HHsearch alignment for GI: 254780795 and conserved domain: cd05033
>cd05033 PTKc_EphR Catalytic Domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=93.65 E-value=0.58 Score=25.86 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=67.9
Q ss_pred ECCCCCEEEEEEEEEC-CC----CEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 0466812001799943-99----58999821669988---9999999999985326775551001026778752245155
Q gi|254780795|r 29 PIIHGVENSNFVIQTS-KG----TFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN 100 (316)
Q Consensus 29 ~i~~G~~Ntny~v~t~-~~----~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~ 100 (316)
T Consensus 11 ~IG~G~fg~Vy~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-----pnIv~l~-g~--~~~~~~~~l 82 (266)
T cd05033 11 VIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDH-----PNIIRLE-GV--VTKSRPVMI 82 (266)
T ss_pred EEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCEEEEE-EE--EEECCEEEE
T ss_conf 993076839999999279965079999998865797899999999999984899-----7881199-99--968999999
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r 101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK 180 (316)
Q Consensus 101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 180 (316)
T Consensus 83 V~Ey~~~GsL~~-----------~---L~~~~~~l--------~---~~~~~---------~i~~~ia~gl~yLH~---- 124 (266)
T cd05033 83 ITEYMENGSLDK-----------F---LRENDGKF--------T---VGQLV---------GMLRGIASGMKYLSE---- 124 (266)
T ss_pred EEECCCCCCHHH-----------H---HHHCCCCC--------C---HHHHH---------HHHHHHHHHHHHHHH----
T ss_conf 998589996999-----------9---97278999--------9---99999---------999999999998855----
Q ss_pred CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 077744402234642256279604873162135
Q gi|254780795|r 181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 125 ---~~ivHrDlK~~NILl~~~~~~Kl~DFGls~ 154 (266)
T cd05033 125 ---MNYVHRDLAARNILVNSNLVCKVSDFGLSR 154 (266)
T ss_pred ---CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf ---888705567213778799988996567775