HHsearch alignment for GI: 254780795 and conserved domain: cd05079

>cd05079 PTKc_Jak1_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=95.97  E-value=0.14  Score=29.90  Aligned_cols=142  Identities=18%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             EEEEEECCCCCEEEEEEEEE-----CCCC-EEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf             05310046681200179994-----3995-8999821669988---9999999999985326775551001026778752
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQT-----SKGT-FILTIYEKRMNEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFL   94 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~t-----~~~~-yiLri~e~~~~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~   94 (316)
T Consensus         6 ~k~~~~iG~G~fG~V~~~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~Hp-----NIv~~~-g~-~~~~   78 (284)
T cd05079           6 LKRIRDLGEGHFGKVELCRYDPEGDNTGELVAVKSLKPENGGEHIADLKKEIEILRNLYHE-----NIVKYK-GI-CTEE   78 (284)
T ss_pred             CEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC-----CCCEEE-EE-EECC
T ss_conf             8644596137083999858864427779399999984212867899999999999867998-----884086-57-8337


Q ss_pred             CCC-CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             245-1557864788707689989999999986436753068754332311245645766752001552278899999998
Q gi|254780795|r   95 CKK-PANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCF  173 (316)
Q Consensus        95 ~~k-~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  173 (316)
T Consensus        79 ~~~~~~lVmEy~~~GsL~~-----------~l---~~~~--------~~l~~~~---~~---------~~~~qia~gl~y  124 (284)
T cd05079          79 GGNGIKLIMEFLPSGSLKE-----------YL---PRNK--------NKINLKQ---LL---------KYAVQICKGMDY  124 (284)
T ss_pred             CCCEEEEEEEECCCCCHHH-----------HH---HHCC--------CCCCHHH---HH---------HHHHHHHHHHHH
T ss_conf             9977999999389994899-----------98---6346--------8999999---99---------999999999998


Q ss_pred             HHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             8876521077744402234642256279604873162135
Q gi|254780795|r  174 LKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       174 ~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       125 LH-------~~~ivHrDlK~~NiLl~~~~~~Kl~DFGla~  157 (284)
T cd05079         125 LG-------SRQYVHRDLAARNVLVENERMVKIGDFGLTK  157 (284)
T ss_pred             HH-------HCCEECCCCCCCEEEECCCCCEEEEECCCCE
T ss_conf             70-------3983647776223898799978997366654