HHsearch alignment for GI: 254780795 and conserved domain: cd05081
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (Repeat 2) Domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=96.79 E-value=0.046 Score=32.95 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred EEEEEECCCCCEEEEEEEE-----ECCCCE-EEEEECCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 0531004668120017999-----439958-9998216699--8899999999999853267755510010267787522
Q gi|254780795|r 24 LNSVQPIIHGVENSNFVIQ-----TSKGTF-ILTIYEKRMN--EKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLC 95 (316)
Q Consensus 24 ~~~~~~i~~G~~Ntny~v~-----t~~~~y-iLri~e~~~~--~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~ 95 (316)
T Consensus 6 ~~~~~~iG~G~fG~V~~~~~~~~~~~~g~~vAiK~~~~~~~~~~~~~~~Ei~il~~l~Hp-----NIv~~~-g~~~~~~~ 79 (284)
T cd05081 6 LKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHD-----NIVKYK-GVCYSAGR 79 (284)
T ss_pred CEEEEEECCCCCEEEEEEEECCEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC-----CEEEEE-EEEECCCC
T ss_conf 299999714738599987982505788819999998877868899999999999976899-----882588-89972899
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 45155786478870768998999999998643675306875433231124564576675200155227889999999888
Q gi|254780795|r 96 KKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLK 175 (316)
Q Consensus 96 ~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 175 (316)
T Consensus 80 ~~~~lV~Ey~~~GsL~~--------------~L~~~~--------~~~~~~~~~------------~~~~~ia~gl~yLH 125 (284)
T cd05081 80 RNLRLVMEYLPYGSLRD--------------YLQKHR--------ERLDHRKLL------------LYASQICKGMEYLG 125 (284)
T ss_pred CEEEEEEECCCCCCHHH--------------HHHHCC--------CCCCHHHHH------------HHHHHHHHHHHHHH
T ss_conf 67999996489899899--------------997478--------889999999------------99999999999883
Q ss_pred HHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 765210777444022346422562796048731621356
Q gi|254780795|r 176 ESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 176 ~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 126 ~-------~~iiHrDlK~~NILld~~~~~Kl~DFGla~~ 157 (284)
T cd05081 126 S-------KRYVHRDLATRNILVESENRVKIGDFGLTKV 157 (284)
T ss_pred H-------CCCCCCCCCHHEEEECCCCCEEEECCCCCEE
T ss_conf 3-------8914166764207988999589903675226