HHsearch alignment for GI: 254780795 and conserved domain: cd05081

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=96.79  E-value=0.046  Score=32.95  Aligned_cols=144  Identities=16%  Similarity=0.193  Sum_probs=73.8

Q ss_pred             EEEEEECCCCCEEEEEEEE-----ECCCCE-EEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf             0531004668120017999-----439958-9998216699--8899999999999853267755510010267787522
Q gi|254780795|r   24 LNSVQPIIHGVENSNFVIQ-----TSKGTF-ILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC   95 (316)
Q Consensus        24 ~~~~~~i~~G~~Ntny~v~-----t~~~~y-iLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~   95 (316)
T Consensus         6 ~~~~~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~~~~~~~~~~Ei~il~~l~Hp-----NIv~~~-g~~~~~~~   79 (284)
T cd05081           6 LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHD-----NIVKYK-GVCYSAGR   79 (284)
T ss_pred             CEEEEEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----CEEEEE-EEEECCCC
T ss_conf             299999714738599987982505788819999998877868899999999999976899-----882588-89972899


Q ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r   96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK  175 (316)
Q Consensus        96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  175 (316)
T Consensus        80 ~~~~lV~Ey~~~GsL~~--------------~L~~~~--------~~~~~~~~~------------~~~~~ia~gl~yLH  125 (284)
T cd05081          80 RNLRLVMEYLPYGSLRD--------------YLQKHR--------ERLDHRKLL------------LYASQICKGMEYLG  125 (284)
T ss_pred             CEEEEEEECCCCCCHHH--------------HHHHCC--------CCCCHHHHH------------HHHHHHHHHHHHHH
T ss_conf             67999996489899899--------------997478--------889999999------------99999999999883


Q ss_pred             HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             765210777444022346422562796048731621356
Q gi|254780795|r  176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
T Consensus       126 ~-------~~iiHrDlK~~NILld~~~~~Kl~DFGla~~  157 (284)
T cd05081         126 S-------KRYVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             H-------CCCCCCCCCHHEEEECCCCCEEEECCCCCEE
T ss_conf             3-------8914166764207988999589903675226