BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (355 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780794|ref|YP_003065207.1| tryptophanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/355 (100%), Positives = 355/355 (100%) Query: 1 MLSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENL 60 MLSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENL Sbjct: 1 MLSSDNLFVSGVQPTGVLHLGNYLGMIRNVIRRQETCNHLGMYFIADLHAITNNIVQENL 60 Query: 61 RYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE 120 RYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE Sbjct: 61 RYQSRLFVASFLAAGVDPSRNIIFKQSDVGYHADLSWILSCVARMGWMNNMIQFKEKSKE 120 Query: 121 NKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180 NKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV Sbjct: 121 NKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRFNTEFERKIKEV 180 Query: 181 AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA 240 AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA Sbjct: 181 AQKYAQEEQYSKGFFPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDIIA 240 Query: 241 KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLAL 300 KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLAL Sbjct: 241 KKIQKAKTDGDVLPSEVSGLENRLEAKNLIEIFATMRQIKIEEALKQFGGKNFSQFKLAL 300 Query: 301 ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355 ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH Sbjct: 301 ADAVIEEIVPISQKIQHLLKDKSYLDTILVEGANRARCRAQETMKYVNEIVGLSH 355 >gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 405 Score = 32.0 bits (71), Expect = 0.018, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 26/45 (57%) Query: 195 FPIIEGLIDSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDII 239 P+ ++ S+ S R + A K+ + D D RI+L++NPDI+ Sbjct: 269 LPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGDTMRIDLMENPDIL 313 >gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 260 LENRLEAKNLIEI--FATMRQIKIEEALKQFGGKNFSQFKLALADAVIEEIVPISQKIQH 317 EN LE + I + M KI ++ FS K + +EEI ISQ + Sbjct: 47 FENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKREVISCPLEEIPSISQSVDL 106 Query: 318 LL 319 +L Sbjct: 107 IL 108 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%) Query: 203 DSSASRIRSLRDASKKMSKSDSSDFSRINLLDNPDII-------AKKIQKAKTDGD 251 +S I LRD+ + SK+ S D ++DN + + A+++QK + D D Sbjct: 98 NSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKIRADAD 153 >gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 817 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Query: 112 IQFKEKSKENKEETASLGLFMYPVLMAADILLYRATHVPVGEDQRQHLEITRLIAQRF-- 169 +++ S E+K G+ ++ ++ A +L+ ++ G IT+ +A+ F Sbjct: 83 VKYAFVSAEDKNFYYHSGVDIFGIMRA---VLHNIRNISHGRRPEGASTITQQVAKNFLL 139 Query: 170 --NTEFERKIKEVAQKYAQEEQYSK 192 N +RKIKE+ + E+ Y K Sbjct: 140 TSNQTMDRKIKEILLSFRLEKAYDK 164 >gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str. psy62] Length = 360 Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust. Identities = 10/30 (33%), Positives = 21/30 (70%) Query: 128 LGLFMYPVLMAADILLYRATHVPVGEDQRQ 157 LGLF+ PVLMA ++++ + + + E++ + Sbjct: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.134 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 218,732 Number of Sequences: 1233 Number of extensions: 8969 Number of successful extensions: 27 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 11 length of query: 355 length of database: 328,796 effective HSP length: 75 effective length of query: 280 effective length of database: 236,321 effective search space: 66169880 effective search space used: 66169880 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)