HHsearch alignment for GI: 254780795 and conserved domain: cd05052

>cd05052 PTKc_Abl Catalytic Domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=97.45  E-value=0.0042  Score=39.72  Aligned_cols=139  Identities=17%  Similarity=0.153  Sum_probs=75.7

Q ss_pred             EEECCCCCEEEEEEEEECC-C-CEEEEEECC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf             1004668120017999439-9-589998216-699889999999999985326775551001026778752245155786
Q gi|254780795|r   27 VQPIIHGVENSNFVIQTSK-G-TFILTIYEK-RMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFS  103 (316)
Q Consensus        27 ~~~i~~G~~Ntny~v~t~~-~-~yiLri~e~-~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~  103 (316)
T Consensus        11 ~~~iG~G~fG~Vyk~~~~~~~~~VAvK~~~~~~~~~~~~~~Ei~il~~l~H-----pnIv~~~-g--~~~~~~~~~iv~E   82 (263)
T cd05052          11 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH-----PNLVQLL-G--VCTREPPFYIITE   82 (263)
T ss_pred             EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCCCCEE-E--EEEECCEEEEEEE
T ss_conf             459840788299999988999499999988875619999999999985799-----9998588-9--9946998999998


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             47887076899899999999864367530687543323112456457667520015522788999999988876521077
Q gi|254780795|r  104 FIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLP  183 (316)
Q Consensus       104 ~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp  183 (316)
T Consensus        83 y~~~G~L~-----------~---~l~~~~~~-------~--~-~~~~~---------~~ia~qia~gl~yLH~-------  122 (263)
T cd05052          83 FMTYGNLL-----------D---YLRECNRQ-------E--V-NAVVL---------LYMATQISSAMEYLEK-------  122 (263)
T ss_pred             CCCCCCHH-----------H---HHHHCCCC-------C--C-CHHHH---------HHHHHHHHHHHHHHHH-------
T ss_conf             27999089-----------9---99756988-------8--9-99999---------9999999999999965-------


Q ss_pred             CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             744402234642256279604873162135
Q gi|254780795|r  184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       123 ~~iiHrDLK~~NiLl~~~~~vKl~DFGls~  152 (263)
T cd05052         123 KNFIHRDLAARNCLVGENHLVKVADFGLSR  152 (263)
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf             895357566020567799949998667655