HHsearch alignment for GI: 254780795 and conserved domain: cd05588

>cd05588 STKc_aPKC STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytos
Probab=97.44  E-value=0.0028  Score=40.79  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf             466812001799943-99-5899982166--99889---99999999998532677555100102677875224515578
Q gi|254780795|r   30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF  102 (316)
Q Consensus        30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~  102 (316)
T Consensus         3 LG~G~fG~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~H----p~Iv~l~~---~f~~~~~lylvm   75 (329)
T cd05588           3 IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNH----PFLVGLHS---CFQTESRLFFVI   75 (329)
T ss_pred             EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCCCEEEE---EEEECCEEEEEE
T ss_conf             30387939999998899989999998378877989999999999999971599----98795999---999899999999


Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r  103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL  182 (316)
Q Consensus       103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L  182 (316)
T Consensus        76 Ey~~GGdL~--------------~~l~~~-~~l~--------e~~a------------~~~~~qi~~aL~ylH~------  114 (329)
T cd05588          76 EFVSGGDLM--------------FHMQRQ-RKLP--------EEHA------------RFYSAEISLALNFLHE------  114 (329)
T ss_pred             ECCCCCCHH--------------HHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf             588988689--------------999874-9999--------9999------------9999999999999986------


Q ss_pred             CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf             774440223464225627-96048731621356
Q gi|254780795|r  183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN  214 (316)
Q Consensus       183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~  214 (316)
T Consensus       115 -~gIiHRDlKPeNILld~~g~iK-L~DFGlak~  145 (329)
T cd05588         115 -RGIIYRDLKLDNVLLDAEGHIK-LTDYGMCKE  145 (329)
T ss_pred             -CCCCCCCCCCCCEEECCCCCEE-ECCCCCCCC
T ss_conf             -5872363264210364789775-233220110