HHsearch alignment for GI: 254780795 and conserved domain: COG0478
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms].
Probab=98.53 E-value=1.7e-06 Score=61.65 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=81.5
Q ss_pred ECCCCCEEEEEEEEECCC-CEEEEEECC-------------------CCC-----HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 046681200179994399-589998216-------------------699-----8899999999999853267755510
Q gi|254780795|r 29 PIIHGVENSNFVIQTSKG-TFILTIYEK-------------------RMN-----EKDLPVFIELLHYISRNKLPCPIPI 83 (316)
Q Consensus 29 ~i~~G~~Ntny~v~t~~~-~yiLri~e~-------------------~~~-----~~~l~~~~~ll~~L~~~gipvP~pi 83 (316)
T Consensus 98 ~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~VP~P~ 177 (304)
T COG0478 98 KIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVPKPI 177 (304)
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 12567543179998899988899862057235654220065651356762224678989999999998403389899853
Q ss_pred CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 01026778752245155786478870768998999999998643675306875433231124564576675200155227
Q gi|254780795|r 84 PRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDL 163 (316)
Q Consensus 84 ~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 163 (316)
T Consensus 178 ~~----------nRHaVvMe~ieG~eL~~~r~----------------------~------~---------------en~ 204 (304)
T COG0478 178 AW----------NRHAVVMEYIEGVELYRLRL----------------------D------V---------------ENP 204 (304)
T ss_pred CC----------CCCEEEEEHCCCCEEECCCC----------------------C------C---------------CCH
T ss_conf 44----------45243020105614002667----------------------6------3---------------178
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC-CCEEEECCCCCCC
Q ss_conf 88999999988876521077744402234642256279-6048731621356
Q gi|254780795|r 164 KKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN-KIMGLIDFYFSCN 214 (316)
Q Consensus 164 ~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~-~i~giIDF~~~~~ 214 (316)
T Consensus 205 ~~il~~il~~~~~~~----~~GiVHGDlSefNIlV~~dg~~~-vIDwPQ~v~ 251 (304)
T COG0478 205 DEILDKILEEVRKAY----RRGIVHGDLSEFNILVTEDGDIV-VIDWPQAVP 251 (304)
T ss_pred HHHHHHHHHHHHHHH----HCCCCCCCCCHHEEEEECCCCEE-EEECCCCCC
T ss_conf 999999999999999----72911147735418981699889-986766645