HHsearch alignment for GI: 254780795 and conserved domain: cd05588
>cd05588 STKc_aPKC STKc_aPKC: Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytos
Probab=97.44 E-value=0.0028 Score=40.79 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=70.1
Q ss_pred CCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEE
Q ss_conf 466812001799943-99-5899982166--99889---99999999998532677555100102677875224515578
Q gi|254780795|r 30 IIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPANIF 102 (316)
Q Consensus 30 i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~L~ 102 (316)
T Consensus 3 LG~G~fG~V~~~~~~~t~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~~H----p~Iv~l~~---~f~~~~~lylvm 75 (329)
T cd05588 3 IGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNH----PFLVGLHS---CFQTESRLFFVI 75 (329)
T ss_pred EEECCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCC----CCCCEEEE---EEEECCEEEEEE
T ss_conf 30387939999998899989999998378877989999999999999971599----98795999---999899999999
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 64788707689989999999986436753068754332311245645766752001552278899999998887652107
Q gi|254780795|r 103 SFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPKNL 182 (316)
Q Consensus 103 ~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~L 182 (316)
T Consensus 76 Ey~~GGdL~--------------~~l~~~-~~l~--------e~~a------------~~~~~qi~~aL~ylH~------ 114 (329)
T cd05588 76 EFVSGGDLM--------------FHMQRQ-RKLP--------EEHA------------RFYSAEISLALNFLHE------ 114 (329)
T ss_pred ECCCCCCHH--------------HHHHHC-CCCC--------HHHH------------HHHHHHHHHHHHHHHH------
T ss_conf 588988689--------------999874-9999--------9999------------9999999999999986------
Q ss_pred CCCEEECCCCCCCEEECC-CCCEEEECCCCCCC
Q ss_conf 774440223464225627-96048731621356
Q gi|254780795|r 183 PTGIIHADLFPDNVLFYN-NKIMGLIDFYFSCN 214 (316)
Q Consensus 183 p~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~~ 214 (316)
T Consensus 115 -~gIiHRDlKPeNILld~~g~iK-L~DFGlak~ 145 (329)
T cd05588 115 -RGIIYRDLKLDNVLLDAEGHIK-LTDYGMCKE 145 (329)
T ss_pred -CCCCCCCCCCCCEEECCCCCEE-ECCCCCCCC
T ss_conf -5872363264210364789775-233220110