HHsearch alignment for GI: 254780795 and conserved domain: cd05144

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=98.89  E-value=6.7e-08  Score=70.74  Aligned_cols=134  Identities=23%  Similarity=0.306  Sum_probs=83.5

Q ss_pred             CCEEEEE-ECCCCCEEEEEEEEECCCC-EEEEEECCC-------------------CCHH-----HHHHHHHHHHHHHHC
Q ss_conf             8605310-0466812001799943995-899982166-------------------9988-----999999999998532
Q gi|254780795|r   22 GQLNSVQ-PIIHGVENSNFVIQTSKGT-FILTIYEKR-------------------MNEK-----DLPVFIELLHYISRN   75 (316)
Q Consensus        22 g~~~~~~-~i~~G~~Ntny~v~t~~~~-yiLri~e~~-------------------~~~~-----~l~~~~~ll~~L~~~   75 (316)
T Consensus        14 g~i~~v~~~I~tGKEa~Vy~a~~~~g~~~avKi~r~~~~sFk~~k~~r~y~~~~~~~~~~~~~r~~A~kE~~nL~rl~~~   93 (198)
T cd05144          14 GVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEE   93 (198)
T ss_pred             CCCHHHCCEEECCCCCEEEEEECCCCCEEEEEEEECCCCCEEECCCEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             87754097562262612899998999899999999585304131210022125553128999999999999999999984


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             67755510010267787522451557864788707689989999999986436753068754332311245645766752
Q gi|254780795|r   76 KLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKC  155 (316)
Q Consensus        76 gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~  155 (316)
T Consensus        94 Gv~VP~Pi~~~~----------~vlvMefI~g~~l~~~~~-----------------------------~~~--------  126 (198)
T cd05144          94 GFPVPKPIDWNR----------HAVVMEYIDGVELYRVRV-----------------------------LED--------  126 (198)
T ss_pred             CCCCCCEEEECC----------CEEEEEECCCCCCCCCCC-----------------------------CHH--------
T ss_conf             999998588518----------989997337811311544-----------------------------151--------


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEC-CCCCEEEECCCCCCC
Q ss_conf             00155227889999999888765210777444022346422562-796048731621356
Q gi|254780795|r  156 FDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFY-NNKIMGLIDFYFSCN  214 (316)
Q Consensus       156 ~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~-~~~i~giIDF~~~~~  214 (316)
T Consensus       127 -------~~~~y~~ii~~~~~l~-~---~glVHgDLSEyNIL~~~~~~~~-iID~~QaV~  174 (198)
T cd05144         127 -------PEEVLDEILEEIVKAY-K---HGIIHGDLSEFNILVDDDEKIY-IIDWPQMVS  174 (198)
T ss_pred             -------HHHHHHHHHHHHHHHH-H---CCCCCCCCCHHHEEECCCCCEE-EEECCCCCC
T ss_conf             -------9999999999999998-6---6943257436652554799899-996665015