HHsearch alignment for GI: 254780795 and conserved domain: cd05102
>cd05102 PTKc_VEGFR3 Catalytic Domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=92.45 E-value=0.096 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=25.7
Q ss_pred CCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 744402234642256279604873162135
Q gi|254780795|r 184 TGIIHADLFPDNVLFYNNKIMGLIDFYFSC 213 (316)
Q Consensus 184 ~g~IHgDl~~~NiL~~~~~i~giIDF~~~~ 213 (316)
T Consensus 193 ~~iiHRDLK~~NiLl~~~~~vKi~DFGlsr 222 (338)
T cd05102 193 RKCIHRDLAARNILLSENNVVKICDFGLAR 222 (338)
T ss_pred CCCCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf 892346688686998899988983354651