HHsearch alignment for GI: 254780795 and conserved domain: cd05150

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=99.71  E-value=1.6e-15  Score=120.06  Aligned_cols=224  Identities=16%  Similarity=0.170  Sum_probs=139.2

Q ss_pred             ECCCCCE-EEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf             0466812-001799943995899982166998899999999999853267755510010267787522451557864788
Q gi|254780795|r   29 PIIHGVE-NSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG  107 (316)
Q Consensus        29 ~i~~G~~-Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G  107 (316)
T Consensus         5 ~~~~G~SgA~V~r~~~~~~~~ylK~~~-~~~~~~l~~Ea~rl~WL~~~-~pvP~Vl~~------~~~~~~~~Llt~av~G   76 (244)
T cd05150           5 RVTEGQSGATVYRLDGKNPGLYLKIAP-SGPTYELEREAERLRWLAGK-LPVPEVIDY------GSDDGRAWLLTSAVPG   76 (244)
T ss_pred             CCCCCCCCCEEEEECCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCC-CCCCEEEEE------ECCCCCCEEEEECCCC
T ss_conf             167887778799970799857999665-88733369999999998505-999759996------0258874688943389


Q ss_pred             CCCCCC----C-HHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHHC--CCHHH-HHHHHHHHHHHHHH
Q ss_conf             707689----9-899999999864367530-6875433231124564576675-2001--55227-88999999988876
Q gi|254780795|r  108 SPLNHI----S-DIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFDK--VDEDL-KKEIDHEFCFLKES  177 (316)
Q Consensus       108 ~~~~~~----~-~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~l~~~l~~~~~~  177 (316)
T Consensus        77 ~~a~~~~~~~~~~~~~~~lA~~Lr~LH~lp~~~CPf~~~l~~~l~~A~~~~~~g~vd~~d~~~~~~g~~~~el~~~l~~~  156 (244)
T cd05150          77 VPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEAT  156 (244)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHC
T ss_conf             75444455439999999999999985389921189866289999999999970688945676100499999999999843


Q ss_pred             HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             52107774440223464225627960487316213568000198999986431168887878899999887641889989
Q gi|254780795|r  178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISEN  257 (316)
Q Consensus       178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~  257 (316)
T Consensus       157 ~p~~~~~v~~HGD~~~~N~l~~~~~~~g~iD~~~~g~aDr~~DLa~~~~--sl~~n~-~~~~~~~~Fl~~YG~~--~~D~  231 (244)
T cd05150         157 RPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVADRYQDLALAVR--SLRENL-GGEEYAARFLDRYGID--APDP  231 (244)
T ss_pred             CCCCCCCEEECCCCCCCCEEEECCEEEEEEECCCCCCCCHHHHHHHHHH--HHHHCC-CCHHHHHHHHHHCCCC--CCCH
T ss_conf             9975684787788888888985891899997666677777999999996--775306-9838999999980999--8998


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780795|r  258 ELQSLPTL  265 (316)
Q Consensus       258 E~~~l~~l  265 (316)
T Consensus       232 ~rl~~y~l  239 (244)
T cd05150         232 EKLAYYRL  239 (244)
T ss_pred             HHHHHHHH
T ss_conf             99999998