>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

Probab=98.81 E-value=8e-08 Score=70.25 Aligned_cols=133 Identities=21% Similarity=0.312 Sum_probs=77.7 Q ss_pred CCCCCEEEEEEEEECCCC-EEEEEECCCC---------------------C--H-----HHHHHHHHHHHHHHHCCCCCC Q ss_conf 466812001799943995-8999821669---------------------9--8-----899999999999853267755 Q gi|254780795|r 30 IIHGVENSNFVIQTSKGT-FILTIYEKRM---------------------N--E-----KDLPVFIELLHYISRNKLPCP 80 (316) Q Consensus 30 i~~G~~Ntny~v~t~~~~-yiLri~e~~~---------------------~--~-----~~l~~~~~ll~~L~~~gipvP 80 (316) T Consensus 5 Ig~GKEa~Vy~a~~~~g~~~alKi~r~~~~sFk~~~~Y~~gd~r~~~~~~~~~~r~~~~~wA~kEf~~L~rl~~~Gv~VP 84 (190) T cd05147 5 ISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIPCP 84 (190) T ss_pred CCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 30462604899998999899999957670110466776437665642555669889999999999999999998599999 Q ss_pred CCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 51001026778752245155786478870768998999999998643675306875433231124564576675200155 Q gi|254780795|r 81 IPIPRNDGKLYGFLCKKPANIFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVD 160 (316) Q Consensus 81 ~pi~~~~G~~~~~~~~k~~~L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~ 160 (316) T Consensus 85 ~Pi~~----------~rhvlvMe~Ig~~g~pap~-------------L~----d~~~------~~--------------- 116 (190) T cd05147 85 EPILL----------KSHVLVMEFIGDDGWAAPR-------------LK----DAPL------SE--------------- 116 (190) T ss_pred CEEEE----------CCCEEEEEEECCCCCCCCC-------------CC----CCCC------CH--------------- T ss_conf 84685----------2989999985589951320-------------14----5889------87--------------- Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC Q ss_conf 227889999999888765210777444022346422562796048731621356 Q gi|254780795|r 161 EDLKKEIDHEFCFLKESWPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCN 214 (316) Q Consensus 161 ~~~~~~l~~~l~~~~~~~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~ 214 (316) T Consensus 117 ~~~~~~~~~il~~~~~ly~~---~~lVHGDLSEyNIl~~~~~~~-iID~pQaV~ 166 (190) T cd05147 117 SKARELYLQVIQIMRILYQD---CRLVHADLSEYNLLYHDGKLY-IIDVSQSVE 166 (190) T ss_pred HHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEECCCCEE-EEECCCCCC T ss_conf 99999999999999999997---493224531542052489989-996664114

HHsearch alignment for GI: 254780795 and conserved domain: cd05147