HHsearch alignment for GI: 254780795 and conserved domain: cd05057
>cd05057 PTKc_EGFR_like Catalytic Domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=96.66 E-value=0.058 Score=32.32 Aligned_cols=139 Identities=15% Similarity=0.196 Sum_probs=70.7
Q ss_pred EEEEECCCCCEEEEEEEE-ECCC-----CEEEEEECCCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 531004668120017999-4399-----58999821669988999---99999999853267755510010267787522
Q gi|254780795|r 25 NSVQPIIHGVENSNFVIQ-TSKG-----TFILTIYEKRMNEKDLP---VFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316)
Q Consensus 25 ~~~~~i~~G~~Ntny~v~-t~~~-----~yiLri~e~~~~~~~l~---~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316)
T Consensus 10 e~~~~lG~G~fG~Vyk~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-----~HpnIv~l~-g~~---~~ 80 (279)
T cd05057 10 EKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREATSPKANKEILDEAYVMASV-----DHPHVVRLL-GIC---LT 80 (279)
T ss_pred EEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCCCEEEEC-EEE---EC
T ss_conf 882697318881999899927998600799999988767878999999999999847-----999886001-289---54
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316)
Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316)
T Consensus 81 ~~~~lV~e~~~~GsL~--------------~~l~~~~~~l--------~~---~~~~---------~~~~qia~gl~yLH 126 (279)
T cd05057 81 SQVQLITQLMPLGCLL--------------DYVRNHKDNI--------GS---QYLL---------NWCVQIAKGMSYLE 126 (279)
T ss_pred CCEEEEEEECCCCCHH--------------HHHHHCCCCC--------CH---HHHH---------HHHHHHHHHHHHHH
T ss_conf 9769999957999589--------------9997347899--------99---9999---------99999999999997
Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 76521077744402234642256279604873162135
Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 127 ~-------~~iiHRDlK~~NILl~~~~~~ki~DFGls~ 157 (279)
T cd05057 127 E-------RRLVHRDLAARNVLVKTPNHVKITDFGLAK 157 (279)
T ss_pred H-------CCCCCCCCCHHHEEECCCCCEEEECCCCCE
T ss_conf 6-------896346576310336899928996066433