HHsearch alignment for GI: 254780795 and conserved domain: cd05050
>cd05050 PTKc_Musk Catalytic Domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=96.64 E-value=0.021 Score=35.21 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=73.3
Q ss_pred CEEEEEECCCCCEEEEEEEEE------CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 605310046681200179994------3995-8999821669988---99999999999853267755510010267787
Q gi|254780795|r 23 QLNSVQPIIHGVENSNFVIQT------SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYG 92 (316)
Q Consensus 23 ~~~~~~~i~~G~~Ntny~v~t------~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~ 92 (316)
T Consensus 6 ~~~~~~~iG~G~fG~Vy~a~~~g~~~~~~~~~vAvK~l~~~~~~~~~~~f~~E~~il~~l~H-----pNIV~~~-g--~~ 77 (288)
T cd05050 6 NIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDH-----PNIVKLL-G--VC 77 (288)
T ss_pred HEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCC-----CCCCCEE-E--EE
T ss_conf 90980398228781899999758645885759999998856797899999999999985799-----9883376-7--99
Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 52245155786478870768998999999998643675306875433231124564576675200155227889999999
Q gi|254780795|r 93 FLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFC 172 (316)
Q Consensus 93 ~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 172 (316)
T Consensus 78 ~~~~~~~lv~Ey~~~g~L~~~----l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~-----l~i~~~ia~gl~ 144 (288)
T cd05050 78 AVGKPMCLLFEYMAYGDLNEF----LRH--RSPRAQCSLSHSTSSARKCGLNPLPLS--CTEQ-----LCIAKQVAAGMA 144 (288)
T ss_pred EECCEEEEEEEECCCCCHHHH----HHH--CCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHH-----HHHHHHHHHHHH
T ss_conf 669976999991689909999----985--285421000112210001457778889--9999-----999999999999
Q ss_pred HHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 88876521077744402234642256279604873162135
Q gi|254780795|r 173 FLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 173 ~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 145 yLH~-------~~ivHrDlKp~NiLl~~~~~~Kl~DFGls~ 178 (288)
T cd05050 145 YLSE-------RKFVHRDLATRNCLVGENMVVKIADFGLSR 178 (288)
T ss_pred HHHH-------CCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf 9863-------990526766066898799988860052540