HHsearch alignment for GI: 254780795 and conserved domain: COG3231
>COG3231 Aph Aminoglycoside phosphotransferase [Translation, ribosomal structure and biogenesis].
Probab=99.23 E-value=3.8e-10 Score=85.31 Aligned_cols=218 Identities=15% Similarity=0.101 Sum_probs=135.3
Q ss_pred EEEEEEECCCC-EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCC--
Q ss_conf 01799943995-899982166998899999999999853267755510010267787522451557864788707689--
Q gi|254780795|r 37 SNFVIQTSKGT-FILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHI-- 113 (316)
Q Consensus 37 tny~v~t~~~~-yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~-- 113 (316)
T Consensus 34 ~v~rl~a~~r~g~~~k~~-~~~~~a~L~~Ea~RlrWla~~~l~~P~V~~~~------~~~~~~wLl~salpG~~~s~~~~ 106 (266)
T COG3231 34 GVFRLFADSRPGLYLKIA-SSGPAAELEGEAARLRWLAGQGLGCPRVLGLE------DDADQAWLLMSALPGEDASHPRY 106 (266)
T ss_pred EEEEEECCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEC------CCCCHHHHHHHHCCCCCCCCHHH
T ss_conf 578975067871699972-37624445648999877511379997257631------57646577664058976436131
Q ss_pred --CH-HHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHH---CCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf --98-99999999864367530-6875433231124564576675-200---1552278899999998887652107774
Q gi|254780795|r 114 --SD-IHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFD---KVDEDLKKEIDHEFCFLKESWPKNLPTG 185 (316)
Q Consensus 114 --~~-~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~---~~~~~~~~~l~~~l~~~~~~~~~~Lp~g 185 (316)
T Consensus 107 ~~~p~r~v~~la~aLR~LH~l~~~aCPFd~rl~~rl~~a~~r~~a~~vdesdfd~e~qgr~~~El~d~L~~~rp~~edLV 186 (266)
T COG3231 107 ALDPKRAVPLLAEALRRLHELPVEACPFDRRLARRLAKARARVRAGLVDESDFDEERQGRTAEELFDELEARRPAVEDLV 186 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHCCCCHHHCE
T ss_conf 07999999999999999842982008951489999999999875157884442744328877999999985188412115
Q ss_pred EEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 44022346422562796048731621356800019899998643116888787889999988764188998999999999
Q gi|254780795|r 186 IIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISENELQSLPTL 265 (316)
Q Consensus 186 ~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~E~~~l~~l 265 (316)
T Consensus 187 v~HGDACLPN~i~d~~rf~GfIDlGrlGVaDRh~DLala~~s--~~~nl~-g~~~~~~fl~~Yg~--~~~d~~rl~~yr~ 261 (266)
T COG3231 187 VTHGDACLPNFILDGWRFSGFIDLGRLGVADRHQDLALATWS--LRFNLG-GDVWDDPFLDAYGR--GAIDPARLAYYRL 261 (266)
T ss_pred EECCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHH--HHHCCC-CCHHHHHHHHHHCC--CCCCHHHHHHHHH
T ss_conf 631764576567528715776651765514777868999999--875058-20666799997386--7898788999999
Q ss_pred H
Q ss_conf 9
Q gi|254780795|r 266 L 266 (316)
Q Consensus 266 l 266 (316)
T Consensus 262 l 262 (266)
T COG3231 262 L 262 (266)
T ss_pred H
T ss_conf 8