HHsearch alignment for GI: 254780795 and conserved domain: cd05146
>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=98.73 E-value=4.2e-07 Score=65.57 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999985326775551001026778752245155786478870768998999999998643675306875433231
Q gi|254780795|r 63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNT 142 (316)
Q Consensus 63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~ 142 (316)
T Consensus 74 ~kEf~nL~rl~~~Gv~vP~Pi~~~----------~~vlvMe~ig~~g~pap~L----------~-------d~~~----- 121 (197)
T cd05146 74 EKEMHNLKRMQKAGIPCPEVVVLK----------KHVLVMSFIGDDQVPAPKL----------K-------DAKL----- 121 (197)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEC----------CCEEEEEEECCCCCCCCCH----------H-------CCCC-----
T ss_conf 999999999998599999846752----------9889999836999707431----------0-------1678-----
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 124564576675200155227889999999888765210777444022346422562796048731621356
Q gi|254780795|r 143 LSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316)
T Consensus 122 -~~~---------------~~~~~~~~~i~~i~~l~-~--~~gLVHgDlSEyNil~~~~~~~-iID~~QaV~ 173 (197)
T cd05146 122 -NDE---------------EMKNAYYQVLSMMKQLY-K--ECNLVHADLSEYNMLWHDGKVW-FIDVSQSVE 173 (197)
T ss_pred -CHH---------------HHHHHHHHHHHHHHHHH-H--HCCCEECCCCHHHEEECCCCEE-EEECCCCCC
T ss_conf -848---------------89999999999999999-9--8395012410330164279879-996774015