HHsearch alignment for GI: 254780795 and conserved domain: cd05146

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.
Probab=98.73  E-value=4.2e-07  Score=65.57  Aligned_cols=100  Identities=22%  Similarity=0.346  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99999999985326775551001026778752245155786478870768998999999998643675306875433231
Q gi|254780795|r   63 PVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNT  142 (316)
Q Consensus        63 ~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~  142 (316)
T Consensus        74 ~kEf~nL~rl~~~Gv~vP~Pi~~~----------~~vlvMe~ig~~g~pap~L----------~-------d~~~-----  121 (197)
T cd05146          74 EKEMHNLKRMQKAGIPCPEVVVLK----------KHVLVMSFIGDDQVPAPKL----------K-------DAKL-----  121 (197)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEC----------CCEEEEEEECCCCCCCCCH----------H-------CCCC-----
T ss_conf             999999999998599999846752----------9889999836999707431----------0-------1678-----


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf             124564576675200155227889999999888765210777444022346422562796048731621356
Q gi|254780795|r  143 LSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN  214 (316)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~  214 (316)
T Consensus       122 -~~~---------------~~~~~~~~~i~~i~~l~-~--~~gLVHgDlSEyNil~~~~~~~-iID~~QaV~  173 (197)
T cd05146         122 -NDE---------------EMKNAYYQVLSMMKQLY-K--ECNLVHADLSEYNMLWHDGKVW-FIDVSQSVE  173 (197)
T ss_pred             -CHH---------------HHHHHHHHHHHHHHHHH-H--HCCCEECCCCHHHEEECCCCEE-EEECCCCCC
T ss_conf             -848---------------89999999999999999-9--8395012410330164279879-996774015