HHsearch alignment for GI: 254780795 and conserved domain: cd05044

>cd05044 PTKc_c-ros Catalytic Domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=95.61  E-value=0.19  Score=28.95  Aligned_cols=124  Identities=17%  Similarity=0.238  Sum_probs=59.6

Q ss_pred             CEEEEEECCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             589998216699889---99999999998532677555100102677875224515578647887076899899999999
Q gi|254780795|r   47 TFILTIYEKRMNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGS  123 (316)
Q Consensus        47 ~yiLri~e~~~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~  123 (316)
T Consensus        28 ~VAvK~l~~~~~~~~~~~~~~E~~il~~l~H-----pnIv~~~-g--~~~~~~~~~lvmE~~~~GsL~~-----------   88 (270)
T cd05044          28 RVAVKTLRKGATDQEKKEFLKEAHLMSNFNH-----PNILKLL-G--VCLLNEPQYLILELMEGGDLLS-----------   88 (270)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEE-E--EEEECCEEEEEEECCCCCCHHH-----------
T ss_conf             9999998866897999999999999985899-----8988198-9--9998998899998468986999-----------


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC--
Q ss_conf             864367530687543323112456457667520015522788999999988876521077744402234642256279--
Q gi|254780795|r  124 MLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNN--  201 (316)
Q Consensus       124 ~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~--  201 (316)
T Consensus        89 ---~l~~~-~~~~~~-~~~l---~~~~~~---------~i~~~ia~gl~yLH~-------~~ivHrDlKp~NILl~~~~~  144 (270)
T cd05044          89 ---YLRGA-RVTRFG-PPLL---TLSELL---------DICLDVAKGCVYLER-------MHFIHRDLAARNCLVSEKTY  144 (270)
T ss_pred             ---HHHHC-CCCCCC-CCCC---CHHHHH---------HHHHHHHHHHHHHHH-------CCCCCCCCCCCEEEECCCCC
T ss_conf             ---98631-335577-7667---999999---------999999999999997-------89516777744179735777


Q ss_pred             ----CCEEEECCCCCC
Q ss_conf             ----604873162135
Q gi|254780795|r  202 ----KIMGLIDFYFSC  213 (316)
Q Consensus       202 ----~i~giIDF~~~~  213 (316)
T Consensus       145 ~~~~~~vKl~DFGla~  160 (270)
T cd05044         145 SDADRVVKIGDFGLAR  160 (270)
T ss_pred             CCCCCCEEEEECCCCC
T ss_conf             7777727981447733