BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (355 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 355

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/355 (100%), Positives = 355/355 (100%)

Query: 1   MLSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENL 60
           MLSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENL
Sbjct: 1   MLSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENL 60

Query: 61  RYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE 120
           RYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE
Sbjct: 61  RYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE 120

Query: 121 NKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180
           NKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV
Sbjct: 121 NKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180

Query: 181 AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA 240
           AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA
Sbjct: 181 AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA 240

Query: 241 KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLAL 300
           KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLAL
Sbjct: 241 KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLAL 300

Query: 301 ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355
           ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH
Sbjct: 301 ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
           decarboxylase/phosphopantothenate synthase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 32.0 bits (71), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 195 FPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDII 239
            P+   ++ S+ S  R  + A  K+ + D  D  RI+L++NPDI+
Sbjct: 269 LPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGDTMRIDLMENPDIL 313


>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 273

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 260 LENRLEAKNLIEI--FATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQH 317
            EN LE   +  I  +  M   KI   ++      FS  K  +    +EEI  ISQ +  
Sbjct: 47  FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDL 106

Query: 318 LL 319
           +L
Sbjct: 107 IL 108


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 23.5 bits (49), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 203 DSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDII-------AKKIQKAKTDGD 251
           +S    I  LRD+ +  SK+ S D     ++DN + +       A+++QK + D D
Sbjct: 98  NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153


>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 817

 Score = 23.5 bits (49), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%)

Query: 112 IQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRF-- 169
           +++   S E+K      G+ ++ ++ A   +L+   ++  G        IT+ +A+ F  
Sbjct: 83  VKYAFVSAEDKNFYYHSGVDIFGIMRA---VLHNIRNISHGRRPEGASTITQQVAKNFLL 139

Query: 170 --NTEFERKIKEVAQKYAQEEQYSK 192
             N   +RKIKE+   +  E+ Y K
Sbjct: 140 TSNQTMDRKIKEILLSFRLEKAYDK 164


>gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 360

 Score = 23.5 bits (49), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 21/30 (70%)

Query: 128 LGLFMYPVLMAADILLYRATHVPVGEDQRQ 157
           LGLF+ PVLMA   ++++ + + + E++ +
Sbjct: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.134    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,732
Number of Sequences: 1233
Number of extensions: 8969
Number of successful extensions: 27
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 11
length of query: 355
length of database: 328,796
effective HSP length: 75
effective length of query: 280
effective length of database: 236,321
effective search space: 66169880
effective search space used: 66169880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)