165
Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETA 126
+A G DP IF A ++ ++ F +
Sbjct: 166 NAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC----- 220
Query: 127 SLGLFMYPVLMAADILLY-----------RATHVPVGEDQRQHLEITRLIAQRFNTEFER 175
+G F + + A +P DQ + + R +A +
Sbjct: 221 -IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPA 279
Query: 176 KIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDN 235
+ +L+ ++ KMS SD D + I + D
Sbjct: 280 LLHS---------------------------RFFPALQGSTTKMSASD--DTTAIFMTDT 310
Query: 236 PDIIAKKIQKAKTDGDVLPSEVSG-LENRLEAKNLIEIFA--TMRQIKIEEALKQF--GG 290
P I KKI K G + +++ L + + + + ++E ++ G
Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGE 370
Query: 291 KNFSQFKLALADAVIEEIVPISQKIQHLLK---DKSYLDTILVEGANRARCRAQETMKYV 347
+ K + + E + ++ + + DK + LV G + K
Sbjct: 371 LLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQE 430
Query: 348 NE 349
+
Sbjct: 431 KK 432
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 155 bits (392), Expect = 2e-38
Identities = 60/365 (16%), Positives = 111/365 (30%), Gaps = 62/365 (16%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI------VQENLRYQ 63
G PTG H G ++ M + + C +ADLHA +N+ V +Y
Sbjct: 44 WGTAPTGRPHCGYFVPMTKLADFLKAGCE--VTVLLADLHAFLDNMKAPLEVVNYRAKYY 101
Query: 64 SRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE 123
A + V + S D + + ++ + N+ + +
Sbjct: 102 ELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGAD-VVKQV 160
Query: 124 ETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQK 183
L +YP++ A D G DQR+ + + +
Sbjct: 161 ANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHL------ 214
Query: 184 YAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKI 243
P++ G KMS SD + +I+LL+ P + KKI
Sbjct: 215 ----------MNPMVPG------------LAQGGKMSASDPNS--KIDLLEEPKQVKKKI 250
Query: 244 QKAKTDGDVLP--SEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFS------- 294
A + +S ++ + ++ + I+ K G +
Sbjct: 251 NSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKL 310
Query: 295 ----------QFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETM 344
K+ +ADA+ E + PI Q+ + +G A + +
Sbjct: 311 AFKEEKLSPPDLKIGVADAINELLEPIRQE----FANNKEFQEASEKGYPVATPQKSKKA 366
Query: 345 KYVNE 349
K
Sbjct: 367 KKPKN 371
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 151 bits (381), Expect = 3e-37
Identities = 51/348 (14%), Positives = 106/348 (30%), Gaps = 59/348 (16%)
Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ-ENLRYQSRLF 67
+G P+ +H+G+ + + Q++ + + D + E + +
Sbjct: 83 TGRGPSSESMHMGHLIPFMFTK-WLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTEN 141
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127
+ +A G DP IF+ D + + VA++ Q + E +
Sbjct: 142 IKDIIAMGFDPELTFIFRDFDY-----MGCMYRTVAKIERAFTASQVRGCFGFAME--DN 194
Query: 128 LGLFMYPVLMAADILLY------------RATHVPVGEDQRQHLEITRLIAQRFNTEFER 175
G +M+P + AA +P DQ + +TR IA R
Sbjct: 195 CGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKP- 253
Query: 176 KIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDN 235
+ L KMS S + + L D
Sbjct: 254 --------------------------AVIHSKFFPGLSGPKGKMSSSSGTA---VLLTDT 284
Query: 236 PDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATM---RQIKIEEALKQF--GG 290
++ KI K G + L ++ + + ++ K++ G
Sbjct: 285 EKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGR 344
Query: 291 KNFSQFKLALADAVIEEIVPISQKIQHLLKD--KSYLDTILVEGANRA 336
+ K L + + +K + + + + + T ++ A +A
Sbjct: 345 IMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKA 392
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 148 bits (375), Expect = 1e-36
Identities = 66/344 (19%), Positives = 119/344 (34%), Gaps = 40/344 (11%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV---QENLRYQSRL 66
G +P+GV H+G + M + + A HA N+ + + +R +R+
Sbjct: 40 IGYEPSGVAHIGWLVWMYKVKDLVE--AGVDFSVLEATWHAYINDKLGGDMDLIRAAARI 97
Query: 67 FVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKE-ET 125
AAGV R ++ D ++ VA+ + + + E
Sbjct: 98 VRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAE 157
Query: 126 ASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYA 185
+YP++ +DI G DQR+ + R +A++ + I
Sbjct: 158 VDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAI-------- 209
Query: 186 QEEQYSKGFFPIIEGL----IDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAK 241
PII L ++ A KMSKS + + ++D+ D I +
Sbjct: 210 --------HTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSK--PETAVFVVDSDDDIRR 259
Query: 242 KIQKAKTDG------DVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF------G 289
KI+KA VL L R ++ A + ++ G
Sbjct: 260 KIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDG 319
Query: 290 GKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVEGA 333
+ K A+A+++IE + PI + K L+ I +
Sbjct: 320 RLHPLDLKNAVAESLIEVVRPIRGAVLGDPAMKRALEAIEGKVT 363
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 138 bits (348), Expect = 2e-33
Identities = 52/344 (15%), Positives = 104/344 (30%), Gaps = 45/344 (13%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQ--ENLRYQSRLF 67
+G P+G +H+G+ + +++ +L I D ++ + +
Sbjct: 78 TGRGPSGPMHIGHIIPFFATKWLQEKFGVNL-YIQITDDEKFLFKENLTFDDTKRWAYDN 136
Query: 68 VASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETAS 127
+ +A G DP + IF+ S+ +++ ++ + F E+SK
Sbjct: 137 ILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMI---- 192
Query: 128 LGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQE 187
F + +A + +P DQ + + R A+ +
Sbjct: 193 ---FFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHS-------- 241
Query: 188 EQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAK 247
+ SL S KMS S + D+P+ + KK+ K
Sbjct: 242 -------------------KFVPSLTSLSGKMSASKPETAIYLT--DSPEDVEKKVWKFT 280
Query: 248 TDGDVLPSEV----SGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFKLALA 301
G + G + +EIF K++E G + K L
Sbjct: 281 LTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLI 340
Query: 302 DAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMK 345
+ E + ++ + K E +K
Sbjct: 341 SKIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLK 384
>2j5b_A Tyrosyl-tRNA synthetase; tyrosynol, ligase; HET: TYB; 2.2A
{Mimivirus}
Length = 348
Score = 133 bits (335), Expect = 6e-32
Identities = 53/331 (16%), Positives = 103/331 (31%), Gaps = 47/331 (14%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIV---QENLRYQSRL 66
+G +P+G +H+ L + N E C + +IAD A N + +R R
Sbjct: 45 NGFEPSGRIHIAQALITVMNTNNMIE-CGGQMIIYIADWFAKMNLKMNGDINKIRELGRY 103
Query: 67 FVASFLAAGVDPSRNIIFKQSD----VGYHADLSWILSCVARMGWMNNMIQFKEKSKENK 122
F+ F A G++ S+ + + ++ + + + Q +++ +
Sbjct: 104 FIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDC 163
Query: 123 EETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQ 182
YP + AAD+ VP G D Q R + + ++
Sbjct: 164 L---KASQIFYPCMQAADVF----ELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPI 216
Query: 183 KYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKK 242
+ S K S S I + D +++K
Sbjct: 217 SLSHHMLMSLSG----------------------PKKKMSKSDPQGAIFMDDTEQEVSEK 254
Query: 243 IQKAKTDGDVLPSEVSG-----LENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFK 297
I +A + + + L NL T IE + F N + K
Sbjct: 255 ISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCGKIYT----DIESIQEDFSSMNKRELK 310
Query: 298 LALADAVIEEIVPISQKIQHLLKDKSYLDTI 328
+A+ + I + + + + L +
Sbjct: 311 TDVANYINTIIDLVREHFKKPELSE-LLSNV 340
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 91.3 bits (225), Expect = 3e-19
Identities = 60/319 (18%), Positives = 114/319 (35%), Gaps = 47/319 (14%)
Query: 10 SGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNI-VQENLRYQSRLFV 68
G +P+G +HLG+ + ++ ++ QE + +AD+HA N E + +
Sbjct: 37 VGYEPSGEIHLGHMMT-VQKLMDLQE-AGFEIIVLLADIHAYLNEKGTFEEIAEVADYNK 94
Query: 69 ASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKENKEETASL 128
F+A G+D SR S+ D + +AR+ +N + ++ KE+
Sbjct: 95 KVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMV- 153
Query: 129 GLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEVAQKYAQEE 188
+YP++ A DI G DQR+ + R R
Sbjct: 154 SQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSS--------------- 198
Query: 189 QYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIAKKIQKAKT 248
PI+ GL K SS + I++ D P+ + +KI+KA
Sbjct: 199 -PVCLHTPILVGLD----------------GQKMSSSKGNYISVRDPPEEVERKIRKAYC 241
Query: 249 DG---------DVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQF--GGKNFSQFK 297
D+ + ++ + + + EE + F G + K
Sbjct: 242 PAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLK 301
Query: 298 LALADAVIEEIVPISQKIQ 316
+A+A + + +++
Sbjct: 302 IAVAKYLNMLLEDARKRLG 320
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4
PDB: 1h3e_A*
Length = 432
Score = 75.6 bits (185), Expect = 1e-14
Identities = 51/347 (14%), Positives = 107/347 (30%), Gaps = 36/347 (10%)
Query: 10 SGVQPTG-VLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNN-------------- 54
G PT LHLG+ + + +R+ + H + I D + +
Sbjct: 42 LGADPTRPDLHLGHAVVLR--KMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLE 99
Query: 55 IVQENLRYQSRLFVASFLAAGVDPSRNIIFKQSDV--GYHADLSWILSCVARMGWMNNMI 112
+EN + +P + S+ G L+ + + M
Sbjct: 100 ETRENAKTYVAQA---GKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 156
Query: 113 QFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFN-- 170
FK++ + SL +YP A D + RA G DQR +L + R + + +
Sbjct: 157 DFKKRYEAGIP--ISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQS 214
Query: 171 -----TEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSS 225
+ +K ++ G E + L + ++
Sbjct: 215 PQVCFLMPLLVGLDGREKMSKSLDNYIGLTEPPEAMFKKLMRVPDPLLPSYFRLLTDLEE 274
Query: 226 DFSRINLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKI-EEA 284
+ L P + + + T LP ++ A R + E
Sbjct: 275 EEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEE 334
Query: 285 LKQFGGKNFSQFKLALADAVIEEIVPISQKIQHLLKDKSYLDTILVE 331
+++ + K + + + E +P S+ L + + ++ +
Sbjct: 335 VRRAEARYDEVAKGGIPEEIPEVTIPASE----LKEGRIWVARLFTL 377
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 4e-07
Identities = 40/224 (17%), Positives = 73/224 (32%), Gaps = 67/224 (29%)
Query: 44 FIADLHAITNNIVQENLRYQSRL-FVASFL---AAGVDPSRNIIFKQSDVGYHAD-LSWI 98
F L T ++ + V FL ++ V+PS VG L+
Sbjct: 37 FNKILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPS--------KVGQFDQVLNLC 87
Query: 99 LSCVAR--MGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADIL--LYRATHVPVGED 154
L+ + N I + +T ++ +++ A +
Sbjct: 88 LTEFENCYLE--GNDIHALAAKLLQENDT--------TLVKTKELIKNYITARIMAKRPF 137
Query: 155 QRQH---L------EITRLIAQRF----NTE--FERKIKEVAQKYAQEEQYSKGFFPIIE 199
++ L +L+A F NT+ FE E+ Y + Y ++
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFE----ELRDLY---QTYH----VLVG 185
Query: 200 GLIDSSASRIRSL-RDASKKMSKSDSSD-FSR-INL---LDNPD 237
LI SA + L R D+ F++ +N+ L+NP
Sbjct: 186 DLIKFSAETLSELIRTT------LDAEKVFTQGLNILEWLENPS 223
Score = 44.5 bits (105), Expect = 3e-05
Identities = 33/224 (14%), Positives = 70/224 (31%), Gaps = 77/224 (34%)
Query: 159 LEITRLI-------AQRFNTEFERKIKEVAQKYAQ-EEQYSK--------GFFPII-EGL 201
LE L+ A + +F + + E + +A +E + G+ +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY--VSSLVE 73
Query: 202 IDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDI--IAKKIQKAKTDGDVLPSEVSG 259
+ L +F L+ DI +A AK + +
Sbjct: 74 PSKVGQFDQVLNLCLT--------EFEN-CYLEGNDIHALA-----AKLLQENDTTL--- 116
Query: 260 LENRLEAKNLIEIF-----ATMRQI-KIEE-ALKQ------------FGGK-N----FSQ 295
++ K LI+ + R K AL + FGG+ N F +
Sbjct: 117 ----VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
Query: 296 FKLALAD------AVIEEIV-PISQKIQHLLKDKSYLDTILVEG 332
L D ++ +++ ++ + L++ + + +G
Sbjct: 173 ----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Score = 34.5 bits (79), Expect = 0.038
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 49/196 (25%)
Query: 169 FNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDF- 227
F E ++I+E YS F E ++D + ++ ++ S S F
Sbjct: 1676 FGGEKGKRIRE---------NYSAMIF---ETIVDGKLKTEKIFKEINEH---STSYTFR 1720
Query: 228 SRINLLDNPDIIAKKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQ 287
S LL Q A T E + E+ L++K LI AT
Sbjct: 1721 SEKGLLSATQFT----QPALT-----LMEKAAFED-LKSKGLIPADAT------------ 1758
Query: 288 FGGKNFSQFK-LA-LADAV-IEEIVPI----SQKIQ-HLLKD---KSYLDTILVEGANRA 336
F G + ++ LA LAD + IE +V + +Q + +D +S I + A
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 337 RCRAQETMKYVNEIVG 352
+QE ++YV E VG
Sbjct: 1819 ASFSQEALQYVVERVG 1834
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.8 bits (71), Expect = 0.21
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 139 ADILLYRATHVPVG-----EDQRQHLE----ITRLIAQRFNTEFERKIKEVAQKYAQEEQ 189
AD R T P E+QR+ L+ ++++ Q + + ++ ++E Q+ Q EQ
Sbjct: 77 AD----RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR--QSEQ 130
Query: 190 YSK 192
K
Sbjct: 131 VEK 133
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 30.7 bits (69), Expect = 0.46
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237
+V + ++Y I E + + IRS DA ++K ++ +IN D
Sbjct: 334 DKVGEYLG--DKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMANPSLKINATDKEA 391
Query: 238 II 239
I+
Sbjct: 392 IV 393
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.2 bits (64), Expect = 1.5
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 12/36 (33%)
Query: 116 EKSKENKEETASLGLFMYPVLMAAD----ILLYRAT 147
EK K + ASL L+ AD L +AT
Sbjct: 18 EKQALKKLQ-ASLKLY-------ADDSAPALAIKAT 45
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 28.1 bits (62), Expect = 2.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 172 EFERKIKEVAQKYAQEEQ 189
E+++KIKE QKYA EE
Sbjct: 155 EYKQKIKEYIQKYATEEA 172
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
complex, nucleotide binding fold, structural genomics,
PSI; HET: TYD; 1.70A
{Methanothermobacterthermautotrophicus} SCOP: c.68.1.6
Length = 295
Score = 27.9 bits (62), Expect = 3.1
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 18/104 (17%)
Query: 101 CVARMGWMNNMIQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLE 160
V +I +EK K GL+ Y ++ P R LE
Sbjct: 147 GVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYD----NQVVEIARRIEP---SDRGELE 199
Query: 161 ITRLIAQRFNTEFERKIKEVAQKYAQEEQYSKGFFPIIEGLIDS 204
IT + + + + E +G + G D
Sbjct: 200 ITSVN-----------EEYLRMGKLRVELMGRGMAWLDTGTHDG 232
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 27.8 bits (61), Expect = 3.5
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 22 NYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENLRYQSRLF--VASFLAAGVDPS 79
+ + +R VI E M + ++H T + +L + + L
Sbjct: 84 DDIDTVREVI---ELAEQNKMVAVVEVHDATGRDSRSDLDRAVDYWIEMKDALI---GKE 137
Query: 80 RNIIF 84
+I
Sbjct: 138 DTVII 142
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 27.8 bits (61), Expect = 4.1
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 11 GVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHA 50
+ G ++ I E MY I D H
Sbjct: 76 YIGENGYATNPEVKDLVYEGI---ELAFEHDMYVIVDWHV 112
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* 1yla_A
2o25_A
Length = 253
Score = 27.3 bits (60), Expect = 4.9
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 172 EFERKIKEVAQKYA----QEEQYSKGFFPIIEGLIDSSASRI 209
F++ + A YA +Y+K + D +A +
Sbjct: 193 MFKQTARLWAHVYAGAPVSSPEYTKKIENLCAAGFDRNAVIV 234
>1a87_A Colicin N; bacteriocin, toxin, pore-forming activity; 3.10A
{Escherichia coli} SCOP: f.1.1.1
Length = 321
Score = 27.2 bits (60), Expect = 5.7
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237
++ + +Y + + + IRS +A ++K ++ ++N D
Sbjct: 142 DKLGEYLG--VKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNKVLANPKMKVNKSDKDA 199
Query: 238 IIA 240
I+
Sbjct: 200 IVN 202
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (59), Expect = 5.8
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 18/73 (24%)
Query: 1 MLSSDNLFVSGVQPTGVLHLG------NYLGMIR-NVIRRQETCN--------HLGMYFI 45
++S++N+ G++ GV N LG++ V+ E C + G+ F+
Sbjct: 678 LMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVV---ELCQKSPVMADLNGGLQFV 734
Query: 46 ADLHAITNNIVQE 58
+L T + +E
Sbjct: 735 PELKEFTAKLRKE 747
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative, ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 27.0 bits (59), Expect = 5.9
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 172 EFERKIKEVAQKYAQEEQ 189
F+ ++E +A ++
Sbjct: 142 GFDALLREHVSTHATPQK 159
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 27.3 bits (59), Expect = 5.9
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 7 LFVSGVQPTGVLHLGNYLGMIR-NVIRR 33
+ SG+ P+G +H+GN+ + ++
Sbjct: 23 VVESGITPSGYVHVGNFRELFTAYIVGH 50
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP:
f.1.1.1
Length = 204
Score = 27.1 bits (60), Expect = 6.6
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 178 KEVAQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPD 237
++ + ++Y I + + + IRS DA ++K ++ +IN D
Sbjct: 24 DKIGEHLG--DKYKAIAKDIADNIKNFQGKTIRSFDDAMASLNKITANPAMKINKADRDA 81
Query: 238 IIA 240
++
Sbjct: 82 LVN 84
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, structural genomics
consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium
falciparum 3D7}
Length = 152
Score = 26.6 bits (58), Expect = 8.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 172 EFERKIKEVAQKYAQEEQY 190
+E K+KE + YA ++ +
Sbjct: 133 IYEEKVKEYVKLYASKDLW 151
>3l9q_A DNA primase large subunit; POL alpha, DNA replication,
polymerase, iron-sulfur DNA-binding, DNA-directed RNA
polymerase, iron, iron-sulfur binding; HET: DNA; 1.70A
{Homo sapiens}
Length = 195
Score = 26.5 bits (58), Expect = 8.7
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 49 HAITNNIVQENLRYQSRLFVASFL-AAGVDPSRNIIF 84
+LR+ R+ FL G+ + + F
Sbjct: 21 QLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQF 57
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.134 0.375
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,909,375
Number of extensions: 134015
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 509
Number of HSP's successfully gapped: 56
Length of query: 355
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 262
Effective length of database: 3,438,538
Effective search space: 900896956
Effective search space used: 900896956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)