HHsearch alignment for GI: 254780795 and conserved domain: cd05055
>cd05055 PTKc_PDGFR Catalytic Domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=96.24 E-value=0.064 Score=32.04 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=70.4
Q ss_pred EECCCCCEEEEEEEEEC----C---CCEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 00466812001799943----9---958999821669988---9999999999985326775551001026778752245
Q gi|254780795|r 28 QPIIHGVENSNFVIQTS----K---GTFILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKK 97 (316)
Q Consensus 28 ~~i~~G~~Ntny~v~t~----~---~~yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k 97 (316)
T Consensus 41 ~~lG~G~fG~Vy~a~~~g~~~~~~~~~VAvK~l~~~~~~~~~~~f~~Ei~il~~L~~H----pNIV~l~-g--~~~~~~~ 113 (302)
T cd05055 41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNH----ENIVNLL-G--ACTIGGP 113 (302)
T ss_pred CEECCCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC----CCEEEEE-E--EEEECCE
T ss_conf 4981177719999899078887832799999957879979999999999999746799----9980899-9--9998999
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 15578647887076899899999999864367530687543323112456457667520015522788999999988876
Q gi|254780795|r 98 PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKES 177 (316)
Q Consensus 98 ~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 177 (316)
T Consensus 114 ~~iV~Ey~~~GsL~~--------------~L~~~~-------~~~l~---~~~~~---------~i~~qia~gl~yLH~- 159 (302)
T cd05055 114 ILVITEYCCYGDLLN--------------FLRRKR-------ESFLT---LEDLL---------SFSYQVAKGMAFLAS- 159 (302)
T ss_pred EEEEEECCCCCCHHH--------------HHHHCC-------CCCCC---HHHHH---------HHHHHHHHHHHHHHH-
T ss_conf 999998689996899--------------997578-------88899---99999---------999999999999976-
Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 521077744402234642256279604873162135
Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 160 ------~~iiHRDLK~~NILl~~~~~~Ki~DFGla~ 189 (302)
T cd05055 160 ------KNCIHRDLAARNVLLTHGKIVKICDFGLAR 189 (302)
T ss_pred ------CCCCCCCCCCCCEEECCCCCEEEEECCCCE
T ss_conf ------894777465022336689957860257621