HHsearch alignment for GI: 254780795 and conserved domain: cd05150
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=99.71 E-value=1.6e-15 Score=120.06 Aligned_cols=224 Identities=16% Similarity=0.170 Sum_probs=139.2
Q ss_pred ECCCCCE-EEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
Q ss_conf 0466812-001799943995899982166998899999999999853267755510010267787522451557864788
Q gi|254780795|r 29 PIIHGVE-NSNFVIQTSKGTFILTIYEKRMNEKDLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIFSFIKG 107 (316)
Q Consensus 29 ~i~~G~~-Ntny~v~t~~~~yiLri~e~~~~~~~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~~~i~G 107 (316)
T Consensus 5 ~~~~G~SgA~V~r~~~~~~~~ylK~~~-~~~~~~l~~Ea~rl~WL~~~-~pvP~Vl~~------~~~~~~~~Llt~av~G 76 (244)
T cd05150 5 RVTEGQSGATVYRLDGKNPGLYLKIAP-SGPTYELEREAERLRWLAGK-LPVPEVIDY------GSDDGRAWLLTSAVPG 76 (244)
T ss_pred CCCCCCCCCEEEEECCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCC-CCCCEEEEE------ECCCCCCEEEEECCCC
T ss_conf 167887778799970799857999665-88733369999999998505-999759996------0258874688943389
Q ss_pred CCCCCC----C-HHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH-HHHC--CCHHH-HHHHHHHHHHHHHH
Q ss_conf 707689----9-899999999864367530-6875433231124564576675-2001--55227-88999999988876
Q gi|254780795|r 108 SPLNHI----S-DIHCEEIGSMLASMHQKT-KNFHLYRKNTLSPLNLKFLWAK-CFDK--VDEDL-KKEIDHEFCFLKES 177 (316)
Q Consensus 108 ~~~~~~----~-~~~~~~lG~~La~lH~~~-~~f~~~r~~~~~~~~~~~~~~~-~~~~--~~~~~-~~~l~~~l~~~~~~ 177 (316)
T Consensus 77 ~~a~~~~~~~~~~~~~~~lA~~Lr~LH~lp~~~CPf~~~l~~~l~~A~~~~~~g~vd~~d~~~~~~g~~~~el~~~l~~~ 156 (244)
T cd05150 77 VPAAALWEELEPERLVDALAEALRRLHALPVADCPFDRRLDRRLAEARARVENGLVDEDDFDDERRGWSAEELYAELEAT 156 (244)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHCCCCHHHHHHHHHHC
T ss_conf 75444455439999999999999985389921189866289999999999970688945676100499999999999843
Q ss_pred HHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 52107774440223464225627960487316213568000198999986431168887878899999887641889989
Q gi|254780795|r 178 WPKNLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSCNDFLMYDLSICINAWCFDENNTYNPSRGFSILNGYNKVRKISEN 257 (316)
Q Consensus 178 ~~~~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~~~~~i~DLAi~i~~~c~~~~~~~d~~~~~~~l~gY~~vrpLs~~ 257 (316)
T Consensus 157 ~p~~~~~v~~HGD~~~~N~l~~~~~~~g~iD~~~~g~aDr~~DLa~~~~--sl~~n~-~~~~~~~~Fl~~YG~~--~~D~ 231 (244)
T cd05150 157 RPAEEDLVVTHGDACLPNIIVDPGKFSGFIDLGRLGVADRYQDLALAVR--SLRENL-GGEEYAARFLDRYGID--APDP 231 (244)
T ss_pred CCCCCCCEEECCCCCCCCEEEECCEEEEEEECCCCCCCCHHHHHHHHHH--HHHHCC-CCHHHHHHHHHHCCCC--CCCH
T ss_conf 9975684787788888888985891899997666677777999999996--775306-9838999999980999--8998
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780795|r 258 ELQSLPTL 265 (316)
Q Consensus 258 E~~~l~~l 265 (316)
T Consensus 232 ~rl~~y~l 239 (244)
T cd05150 232 EKLAYYRL 239 (244)
T ss_pred HHHHHHHH
T ss_conf 99999998