HHsearch alignment for GI: 254780795 and conserved domain: cd05580

>cd05580 STKc_PKA STKc_PKA: Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It pl
Probab=97.44  E-value=0.0033  Score=40.40  Aligned_cols=136  Identities=16%  Similarity=0.230  Sum_probs=73.3

Q ss_pred             EECCCCCEEEEEEEEEC-CCC-EEEEEECCCC--CHH---HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             00466812001799943-995-8999821669--988---9999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KGT-FILTIYEKRM--NEK---DLPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~~-yiLri~e~~~--~~~---~l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
T Consensus         7 ~~lG~G~fg~V~~a~~~~t~~~vAiK~i~k~~~~~~~~~~~~~~E~~il~~l~h-----pnIv~l~~---~~~~~~~~yi   78 (290)
T cd05580           7 KTLGTGSFGRVMLVKHKGTGKYYAMKILSKAKIVKLKQVEHVLNEKRILQAVRH-----PFLVNLLG---SFKDNSNLYM   78 (290)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCC-----CCCCEEEE---EEEECCEEEE
T ss_conf             998327683999999989998999999856883377899999999999986799-----89990999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
T Consensus        79 vmEy~~gg~L~~-----------~l---~~-~~~l~--------e~~~~------------~~~~Qi~~aL~ylH~----  119 (290)
T cd05580          79 VMEFVPGGELFS-----------LL---RR-SGRFP--------EPVAR------------FYAAQVVLALEYLHS----  119 (290)
T ss_pred             EEECCCCCCHHH-----------HH---HH-CCCCC--------HHHHH------------HHHHHHHHHHHHHHH----
T ss_conf             995899989899-----------99---87-49999--------99999------------999999999999998----


Q ss_pred             CCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf             077744402234642256279604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYNNKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~~~i~giIDF~~~~  213 (316)
T Consensus       120 ---~~IiHRDiKpeNILl~~~g~iKL~DFG~a~  149 (290)
T cd05580         120 ---LDIVYRDLKPENLLLDSDGYIKITDFGFAK  149 (290)
T ss_pred             ---CCEEEEECCCCCCCCCCCCCEEEEECCCCE
T ss_conf             ---892420236433330689988980055336