HHsearch alignment for GI: 254780795 and conserved domain: cd05601

>cd05601 STKc_CRIK STKc_CRIK: Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome
Probab=97.50  E-value=0.0069  Score=38.32  Aligned_cols=136  Identities=15%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             EECCCCCEEEEEEEEEC-CC-CEEEEEECCC--CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE
Q ss_conf             00466812001799943-99-5899982166--99889---999999999985326775551001026778752245155
Q gi|254780795|r   28 QPIIHGVENSNFVIQTS-KG-TFILTIYEKR--MNEKD---LPVFIELLHYISRNKLPCPIPIPRNDGKLYGFLCKKPAN  100 (316)
Q Consensus        28 ~~i~~G~~Ntny~v~t~-~~-~yiLri~e~~--~~~~~---l~~~~~ll~~L~~~gipvP~pi~~~~G~~~~~~~~k~~~  100 (316)
T Consensus         7 ~~LG~G~fG~V~~a~~~~tg~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~~~-----hp~Iv~l~~---~f~~~~~~yi   78 (330)
T cd05601           7 SVIGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDIMAIAN-----SPWIPQLQY---AFQDKDNLYL   78 (330)
T ss_pred             EEEECCCCEEEEEEEECCCCCEEEEEEECHHHCCCHHHHHHHHHHHHHHHHCC-----CCCCCEEEE---EEEECCEEEE
T ss_conf             68421758299999988999899999982688679899999999999998679-----998894999---9998999999


Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78647887076899899999999864367530687543323112456457667520015522788999999988876521
Q gi|254780795|r  101 IFSFIKGSPLNHISDIHCEEIGSMLASMHQKTKNFHLYRKNTLSPLNLKFLWAKCFDKVDEDLKKEIDHEFCFLKESWPK  180 (316)
Q Consensus       101 L~~~i~G~~~~~~~~~~~~~lG~~La~lH~~~~~f~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  180 (316)
T Consensus        79 vmEy~~gGdL~--------------~~l~~~~~~l--------~e~~~~------------~~~~qi~~al~yLH-----  119 (330)
T cd05601          79 VMEYHPGGDLL--------------SLLNRYEDQF--------DESMAQ------------FYLAELVLAIHSLH-----  119 (330)
T ss_pred             EEECCCCCCHH--------------HHHHHCCCCC--------CHHHHH------------HHHHHHHHHHHHHH-----
T ss_conf             99837997489--------------9998618999--------999999------------99999999999997-----


Q ss_pred             CCCCCEEECCCCCCCEEECC-CCCEEEECCCCCC
Q ss_conf             07774440223464225627-9604873162135
Q gi|254780795|r  181 NLPTGIIHADLFPDNVLFYN-NKIMGLIDFYFSC  213 (316)
Q Consensus       181 ~Lp~g~IHgDl~~~NiL~~~-~~i~giIDF~~~~  213 (316)
T Consensus       120 --~~gIiHRDiKPeNILld~~g~iK-L~DFGla~  150 (330)
T cd05601         120 --QMGYVHRDIKPENILIDRTGHIK-LADFGSAA  150 (330)
T ss_pred             --HCCEEECCCCCCCEEECCCCCEE-EEECCCEE
T ss_conf             --48688454650003465899889-80265547